Citrus Sinensis ID: 018248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MNQPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEccccccccEEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEEcccEEEEEccEEEEEEccccEEEEEEEEEEcccccEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccEEcEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccccccccccccccEEEEcccccccccEEcccEEEEEEEEccccEEEEEEcccccEEEEEEEcccEEEEEEEcccccEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHHHHccccccccEEHHHHHHcccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccHHHEEEEccccccccEEEEccccccEEEEEccccccEEEEEEccccccEEEEccccHHHHEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccHcccccccEEEEEccccccEEEEEEccccEEEEEEcccEEEEEEEcccccccEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mnqpdpitihhlalnqdhgcfatgtetgfrvylsdpykpimrrdfdrnprggtQLVSMLFRSNIIClvnsgphqsnkvmiwddhenrylgelsfrsevknvrlrRDRIVVVLNQKVYVynftdlklvdqietvvnptglcdvsqnagpmvmacpgllkgqvrvedygtkksKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLaassdkgtvhvfglkvdsgspgtsklhsasepnlssknssaisSFRFIRGvlpkyfsskwsmaqfrlpeNVQYLVGFGRQNNTIVIVGLdgsyykcefdpmkggemhqlehykflkpeepf
Flexible Loop (DISEMBL)
MNQPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELsfrsevknvrlrrdrivvvlnqkvyvynftdlklvdQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVAtasskgtlirvFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLhsasepnlssknssaissFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLehykflkpeepf
Low Complexity Region (SEG)
MNQPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNvrlrrdrivvvlNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLssknssaissFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF
Disordered region (IsUnstruct)
******ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK***************************SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGG*****************
Disordered Region (DISOPRED)
****DPI**HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL**********************************RGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKP****
Disordered Region (DISEMBL)
MNQPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS*********************SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF
Disordered Region (DISPRO)
*****PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD*****************************FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.880	0.918	0.413	3e-68
Q640T2	344	WD repeat domain phosphoi	yes	no	0.885	0.924	0.411	5e-68
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.885	0.924	0.411	2e-67
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.885	0.924	0.411	6e-67
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.846	0.883	0.419	1e-66
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.885	0.924	0.408	8e-66
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.885	0.924	0.405	8e-66
Q7ZUX3	358	WD repeat domain phosphoi	no	no	0.860	0.863	0.346	2e-49
Q91VM3	360	WD repeat domain phosphoi	no	no	0.922	0.919	0.330	9e-49
Q9Y484	360	WD repeat domain phosphoi	no	no	0.863	0.861	0.344	1e-48

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  259 bits (661), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/348 (41%), Positives = 205/348 (58%), Gaps = 32/348 (9%)

Query: 13  ALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGP 72
             NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  G 
Sbjct: 17  GFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVSYVEMLFRCNYLALVGGGK 73

Query: 73  ---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKLVD 128
              +  NKVMIWDD + + + E+ F +EVK V+LRRDRIVVVL+  + V+ FT +   + 
Sbjct: 74  KPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLH 133

Query: 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAM 186
             ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ IA+
Sbjct: 134 VFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIAL 193

Query: 187 TLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGT 246
            L G  +ATAS KGTLIR+F+T  G L+QE+RRG++ A IY + F+ +A  +  SSD GT
Sbjct: 194 NLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHGT 253

Query: 247 VHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP 306
           VH+F               +A +P  + ++S A +SF      LPKYFSSKWS ++F++P
Sbjct: 254 VHIF---------------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQVP 292

Query: 307 ENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLK 354
                +  FG + N+++ +  DGSYYK +F+P   GE  +  + +FL+
Sbjct: 293 SGSPCICAFGTEPNSVIAICADGSYYKFQFNPK--GECTRDVYAQFLE 338

Xenopus laevis (taxid: 8355)

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  258 bits (659), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 144/350 (41%), Positives = 206/350 (58%), Gaps = 32/350 (9%)

Query: 11  HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
           +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  
Sbjct: 15  YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGYVEMLFRCNYLALVGG 71

Query: 71  GP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKL 126
           G    +  NKVMIWDD + + + E+ F +EVK V+LRRDRIVVVL+  + V+ FT +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI 184
           +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ I
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+ L G  +ATAS KGTLIR+F+T  G L+QE+RRG++ A IY + F+ +A  +  SSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDH 251

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVH+F               +A +P  + ++S A +SF      LPKYFSSKWS ++F+
Sbjct: 252 GTVHIF---------------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQ 290

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLK 354
           +P     +  FG + N+++ +  DGSYYK +F+P   GE  +  + +FL+
Sbjct: 291 VPSGSPCVCAFGTEPNSVIAICADGSYYKFQFNPK--GECTRDVYAQFLE 338

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/350 (41%), Positives = 204/350 (58%), Gaps = 32/350 (9%)

Query: 11  HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
           +   NQDHGCFA G E GFRVY +DP K   +++F   P GG   V MLFR N + LV  
Sbjct: 15  YAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEF---PEGGVGHVEMLFRCNYLALVGG 71

Query: 71  GP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKL 126
           G    +  NKVMIWDD + + + E+ F +EVK V+LRRDRIVVVL+  + V+ FT +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI 184
           +   ET  NP GLC +  N+   ++A PG   G V++ D     K    I AH   ++ I
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDIPAHEGILSCI 191

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+ L G  +ATAS KGTLIR+F+T  G L+QE+RRG++ A IY + F+ +A  +  SSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVH+F               +A +P  + ++S A +SF      LPKYFSSKWS ++F+
Sbjct: 252 GTVHIF---------------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQ 290

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLK 354
           +P     +  FG + N ++ +  DGSYYK  F+  + GE  +  + +FL+
Sbjct: 291 VPSGSPCICAFGTEPNAVLAICADGSYYKFLFN--QKGECSRDVYAQFLE 338

Gallus gallus (taxid: 9031)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 144/350 (41%), Positives = 204/350 (58%), Gaps = 32/350 (9%)

Query: 11  HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
           +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  
Sbjct: 15  YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGHVEMLFRCNYLALVGG 71

Query: 71  GP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKL 126
           G    +  NKVMIWDD + + + E+ F +EVK V+LRRDRIVVVL+  + V+ FT +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI 184
           +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ I
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+ L G  +ATAS KGTLIR+F+T  G L+QE+RRG++ A IY + F+ +A  +  SSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVH+F               +A +P  + ++S A +SF      LPKYFSSKWS ++F+
Sbjct: 252 GTVHIF---------------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQ 290

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLK 354
           +P     +  FG + N ++ +  DGSYYK  F+P   GE  +  + +FL+
Sbjct: 291 VPSGSPCICAFGTEPNAVIAICADGSYYKFLFNPK--GECIRDVYAQFLE 338

Homo sapiens (taxid: 9606)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/334 (41%), Positives = 195/334 (58%), Gaps = 30/334 (8%)

Query: 11  HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
           +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  
Sbjct: 15  YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGHVEMLFRCNYLALVGG 71

Query: 71  GP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKL 126
           G    +  NKVMIWDD + + + E+ F +EVK V+LRRDRIVVVL+  + V+ FT +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI 184
           +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ I
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+ L G  +ATAS KGTLIR+F+T  G L+QE+RRG++ A IY + F+ +A  +  SSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVH+F               +A +P  + ++S A +SF      LPKYFSSKWS ++F+
Sbjct: 252 GTVHIF---------------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQ 290

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338
           +P     +  FG + N ++ +  DGSYYK  F P
Sbjct: 291 VPSGSPCICAFGTEPNAVIAICADGSYYKFLFSP 324

Mus musculus (taxid: 10090)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  251 bits (640), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 143/350 (40%), Positives = 203/350 (58%), Gaps = 32/350 (9%)

Query: 11  HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
           +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  
Sbjct: 15  YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGHVEMLFRCNYLALVGG 71

Query: 71  GP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKL 126
           G    +  NKVMIWDD + + + E+ F +EVK V+LRRDRIVVVL+  + V+ FT +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI 184
           +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ I
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+ L G  +ATAS KGTLIR+F+T  G L+QE+RRG++ A IY +  + +A  +  SSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQDASLICVSSDH 251

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVH+F               +A +P  + ++S A +SF      LPKYFSSKWS ++F+
Sbjct: 252 GTVHIF---------------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQ 290

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLK 354
           +P     +  FG + N ++ +  DGSYYK  F+P   GE  +  + +FL+
Sbjct: 291 VPSGSPCICAFGTEPNAVIAICADGSYYKFLFNPK--GECIRDVYAQFLE 338

Pongo abelii (taxid: 9601)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  251 bits (640), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 142/350 (40%), Positives = 199/350 (56%), Gaps = 32/350 (9%)

Query: 11  HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
           +   NQDHGCFA G E GFRVY +DP K   + +F     GG   V MLFR N + LV  
Sbjct: 15  YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEF---LEGGVGHVEMLFRCNYLALVGG 71

Query: 71  GP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKL 126
           G    +  NKVMIWDD + + + E+ F +EVK V+LRRDRIVVVL+  + V+ FT +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI 184
           +   ET  NP GLC +  N+   ++A P    G V++ D     K    I AH   +  I
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVDIPAHEGVLCCI 191

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
            + L G  +ATAS KGTLIR+F+T  G L+QE+RRG++ A IY + F+ +A  +  SSD 
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQDASLICVSSDH 251

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVH+F               +A +P  + ++S A +SF      LPKYFSSKWS ++F+
Sbjct: 252 GTVHIF---------------AAEDPKRNKQSSLASASF------LPKYFSSKWSFSKFQ 290

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLK 354
           +P     +  FG + N ++ +  DGSYYK  F+P   GE  +  + +FL+
Sbjct: 291 VPSGSPCVCAFGTEPNAVIAICADGSYYKFLFNPK--GECSRDVYAQFLE 338

Danio rerio (taxid: 7955)

>sp|Q7ZUX3|WIPI4_DANRE WD repeat domain phosphoinositide-interacting protein 4 OS=Danio rerio GN=wdr45 PE=2 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 190/352 (53%), Gaps = 43/352 (12%)

Query: 9   IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR-DFDRNPRGGTQLVSMLFRSNIICL 67
           ++ L  NQD  CF    ETG R+Y     +P+M +   D    G   L SML RSN++ +
Sbjct: 7   VNSLQFNQDQSCFCCAMETGVRIY---NVEPLMEKGHLDHEQVGSIALCSMLHRSNLLAV 63

Query: 68  VNSG--PHQSN-KVMIWDDH------ENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYV 118
           V  G  P  S   V+IWDD       +++ + E +F   V  VR+R D+I+++L  ++YV
Sbjct: 64  VGGGVNPKFSEISVLIWDDAREVRDPKDKLVLEFTFTKPVLAVRMRHDKIIIILKNRIYV 123

Query: 119 YNFTD--LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-----GTKKS 171
           Y+F D  +KL  + +T  NP GLCD+  +    ++  PG   G +++ D      GT  +
Sbjct: 124 YSFPDNPVKLF-EFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLSNTKPGTSSA 182

Query: 172 KY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA 230
            + I AH S IA +A+   G  VA+AS KGTLIR+F+T     L E+RRG + A +Y + 
Sbjct: 183 PFTINAHQSEIACLALNQPGSVVASASRKGTLIRLFDTTTRDKLVELRRGTDPATLYCIN 242

Query: 231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL 290
           FS ++ +L ASSDKGTVH+F LK        +KL+            SA++    +  V+
Sbjct: 243 FSHDSSFLCASSDKGTVHIFALK-------DTKLN----------RRSALARVGKVGPVI 285

Query: 291 PKYFSSKWSMAQFRLPENVQYLVGFGRQN----NTIVIVGLDGSYYKCEFDP 338
            +Y  S+WS+A F +P     +  FG+      N+++ + +DG+++K  F P
Sbjct: 286 GQYVDSQWSLANFTVPAECACICAFGKNTSKNVNSVIAICVDGTFHKYVFTP 337

Danio rerio (taxid: 7955)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  194 bits (493), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 194/372 (52%), Gaps = 41/372 (11%)

Query: 9   IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR-DFDRNPRGGTQLVSMLFRSNIICL 67
           +  L  NQD  CF    ETG R+Y     +P+M +   D    G   LV ML RSN++ L
Sbjct: 9   VTSLHFNQDQSCFCCAMETGVRIY---NVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLAL 65

Query: 68  VNSG--PHQSN-KVMIWDD------HENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYV 118
           V  G  P  S   V+IWDD       +++ + E +F   V  VR+R D+IV+VL  ++YV
Sbjct: 66  VGGGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYV 125

Query: 119 YNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-----GTKKSK 172
           Y+F D  + + + +T  NP GLCD+  +    ++  PG   G +++ D      GT  + 
Sbjct: 126 YSFPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAP 185

Query: 173 Y-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
           + I AH S +A +++   G  VA+AS KGTLIR+F+T     L E+RRG + A +Y + F
Sbjct: 186 FTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINF 245

Query: 232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLP 291
           S ++ +L ASSDKGTVH+F LK               +  L+ +  SA++    +  ++ 
Sbjct: 246 SHDSSFLCASSDKGTVHIFALK---------------DTRLNRR--SALARVGKVGPMIG 288

Query: 292 KYFSSKWSMAQFRLPENVQYLVGFGRQN----NTIVIVGLDGSYYKCEFDPMKGGEMHQL 347
           +Y  S+WS+A F +P     +  FGR      N+++ + +DG+++K  F P         
Sbjct: 289 QYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAF 348

Query: 348 EHYKFLKPEEPF 359
           + Y  +  +E F
Sbjct: 349 DVYLDICDDEDF 360

Mus musculus (taxid: 10090)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 188/351 (53%), Gaps = 41/351 (11%)

Query: 9   IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR-DFDRNPRGGTQLVSMLFRSNIICL 67
           +  L  NQD  CF    ETG R+Y     +P+M +   D    G   LV ML RSN++ L
Sbjct: 9   VTSLRFNQDQSCFCCAMETGVRIY---NVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLAL 65

Query: 68  VNSG--PHQSN-KVMIWDD------HENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYV 118
           V  G  P  S   V+IWDD       + + + E +F   V +VR+R D+IV+VL  ++YV
Sbjct: 66  VGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYV 125

Query: 119 YNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-----GTKKSK 172
           Y+F D  + + + +T  NP GLCD+  +    ++  PG   G +++ D      GT  + 
Sbjct: 126 YSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAP 185

Query: 173 Y-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
           + I AH S IA +++   G  VA+AS KGTLIR+F+T     L E+RRG + A +Y + F
Sbjct: 186 FTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINF 245

Query: 232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLP 291
           S ++ +L ASSDKGTVH+F LK               +  L+ +  SA++    +  ++ 
Sbjct: 246 SHDSSFLCASSDKGTVHIFALK---------------DTRLNRR--SALARVGKVGPMIG 288

Query: 292 KYFSSKWSMAQFRLPENVQYLVGFGRQN----NTIVIVGLDGSYYKCEFDP 338
           +Y  S+WS+A F +P     +  FGR      N+++ + +DG+++K  F P
Sbjct: 289 QYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTP 339

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
225450815	425	PREDICTED: WD repeat domain phosphoinosi	0.983	0.830	0.651	1e-137
225436703	439	PREDICTED: WD repeat domain phosphoinosi	0.969	0.792	0.628	1e-133
356576795	377	PREDICTED: WD repeat domain phosphoinosi	0.969	0.923	0.644	1e-132
255582144	447	WD-repeat protein, putative [Ricinus com	0.977	0.785	0.634	1e-131
357441719	385	WD repeat domain phosphoinositide-intera	0.961	0.896	0.659	1e-130
225436701	424	PREDICTED: WD repeat domain phosphoinosi	0.961	0.813	0.630	1e-129
449436529	420	PREDICTED: WD repeat domain phosphoinosi	0.966	0.826	0.628	1e-129
356535069	376	PREDICTED: WD repeat domain phosphoinosi	0.972	0.928	0.625	1e-128
224123566	341	predicted protein [Populus trichocarpa]	0.933	0.982	0.643	1e-128
224131184	395	predicted protein [Populus trichocarpa]	0.980	0.891	0.619	1e-128

>gi|225450815|ref|XP_002283982.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Vitis vinifera]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/362 (65%), Positives = 291/362 (80%), Gaps = 9/362 (2%)

Query: 4   PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDF---DRNPRGGTQLVSMLF 60
           P P T+ HL+ NQDHGCF+ GT+ GFR+Y  DP++ I RRDF   D     G  +V MLF
Sbjct: 67  PAP-TLLHLSFNQDHGCFSAGTDHGFRIYNCDPFREIFRRDFCGDDGGSGTGIGVVEMLF 125

Query: 61  RSNIICLVNSGP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVY 117
           R NI+ LV  GP   +  NKVMIWDDH+ R +GELSFRSEVK+VRLRRDRIV +L QK++
Sbjct: 126 RCNILALVGGGPDPQYPPNKVMIWDDHQTRCIGELSFRSEVKSVRLRRDRIVAILLQKIF 185

Query: 118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH 177
           VYNF DLKL+ QIET+ NP GLC+VSQ +G MV+ CPGLLKGQVRVE Y +K++K+I AH
Sbjct: 186 VYNFADLKLLHQIETIANPKGLCEVSQLSGSMVLVCPGLLKGQVRVEHYNSKRTKFIMAH 245

Query: 178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237
            SRIA  A+T DGR +AT+SSKGTL+R+FNT+DG+LLQE+RRGA+RAEIYS+AFSS+AQW
Sbjct: 246 DSRIACFALTQDGRLLATSSSKGTLVRIFNTLDGTLLQEVRRGADRAEIYSVAFSSSAQW 305

Query: 238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK 297
           LA SSDKGTVHVF LKV+SGS G+ +  S+SEPNLS    SA+SS  F++GVLP+YFSS+
Sbjct: 306 LAVSSDKGTVHVFSLKVESGSLGSDRSRSSSEPNLSVP--SAVSSLSFMKGVLPRYFSSE 363

Query: 298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEE 357
           WS+AQFRL E  QY+V FG Q NT+VI+G+DGS+Y+C+FDP+ GGEM QLE+Y FLKPEE
Sbjct: 364 WSVAQFRLHEGSQYIVAFGHQKNTVVILGMDGSFYRCQFDPVAGGEMTQLEYYNFLKPEE 423

Query: 358 PF 359
            F
Sbjct: 424 TF 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436703|ref|XP_002263976.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/355 (62%), Positives = 280/355 (78%), Gaps = 7/355 (1%)

Query: 8   TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
           ++ H++ NQDHGCFA GT+ GFR+Y  DP++ I RRDFDR   GG  +V MLFR NI+ L
Sbjct: 89  SLLHISFNQDHGCFAAGTDNGFRIYNCDPFREIFRRDFDRG--GGIGVVEMLFRCNILAL 146

Query: 68  VNSGPHQS---NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDL 124
           V  GP      NKVMIWDDH++R +GELSFRSEV+ V+LRRDRI+VVL QK+++YNF DL
Sbjct: 147 VGGGPEPQYPLNKVMIWDDHQSRCIGELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADL 206

Query: 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASI 184
           KL+ QIET+ NP GLC VSQ    +V+ CPGL KGQVRVE Y ++++K+  AH SR+A  
Sbjct: 207 KLLHQIETIANPRGLCAVSQLTASLVLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACF 266

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+T DG+ +ATAS+KGTL+R+FNT DG+ LQE+RRGA+RAE+YS+AFSS AQWLA SSDK
Sbjct: 267 ALTTDGQLLATASTKGTLVRIFNTSDGTRLQEVRRGADRAEVYSMAFSSTAQWLAVSSDK 326

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVHVFGLKV+SGS G  K H AS+ NL+  +S    S  FI+GVLPKYFSS+WS+AQFR
Sbjct: 327 GTVHVFGLKVNSGSLGNDKSHGASDANLAVASSGL--SLSFIKGVLPKYFSSEWSVAQFR 384

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359
           L E  QY+V FG Q NT+VI+G+DGS+Y+C+FDP+ GGEM QLE++ FLKPEE F
Sbjct: 385 LHEGSQYIVAFGHQKNTVVILGMDGSFYRCQFDPVTGGEMTQLEYHNFLKPEEAF 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576795|ref|XP_003556515.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/357 (64%), Positives = 275/357 (77%), Gaps = 9/357 (2%)

Query: 8   TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
           ++ HL+ NQD GCFA  T+ GFR+Y  DP++ I RRDF   P GG  LV MLFR NI+  
Sbjct: 25  SLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDF--GPGGGVGLVHMLFRCNILAF 82

Query: 68  VNSGP-----HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT 122
           V  G      +  NKVMIWDDH +R +GELSFRSEVK VRLRRDRIVVVL  K++VYNF 
Sbjct: 83  VGGGSSPDPRYPPNKVMIWDDHLSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFA 142

Query: 123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA 182
           DLK++ QIET+ NP GLCD+S  +  MV+ CPGL KGQVRVE Y +K++K+I AH SRIA
Sbjct: 143 DLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA 202

Query: 183 SIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS 242
             A+T DGR +ATASSKGTLIR+FNT+DGSLLQE+RRGA+RAEIYSLAFS  AQWLA SS
Sbjct: 203 CFALTHDGRLLATASSKGTLIRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSS 262

Query: 243 DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ 302
           DKGTVHVF LKVDSG  G  + HS SE NL+S   +A+SS  F +GVLPKYFSS+WS+AQ
Sbjct: 263 DKGTVHVFNLKVDSGLLGHDRSHSTSEANLASP--TAMSSLSFFKGVLPKYFSSEWSVAQ 320

Query: 303 FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359
           FRL E +QY+V FG Q NT+VI+G+DGS+Y+C+FD   GGEM QLE+Y FLK EE F
Sbjct: 321 FRLQEGLQYVVAFGHQKNTVVILGMDGSFYRCQFDSAAGGEMTQLEYYNFLKAEETF 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582144|ref|XP_002531866.1| WD-repeat protein, putative [Ricinus communis] gi|223528474|gb|EEF30503.1| WD-repeat protein, putative [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/356 (63%), Positives = 277/356 (77%), Gaps = 5/356 (1%)

Query: 7   ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIIC 66
           I++ HL+ NQD GCFA GT+ GFR+Y  DP++ I RRDFDR   GG  +V MLFR NI+ 
Sbjct: 94  ISLLHLSFNQDFGCFAAGTDHGFRIYNCDPFREIFRRDFDRGGGGGIGVVEMLFRCNILA 153

Query: 67  LVNSGP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTD 123
           LV  G    +  NKVMIWDDH++R +GELSFRSEV++V+LRRDRI+VVL QK++VYNF D
Sbjct: 154 LVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 213

Query: 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIAS 183
           LKL+ QIET+ NP GLC VS  AG +V+ CPGL KGQVRVE Y +K++K+I AH SRIA 
Sbjct: 214 LKLLHQIETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC 273

Query: 184 IAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD 243
            A+T DG+ +ATAS+KGTL+RVFNT DGSLLQE+RRGA+RAEIYS+AFSS AQWLA SSD
Sbjct: 274 FALTQDGQLLATASTKGTLVRVFNTADGSLLQEVRRGADRAEIYSVAFSSTAQWLAVSSD 333

Query: 244 KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF 303
           KGTVHVF LK   GS GT +  + ++PN+    SS  SS  F +GVLPKYFSS+WS+AQF
Sbjct: 334 KGTVHVFSLKTTPGSLGTDRSRNTTDPNVGV--SSPTSSLSFFKGVLPKYFSSEWSVAQF 391

Query: 304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359
           RL E   Y+V FG Q NT+VI+GLDGS+Y+C+FDP+ GGEM QLE + FLKPE  F
Sbjct: 392 RLVEGSHYIVAFGHQKNTVVILGLDGSFYRCQFDPVNGGEMSQLEFHNFLKPEAAF 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441719|ref|XP_003591137.1| WD repeat domain phosphoinositide-interacting protein [Medicago truncatula] gi|355480185|gb|AES61388.1| WD repeat domain phosphoinositide-interacting protein [Medicago truncatula]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/352 (65%), Positives = 282/352 (80%), Gaps = 7/352 (1%)

Query: 11  HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
           HL+ NQD GCFA GT+ GFR+Y  DP++ I RRDF   P GG  LV MLFR NI+  V  
Sbjct: 38  HLSFNQDSGCFAAGTDHGFRIYNCDPFREIFRRDF--GPNGGIGLVHMLFRCNILAFVGG 95

Query: 71  GP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLV 127
           G    + +NKVMIWDDH++R +GELSFRSEVK VRLRRDRIVVVL  K++VYNF DLK++
Sbjct: 96  GSDPRYPANKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVL 155

Query: 128 DQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMT 187
            QIET+ NPTGLC+VS  +G MV+ACPGL KGQ+RVE Y +K++K+I AH SRIA  A+T
Sbjct: 156 HQIETIANPTGLCEVSHVSGTMVLACPGLQKGQIRVEHYASKRTKFIMAHDSRIACFAIT 215

Query: 188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV 247
            DGR +ATASSKGTL+RVFNT+DGSLLQE+RRGA+RAEIYSLAFSS+AQWLA SSDKGTV
Sbjct: 216 QDGRLLATASSKGTLVRVFNTLDGSLLQEVRRGADRAEIYSLAFSSSAQWLAVSSDKGTV 275

Query: 248 HVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE 307
           HVF LKVDSG  G  + H+ SE + +S ++++  S  FIRGVLP+YFSS+WS+AQFRL E
Sbjct: 276 HVFNLKVDSGLLGHDRSHTTSESSPTSPSAASSLS--FIRGVLPRYFSSEWSVAQFRLQE 333

Query: 308 NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359
            +QY V FG Q NTIVI+G+DGS+Y+C+FD + GGEM QLE+Y FLKPEE F
Sbjct: 334 GLQYHVAFGHQKNTIVILGMDGSFYRCQFDTVTGGEMTQLEYYNFLKPEETF 385

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436701|ref|XP_002263669.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/352 (63%), Positives = 278/352 (78%), Gaps = 7/352 (1%)

Query: 8   TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
           ++ H++ NQD+GCFATGT+ GFRVY  DP++ I RRD DR   GG  +V M   SN++ L
Sbjct: 74  SLLHISFNQDYGCFATGTDRGFRVYTCDPFREIFRRDLDRG--GGIGVVEMRLVSNLMAL 131

Query: 68  VNSGP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDL 124
           V  G    +  NKVMIWDD+E+R +GELSFRSEV+ VRL+ DRIVVVL QK++VYNF DL
Sbjct: 132 VGGGSDPQYPLNKVMIWDDYESRCIGELSFRSEVRAVRLQLDRIVVVLEQKIFVYNFADL 191

Query: 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASI 184
           KL+ Q+ET+ NP GLC VSQ AG +V+ CPGL KGQVRVE Y +K++K+I AH SRIAS 
Sbjct: 192 KLLHQMETIANPKGLCAVSQVAGSIVLVCPGLQKGQVRVEHYASKRTKFIAAHESRIASF 251

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+++DG+ +ATASSKGTL+R++NTMDG LLQE+RRGA+RAEIYS+AFSS AQWL  SSDK
Sbjct: 252 ALSMDGQLLATASSKGTLVRIYNTMDGVLLQELRRGADRAEIYSMAFSSTAQWLVVSSDK 311

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVHVF LKV+  SPG  K   AS  NL+   +S+ SS  FI+GVLPKYFSS+WS+AQFR
Sbjct: 312 GTVHVFSLKVNLASPGNDKSRGASNSNLAV--ASSTSSLSFIKGVLPKYFSSEWSVAQFR 369

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPE 356
           LPE  QY+V FG Q NT+VI+G+DGS+Y+C+FD + GGEM QLE++ FLKPE
Sbjct: 370 LPEGSQYIVAFGHQKNTVVILGMDGSFYRCQFDAVSGGEMIQLEYHNFLKPE 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436529|ref|XP_004136045.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus] gi|449533312|ref|XP_004173620.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/355 (62%), Positives = 278/355 (78%), Gaps = 8/355 (2%)

Query: 8   TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
           ++ HL+ NQDHGCFA GT+ GFR+Y  DP++ I RRDFDR   GG  +V MLFR NI+ L
Sbjct: 71  SLLHLSFNQDHGCFAAGTDRGFRIYNCDPFREIFRRDFDRG--GGVGVVEMLFRCNILAL 128

Query: 68  VNSGP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDL 124
           V  GP   +  NKVMIWDDH++R +GELSFRS V+ VRL+RDRI+V+L QKV+VYNF DL
Sbjct: 129 VGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSAVRGVRLQRDRIIVILEQKVFVYNFADL 188

Query: 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASI 184
           KL+ QIET+ NP GLC VSQ +  +V+ CPGL KGQVRVE Y ++++K+I AH SRIA  
Sbjct: 189 KLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQVRVEHYASRRTKFIMAHDSRIACF 248

Query: 185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
           A+T +G+ +ATAS+KGTL+R+FNT DG+LLQE+RRGA+RAEIYSLAFSS AQWLA SSDK
Sbjct: 249 ALTTNGQLLATASTKGTLVRIFNTFDGNLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDK 308

Query: 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304
           GTVHVF LKV+SGS G    H  ++ +LS   S   SSF FI+GVLPKYF S+WS+AQFR
Sbjct: 309 GTVHVFSLKVNSGSLGNDMSHQ-NDSSLSVAPSG--SSFSFIKGVLPKYFKSEWSVAQFR 365

Query: 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359
           L E  QY+V FG Q NT+VI+G+DGS+Y+C+FD + GGEM QLE++ FL PEE F
Sbjct: 366 LHEGSQYVVAFGHQKNTVVILGMDGSFYRCQFDSVNGGEMTQLEYHNFLMPEEAF 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535069|ref|XP_003536071.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/360 (62%), Positives = 273/360 (75%), Gaps = 11/360 (3%)

Query: 8   TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
           ++ HL+ NQD GCFA  T+ GFR+Y  DP++ I R DF     GG  LV MLFR NI+  
Sbjct: 20  SLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRHDFGSGG-GGVALVHMLFRCNILAF 78

Query: 68  VNSGP--------HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVY 119
           V +          +  NKVMIWDDH++R +GELSFRSEVK VRLRRDRIVVVL  K++VY
Sbjct: 79  VGASSSSSSSEPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVY 138

Query: 120 NFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHAS 179
           NF+DLK++ QIET+VNP GLCD+S  +  MV+ CPGL KGQVRVE Y +K++K+I AH S
Sbjct: 139 NFSDLKVLHQIETIVNPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDS 198

Query: 180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA 239
           RIA  A+T DGR +ATASSKGTL+R+FNT+DGSLLQE+RRGA+RAEIY LAFS  AQWLA
Sbjct: 199 RIACFALTHDGRLLATASSKGTLVRLFNTLDGSLLQEVRRGADRAEIYCLAFSPTAQWLA 258

Query: 240 ASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWS 299
            SSDKGTVHVF LKVDSG  G  + H  SE N SS   +A+SS  F +GVLPKYFSS+WS
Sbjct: 259 VSSDKGTVHVFNLKVDSGLLGHDRSHGTSEANPSSP--TAVSSLSFFKGVLPKYFSSEWS 316

Query: 300 MAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359
           +AQFRL E +QY+V FG Q NT+VI+G+DGS+Y+C+FD   GGEM QLE+Y FLK EE F
Sbjct: 317 VAQFRLQEGLQYVVAFGHQKNTVVILGMDGSFYRCQFDSAAGGEMTQLEYYNFLKAEETF 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123566|ref|XP_002330153.1| predicted protein [Populus trichocarpa] gi|222871609|gb|EEF08740.1| predicted protein [Populus trichocarpa]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/348 (64%), Positives = 280/348 (80%), Gaps = 13/348 (3%)

Query: 12  LALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG 71
           L+ NQ+H CF  G + GFR++ +DP+KP  RRD D +  GG  LV+ML+RSNI CLV  G
Sbjct: 1   LSFNQNHTCFLVGLQNGFRIFDTDPFKPSFRRDIDTH--GGIGLVAMLYRSNIFCLVCGG 58

Query: 72  P---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVD 128
           P   +  NKVMIWDDH++R +GELSFRSEVKNV+LRRD IVVVLNQK++VYNF DLKL++
Sbjct: 59  PDPMYPRNKVMIWDDHDSRCVGELSFRSEVKNVKLRRDMIVVVLNQKIFVYNFLDLKLLN 118

Query: 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL 188
           QIETV NPTGLC++S N+ PMV+ C GL KGQ+RVE++G+KKSK++ AH SR+  +++T 
Sbjct: 119 QIETVSNPTGLCEISHNSSPMVLVCLGLQKGQIRVENFGSKKSKFVMAHDSRVVCMSLTQ 178

Query: 189 DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH 248
           DGR +ATASSKGTLIRVFN++DG+LLQE+RRGA+RA+IYSLAFSSNAQ+LA SSDKGTVH
Sbjct: 179 DGRRLATASSKGTLIRVFNSLDGTLLQEVRRGADRADIYSLAFSSNAQFLAVSSDKGTVH 238

Query: 249 VFGLKVDSGSPGT---SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL 305
           +F LKVDSGS  +    + H ASEP       S +SS    +GVLPKYFSS+WS+A+FRL
Sbjct: 239 IFSLKVDSGSLPSLPNDRSHFASEP-----IHSRLSSLSIFKGVLPKYFSSEWSVARFRL 293

Query: 306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFL 353
           PE +QY VGFG Q NTIVI+G+DGS+Y+CEFDP+ GGEM QLE+  FL
Sbjct: 294 PEGLQYCVGFGHQKNTIVIIGMDGSFYRCEFDPVTGGEMIQLEYINFL 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131184|ref|XP_002321021.1| predicted protein [Populus trichocarpa] gi|222861794|gb|EEE99336.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/360 (61%), Positives = 278/360 (77%), Gaps = 8/360 (2%)

Query: 4   PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQ---LVSMLF 60
           P  I++ HL+ NQD GCFA GT+ GFR+Y  DP + I RRDFD +   G     +V MLF
Sbjct: 35  PPLISLLHLSFNQDFGCFAAGTDHGFRIYNCDPLREIFRRDFDGDGNSGGGGIGVVEMLF 94

Query: 61  RSNIICLVNSGP---HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVY 117
           R NI+ +V  GP   +  NKVMIWDDH++R +GELSFRSEV++V+LRRDRI+VVL QK++
Sbjct: 95  RCNILAIVGGGPDPQYSPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIF 154

Query: 118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH 177
           VYNF DLKL+ QIET+ NP GLC VS  AG +V+ CPGL KGQVRVE Y +K++K+I AH
Sbjct: 155 VYNFADLKLLHQIETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH 214

Query: 178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237
            SRIA  ++T DG+ + TAS+KGTL+RVFNT DG+LLQE+RRGA+RAEIYSLAFSS AQW
Sbjct: 215 DSRIACFSLTQDGQLLVTASTKGTLVRVFNTADGTLLQEVRRGADRAEIYSLAFSSTAQW 274

Query: 238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK 297
           LA SSDKGTVHVF LK++ GSPG  +  S  EPNL+   +S  SS  F +GVLPKYFSS+
Sbjct: 275 LAVSSDKGTVHVFSLKINPGSPGIDRSQSTDEPNLAV--TSPASSLSFFKGVLPKYFSSE 332

Query: 298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEE 357
           WS+AQF LPE  QY+V FG Q NT+VI+GLDGS+Y+C++DP+ GGEM QLE++ FL P E
Sbjct: 333 WSVAQFHLPEGSQYIVAFGHQKNTVVILGLDGSFYRCQYDPVNGGEMTQLEYHNFLNPPE 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.969	0.818	0.579	1.3e-109
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.949	0.746	0.552	6.9e-102
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.980	0.900	0.501	1.3e-93
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.963	0.829	0.478	7.5e-89
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.935	0.854	0.501	2.5e-88
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.966	0.908	0.423	1.5e-74
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.910	0.934	0.412	1.2e-63
UNIPROTKB|Q22UW9	351	TTHERM_00577340 "WD repeat dom	0.905	0.925	0.398	2.1e-61
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.690	0.663	0.468	3e-53
FB|FBgn0037648	340	CG11975 [Drosophila melanogast	0.693	0.732	0.369	1.4e-48

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 207/357 (57%), Positives = 258/357 (72%)

Query:     6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNII 65
             P ++ HL+ NQDH CFA GT+ GFR+   DP++ I RRDFDR   GG  +V MLFR NI+
Sbjct:    75 PPSVLHLSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRG--GGVAVVEMLFRCNIL 132

Query:    66 CLVNSGP---HQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT 122
              LV  GP   +  NKVMIWDDH+ R +GELSFRS+V++             QK++VYNF+
Sbjct:   133 ALVGGGPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFS 192

Query:   123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA 182
             DLKL+ QIET+ NP GLC VSQ  G MV+ CPGL KGQVR+E Y +K++K++ AH SRIA
Sbjct:   193 DLKLMHQIETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIA 252

Query:   183 SIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS 242
               A+T DG  +ATASSKGTL+R+FNT+DG+L QE+RRGA+RAEIYSLAFSSNAQWLA SS
Sbjct:   253 CFALTQDGHLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSS 312

Query:   243 DKGTVHVFGLKVDSGSPGTSKLHSASEPNLXXXXXXXXXXFRFIRGVLPKYFSSKWSMAQ 302
             DKGTVHVFGLKV+SGS    K  S   P+               +GVLP+YFSS+WS+AQ
Sbjct:   313 DKGTVHVFGLKVNSGSQ--VKDSSRIAPD--ATPSSPSSSLSLFKGVLPRYFSSEWSVAQ 368

Query:   303 FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359
             FRL E  QY+  FG Q NT+VI+G+DGS+Y+C+FDP+ GGEM QLE++  LKP   F
Sbjct:   369 FRLVEGTQYIAAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMSQLEYHNCLKPPSVF 425

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 196/355 (55%), Positives = 249/355 (70%)

Query:    11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDF----DRNPRGG---TQLVSMLFRSN 63
             H++ NQD+GCFA GT++GFR+Y  DP++ I RRD     D    GG     +V MLFR N
Sbjct:   101 HISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCN 160

Query:    64 IICLVNSG--PHQS-NKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYN 120
             I+ LV  G  PH   NKVMIWDDH++R +GELSFRS V+               K++VYN
Sbjct:   161 ILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYN 220

Query:   121 FTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASR 180
             F DLKLV QIET  NP GLC VSQ  G +V+ CPG  KGQVRVE YG +K+K+I AH SR
Sbjct:   221 FADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHTSR 280

Query:   181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA 240
             +A  A++ DGR +ATAS+KGTL+R++N  +G+LLQE+RRGA+RAEIYSLAFS+N Q+LA 
Sbjct:   281 VACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQYLAV 340

Query:   241 SSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLXXXXXXXXXXFRFIRGVLPKYFSSKWSM 300
             SSDKGT+HVF LK++ G     K   A +P++            FI+GVLPKYF S+WS+
Sbjct:   341 SSDKGTIHVFNLKINVGLTTNDKPLPAPDPDVPHISPSLS----FIKGVLPKYFHSEWSV 396

Query:   301 AQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKP 355
             AQFRL E  QY+V FG + NT+ +VG+DGS+Y+C+FDP+ GGEM QLE Y FLKP
Sbjct:   397 AQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGEMLQLECYNFLKP 451

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 183/365 (50%), Positives = 237/365 (64%)

Query:     3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS 62
             + D   +  ++ NQD+ CFA GT  GFR+Y  +P+K   RR+      GG ++V MLFRS
Sbjct:    30 ESDEAELVSVSWNQDYSCFAAGTSHGFRIYNCEPFKETFRRELKD---GGFKIVEMLFRS 86

Query:    63 NIICLVNSGPHQ---SNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVY 119
             NI+ LV  GP+    SNKV+IWDDH+ R + E +FRSE++               K+YVY
Sbjct:    87 NILALVGGGPNSQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVY 146

Query:   120 NFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHAS 179
             NF DL+L+ QIE + NP GLC +S +    V+ACPG+ +G+VRVE +G    + I AH S
Sbjct:   147 NFMDLRLLHQIENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDS 206

Query:   180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA 239
              IA + +TLDG  +ATAS+KGTLIR+FNTMDG+ LQE+RRG +RA+IYS+A S N QWLA
Sbjct:   207 NIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLA 266

Query:   240 ASSDKGTVHVFGLKVDS-GSPGTSKLHSASEPNLX-----XXXXXXXXXFRFIRGVLPKY 293
              SSDKGTVH+F L+V   G    S  H  S  +L                 F+RGVLPKY
Sbjct:   267 VSSDKGTVHIFSLRVRVIGEDAYSTEHETSSNSLQPLVSPASGANPGSSLSFLRGVLPKY 326

Query:   294 FSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFL 353
             FSS+WS +QF +PE  QY   FG QN TI I+GLDGS+Y+C FDP+ GGEM QLEH+ FL
Sbjct:   327 FSSEWSFSQFHVPEVTQYFAAFGAQN-TIAIIGLDGSFYRCNFDPVNGGEMTQLEHFHFL 385

Query:   354 KPEEP 358
             K + P
Sbjct:   386 KQDSP 390

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 176/368 (47%), Positives = 240/368 (65%)

Query:     7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIIC 66
             I +  ++ NQD GCFA GT  GFR++  DP+K   RRD      GG  +V MLFR NI+ 
Sbjct:    45 IRLLSVSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKS---GGFGIVEMLFRCNILA 101

Query:    67 LVNSGP---HQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTD 123
             LV  G    +  NKVMIWDDH +  +GE +FRS+V+              +K+YVYNFTD
Sbjct:   102 LVGGGSNAHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTD 161

Query:   124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIAS 183
             LKL+ QIET  NP GLC +S ++   V+ACPG+ +G VRVE +G K ++ I+AH S I+ 
Sbjct:   162 LKLLHQIETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISC 221

Query:   184 IAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD 243
             +A+T+DG  +ATAS KGTLIR+FNTMDG+ LQE+RRG ++A+IYS+A S N QWLA SSD
Sbjct:   222 MALTMDGLLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSD 281

Query:   244 KGTVHVFGLKVD-SGSPGTSKLHSASEPNL--------------XXXXXXXXXXFRFIRG 288
             KGTVH+F L+V  +G   +++  S   P +                          F++G
Sbjct:   282 KGTVHIFSLRVRVAGEDASNEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKG 341

Query:   289 VLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLE 348
             +LPKYFSS+WS AQF LPE  +Y+V FG QN T+++VGLDGS+Y+C FD + GG+M Q E
Sbjct:   342 ILPKYFSSEWSFAQFHLPEVTRYIVAFGAQN-TVMMVGLDGSFYRCSFDQVNGGQMLQKE 400

Query:   349 HYKFLKPE 356
             +++F+K +
Sbjct:   401 YFRFIKAD 408

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 178/355 (50%), Positives = 233/355 (65%)

Query:    15 NQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQ 74
             NQD  CFA GT  GFR+Y  +P+K   RR+      GG ++V MLFRSNI+ LV  GP+ 
Sbjct:    38 NQDSSCFAAGTSHGFRIYNCEPFKETFRRELKD---GGFKIVEMLFRSNILALVGGGPNS 94

Query:    75 ---SNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIE 131
                S+KV+IWDDH++R + E +FRSE++               K+YVYNF DL+L+ QIE
Sbjct:    95 QYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIE 154

Query:   132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGR 191
             T  NP GLC +S ++   V+ACPGL +G++RVE +G    + I AH S IA + +TLDG 
Sbjct:   155 TQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGL 214

Query:   192 FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG 251
              +ATAS+KGTLIR+FNTMDG+ LQE+RRG +RA+IYS+A S N QWLA SSDKGTVH+F 
Sbjct:   215 LLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFS 274

Query:   252 LKV-----DS-----GSPGTSKLHSASEPNLXXXXXXXX--XXFRFIRGVLPKYFSSKWS 299
             L+V     DS     G+  T + +S S   L              F+RGVLPKYFSS+WS
Sbjct:   275 LRVRVVGEDSYSTENGALLTQQNYSNSLQGLVSPTIGTNPGSSLSFMRGVLPKYFSSEWS 334

Query:   300 MAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLK 354
              AQF + E  Q+   FG  NNT+ I+G+DGS+Y+C FDP+ GGEM QLE+  F+K
Sbjct:   335 YAQFHVSEVTQFFAAFG-SNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYIHFMK 388

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 156/368 (42%), Positives = 217/368 (58%)

Query:     5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNI 64
             D + +  ++ NQD+ CF   T  GFRV+   P+   MRR F   P GG  +  MLFR++I
Sbjct:    13 DGVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMF--GPNGGIGIAEMLFRTSI 70

Query:    65 ICLVNSGPHQS---NKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNF 121
               L  +  +       + +WDD+  R + + +F SE++              + + VY F
Sbjct:    71 FGLAGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRF 130

Query:   122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI 181
              DL+L  Q  TV NP GLC +S +A   V ACPG  KGQV +E +G K++++I AH S +
Sbjct:   131 KDLRLFYQARTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSPL 190

Query:   182 ASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS 241
             + + M LDG  +ATAS +GTLIR+FNT DG+ +QE+RRG +RAEIYS+A S N QWLA S
Sbjct:   191 SCMTMALDGTLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQWLAVS 250

Query:   242 SDKGTVHVFGLKVDSGSPGTSKLHSASE--------------P-NLXXXXXXXXXXFRFI 286
             SDKGTVHVF L+V        K  SA+               P               F+
Sbjct:   251 SDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVPVTQTKIGSNTSSSLSFM 310

Query:   287 RGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQ 346
             +G+LPKYFSS+WS AQFRLPE  +Y++ FG Q+ T++++GLDGS+Y+  FDP+ GGEM  
Sbjct:   311 KGILPKYFSSEWSFAQFRLPEITRYIMAFGDQD-TVMMIGLDGSFYRYSFDPVNGGEMML 369

Query:   347 LEHYKFLK 354
              E++ FLK
Sbjct:   370 KEYHLFLK 377

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 143/347 (41%), Positives = 202/347 (58%)

Query:    15 NQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG--P 72
             NQD+ CFA GTE GF ++  DP+K    R FD    GG  +V MLFR NI+ +V  G  P
Sbjct:    19 NQDYSCFACGTEKGFLIFSCDPFKERFGRVFD----GGVGIVEMLFRCNILAIVGGGKKP 74

Query:    73 HQS-NKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIE 131
               + N+VMIWDD++N+ + +L F+SEVK               KVY+YNF+DL+LV Q+E
Sbjct:    75 RYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVHQLE 134

Query:   132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGR 191
             T  NP G+C +       V+ACPGL  G V VE Y  K+++ I AH   ++ IA+  DG 
Sbjct:   135 TTNNPKGICAICPGT-VNVLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNKDGT 193

Query:   192 FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG 251
              +ATAS KGTLIR+F+T  G  ++E+RRG  RAEIYS+AF++++  L  SSDK T H+F 
Sbjct:   194 LLATASEKGTLIRIFDTATGEKVKELRRGTNRAEIYSIAFNNDSTALCVSSDKNTGHIFD 253

Query:   252 LKVDSGSPGTSKLHSASEPNLXXXXXXXXXXFRFIRGVLP-KYFSSKWSMAQFRLPENVQ 310
             L +   SP   K     + N           F F+  +LP  YF S+WS  QF++PE+ +
Sbjct:   254 LSMAKPSP---KEEDTQQKN-------RQSTFSFMGDILPTNYFKSEWSAVQFQIPES-R 302

Query:   311 YLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEE 357
              +  FG   N+I ++   G  YK  +D  KG    +   ++F++ EE
Sbjct:   303 SICAFGSTPNSINVICASGICYKYTYDFSKGECKREENPHQFIENEE 349

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q22UW9 TTHERM_00577340 "WD repeat domain phosphoinositide-interacting protein 3" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 135/339 (39%), Positives = 196/339 (57%)

Query:     9 IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV 68
             I +L+ NQD+GCF+ GTE GF +Y ++P+K I    + R+  GG  +V ML+R NII LV
Sbjct:     7 ILYLSFNQDYGCFSCGTEDGFNIYNTEPFKQI----YSRSVGGGIGIVEMLYRCNIIALV 62

Query:    69 NSGPHQS---NKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTDLK 125
               G        KV +WDD + + + E++FRSEVK               ++YV+NF DLK
Sbjct:    63 GGGKSPKFPPTKVQLWDDSQLKRIAEMNFRSEVKAVKLKADRVIVVLETRIYVHNFADLK 122

Query:   126 LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIA 185
             L+D I+T  NP GLC V+     +++A P    G+V V  Y   K+  I AH S +  + 
Sbjct:   123 LIDTIDTCPNPLGLCSVNTEGDEIILATPHKEVGEVNVHLYSDNKTISIRAHQSALNCLQ 182

Query:   186 MTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG 245
                 G  +ATAS KGT+IR++NT  G LLQE+RRG+E A+IYS+AF     ++A SSD G
Sbjct:   183 TNPRGTKLATASQKGTIIRIYNTKKGELLQELRRGSEYAQIYSIAFHPKGTFVACSSDSG 242

Query:   246 TVHVFGLK-VDSGSPGTSKLHSASEPNLXXXXXXXXXXFRFIRGVLPKYFSSKWSMAQFR 304
             T+H+F LK  +   P  +  +S++               +F++ ++P YF S+WS AQ R
Sbjct:   243 TIHIFALKQTEDLEPQGNNGNSSN----GGTKSNPKSALKFLKFIVP-YFDSEWSFAQCR 297

Query:   305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGE 343
             +  + +  V FG  +NTIV V  +G+ YK  FD + GGE
Sbjct:   298 I-NDTKAKVAFGPDDNTIVAVTYEGTIYKATFDNINGGE 335

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 121/258 (46%), Positives = 159/258 (61%)

Query:    12 LALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPR-GGTQLVSMLFRSNIICLVNS 70
             +A NQ    F  GT  GF VY     KP++++   R P   G ++  MLF SN+   V +
Sbjct:    36 VAWNQVCSGFIVGTNHGFNVYSC---KPMIKKSISRAPHESGFKVAEMLFLSNLFAFVGN 92

Query:    71 GPHQS----NKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTDLKL 126
             G + S    NKV +WDD+ N  L EL+F+SEV               Q +YVY F +LK+
Sbjct:    93 GYNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNNLKV 152

Query:   127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAM 186
                IET++NP GLC V+      V+ACPG   GQV+V D      K+I AH S IA + +
Sbjct:   153 DRVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIACMTL 212

Query:   187 TLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGT 246
             TLDG  +ATAS+KGTLIR+FN +DG+LLQE RRG ERAEIY++A SSN +W+AASS+KGT
Sbjct:   213 TLDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIYNVAISSNLKWVAASSEKGT 272

Query:   247 VHVFGLKVD--SGSPGTS 262
             +HVF L+ D  S  P +S
Sbjct:   273 LHVFRLRPDILSFDPASS 290

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

FB|FBgn0037648 CG11975 [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 96/260 (36%), Positives = 137/260 (52%)

Query:    11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS 70
             + A NQD GCFA  T+TGFRVY  DP K   R+ F   P GG   V MLFR N + LV  
Sbjct:    15 YAAFNQDQGCFACATDTGFRVYNCDPLKEKERQYF---PEGGLSHVEMLFRCNYLALVGG 71

Query:    71 G--P-HQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTDL-KL 126
             G  P +  NKV++WDD +      L F   V+                + V+ FT   + 
Sbjct:    72 GIRPLYPPNKVIVWDDLKKSPAISLDFNQPVRAVRLRRDRIVVVLEGVIKVFTFTQQPQQ 131

Query:   127 VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKY-ITAHASRIASI 184
             +   ET  NP GLC +  ++   ++A PG   G V++ D   T+++   + AH + I+ I
Sbjct:   132 LHVFETSSNPNGLCVLCPHSNKSLLAFPGRRTGHVQIVDLANTERAPLEVIAHEAGISCI 191

Query:   185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244
             A+ L G  +ATA  KGTLIR+F+T  G  + E+RRG+  A I+ + F+  +  +  +SD 
Sbjct:   192 ALNLQGTRLATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNHQSTMVVVASDH 251

Query:   245 GTVHVFGLKVDSGSPGTSKL 264
             GT+HVF L  +   P  S L
Sbjct:   252 GTIHVFNL--EDNKPRESSL 269

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZUW6	WIPI3_DANRE	No assigned EC number	0.4057	0.8857	0.9244	yes	no
Q5MNZ6	WIPI3_HUMAN	No assigned EC number	0.4114	0.8857	0.9244	yes	no
Q640T2	WIPI3_XENTR	No assigned EC number	0.4114	0.8857	0.9244	yes	no
Q6CEI9	HSV2_YARLI	No assigned EC number	0.3201	0.8690	0.8690	yes	no
Q9CR39	WIPI3_MOUSE	No assigned EC number	0.4191	0.8467	0.8837	yes	no
Q5ZL16	WIPI3_CHICK	No assigned EC number	0.4114	0.8857	0.9244	yes	no
Q5R7W0	WIPI3_PONAB	No assigned EC number	0.4085	0.8857	0.9244	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 13/181 (7%)

Query: 76  NKVMIWDDHENRYLGELSFRSE-VKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE 131
             + +WD    + L  L   ++ V +V    D   V     +  + +++    K V  + 
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174

Query: 132 TVVNP-TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-ITAHASRIASIAMTLD 189
                   +   S +   ++ +      G +++ D  T K    +  H + + S+A + D
Sbjct: 175 GHTGEVNSVA-FSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230

Query: 190 GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV 249
           G  +A+ S  GT IRV++   G  +Q +        + SLA+S + + LA+ S  GT+ +
Sbjct: 231 GYLLASGSEDGT-IRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Query: 250 F 250
           +
Sbjct: 288 W 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 159 GQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEM 217
           G +++ D  T K    +T H   + S+A + DG  + ++SS GT I++++   G  L  +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTL 215

Query: 218 RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP 259
           R       + S+AFS +   LA+ S+ GT+ V+   + +G  
Sbjct: 216 R--GHENGVNSVAFSPDGYLLASGSEDGTIRVW--DLRTGEC 253

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 19/275 (6%)

Query: 9   IHHLALNQDHGCFATGTETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
           +  LA + D G       +   + L D     ++R     +       V   F  +   L
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS----VVSSFSPDGSLL 256

Query: 68  VNSGPHQSNKVMIWDDHENRYLGELSFR--SEVKNVRLRRDRIVVV---LNQKVYVYNFT 122
            +        + +WD   +  L        S V +V    D  ++     +  V +++  
Sbjct: 257 ASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA 182
             KL+  +    +   +  +S +    ++   G   G +R+ D  T K        S + 
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374

Query: 183 SIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS 242
           S++ + DGR V++ S+ GT +R+++   GSLL+ +     R  + SL FS + + LA+ S
Sbjct: 375 SVSFSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSR--VTSLDFSPDGKSLASGS 431

Query: 243 DKGTVHVFGLK----VDSGSPGTSKLHSASEPNLS 273
              T+ ++ LK      S SP    L S S     
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 140 CDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATAS 197
             +S   G  ++     L G V++ D  T  K  + +  H+  + S+A + DG+ +A+ S
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174

Query: 198 SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS-SDKGTVHVFGLKVDS 256
           S    I++++   G  L  +        + SLAFS +   L AS S  GT+ ++ L    
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK 232

Query: 257 GSPGTSKLHSASEPNLSSKNSSAISS 282
               T   HS S  +  S + S ++S
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGSLLAS 258

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 159 GQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEM 217
           G ++V D  T +    +  H   +  +A + DG ++A+ SS  T IR+++   G  ++ +
Sbjct: 31  GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT-IRLWDLETGECVRTL 89

Query: 218 RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
                 + + S+AFS + + L++SS   T+ V+
Sbjct: 90  T--GHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 171 SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA 230
            + +  H   +  +A + DG+ +AT S  GT I+V++   G LL+          +  +A
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLR--TLKGHTGPVRDVA 58

Query: 231 FSSNAQWLAASSDKGTVHVF 250
            S++  +LA+ S   T+ ++
Sbjct: 59  ASADGTYLASGSSDKTIRLW 78

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.81
KOG2321	703	consensus WD40 repeat protein [General function pr	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.76
KOG2315	566	consensus Predicted translation initiation factor	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
PRK04922	433	tolB translocation protein TolB; Provisional	99.73
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.62
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.59
KOG2315	566	consensus Predicted translation initiation factor	99.59
PRK04792	448	tolB translocation protein TolB; Provisional	99.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.58
PRK00178	430	tolB translocation protein TolB; Provisional	99.58
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.56
KOG4227	609	consensus WD40 repeat protein [General function pr	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.56
PRK01029	428	tolB translocation protein TolB; Provisional	99.56
KOG2139	445	consensus WD40 repeat protein [General function pr	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.55
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.54
KOG2314	698	consensus Translation initiation factor 3, subunit	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.46
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.45
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
PRK04043	419	tolB translocation protein TolB; Provisional	99.41
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.4
KOG2314	698	consensus Translation initiation factor 3, subunit	99.4
KOG1334	559	consensus WD40 repeat protein [General function pr	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.36
KOG4547	541	consensus WD40 repeat-containing protein [General	99.36
PRK04043	419	tolB translocation protein TolB; Provisional	99.35
COG4946	668	Uncharacterized protein related to the periplasmic	99.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.27
COG4946	668	Uncharacterized protein related to the periplasmic	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.24
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.23
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.15
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.1
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.09
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.08
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.01
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.01
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.99
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.97
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.96
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.93
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.92
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.9
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.9
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.9
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.89
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.84
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.83
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.79
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.79
KOG2695	425	consensus WD40 repeat protein [General function pr	98.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.78
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.76
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.72
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.72
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.64
PRK02888	635	nitrous-oxide reductase; Validated	98.6
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.59
KOG2695	425	consensus WD40 repeat protein [General function pr	98.59
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.57
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.55
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.51
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.5
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.48
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.45
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.44
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.43
PRK02888	635	nitrous-oxide reductase; Validated	98.43
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.37
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.34
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.3
COG3391	381	Uncharacterized conserved protein [Function unknow	98.29
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.22
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.21
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.2
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.2
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.2
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.16
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.09
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.05
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.96
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.86
PRK13616	591	lipoprotein LpqB; Provisional	97.85
COG3391	381	Uncharacterized conserved protein [Function unknow	97.84
KOG3621	726	consensus WD40 repeat-containing protein [General	97.83
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.8
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.79
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.78
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.78
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.76
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.76
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.75
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.65
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.57
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.53
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.48
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.41
KOG2395	644	consensus Protein involved in vacuole import and d	97.38
KOG2395	644	consensus Protein involved in vacuole import and d	97.38
PRK13616	591	lipoprotein LpqB; Provisional	97.33
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.18
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.13
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.1
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.91
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.9
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.85
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.77
PRK10115	686	protease 2; Provisional	96.76
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.73
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.58
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.55
KOG2444	238	consensus WD40 repeat protein [General function pr	96.5
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.34
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.33
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.22
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.06
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.04
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.79
COG5167	776	VID27 Protein involved in vacuole import and degra	95.72
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.6
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.56
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.52
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.38
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.19
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.15
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	95.01
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.97
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.84
PRK10115	686	protease 2; Provisional	94.83
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.76
KOG2444	238	consensus WD40 repeat protein [General function pr	94.64
PHA02713	557	hypothetical protein; Provisional	94.59
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.52
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.48
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.47
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.37
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.06
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.99
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.83
KOG2247	615	consensus WD40 repeat-containing protein [General	93.18
PHA02713	557	hypothetical protein; Provisional	93.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.08
COG4880	603	Secreted protein containing C-terminal beta-propel	93.02
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.75
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.74
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.47
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.46
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.4
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.27
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.2
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.16
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.0
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.88
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.74
COG1770	682	PtrB Protease II [Amino acid transport and metabol	91.58
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.57
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.54
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.51
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.86
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.67
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	90.54
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.42
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.77
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.46
COG4590	733	ABC-type uncharacterized transport system, permeas	89.29
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.25
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.21
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.16
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.11
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.85
COG5276	370	Uncharacterized conserved protein [Function unknow	88.53
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.47
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	88.21
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.12
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.85
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.75
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.34
COG3292	671	Predicted periplasmic ligand-binding sensor domain	87.27
COG5167	776	VID27 Protein involved in vacuole import and degra	87.25
COG4590	733	ABC-type uncharacterized transport system, permeas	86.96
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.92
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.7
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.45
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	85.85
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	84.87
PRK13684	334	Ycf48-like protein; Provisional	84.36
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.2
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.08
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.0
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	83.67
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	83.6
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	83.25
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	82.96
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	82.18
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.05
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	81.47
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	81.27
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	81.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	80.28

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-48  Score=302.75  Aligned_cols=276  Identities=14%  Similarity=0.223  Sum_probs=238.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.++|.|++|+|+|+.|++|+ |.++|+||+++....  .+.. +|..-|.+++|+|++..++..+    .||.|++||
T Consensus       113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~----~dg~I~lwd  185 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGS----KDGSIRLWD  185 (480)
T ss_pred             CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccc----cCCeEEEec
Confidence            5899999999999999999999 999999999986655  3444 8999999999999999988777    799999999


Q ss_pred             CCCccEEee-ec-cCcceeEEEEec-----ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           83 DHENRYLGE-LS-FRSEVKNVRLRR-----DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        83 ~~~~~~~~~-~~-~~~~v~~~~~~~-----~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      .++|+++.. +. |...|++++|.|     ....++   .||.|+|||+..++++..+.+|..+++++.|--  ++  ++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~g--li  261 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EG--LI  261 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--Cc--eE
Confidence            999877654 55 999999999976     455666   899999999999999999999999998887753  33  45


Q ss_pred             ecCCCCeeEEEEecCC----------------------------------------------------------------
Q 018248          153 CPGLLKGQVRVEDYGT----------------------------------------------------------------  168 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~----------------------------------------------------------------  168 (359)
                      ++|+.|++|++|....                                                                
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            5588899999986541                                                                


Q ss_pred             ----------------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          169 ----------------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       169 ----------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                                      +++..+.+|...|+.+.||||++++|+++.|.. |++||.++|+.+..|++  |-+.|+.++|+
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VYqvaws  418 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVYQVAWS  418 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeEEEEec
Confidence                            122345578889999999999999999999999 99999999999999998  77899999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL  312 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (359)
                      .|.++|++|+.|.++++|++++.+..                                     .+     +..|.+.|.+
T Consensus       419 aDsRLlVS~SkDsTLKvw~V~tkKl~-------------------------------------~D-----LpGh~DEVf~  456 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWDVRTKKLK-------------------------------------QD-----LPGHADEVFA  456 (480)
T ss_pred             cCccEEEEcCCCceEEEEEeeeeeec-------------------------------------cc-----CCCCCceEEE
Confidence            99999999999999999999997722                                     11     3345689999


Q ss_pred             eeecccCCEEEEEecCCeEEEEE
Q 018248          313 VGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       313 ~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      +.|+|||..+++|+.|..+++|.
T Consensus       457 vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  457 VDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-45  Score=291.10  Aligned_cols=278  Identities=15%  Similarity=0.171  Sum_probs=249.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ...+|..+.|++|++.|++|+ +|.+++|+.......  ..|. ||...+..+.|+|..+.+.+++++  .||++++|++
T Consensus       174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~-gH~~~v~~~~fhP~~~~~~lat~s--~Dgtvklw~~  248 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLR-GHTSRVGAAVFHPVDSDLNLATAS--ADGTVKLWKL  248 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEe-ccccceeeEEEccCCCccceeeec--cCCceeeecc
Confidence            468899999999999999999 999999999876444  6666 999999999999985333333333  7999999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      .+..++..+. |...|..++|+|+|++++   .|.+-++||+++++.+...++|...+..++|.++|.   |+++|+.|.
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~tGGlD~  325 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAATGGLDS  325 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eeeccCccc
Confidence            9999999998 999999999999999999   899999999999999999999999999999999987   555588999


Q ss_pred             eEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-CCCE
Q 018248          160 QVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQW  237 (359)
Q Consensus       160 ~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  237 (359)
                      .-+||+.+ +.++..+.+|..+|.+++|+|+|..||||+.|++ ++|||++..+.+.++..  |..-|+.+.|+| .|.+
T Consensus       326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~p~~g~f  402 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYSPQEGYF  402 (459)
T ss_pred             hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEecccCCeE
Confidence            99998765 5889999999999999999999999999999999 99999999999999987  788999999998 7889


Q ss_pred             EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248          238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR  317 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  317 (359)
                      |+|++.|++++||...+..+..                                          .+..|.+.|.++..++
T Consensus       403 L~TasyD~t~kiWs~~~~~~~k------------------------------------------sLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  403 LVTASYDNTVKIWSTRTWSPLK------------------------------------------SLAGHEGKVISLDISP  440 (459)
T ss_pred             EEEcccCcceeeecCCCcccch------------------------------------------hhcCCccceEEEEecc
Confidence            9999999999999998876431                                          2556788999999999


Q ss_pred             cCCEEEEEecCCeEEEEE
Q 018248          318 QNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       318 ~~~~l~~~~~dg~i~v~~  335 (359)
                      |++.|++++.|.++++|.
T Consensus       441 d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  441 DSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCceEEEeccCceeeecc
Confidence            999999999999999994

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=4.2e-43  Score=267.93  Aligned_cols=332  Identities=50%  Similarity=0.867  Sum_probs=295.0

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC---CCCeEEEEE
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH---QSNKVMIWD   82 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~---~d~~i~iwd   82 (359)
                      .....+++|+.|...+++|.|..++||++++.++...+.+.   .++...+.+.+..+++++++|+..   ..++|.|||
T Consensus         5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~---~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI---DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc---cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe
Confidence            34566799999999999999999999999998776666653   666888999999999999998864   678999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcc-cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      -...+++.++....+|.++.+.++...++..+.|++|... +.+.++.++...++-..++++|..+..+||+.|..-|.|
T Consensus        82 D~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   82 DLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            8888999999999999999999999888899999999996 778888888887788899999999999999999999999


Q ss_pred             EEEecCCe---eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248          162 RVEDYGTK---KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       162 ~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  238 (359)
                      +|-+....   ....+.+|...|.|++++.+|..+||+|..|++|||||..+|+++.+++.+...+.|.+++|||++.+|
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL  241 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence            99544433   247889999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             EEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeeccc
Q 018248          239 AASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQ  318 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  318 (359)
                      +++++.|+|+||.++......                  ...+++.+.+.++|+|+++.|+++.++++.+....++|..+
T Consensus       242 avsSdKgTlHiF~l~~~~~~~------------------~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~  303 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRDTENTE------------------DESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSE  303 (346)
T ss_pred             EEEcCCCeEEEEEeecCCCCc------------------cccccccccccccchhcccceeEEEEEccCCCcEEEEecCC
Confidence            999999999999998765331                  11255556667899999999999999999999999999998


Q ss_pred             CCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCCCCC
Q 018248          319 NNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEP  358 (359)
Q Consensus       319 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~~~~  358 (359)
                      .+.+++.+.||..+-+.++++++|++.+.++..|+..+++
T Consensus       304 ~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~~~~~~~~~~  343 (346)
T KOG2111|consen  304 TNTVIAICADGSYYKFKFDPKNGGESSRHEYSYFLSLQDD  343 (346)
T ss_pred             CCeEEEEEeCCcEEEEEeccccccchhhhhhhheeecccC
Confidence            8899999999999999999999999999999998887664

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.1e-41  Score=254.06  Aligned_cols=281  Identities=15%  Similarity=0.109  Sum_probs=246.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|.+.|+++.|++|.++|++++ ||.+.|||.-+..+....+++   ..-|-..+++|+++.++..+    -|+...||
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~---s~WVMtCA~sPSg~~VAcGG----LdN~Csiy  124 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP---SSWVMTCAYSPSGNFVACGG----LDNKCSIY  124 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC---ceeEEEEEECCCCCeEEecC----cCceeEEE
Confidence            35889999999999999999999 999999999887777667765   77788888888888887666    78999999


Q ss_pred             ECCCc------cEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           82 DDHEN------RYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        82 d~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      ++.+.      +..+++. |.+.+.+..|.+|+.++.  .|.+..+||+++++.+..+.+|.+.+..++++|... ..++
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~-ntFv  203 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG-NTFV  203 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC-CeEE
Confidence            98855      3344555 999999999999998888  899999999999999999999999999999999532 2355


Q ss_pred             ecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          153 CPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      + |+-|+..++|+.+ +...+.|.+|+..|++++|.|+|.-+++|++|++ .++||++..+.+..+.......+|++++|
T Consensus       204 S-g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  204 S-GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGITSVAF  281 (343)
T ss_pred             e-cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCceeEEE
Confidence            5 7779999998766 5788999999999999999999999999999999 99999999999998886556679999999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY  311 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (359)
                      |..|++|++|..|.++.+||.-.++..                                          ..+..|++.|.
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~e~v------------------------------------------g~L~GHeNRvS  319 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKGERV------------------------------------------GVLAGHENRVS  319 (343)
T ss_pred             cccccEEEeeecCCceeEeeccccceE------------------------------------------EEeeccCCeeE
Confidence            999999999999999999999887621                                          11446788999


Q ss_pred             EeeecccCCEEEEEecCCeEEEEE
Q 018248          312 LVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       312 ~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      ++..+|||..|++|+.|..++||.
T Consensus       320 cl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  320 CLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-41  Score=252.72  Aligned_cols=290  Identities=12%  Similarity=0.154  Sum_probs=237.7

Q ss_pred             CCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCccee---eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIM---RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .|++.|..++..+.+ ..+++++ |..+.+|++......+   .+.+. ||+..|..+.+++++++.+.++    .|+++
T Consensus        13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~s----wD~~l   87 (315)
T KOG0279|consen   13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSAS----WDGTL   87 (315)
T ss_pred             CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEecc----ccceE
Confidence            589999999999974 5667777 9999999997554333   45666 9999999999999999988887    89999


Q ss_pred             EEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEecc-CCCceeeeeecCCCccEEEe
Q 018248           79 MIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV-VNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  153 (359)
                      ++||+.+++..+.+. |...|.+++|++|...++   .|.+|++|++............ .+.|.++.|+|+....++++
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence            999999999999988 999999999999998888   9999999998655444444433 77899999999987777887


Q ss_pred             cCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          154 PGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                       ++.|++|++|+.++.. ...+.+|.+.++.+++||||.++++|+.||. +.+||++.++.+..+.   +...|.+++|+
T Consensus       168 -~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~v~sl~fs  242 (315)
T KOG0279|consen  168 -ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDIVNSLCFS  242 (315)
T ss_pred             -ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCeEeeEEec
Confidence             7789999999998744 4567899999999999999999999999999 9999999999998887   56799999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL  312 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (359)
                      |+.-.|+.+... .|+|||++++......                            .++...+     ..+.......+
T Consensus       243 pnrywL~~at~~-sIkIwdl~~~~~v~~l----------------------------~~d~~g~-----s~~~~~~~cls  288 (315)
T KOG0279|consen  243 PNRYWLCAATAT-SIKIWDLESKAVVEEL----------------------------KLDGIGP-----SSKAGDPICLS  288 (315)
T ss_pred             CCceeEeeccCC-ceEEEeccchhhhhhc----------------------------ccccccc-----ccccCCcEEEE
Confidence            998777776655 4999999998743210                            0000000     01111223467


Q ss_pred             eeecccCCEEEEEecCCeEEEEEeC
Q 018248          313 VGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       313 ~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ++|++||..|++|-.|+.|++|.+.
T Consensus       289 laws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  289 LAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEcCCCcEEEeeecCCcEEEEEee
Confidence            9999999999999999999999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=248.50  Aligned_cols=341  Identities=30%  Similarity=0.524  Sum_probs=282.3

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ..+..+..+.|+.|...|..|+....++|+.++.++.....     .+.+.++.+.++...+++++-..  .+.+++++.
T Consensus         3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~-----~~~~~IvEmLFSSSLvaiV~~~q--pr~Lkv~~~   75 (391)
T KOG2110|consen    3 GKKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD-----TEGVSIVEMLFSSSLVAIVSIKQ--PRKLKVVHF   75 (391)
T ss_pred             CCCcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc-----CCCeEEEEeecccceeEEEecCC--CceEEEEEc
Confidence            45677888999999999999996667999999876643222     67889999999999999999753  478999999


Q ss_pred             CCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEecc-CCCceeeeeecCCCccEEEecCCC-CeeE
Q 018248           84 HENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETV-VNPTGLCDVSQNAGPMVMACPGLL-KGQV  161 (359)
Q Consensus        84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~-d~~v  161 (359)
                      +.+..+..+..+.+|.++.++.+...++....|+|||+++.+.++++... .++...++++++..+.++|+.++. .|.|
T Consensus        76 Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   76 KKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             ccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            99999999999999999999998888887777999999999999999765 566678999999998889987654 5889


Q ss_pred             EEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEE
Q 018248          162 RVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       162 ~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  240 (359)
                      .+|+. +.+++..+..|++.+.+++|+++|.+|||+++.|+.||||.+.+|+.+.+|+.+.....|.+++|+|++++|++
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            99554 55888899999999999999999999999999999899999999999999999877788999999999999999


Q ss_pred             EcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE-EEeeecc--
Q 018248          241 SSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ-YLVGFGR--  317 (359)
Q Consensus       241 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~--  317 (359)
                      .++.++|+||.++.....+..     .+.....+.+........++...+.+++...|.|+..+++.+.. ..+++.+  
T Consensus       236 sS~TeTVHiFKL~~~~~~~~~-----~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~  310 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVSNNPPE-----SPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQ  310 (391)
T ss_pred             ecCCCeEEEEEecccccCCCC-----CCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccC
Confidence            999999999999987633211     11111111222222222255555667788899999999998554 6667764  


Q ss_pred             cCCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCCC
Q 018248          318 QNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPE  356 (359)
Q Consensus       318 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~~  356 (359)
                      ..+++.+++.||.++.|++++++||+|..++.+.+...-
T Consensus       311 ~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~  349 (391)
T KOG2110|consen  311 KIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSI  349 (391)
T ss_pred             CCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcc
Confidence            678999999999999999999999999999988876543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.9e-40  Score=259.88  Aligned_cols=235  Identities=16%  Similarity=0.200  Sum_probs=217.4

Q ss_pred             CCCCceEEEEEccC--CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQD--HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~--g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|...|.++.|+|.  +..||+|+ ||++++|++++...+  ..+. ||...|..++|.|++.++..++    .|.+-++
T Consensus       215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~Tas----fD~tWRl  287 (459)
T KOG0272|consen  215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTAS----FDSTWRL  287 (459)
T ss_pred             ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeecc----cccchhh
Confidence            58999999999997  67899999 999999999975555  5566 9999999999999999999988    8999999


Q ss_pred             EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      ||+.+++.+.... |...|.+++|++||.+++   .|..-+|||+++++++-.+.+|..+|..++|+|+|-.  +|+ |+
T Consensus       288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~--lAT-gs  364 (459)
T KOG0272|consen  288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH--LAT-GS  364 (459)
T ss_pred             cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE--Eee-cC
Confidence            9999998877777 999999999999999999   8889999999999999999999999999999999865  777 88


Q ss_pred             CCeeEEEEecCC-eeeEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      .|++++||+.+. ..+..+.+|.+-|+.++|+| .|.+|+|++.|++ ++||..+++++++.+.+  |.+.|.++.+++|
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~s~Dis~d  441 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVISLDISPD  441 (459)
T ss_pred             CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceEEEEeccC
Confidence            899999999887 56788899999999999999 7889999999999 99999999999999998  8899999999999


Q ss_pred             CCEEEEEcCCCcEEEEE
Q 018248          235 AQWLAASSDKGTVHVFG  251 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~  251 (359)
                      ++++++++.|.++++|.
T Consensus       442 ~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  442 SQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CceEEEeccCceeeecc
Confidence            99999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=229.62  Aligned_cols=264  Identities=15%  Similarity=0.213  Sum_probs=219.0

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-c
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-F   94 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~   94 (359)
                      -+|++++ |.+||+|...++...  ++++ .....|..+++.++...++.++     ...|++||+.+++  ++.++. |
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~--rTiq-h~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICS--RTIQ-HPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEE--EEEe-cCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEecc
Confidence            4778899 999999999987665  4443 2367799999999998888776     5899999998875  577887 8


Q ss_pred             CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-e
Q 018248           95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-K  170 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~  170 (359)
                      ...|..+.|..+|++++   .||+++|||++...+.+.++ +..+++.+.++|+...  |++ |..+|.|++|+.... .
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte--Lis-~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE--LIS-GDQSGNIRVWDLGENSC  158 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce--EEe-ecCCCcEEEEEccCCcc
Confidence            89999999999999999   99999999999877666665 4588999999998877  555 778999999998765 2


Q ss_pred             eE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc------EEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248          171 SK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS------LLQEMRRGAERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       171 ~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                      .. .+......|.++...|||.+|+.+...|. .++|++-+.+      ++..++.  |.+.+..+.+|||+++|++++.
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeecC
Confidence            22 33455678999999999999999999999 9999987643      4445555  8889999999999999999999


Q ss_pred             CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEE
Q 018248          244 KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIV  323 (359)
Q Consensus       244 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  323 (359)
                      |.+++||+.+.--                                      ..+   ..++.+..++..++||.||.+|+
T Consensus       236 dktv~iwn~~~~~--------------------------------------kle---~~l~gh~rWvWdc~FS~dg~Ylv  274 (311)
T KOG0315|consen  236 DKTVKIWNTDDFF--------------------------------------KLE---LVLTGHQRWVWDCAFSADGEYLV  274 (311)
T ss_pred             CceEEEEecCCce--------------------------------------eeE---EEeecCCceEEeeeeccCccEEE
Confidence            9999999998741                                      111   11444567999999999999999


Q ss_pred             EEecCCeEEEEEeCC
Q 018248          324 IVGLDGSYYKCEFDP  338 (359)
Q Consensus       324 ~~~~dg~i~v~~~~~  338 (359)
                      +|+.|+.+++|++..
T Consensus       275 Tassd~~~rlW~~~~  289 (311)
T KOG0315|consen  275 TASSDHTARLWDLSA  289 (311)
T ss_pred             ecCCCCceeeccccc
Confidence            999999999998876

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-37  Score=248.98  Aligned_cols=277  Identities=17%  Similarity=0.264  Sum_probs=241.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +....|++++|+.+|..||+|+ ||.++||+... ...  .++. .|.++|..+.|.-.+++++..+    .|+++.+||
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~--~tl~-~HkgPI~slKWnk~G~yilS~~----vD~ttilwd  304 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLI--STLG-QHKGPIFSLKWNKKGTYILSGG----VDGTTILWD  304 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhh--hhhh-ccCCceEEEEEcCCCCEEEecc----CCccEEEEe
Confidence            4467899999999999999999 99999999874 333  3443 6899999999998888888777    799999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      ..+++..+.+. |..+-.++.|-.+..+..  .|+.|+++.+....++.++.+|.++|..+.|.|.+.  +|++ ++.|+
T Consensus       305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS-~SdD~  381 (524)
T KOG0273|consen  305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLAS-CSDDG  381 (524)
T ss_pred             ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEE-ecCCC
Confidence            99999999999 666668899988888887  899999999988889999999999999999988875  3665 77899


Q ss_pred             eEEEEec-CCeeeEEeecccccccEEEEccCCc---------EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248          160 QVRVEDY-GTKKSKYITAHASRIASIAMTLDGR---------FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSL  229 (359)
Q Consensus       160 ~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  229 (359)
                      +++||.. +......+.+|...|..+.|+|+|.         .+++++.|++ |++||+..+.++..|..  |..+|+++
T Consensus       382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysv  458 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSV  458 (524)
T ss_pred             eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEE
Confidence            9999995 4577888999999999999999753         7899999999 99999999999999977  78899999


Q ss_pred             EecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc
Q 018248          230 AFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV  309 (359)
Q Consensus       230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (359)
                      +|||+|+++|+|+.||.|.||++++++-.                                 +..          ...+.
T Consensus       459 afS~~g~ylAsGs~dg~V~iws~~~~~l~---------------------------------~s~----------~~~~~  495 (524)
T KOG0273|consen  459 AFSPNGRYLASGSLDGCVHIWSTKTGKLV---------------------------------KSY----------QGTGG  495 (524)
T ss_pred             EecCCCcEEEecCCCCeeEeccccchhee---------------------------------Eee----------cCCCe
Confidence            99999999999999999999999998721                                 101          12356


Q ss_pred             EEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          310 QYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       310 v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      |..+.|+.+|+.|.++-.||.+.+.++.
T Consensus       496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  496 IFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            8899999999999999999999998774

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7e-38  Score=265.99  Aligned_cols=241  Identities=18%  Similarity=0.269  Sum_probs=218.4

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce-----------------------------eeeecccCCCCceeE
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI-----------------------------MRRDFDRNPRGGTQL   55 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~-----------------------------~~~~~~~~h~~~v~~   55 (359)
                      ...++|..|++|++.||.|. |..|++|.+.+.+.+                             ....+. ||.++|..
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVyg  456 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVYG  456 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCceee
Confidence            46789999999999999999 999999998852210                             011222 99999999


Q ss_pred             EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe
Q 018248           56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE  131 (359)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~  131 (359)
                      ..++|+.++++.++    +|+++++|.+.+..++..++ |..+|+++.|+|.|.+++   .|++-++|.....++++.+.
T Consensus       457 ~sFsPd~rfLlScS----ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa  532 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCS----EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA  532 (707)
T ss_pred             eeecccccceeecc----CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence            99999999998888    89999999999999999998 999999999999999999   89999999999999999999


Q ss_pred             ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248          132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~  210 (359)
                      +|...+.++.|+|+..+  +++ |+.|.+|++|+.. +..++.|.+|.++|.+++|||+|++|++|+.||. |.+||+.+
T Consensus       533 ghlsDV~cv~FHPNs~Y--~aT-GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~  608 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNY--VAT-GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN  608 (707)
T ss_pred             ccccccceEEECCcccc--ccc-CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC
Confidence            99999999999999875  776 8899999998765 5788999999999999999999999999999999 99999999


Q ss_pred             CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ++.+..+.+  |.+.|.++.||.||..||+|+.|.+|++||+.....
T Consensus       609 ~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  609 GSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             Ccchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            999999998  689999999999999999999999999999987653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.2e-37  Score=248.19  Aligned_cols=281  Identities=14%  Similarity=0.243  Sum_probs=234.6

Q ss_pred             CCCCceEEEEEccCCC-EEEEec-CCceEEEEcCC------Ccceeeeecc-c----CCCCceeEEEEeccCCEEEEEec
Q 018248            4 PDPITIHHLALNQDHG-CFATGT-ETGFRVYLSDP------YKPIMRRDFD-R----NPRGGTQLVSMLFRSNIICLVNS   70 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~------~~~~~~~~~~-~----~h~~~v~~~~~~~~~~~~~~~~~   70 (359)
                      +|+.+|.+.+|+|-.. .+++|+ |.+.++|++..      .+..++..+. .    .-...|++++|..+++.+++.+ 
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~-  254 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS-  254 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee-
Confidence            4899999999999776 889998 99999999863      1111111110 0    1246789999999999999888 


Q ss_pred             CCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           71 GPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        71 ~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                         .||.+++|+ ..|..+.++. |.++|.++.|+..|.+++   .|+++.+||..++...+.+..|..+.-.+.|--+.
T Consensus       255 ---~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~  330 (524)
T KOG0273|consen  255 ---EDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND  330 (524)
T ss_pred             ---cCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence               899999999 6778888887 999999999999999988   89999999999999999988887764445554443


Q ss_pred             CccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          147 GPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                      .   +++ .+.|+.|+|+... ..++.++.+|.++|.++.|+|.|.+|++++.|++ ++||.+........+..  |...
T Consensus       331 ~---F~t-s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hske  403 (524)
T KOG0273|consen  331 E---FAT-SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HSKE  403 (524)
T ss_pred             e---Eee-cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hccc
Confidence            3   555 5579999996555 4788899999999999999999999999999999 99999998888888887  7789


Q ss_pred             eEEEEecCCC---------CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEec
Q 018248          226 IYSLAFSSNA---------QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS  296 (359)
Q Consensus       226 i~~~~~s~~~---------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (359)
                      |..+.|+|+|         ..|++++.|++|++||+..+.+.                                      
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i--------------------------------------  445 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI--------------------------------------  445 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee--------------------------------------
Confidence            9999999975         37899999999999999998743                                      


Q ss_pred             ccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          297 KWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       297 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                          ..+..|..+|.+++|+|+|++|++|+-||.|++|+...
T Consensus       446 ----~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  446 ----HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             ----EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence                12444668999999999999999999999999998876

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.7e-37  Score=228.38  Aligned_cols=244  Identities=17%  Similarity=0.231  Sum_probs=209.3

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      -..+.|+.+...||++.||+++...||+||+++.......++. +|...|..+.|..++..+...+    +||+++|||+
T Consensus        38 h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgs----eDgt~kIWdl  112 (311)
T KOG0315|consen   38 HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGS----EDGTVKIWDL  112 (311)
T ss_pred             cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecC----CCceEEEEec
Confidence            3467899999999999999999999999999988776667787 9999999999999988888777    8999999999


Q ss_pred             CCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           84 HENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      +...+.+.+++..+|+++..+|+..-++   .+|.|++||+........+ ......+..+.+.|++..  ++. +...|
T Consensus       113 R~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm--l~a-~nnkG  189 (311)
T KOG0315|consen  113 RSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM--LAA-ANNKG  189 (311)
T ss_pred             cCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE--EEE-ecCCc
Confidence            9988888899999999999999865544   8899999999777555554 334456778888998876  554 55789


Q ss_pred             eEEEEecCC-------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEe
Q 018248          160 QVRVEDYGT-------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       160 ~v~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~  231 (359)
                      .+++|+...       .++..++.|.+.+..+.+|||+++||+++.|.+ ++||++.+. +....+.+  |...++..+|
T Consensus       190 ~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvWdc~F  266 (311)
T KOG0315|consen  190 NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVWDCAF  266 (311)
T ss_pred             cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEEeeee
Confidence            999998754       456678899999999999999999999999999 999999887 44445554  7789999999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      |.||+||++|+.|+.+++|++..++..
T Consensus       267 S~dg~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  267 SADGEYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             ccCccEEEecCCCCceeecccccCcee
Confidence            999999999999999999999998743

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-37  Score=240.95  Aligned_cols=277  Identities=14%  Similarity=0.180  Sum_probs=240.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      |..+|+.+-|+|+-..+++++ |.+|++||..+++.  ...++ ||...+..+++...+.+++.++    .|-.+++||.
T Consensus       107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~Lr-GHt~sv~di~~~a~Gk~l~tcS----sDl~~~LWd~  179 (406)
T KOG0295|consen  107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLR-GHTDSVFDISFDASGKYLATCS----SDLSAKLWDF  179 (406)
T ss_pred             cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhh-ccccceeEEEEecCccEEEecC----CccchhheeH
Confidence            778999999999999999998 99999999999877  46776 9999998888888887777777    6777999998


Q ss_pred             CC-ccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           84 HE-NRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        84 ~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      .+ .++++.+. |+..|.++.|-|.|.+++   .|.+|+.|++.++-++.++.+|...+..+..+.|+  .++|+ ++.|
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG--ti~As-~s~d  256 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG--TIIAS-CSND  256 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe--eEEEe-cCCC
Confidence            77 45555554 889999999999998888   89999999999999999999999977777665555  55776 8889


Q ss_pred             eeEEEEecCCe-eeEEeecccccccEEEEccC---------------CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCC
Q 018248          159 GQVRVEDYGTK-KSKYITAHASRIASIAMTLD---------------GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAE  222 (359)
Q Consensus       159 ~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~  222 (359)
                      .++++|....+ +...++.|+.+|.+++|.|.               ++++.+++.|++ |++||+.++.++.++.+  |
T Consensus       257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~g--h  333 (406)
T KOG0295|consen  257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLVG--H  333 (406)
T ss_pred             ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEEec--c
Confidence            99999988764 56678899999999999773               358999999999 99999999999999998  7


Q ss_pred             CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248          223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ  302 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (359)
                      ...|..++|+|.|+||+++.+|+++++||++++++..                                          .
T Consensus       334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk------------------------------------------~  371 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK------------------------------------------T  371 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee------------------------------------------c
Confidence            8899999999999999999999999999999987431                                          1


Q ss_pred             EeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          303 FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       303 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      +..|...++++.|..+..++++|+-|-++.+|..
T Consensus       372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            3345678899999999999999999999999963

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.7e-36  Score=223.61  Aligned_cols=284  Identities=12%  Similarity=0.200  Sum_probs=232.9

Q ss_pred             CCCCCceEEEEEccC-CCEEEEec-CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      +.|++.|..++|+|- |..||+|+ |+.|++|+... ....++..+..+|...|+.++|+|.+++++.++    .|.++.
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS----FD~t~~   86 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS----FDATVV   86 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee----ccceEE
Confidence            568899999999998 99999999 99999999984 334555566668999999999999999998888    899999


Q ss_pred             EEECCCc--cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc---ceeeeeEeccCCCceeeeeecCCCccE
Q 018248           80 IWDDHEN--RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD---LKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        80 iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      ||.-..+  +++..+. |+.+|.+++|+++|.+|+   .|+.|-||.+..   -++...++.|...+..+.|+|..+-  
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl--  164 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL--  164 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce--
Confidence            9985544  6777887 999999999999999999   999999999853   3577888999999999999998764  


Q ss_pred             EEecCCCCeeEEEEecC-C---eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248          151 MACPGLLKGQVRVEDYG-T---KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI  226 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~-~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i  226 (359)
                      |++ ++.|++|++|... .   .+.+++.+|...|.+++|+|.|..|++++.|++ ++||...+     .+. +.|...+
T Consensus       165 L~S-~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~-~~~sr~~  236 (312)
T KOG0645|consen  165 LFS-CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLS-GMHSRAL  236 (312)
T ss_pred             eEE-eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccc-hhcccce
Confidence            555 7799999996554 2   678999999999999999999999999999999 99998652     222 3366789


Q ss_pred             EEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248          227 YSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP  306 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (359)
                      +.+.|.  ...|++++.|+.|++|.-......+.                      +..+             ...-..|
T Consensus       237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~----------------------~~l~-------------~~~~~aH  279 (312)
T KOG0645|consen  237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPS----------------------WNLL-------------AKKEGAH  279 (312)
T ss_pred             Eeeeec--ccceEeccCCCEEEEEEecCCCCCch----------------------HHHH-------------Hhhhccc
Confidence            999997  45899999999999998875422110                      0000             0012234


Q ss_pred             CCcEEEeeeccc-CCEEEEEecCCeEEEEEeC
Q 018248          307 ENVQYLVGFGRQ-NNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       307 ~~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~  337 (359)
                      ...|++++|.|. .++|++++.||.+++|.+.
T Consensus       280 e~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  280 EVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            567899999994 6899999999999999874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-37  Score=243.74  Aligned_cols=238  Identities=17%  Similarity=0.233  Sum_probs=200.2

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc---CCEEEEEecCCCCCCeEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR---SNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~~d~~i~   79 (359)
                      .|.+.|.|++|+|||+.||+|+ ||+|++||..++++.- ..+. ||...|..++|.|-   +....+++++  .||.++
T Consensus       155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~-gH~K~It~Lawep~hl~p~~r~las~s--kDg~vr  230 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALR-GHKKWITALAWEPLHLVPPCRRLASSS--KDGSVR  230 (480)
T ss_pred             CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-cccc-CcccceeEEeecccccCCCccceeccc--CCCCEE
Confidence            5899999999999999999999 9999999999876654 4565 99999999998752   2222344444  689999


Q ss_pred             EEECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEec------------------------
Q 018248           80 IWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIET------------------------  132 (359)
Q Consensus        80 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~------------------------  132 (359)
                      |||+..++++..+. |..+|+|++|--+|.+..  .|++|++|+..+|++...+++                        
T Consensus       231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t  310 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT  310 (480)
T ss_pred             EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence            99999999999988 999999999988877666  899999999876654333333                        


Q ss_pred             -------------------------------------------------------cCCCceeeeeecCCCccEEEecCCC
Q 018248          133 -------------------------------------------------------VVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus       133 -------------------------------------------------------~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                                                                             |...++.+.|+|++..  +|+ ++-
T Consensus       311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~--IAS-aSF  387 (480)
T KOG0271|consen  311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY--IAS-ASF  387 (480)
T ss_pred             cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE--EEE-eec
Confidence                                                                   3334455667777654  666 678


Q ss_pred             CeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      |..|++|+-+ ++.+..+++|-..|..++|+.|.++|++|+.|.+ +++||+++.+....+.+  |...|.++.|+|||+
T Consensus       388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADEVFAVDWSPDGQ  464 (480)
T ss_pred             ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCceEEEEEecCCCc
Confidence            9999997754 5778899999999999999999999999999999 99999999999999987  778999999999999


Q ss_pred             EEEEEcCCCcEEEEE
Q 018248          237 WLAASSDKGTVHVFG  251 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~  251 (359)
                      .+++|+.|..+++|.
T Consensus       465 rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  465 RVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecCCCceEEEeec
Confidence            999999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.5e-36  Score=235.68  Aligned_cols=298  Identities=17%  Similarity=0.223  Sum_probs=252.2

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|.+.|.|+++.|-.++|++|+ |++|+|||+.+++.+  .++. ||-..+..++++....+++.++    .|+.|+-|
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~g----edk~VKCw  220 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAG----EDKQVKCW  220 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEec----CCCeeEEE
Confidence            46899999999999999999999 999999999998776  4454 8999999999998888888887    79999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      |++.++.++.+. |-..|.+++.+|.-..++   .|.++++||+++...+..+.+|..++..+.+.|-...  +++ |+.
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq--vit-~S~  297 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ--VIT-GSH  297 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc--eEE-ecC
Confidence            999999999987 999999999999888777   8999999999999999999999999999988887666  554 789


Q ss_pred             CeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      |++|++|+.. ++....+..|+..+.+++.+|....+|+++.|.  |+-|++..|..+..+.+  |.+-|++++...|+ 
T Consensus       298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~nsD~-  372 (460)
T KOG0285|consen  298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVNSDG-  372 (460)
T ss_pred             CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeeccCc-
Confidence            9999998765 577888899999999999999999999999986  89999999999998876  78899999998776 


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                      ++++|+++|.+.+||.+++...+..+..                        ..|...+.          +..|.+.+|.
T Consensus       373 v~~~G~dng~~~fwdwksg~nyQ~~~t~------------------------vqpGSl~s----------EagI~as~fD  418 (460)
T KOG0285|consen  373 VLVSGGDNGSIMFWDWKSGHNYQRGQTI------------------------VQPGSLES----------EAGIFASCFD  418 (460)
T ss_pred             eEEEcCCceEEEEEecCcCccccccccc------------------------ccCCcccc----------ccceeEEeec
Confidence            7788999999999999998743210000                        00111111          2457888999


Q ss_pred             ccCCEEEEEecCCeEEEEEeCCCCCCceEEeee
Q 018248          317 RQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEH  349 (359)
Q Consensus       317 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~  349 (359)
                      ..|..|++|..|.+|.+|+=+.....|...+.|
T Consensus       419 ktg~rlit~eadKtIk~~keDe~aT~EthPl~w  451 (460)
T KOG0285|consen  419 KTGSRLITGEADKTIKMYKEDEHATEETHPLNW  451 (460)
T ss_pred             ccCceEEeccCCcceEEEecccccCcccCCcCC
Confidence            999999999999999999887655555555444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.2e-38  Score=246.65  Aligned_cols=279  Identities=10%  Similarity=0.127  Sum_probs=233.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      -+-+|..+.|.|+|+.|++|+ .|.+.+|+.......  ..+ .+|...|..+.|+.++..++...    .+|.|++|+.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--til-QaHDs~Vr~m~ws~~g~wmiSgD----~gG~iKyWqp  167 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TIL-QAHDSPVRTMKWSHNGTWMISGD----KGGMIKYWQP  167 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHh-hhhcccceeEEEccCCCEEEEcC----CCceEEeccc
Confidence            356899999999999999999 999999998643322  222 28999999999999888877665    6799999996


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      .......... |...|++++|+|+...++   .||+|+|||....+....+.+|.-.+.+++|+|....  +++ |+.|.
T Consensus       168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL--ias-gskDn  244 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL--IAS-GSKDN  244 (464)
T ss_pred             chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce--eEE-ccCCc
Confidence            5544333333 559999999999765555   8999999999988888889999999999999997653  555 77899


Q ss_pred             eEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-CCCE
Q 018248          160 QVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQW  237 (359)
Q Consensus       160 ~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  237 (359)
                      .|++|+.+ +.++.++..|+..|..+.|+|++++|+++|.|.. ++++|+++.+.+..+++  |...++++.|+| ...+
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~l  321 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNESL  321 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeeccccccccc
Confidence            99997765 5888999999999999999999999999999999 99999999999999987  888999999999 5568


Q ss_pred             EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248          238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR  317 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  317 (359)
                      |.+|+.||.|..|.+...++...                             +            -..|.+.|++++|+|
T Consensus       322 ftsgg~Dgsvvh~~v~~~~p~~~-----------------------------i------------~~AHd~~iwsl~~hP  360 (464)
T KOG0284|consen  322 FTSGGSDGSVVHWVVGLEEPLGE-----------------------------I------------PPAHDGEIWSLAYHP  360 (464)
T ss_pred             eeeccCCCceEEEeccccccccC-----------------------------C------------Ccccccceeeeeccc
Confidence            89999999999999985543310                             0            112457899999999


Q ss_pred             cCCEEEEEecCCeEEEEEeC
Q 018248          318 QNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       318 ~~~~l~~~~~dg~i~v~~~~  337 (359)
                      =|..|++|+.|.+++.|.-.
T Consensus       361 lGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  361 LGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cceeEeecCCCcceeeeccC
Confidence            99999999999999999643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.9e-35  Score=239.10  Aligned_cols=287  Identities=16%  Similarity=0.238  Sum_probs=234.4

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|..-|.|+.|+|||+++|+++ |+++.+||-.+++......-..+|.+.|..++|+|+...++.++    .|.+++||
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S----aDkt~KIW  262 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS----ADKTIKIW  262 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec----CCceEEEE
Confidence            46888999999999999999999 99999999999888766554458999999999999999999999    78999999


Q ss_pred             ECCCccEEeeeccC----cceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELSFR----SEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      |+.++++++++...    .+...+-|..+..+.+ .+|.|..++...+..+..+.+|...++++..+++++.  +.+ |+
T Consensus       263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~--i~S-gs  339 (603)
T KOG0318|consen  263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT--IYS-GS  339 (603)
T ss_pred             EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE--EEe-ec
Confidence            99999999998733    3344556665544444 9999999999999999999999999999999999964  554 77


Q ss_pred             CCeeEEEEecCCee--------------------------------eE--------------------------------
Q 018248          157 LKGQVRVEDYGTKK--------------------------------SK--------------------------------  172 (359)
Q Consensus       157 ~d~~v~~~~~~~~~--------------------------------~~--------------------------------  172 (359)
                      .||.|.-|+.....                                ++                                
T Consensus       340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~  419 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT  419 (603)
T ss_pred             cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence            89988888754100                                00                                


Q ss_pred             ----------Eeecc--------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          173 ----------YITAH--------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       173 ----------~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                                .++.+        .-...+++++|++..+++|+.|+. |+||.+..++...+.....|.++|++++||||
T Consensus       420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd  498 (603)
T KOG0318|consen  420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVAYSPD  498 (603)
T ss_pred             EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEEECCC
Confidence                      00001        113467899999999999999999 99999987665444333348899999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      +.+||++...+.+.+||+.+.+..                                    ...     ...|...|.+++
T Consensus       499 ~~yla~~Da~rkvv~yd~~s~~~~------------------------------------~~~-----w~FHtakI~~~a  537 (603)
T KOG0318|consen  499 GAYLAAGDASRKVVLYDVASREVK------------------------------------TNR-----WAFHTAKINCVA  537 (603)
T ss_pred             CcEEEEeccCCcEEEEEcccCcee------------------------------------cce-----eeeeeeeEEEEE
Confidence            999999999999999999998721                                    011     334556789999


Q ss_pred             ecccCCEEEEEecCCeEEEEEeCC
Q 018248          315 FGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      |+|+...+|+|+-|-.|.||+++.
T Consensus       538 WsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  538 WSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             eCCCceEEEeccccceEEEEEccC
Confidence            999999999999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.8e-35  Score=241.09  Aligned_cols=277  Identities=18%  Similarity=0.271  Sum_probs=234.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|+.+|.+++|+|++++|++++ ++.+++|++.+.+...  .+. +|...+..+.+.++++.+++++    .++.|++|+
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~----~~~~i~i~~   79 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLK-GHTGPVRDVAASADGTYLASGS----SDKTIRLWD   79 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--EEe-cCCcceeEEEECCCCCEEEEEc----CCCeEEEEE
Confidence            6899999999999999999999 9999999998765443  232 6788888888888887777776    689999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +.+++.+..+. +...+.++.|++++.+++   .++.|++||+.+++....+..+...+..++++|++.  ++++ +..+
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~-~~~~  156 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVAS-SSQD  156 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEE-EcCC
Confidence            99888887777 777999999999987777   499999999998888888888888889999998844  3554 5569


Q ss_pred             eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          159 GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       159 ~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      +.+++|+.. .+....+..|...+.+++|+|+++.+++++.++. |++||+++++.+..+..  +...+.+++|+|++.+
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~  233 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYL  233 (289)
T ss_pred             CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCCcE
Confidence            999998876 5667778888889999999999999999999999 99999999988888865  6679999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248          238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR  317 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  317 (359)
                      +++++.||.|++|++.+++..                                          ..+..+...+..++|+|
T Consensus       234 ~~~~~~~~~i~i~~~~~~~~~------------------------------------------~~~~~~~~~i~~~~~~~  271 (289)
T cd00200         234 LASGSEDGTIRVWDLRTGECV------------------------------------------QTLSGHTNSVTSLAWSP  271 (289)
T ss_pred             EEEEcCCCcEEEEEcCCceeE------------------------------------------EEccccCCcEEEEEECC
Confidence            998888999999999875521                                          01223445789999999


Q ss_pred             cCCEEEEEecCCeEEEEE
Q 018248          318 QNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       318 ~~~~l~~~~~dg~i~v~~  335 (359)
                      +++.|++++.||.+++|+
T Consensus       272 ~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         272 DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCEEEEecCCCeEEecC
Confidence            999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=225.54  Aligned_cols=281  Identities=15%  Similarity=0.175  Sum_probs=232.7

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|++.|+.+.|+|+|.+||+|+ |..|.+|+.....+.+ ..+. ||.+.|.-+.+..+++.++.++    .|.+|+.|
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~g----tDk~v~~w  117 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCG----TDKTVRGW  117 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEec----CCceEEEE
Confidence            45899999999999999999999 9999999976433332 2333 8999999999999999988888    79999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      |.++|+.++.++ |..-|+.+..+.-|..++    .|+++++||+++...+++++. .-++..+.|...++.  +.+ |.
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~q--v~s-gg  193 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQ--VIS-GG  193 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccc--eee-cc
Confidence            999999999999 888899888666666665    899999999998888777743 334566777777776  555 66


Q ss_pred             CCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----cEEEEeecCCCCcc--eEEE
Q 018248          157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----SLLQEMRRGAERAE--IYSL  229 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----~~~~~~~~~~~~~~--i~~~  229 (359)
                      -|+.|++|+.+. .....+.+|..+|+.+..+|+|.++.+-+.|.+ +++||++..    .++..+.++.|.-.  ....
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c  272 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC  272 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence            799999998854 667888999999999999999999999999999 999998753    45777777655543  4567


Q ss_pred             EecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc
Q 018248          230 AFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV  309 (359)
Q Consensus       230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (359)
                      +|+|+++.+.+|+.|..+++||.....-.                                  |.        +..|.+.
T Consensus       273 swsp~~~~i~ags~dr~vyvwd~~~r~~l----------------------------------yk--------lpGh~gs  310 (338)
T KOG0265|consen  273 SWSPNGTKITAGSADRFVYVWDTTSRRIL----------------------------------YK--------LPGHYGS  310 (338)
T ss_pred             eccCCCCccccccccceEEEeecccccEE----------------------------------EE--------cCCccee
Confidence            89999999999999999999999886511                                  11        2335689


Q ss_pred             EEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          310 QYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       310 v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      |+.+.|+|...+|.+++.|.+|++=.+
T Consensus       311 vn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  311 VNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             EEEeeecCCCcEEEEeccCceeEeecc
Confidence            999999999999999999999987544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=221.94  Aligned_cols=293  Identities=14%  Similarity=0.149  Sum_probs=240.6

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      -|.|..+++-+.|+.+|.+|.+++ |....+|-..+++.+  -++. ||.+.|.++++.++...++..+    .|.++++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGS----AD~t~kL   78 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGS----ADQTAKL   78 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecc----ccceeEE
Confidence            367999999999999999999999 999999988777666  4454 9999999999999888888777    7899999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE--------ecCeEEEEEcc-------cceeeeeEeccCCCceeeeeecC
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV--------LNQKVYVYNFT-------DLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                      ||+++|+.+..++.+.+|..+.|+++|.+++        ..+.|.++|++       ..++...+..+...+..+-|.|.
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            9999999999999999999999999998776        45689999997       34567777778888888999998


Q ss_pred             CCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                      ++.  +++ |.++|.|.+|+...  ..+...+.|...|+.++++||..++++++.|.+ -++||..+.+.++++..   .
T Consensus       159 ~~~--ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~t---e  231 (327)
T KOG0643|consen  159 GET--IIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTT---E  231 (327)
T ss_pred             CCE--EEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeee---c
Confidence            875  565 88999999988775  455666889999999999999999999999999 99999999999999984   5


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEec--cccee
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS--KWSMA  301 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  301 (359)
                      .+|++.+++|....++.|+....   -|+.+....                     .+      .+-.+++..  +..+.
T Consensus       232 ~PvN~aaisP~~d~VilgGGqeA---~dVTTT~~r---------------------~G------KFEArFyh~i~eEEig  281 (327)
T KOG0643|consen  232 RPVNTAAISPLLDHVILGGGQEA---MDVTTTSTR---------------------AG------KFEARFYHLIFEEEIG  281 (327)
T ss_pred             ccccceecccccceEEecCCcee---eeeeeeccc---------------------cc------chhhhHHHHHHHHHhc
Confidence            79999999998888777764332   222222100                     00      011111111  13456


Q ss_pred             EEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          302 QFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       302 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ..+.|-++|+++||+|+|+..++|++||.|++..++.
T Consensus       282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            6788889999999999999999999999999998875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=220.88  Aligned_cols=245  Identities=9%  Similarity=0.130  Sum_probs=208.0

Q ss_pred             eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC-----CccEEeeec-cCcceeEEEEecceeEEE---
Q 018248           41 MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH-----ENRYLGELS-FRSEVKNVRLRRDRIVVV---  111 (359)
Q Consensus        41 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~~~---  111 (359)
                      ....++ +|.+.|..++..+....+++ +.+  .|.++.+|++.     .|..++.++ |...|..+..++++++.+   
T Consensus         7 l~~tl~-gh~d~Vt~la~~~~~~~~l~-sas--rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    7 LRGTLE-GHTDWVTALAIKIKNSDILV-SAS--RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             eeeeec-CCCceEEEEEeecCCCceEE-Ecc--cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            334555 99999999998877433333 222  68999999865     366788888 999999999999999888   


Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc--cccccEEEEccC
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH--ASRIASIAMTLD  189 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~--~~~i~~~~~s~~  189 (359)
                      .|+.+++||+.+++..+.|.+|...+..++++++...  +++ |+.|.++++|+.-+.+..++..+  ...|.|+.|+|+
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q--ivS-GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ--IVS-GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCce--eec-CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCC
Confidence            9999999999999999999999999999999999887  665 99999999999998887777655  789999999998


Q ss_pred             --CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccC
Q 018248          190 --GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSA  267 (359)
Q Consensus       190 --~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  267 (359)
                        ..+|++++.|++ |++||+++.+....+.+  |.+.++.+++||||..+++|+.||.+.+||++.++...        
T Consensus       160 ~~~p~Ivs~s~Dkt-vKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly--------  228 (315)
T KOG0279|consen  160 ESNPIIVSASWDKT-VKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY--------  228 (315)
T ss_pred             CCCcEEEEccCCce-EEEEccCCcchhhcccc--ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE--------
Confidence              679999999999 99999999999999987  78899999999999999999999999999999987321        


Q ss_pred             CCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          268 SEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                               ++          -+...|++++|+|+...|+.+.+.+ |+||++++.
T Consensus       229 -------------------------sl----------~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~  264 (315)
T KOG0279|consen  229 -------------------------SL----------EAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESK  264 (315)
T ss_pred             -------------------------ec----------cCCCeEeeEEecCCceeEeeccCCc-eEEEeccch
Confidence                                     11          1236789999999966666666554 999999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-36  Score=239.04  Aligned_cols=284  Identities=10%  Similarity=0.132  Sum_probs=235.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +.|.++|+-+.||++|++||+++ |.+.-+|.+..... ....++. ||..+|..+.|+|+.++++.++    .+..+++
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg----~~e~~~l  295 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACG----FDEVLSL  295 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecC----chHheee
Confidence            57999999999999999999999 99999999864433 4445665 9999999999999999999888    6788999


Q ss_pred             EECCCccEEeeecc--CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccC-CCceeeeeecCCCccEEEec
Q 018248           81 WDDHENRYLGELSF--RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVV-NPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ||+.+|.....+.+  ...+.+.+|.|||..++   .|++|..||+ +|+.+...++-. ..+..+++++|++.+++++ 
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~-  373 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVT-  373 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcEEEEEe-
Confidence            99999999999884  48899999999998777   8999999998 555555555433 3477899999999866655 


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-  233 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-  233 (359)
                        .|..+++++.....-+.+..-..+|+++++|.|++++.+-=.+.. |.+||++....++.+.++.....+-.-+|.- 
T Consensus       374 --~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~  450 (519)
T KOG0293|consen  374 --VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG  450 (519)
T ss_pred             --cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence              588999988776655545555678999999999999998888888 9999999888888888755445566666754 


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      +..++++|++|+.|+||+..+++..                                          +.+..|...|+++
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll------------------------------------------~~LsGHs~~vNcV  488 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLL------------------------------------------AVLSGHSKTVNCV  488 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCcee------------------------------------------EeecCCcceeeEE
Confidence            5589999999999999999998732                                          2245567889999


Q ss_pred             eecc-cCCEEEEEecCCeEEEEEeCC
Q 018248          314 GFGR-QNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       314 ~~s~-~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      +|+| +..++|+|++||+|+||...+
T Consensus       489 swNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  489 SWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999 457899999999999997764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.1e-35  Score=253.37  Aligned_cols=284  Identities=15%  Similarity=0.221  Sum_probs=239.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..+...|.++.|+++|+.+++++ ++.+++|+....+......+. +|...|..++|++++..++.++    .|++|++|
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s----~D~tiriw  230 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGS----DDKTLRIW  230 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEec----CCceEEEe
Confidence            34578999999999999999998 999999999765522234443 8999999999999999777776    79999999


Q ss_pred             EC-CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DD-HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      |+ ..+..++.++ |...|++++|+|++++++   .|++|++||+++++++..+..|...+..+++++++..  +++ ++
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~--l~s-~s  307 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL--LVS-AS  307 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE--EEE-cC
Confidence            99 5558889998 999999999999997777   8999999999999999999999999999999999875  555 56


Q ss_pred             CCeeEEEEecCCee---eEEeeccccc--ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-cceEEEE
Q 018248          157 LKGQVRVEDYGTKK---SKYITAHASR--IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER-AEIYSLA  230 (359)
Q Consensus       157 ~d~~v~~~~~~~~~---~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~  230 (359)
                      .|+.|++|+.....   ...+..+...  +++++|+|++.++++++.|+. +++||+..+..+..+..+... ..+.+..
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEeccc
Confidence            79999999988765   4566666555  999999999999999999999 999999999999999874322 2455666


Q ss_pred             ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCc
Q 018248          231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENV  309 (359)
Q Consensus       231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  309 (359)
                      .++.++++++++.|+.|++|++.++....                                          .+..+ ...
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~------------------------------------------~l~~h~~~~  424 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQ------------------------------------------RLEGHSKAA  424 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhh------------------------------------------hhcCCCCCc
Confidence            78899999999999999999999865321                                          12233 457


Q ss_pred             EEEeeecccCCEEEEEe--cCCeEEEEEeC
Q 018248          310 QYLVGFGRQNNTIVIVG--LDGSYYKCEFD  337 (359)
Q Consensus       310 v~~~~~s~~~~~l~~~~--~dg~i~v~~~~  337 (359)
                      +..++++|..+++++++  .|+.+++|..+
T Consensus       425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            78899999999999999  69999999764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-34  Score=242.74  Aligned_cols=322  Identities=16%  Similarity=0.170  Sum_probs=255.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|-..|.++.|+.|.++|++|+ |-.+++|.++..+......+. ||.+.|...-+..+...+..++    .||.+.+|.
T Consensus       143 g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvs----kdG~l~~W~  217 (893)
T KOG0291|consen  143 GHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVS----KDGALFVWT  217 (893)
T ss_pred             CCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc-CCCcceEEEEeccCcceEEEEe----cCceEEEEE
Confidence            4678899999999999999999 999999999987776556666 9999998888887888888888    899999997


Q ss_pred             CCC-----------------------ccE-----E------eeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc
Q 018248           83 DHE-----------------------NRY-----L------GELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL  124 (359)
Q Consensus        83 ~~~-----------------------~~~-----~------~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~  124 (359)
                      ...                       ++.     .      .-+. ....+++.+|++...+++   ..|...+|++..-
T Consensus       218 ~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f  297 (893)
T KOG0291|consen  218 CDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF  297 (893)
T ss_pred             ecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCc
Confidence            651                       111     0      0011 236789999999988887   8899999999999


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLI  203 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i  203 (359)
                      .+++.+.....++..++|+..|+.  +|..++.-|.+-||....+ -+...++|-..+++++++|||+++|+|++||. |
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDW--iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK-V  374 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDW--IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK-V  374 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCE--EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc-E
Confidence            999999988888999999888887  6665556789999888764 35556889999999999999999999999999 9


Q ss_pred             EEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCC-----CccccCCCCCccCCCCC
Q 018248          204 RVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGT-----SKLHSASEPNLSSKNSS  278 (359)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  278 (359)
                      +|||..++-++.+|..  |.+.|+.+.|+.+|+.|++++.||+|+.||+.....-...     .+..+.+..|.+...-+
T Consensus       375 KvWn~~SgfC~vTFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA  452 (893)
T ss_pred             EEEeccCceEEEEecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence            9999999999999987  8899999999999999999999999999999988765433     33334444443421110


Q ss_pred             -ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          279 -AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       279 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                       ....+... .|   ..+.......+..|+++|.+++|+|++..|++++.|.+|++|++-..
T Consensus       453 G~~d~F~If-vW---S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  453 GAQDSFEIF-VW---SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             eccceEEEE-EE---EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence             11111100 00   11222334447788999999999999999999999999999998654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.1e-35  Score=220.43  Aligned_cols=235  Identities=15%  Similarity=0.181  Sum_probs=205.8

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCC----cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPY----KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      ....|..++|+|.|+++|+|+ |+...||++.+.    .....+.+. ||.+-+.+..+.. .+.++..+    .|.+..
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~d-D~~ilT~S----GD~TCa  169 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLD-DNHILTGS----GDMTCA  169 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcC-CCceEecC----CCceEE
Confidence            356799999999999999999 999999999843    224445566 9999999999876 45555565    489999


Q ss_pred             EEECCCccEEeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           80 IWDDHENRYLGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        80 iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      +||+++++.+..+. |.+.|.++.++| +++.++   .|+..++||++.+...+.|.+|...++.+.|.|++..  +++ 
T Consensus       170 lWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a--fat-  246 (343)
T KOG0286|consen  170 LWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA--FAT-  246 (343)
T ss_pred             EEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe--eee-
Confidence            99999999999998 999999999999 777777   8999999999999999999999999999999999976  666 


Q ss_pred             CCCCeeEEEEecCC-eeeEEee--cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          155 GLLKGQVRVEDYGT-KKSKYIT--AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       155 g~~d~~v~~~~~~~-~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      |+.|+++++++.+. +.+..+.  ....+|++++||..|++|++|..|.. +.+||.-.++.+..+.+  |...|.++..
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvScl~~  323 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSCLGV  323 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEEEEE
Confidence            99999999977766 4444443  22458999999999999999999999 99999999999999987  8899999999


Q ss_pred             cCCCCEEEEEcCCCcEEEEE
Q 018248          232 SSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~  251 (359)
                      +|||.-+++|+.|.+++||.
T Consensus       324 s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  324 SPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCCcEEEecchhHheeecC
Confidence            99999999999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.1e-35  Score=246.39  Aligned_cols=295  Identities=13%  Similarity=0.213  Sum_probs=230.2

Q ss_pred             CCceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ..+|..++|+..|..||.|+  =|.+-||++.....++.+.   ||...+.+++.+|++..++..+    .||+|+|||.
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaTG~----eDgKVKvWn~  379 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIATGA----EDGKVKVWNT  379 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEecc----CCCcEEEEec
Confidence            46899999999999999999  3689999998755554444   8999999999999999888877    8999999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCce--eeeeecCCCccEEEecCCC
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTG--LCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~  157 (359)
                      ..+-++.++. |...|+.+.|+..++.++   .||+|+.||+...+..+++..+ .++.  +++..|.++  ++++ |+.
T Consensus       380 ~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGe--lV~A-G~~  455 (893)
T KOG0291|consen  380 QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGE--LVCA-GAQ  455 (893)
T ss_pred             cCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCC--EEEe-ecc
Confidence            9999999998 999999999999998887   8999999999999888888653 3444  445555554  3444 554


Q ss_pred             C-eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCC
Q 018248          158 K-GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       158 d-~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      | =.|.+|... ++.+..+.+|.++|.+++|+|++..|+++|.|.+ |++||+-.. ....++.   ....+..++|+||
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRPD  531 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcCC
Confidence            4 467778876 4667778999999999999999999999999999 999998654 3344454   4568999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeee-cceEEecccceeEEeecCCcEEEe
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGV-LPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      |+.|++++.||.|.+||.+...+....+....                  ...+. ....+...     -.......+.+
T Consensus       532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD------------------~~~gR~~~D~~ta~-----~sa~~K~Ftti  588 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKD------------------LSGGRKETDRITAE-----NSAKGKTFTTI  588 (893)
T ss_pred             CCeEEEEEecceEEEEEhhhceeeccccchhh------------------ccccccccceeehh-----hcccCCceEEE
Confidence            99999999999999999988764311000000                  00000 00000000     01112467889


Q ss_pred             eecccCCEEEEEecCCeEEEEEeCC
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .+|+||..|++||....|.+|+++.
T Consensus       589 ~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  589 CYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             EEcCCCCEEEecCCcccEEEEECch
Confidence            9999999999999999999999976

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.5e-35  Score=218.12  Aligned_cols=271  Identities=15%  Similarity=0.208  Sum_probs=222.7

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc-CCEEEEEecCCCCCCeEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR-SNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~~d~~i~i   80 (359)
                      +.|...|.+++|+.+|..|++|+ |+++.+|+++..+........ ||.+.|..++|.+. ++.++.++    .|.+|++
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas----~dk~ir~   91 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATAS----GDKTIRI   91 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEec----CCceEEE
Confidence            56889999999999999999999 999999999977555444444 88888888888864 45666666    5799999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      ||+.++++.........-.-+.|+|+|.+++   .|..|...|.++.+.....+. ...+.-++|+.+++ +++++.|  
T Consensus        92 wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd-~Fflt~G--  167 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSND-LFFLTNG--  167 (313)
T ss_pred             EEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCC-EEEEecC--
Confidence            9999999999998666666789999998887   888999999988877666543 23445677775444 4555433  


Q ss_pred             CeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      .|.|.| --...+++..+++|.....|+.|+|+|+++|+|+.|.. +.+||+...-+++.+..  +.-+|..+.||.||+
T Consensus       168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS~dg~  244 (313)
T KOG1407|consen  168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFSHDGR  244 (313)
T ss_pred             CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEeccCcc
Confidence            688888 33366899999999999999999999999999999998 99999999888888887  667999999999999


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                      +||+|++|..|-|=+++++...                                   ++..        ..++...++|+
T Consensus       245 ~lASaSEDh~IDIA~vetGd~~-----------------------------------~eI~--------~~~~t~tVAWH  281 (313)
T KOG1407|consen  245 MLASASEDHFIDIAEVETGDRV-----------------------------------WEIP--------CEGPTFTVAWH  281 (313)
T ss_pred             eeeccCccceEEeEecccCCeE-----------------------------------EEee--------ccCCceeEEec
Confidence            9999999999999999998732                                   1111        23567899999


Q ss_pred             ccCCEEEEEecC
Q 018248          317 RQNNTIVIVGLD  328 (359)
Q Consensus       317 ~~~~~l~~~~~d  328 (359)
                      |....||.+++|
T Consensus       282 Pk~~LLAyA~dd  293 (313)
T KOG1407|consen  282 PKRPLLAYACDD  293 (313)
T ss_pred             CCCceeeEEecC
Confidence            999999998874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-33  Score=263.14  Aligned_cols=289  Identities=13%  Similarity=0.181  Sum_probs=221.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc----c--eeeeecccCCCCceeEEEEecc-CCEEEEEecCCCCC
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK----P--IMRRDFDRNPRGGTQLVSMLFR-SNIICLVNSGPHQS   75 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----~--~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~~d   75 (359)
                      .|.+.|.+++|+|+|++||+|+ |+.|+||+.+...    .  .....+  .+...+..++|.+. +..++.++    .|
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~----~D  554 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSN----FE  554 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEe----CC
Confidence            4788999999999999999999 9999999976321    0  111222  23456777888754 45555555    68


Q ss_pred             CeEEEEECCCccEEeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248           76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      +.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+++++.+..+..+ ..+.++.|.+... .+
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g-~~  632 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG-RS  632 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC-CE
Confidence            999999999999888887 999999999997 666665   7999999999988888887754 4567777754332 33


Q ss_pred             EEecCCCCeeEEEEecCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC------cEEEEeecCCC
Q 018248          151 MACPGLLKGQVRVEDYGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG------SLLQEMRRGAE  222 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~------~~~~~~~~~~~  222 (359)
                      +++ |+.|+.|++|+.+..  ....+.+|...|.++.|. ++.+|++++.|+. |++||++.+      +.+..+.+  |
T Consensus       633 lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g--h  707 (793)
T PLN00181        633 LAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG--H  707 (793)
T ss_pred             EEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC--C
Confidence            565 678999999998653  456778999999999997 7889999999999 999999743      56777776  6


Q ss_pred             CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee-
Q 018248          223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA-  301 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  301 (359)
                      ...+..++|+|++++|++|+.|+.|++|+.....+..                      .+.         +....... 
T Consensus       708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~----------------------s~~---------~~~~~~~~~  756 (793)
T PLN00181        708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL----------------------SYK---------FKTIDPVSG  756 (793)
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE----------------------EEe---------cccCCcccc
Confidence            7789999999999999999999999999987654210                      000         00000000 


Q ss_pred             -EEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          302 -QFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       302 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                       ....+...|.+++|+|++..|++|+.||.|++|++
T Consensus       757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence             01112357899999999999999999999999976

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.4e-33  Score=225.60  Aligned_cols=250  Identities=16%  Similarity=0.255  Sum_probs=209.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .+|..+++-..|||.|.++|+|. .|.||||+....+.++..+++ .-.++|..++|.+++..++.++.|+..-|.+.+|
T Consensus        56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~-v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~  134 (603)
T KOG0318|consen   56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ-VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW  134 (603)
T ss_pred             ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee-ecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence            47899999999999999999999 999999999876666666655 5589999999999999999999886433555566


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      |  +|..+.++. |...|.++.|-|...+-+    .|+.|.+|+-..-+--.++..|...+.++.++|++..  ++++| 
T Consensus       135 D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~--Fat~g-  209 (603)
T KOG0318|consen  135 D--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR--FATAG-  209 (603)
T ss_pred             c--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--EEEec-
Confidence            5  788888888 999999999999875443    8999999997666666777889999999999999876  66644 


Q ss_pred             CCeeEEEE-ecCCeeeEEee---cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec-------------
Q 018248          157 LKGQVRVE-DYGTKKSKYIT---AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR-------------  219 (359)
Q Consensus       157 ~d~~v~~~-~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~-------------  219 (359)
                      .||++.++ -.++..+..+.   +|++.|.+++|+||++.+++++.|.+ ++|||+.+.++++++..             
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqvG~lW  288 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQVGCLW  288 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEEEEEE
Confidence            59999994 45667777776   89999999999999999999999999 99999987665544221             


Q ss_pred             ----------------------------CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248          220 ----------------------------GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP  259 (359)
Q Consensus       220 ----------------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  259 (359)
                                                  ..|...|+++..+||+++|++|+.||.|.-|+..++...+
T Consensus       289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence                                        1267899999999999999999999999999999887553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.5e-35  Score=248.47  Aligned_cols=241  Identities=17%  Similarity=0.237  Sum_probs=207.0

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc-------------------------------cEEeee-ccCcc
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN-------------------------------RYLGEL-SFRSE   97 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-------------------------------~~~~~~-~~~~~   97 (359)
                      ...+.+..++.+...++..-    .|..|++|.+...                               ....++ .|.++
T Consensus       378 ~~~v~ca~fSddssmlA~Gf----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGF----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             CCcceeEeecCCcchhhccc----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence            34567777877777555444    5789999986521                               111222 38899


Q ss_pred             eeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEE
Q 018248           98 VKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKY  173 (359)
Q Consensus        98 v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~  173 (359)
                      |....|+|+.++++   .|+++++|.+.+...+..+++|..+++.+.|+|.|  .++|+ ++.|++.++|..+. .+++.
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFat-as~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFAT-ASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEe-cCCCceeeeeecccCCchhh
Confidence            99999999999998   89999999999999999999999999999999876  45777 67899999998765 78888


Q ss_pred             eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          174 ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       174 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      +.+|-+.|.|++|+|+..|+++||.|.+ |++||+.+|..++.|.+  |.++|.+++|||+|++|++|+.||.|++||+.
T Consensus       531 faghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             hcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            9999999999999999999999999999 99999999999999987  88999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEE
Q 018248          254 VDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYK  333 (359)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  333 (359)
                      ++...                                          ..++.|.+.|.++.|+.||..|++|+.|.+|++
T Consensus       608 ~~~~v------------------------------------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l  645 (707)
T KOG0263|consen  608 NGSLV------------------------------------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL  645 (707)
T ss_pred             CCcch------------------------------------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence            98732                                          114456789999999999999999999999999


Q ss_pred             EEeCCCCCC
Q 018248          334 CEFDPMKGG  342 (359)
Q Consensus       334 ~~~~~~~~~  342 (359)
                      |++....+.
T Consensus       646 WD~~~~~~~  654 (707)
T KOG0263|consen  646 WDLTKVIEL  654 (707)
T ss_pred             EEchhhccc
Confidence            998765443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=244.41  Aligned_cols=288  Identities=17%  Similarity=0.229  Sum_probs=219.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..||.-|+|+|.|..+++|+ |+.+++||+..+...  ..|+ ||.+.|..+.|.++.+...+.++.  .|+.+++||
T Consensus       103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t--h~fk-G~gGvVssl~F~~~~~~~lL~sg~--~D~~v~vwn  177 (775)
T KOG0319|consen  103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT--HSFK-GHGGVVSSLLFHPHWNRWLLASGA--TDGTVRVWN  177 (775)
T ss_pred             ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE--EEec-CCCceEEEEEeCCccchhheeecC--CCceEEEEE
Confidence            5999999999999999999999 999999999975444  6676 999999999999998887777766  589999999


Q ss_pred             CCCccE-Eeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee----------------------------
Q 018248           83 DHENRY-LGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ----------------------------  129 (359)
Q Consensus        83 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~----------------------------  129 (359)
                      +.+... +..+. |.+.|+++.|.+++..++   .|..+.+||+.+.+....                            
T Consensus       178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG  257 (775)
T KOG0319|consen  178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAG  257 (775)
T ss_pred             cccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEec
Confidence            986544 66666 888999999988876555   777777777633210000                            


Q ss_pred             --------------------------------------------------------------------------------
Q 018248          130 --------------------------------------------------------------------------------  129 (359)
Q Consensus       130 --------------------------------------------------------------------------------  129 (359)
                                                                                                      
T Consensus       258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~  337 (775)
T KOG0319|consen  258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEES  337 (775)
T ss_pred             CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccc
Confidence                                                                                            


Q ss_pred             -----------------------EeccC----------------------------------------------CCceee
Q 018248          130 -----------------------IETVV----------------------------------------------NPTGLC  140 (359)
Q Consensus       130 -----------------------~~~~~----------------------------------------------~~~~~~  140 (359)
                                             +.+|.                                              +.+..+
T Consensus       338 ~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav  417 (775)
T KOG0319|consen  338 HLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV  417 (775)
T ss_pred             eEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee
Confidence                                   00111                                              111111


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecCCe------eeE----EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYGTK------KSK----YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~------~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~  210 (359)
                      +++..+. .++++ ++.|+++++|.....      ...    ....|...|++++++|+.+++||||.|.+ .+||++++
T Consensus       418 a~~~~~a-sffvs-vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKiW~le~  494 (775)
T KOG0319|consen  418 AGSKLGA-SFFVS-VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKIWDLEQ  494 (775)
T ss_pred             eecccCc-cEEEE-ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eeeecccC
Confidence            1111111 11121 334566666655441      111    23468999999999999999999999999 99999999


Q ss_pred             CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248          211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL  290 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (359)
                      ......+.+  |...|.++.|+|..+.|+|+|.|++|+||.+.+....                                
T Consensus       495 ~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl--------------------------------  540 (775)
T KOG0319|consen  495 LRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL--------------------------------  540 (775)
T ss_pred             ceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEeccceee--------------------------------
Confidence            999999998  8889999999999999999999999999999997632                                


Q ss_pred             ceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEE
Q 018248          291 PKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQ  346 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~  346 (359)
                                .++..|...|..+.|-.+|.+|+++++||.+++|++..   ++|++
T Consensus       541 ----------kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt---~eC~~  583 (775)
T KOG0319|consen  541 ----------KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT---NECEM  583 (775)
T ss_pred             ----------eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc---hhhhh
Confidence                      12555677889999999999999999999999999986   56654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.9e-35  Score=236.81  Aligned_cols=281  Identities=11%  Similarity=0.142  Sum_probs=234.8

Q ss_pred             CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      ..|+..|+++.|.| .+.+|++++ |+.|+||++-. ...+.+++. ||..+|..++|+.++..++.++    .|+.|++
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~s----fD~~lKl  284 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFK-GHRKPVRDASFNNCGTSFLSAS----FDRFLKL  284 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhh-cchhhhhhhhccccCCeeeeee----cceeeee
Confidence            35899999999999 888999999 99999999976 334446776 9999999999999999888888    8999999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecce-e-EEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDR-I-VVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      ||+++|+++..+.....+.++.|+|++ + +++  .|+.|+.||+++++.++.+..|-+.+..+.|-+.+..  +++ .+
T Consensus       285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r--Fis-sS  361 (503)
T KOG0282|consen  285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR--FIS-SS  361 (503)
T ss_pred             eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce--Eee-ec
Confidence            999999999999999999999999988 3 333  8999999999999999999989999999999998887  443 44


Q ss_pred             CCeeEEEEecCCeeeEEe--ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC---cEEEEeecCCCCcceEEEEe
Q 018248          157 LKGQVRVEDYGTKKSKYI--TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG---SLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       157 ~d~~v~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~  231 (359)
                      .|+.+++|..+......+  ..+.....++..+|++++++.-+.|.. |.+|.+...   ...+.++++.-.+.-..+.|
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            799999998876443332  233445678999999999999999999 999986542   23345666555677788999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY  311 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (359)
                      ||||++|++|+.||.+.+||.++.+..                                          ..++.|.+.+.
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~kl~------------------------------------------~~lkah~~~ci  478 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTTKLV------------------------------------------SKLKAHDQPCI  478 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhhhhh------------------------------------------hccccCCcceE
Confidence            999999999999999999999986622                                          12455667889


Q ss_pred             Eeeeccc-CCEEEEEecCCeEEEEE
Q 018248          312 LVGFGRQ-NNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       312 ~~~~s~~-~~~l~~~~~dg~i~v~~  335 (359)
                      .+.|+|. ...|++++.||.|++|+
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            9999995 47789999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=234.67  Aligned_cols=277  Identities=10%  Similarity=0.147  Sum_probs=234.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.+.+.|-++.|+|....++++- +|.+.|||.++..........   .-+|....+....+.++..+    .|..|++|
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~---~~PvRa~kfiaRknWiv~Gs----DD~~IrVf   82 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS---EVPVRAAKFIARKNWIVTGS----DDMQIRVF   82 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec---ccchhhheeeeccceEEEec----CCceEEEE
Confidence            35789999999999999999998 999999999986666444443   67888888888888888777    79999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc-ceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +..+++.+..+. |++-|++++.+|...+++   .|-.|++||-+. -.+.+++++|.+-+..++|.|..... +|+ ++
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~nt-FaS-~s  160 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNT-FAS-AS  160 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccc-eee-ee
Confidence            999999999999 999999999999998888   788999999854 46788899999999999999977653 454 77


Q ss_pred             CCeeEEEEecCC-eeeEEeecccccccEEEEccCC--cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDG--RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      -|++|++|.... .+..++.+|...|+|+.+-+-|  .+|++|++|.. |+|||.++..+++++.+  |...|..+.|+|
T Consensus       161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp  237 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFFHP  237 (794)
T ss_pred             ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEecC
Confidence            899999999875 6678899999999999998754  59999999999 99999999999999998  677899999999


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      .-.++++|++||+++||+-.+-+...                                          .+....+.++++
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty~lE~------------------------------------------tLn~gleRvW~I  275 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTYKLEK------------------------------------------TLNYGLERVWCI  275 (794)
T ss_pred             CCcEEEEecCCccEEEecCcceehhh------------------------------------------hhhcCCceEEEE
Confidence            99999999999999999998865321                                          012223456777


Q ss_pred             eecccCCEEEEEecCCeEEE
Q 018248          314 GFGRQNNTIVIVGLDGSYYK  333 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v  333 (359)
                      +-.+.++.+++|.++|.+.+
T Consensus       276 ~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  276 AAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             eecCCCCeEEEeccCCcEEE
Confidence            77777777777777776654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.7e-33  Score=215.17  Aligned_cols=278  Identities=12%  Similarity=0.143  Sum_probs=230.4

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|+.+|.+++.+|+.+++++|+ |..-.+|+..+++....  +. +|...|.++.|++++.+++...    -+|.|+||
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--lt-gHKDSVt~~~FshdgtlLATGd----msG~v~v~  133 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LT-GHKDSVTCCSFSHDGTLLATGD----MSGKVLVF  133 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ec-CCCCceEEEEEccCceEEEecC----CCccEEEE
Confidence            46999999999999999999999 99999999999885543  43 9999999999999988887766    68999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +..++.....+. .-..+.-+.|+|.+.+++   .||.+.+|.+.++...+.+.+|..++++-.|.|+++.  +++ +..
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr--~~t-gy~  210 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKR--ILT-GYD  210 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCce--EEE-Eec
Confidence            999998888886 557788899999988777   8999999999888888999999999999999999987  444 667


Q ss_pred             CeeEEEEecCC-eeeEEee---------------------------------------------------cccccccEEE
Q 018248          158 KGQVRVEDYGT-KKSKYIT---------------------------------------------------AHASRIASIA  185 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~---------------------------------------------------~~~~~i~~~~  185 (359)
                      ||+|++|+... +++..+.                                                   .+...+.++.
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            99999998653 2222221                                                   1122233333


Q ss_pred             ---EccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCC
Q 018248          186 ---MTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTS  262 (359)
Q Consensus       186 ---~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  262 (359)
                         ++..-.+.|+|+-||+ |.|||+...+....+.   |+.+|..+.|-+ ..+|++++.+|.|+.||.++++..    
T Consensus       291 ~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~----  361 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK----  361 (399)
T ss_pred             hcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceE----
Confidence               3334457889999999 9999998888877776   778899999998 789999999999999999998721    


Q ss_pred             ccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          263 KLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                                                            ..+..|...|...+++|+.+++++++.|++.+||.++
T Consensus       362 --------------------------------------~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  362 --------------------------------------FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             --------------------------------------EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                                                  1255677889999999999999999999999999764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-33  Score=204.43  Aligned_cols=274  Identities=14%  Similarity=0.205  Sum_probs=222.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .+.++|.++.|+-||++.++++ |.+|++|+...+..+  ++.. ||..+|..++.+++...++.++    .|..+.+||
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--ktYs-ghG~EVlD~~~s~Dnskf~s~G----gDk~v~vwD   87 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--KTYS-GHGHEVLDAALSSDNSKFASCG----GDKAVQVWD   87 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--eeec-CCCceeeeccccccccccccCC----CCceEEEEE
Confidence            4788999999999999998888 999999998876555  5565 9999999999998888777666    589999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc--ceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD--LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +.+|+.++.+. |..+|+.++|+.+...++   .|.++++||.++  .++++.+......+..+.++...    ++. |+
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~he----Iva-GS  162 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHE----IVA-GS  162 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccE----EEe-ec
Confidence            99999999999 999999999999998888   899999999954  56788887777777766665432    444 88


Q ss_pred             CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          157 LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       157 ~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      .||+++.++.+...+.. .--..+|++++|++|++..+.++.|++ +++.|-.+|+.+..++++.....-...+++....
T Consensus       163 ~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             cCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeeeeecccce
Confidence            99999997766543322 223468999999999999999999999 9999999999999999865555556677877788


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc-EEEeee
Q 018248          237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV-QYLVGF  315 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~  315 (359)
                      .+++|++||.|++||+.......                                          .++.+... +..+++
T Consensus       241 hV~sgSEDG~Vy~wdLvd~~~~s------------------------------------------k~~~~~~v~v~dl~~  278 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDETQIS------------------------------------------KLSVVSTVIVTDLSC  278 (307)
T ss_pred             eEEeccCCceEEEEEeccceeee------------------------------------------eeccCCceeEEeeec
Confidence            99999999999999998876220                                          13333434 788999


Q ss_pred             cccCCEEEEEecCCeEEE
Q 018248          316 GRQNNTIVIVGLDGSYYK  333 (359)
Q Consensus       316 s~~~~~l~~~~~dg~i~v  333 (359)
                      +|.-..++++...+.+..
T Consensus       279 hp~~~~f~~A~~~~~~~~  296 (307)
T KOG0316|consen  279 HPTMDDFITATGHGDLFW  296 (307)
T ss_pred             ccCccceeEecCCceece
Confidence            998777777776664443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-33  Score=217.73  Aligned_cols=240  Identities=14%  Similarity=0.237  Sum_probs=214.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|.+.|..++|+..|+++|+++ |-.+++||.+...... +.+. ||...|.++.+.|.+++++.++    .|.+|+.|
T Consensus       147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~-gh~h~vS~V~f~P~gd~ilS~s----rD~tik~W  220 (406)
T KOG0295|consen  147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI-KSLI-GHEHGVSSVFFLPLGDHILSCS----RDNTIKAW  220 (406)
T ss_pred             hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH-HHhc-CcccceeeEEEEecCCeeeecc----cccceeEE
Confidence            36888999999999999999999 8779999998643332 2333 8999999999999998888777    89999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC----------
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG----------  147 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  147 (359)
                      ++.++.++.++. |...|..++.+.||.+++   .|.++++|-+.++++...+..|..++.+++|.|...          
T Consensus       221 e~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~  300 (406)
T KOG0295|consen  221 ECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS  300 (406)
T ss_pred             ecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence            999999999999 999999999999999999   889999999999988889999999999999987421          


Q ss_pred             ---ccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          148 ---PMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       148 ---~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                         ..++++ ++.|++|++|+.. +.++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++...+..  |+
T Consensus       301 ~~~~~~l~s-~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a--h~  376 (406)
T KOG0295|consen  301 TNGGQVLGS-GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA--HE  376 (406)
T ss_pred             CCCccEEEe-ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC--Cc
Confidence               134555 8899999998876 4788999999999999999999999999999999 99999999999999986  77


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      ..++++.|+.+..++++|+-|.++++|..
T Consensus       377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ceeEEEecCCCCceEEeccccceeeeeec
Confidence            79999999999999999999999999964

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-34  Score=228.69  Aligned_cols=243  Identities=14%  Similarity=0.138  Sum_probs=211.9

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|.|+.+|.+|.|+++|.++++|+ +|.|++|+.+-...   +.+...|...|..++++++...++.++    .|++|+|
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV---k~~~ahh~eaIRdlafSpnDskF~t~S----dDg~iki  206 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV---KIIQAHHAEAIRDLAFSPNDSKFLTCS----DDGTIKI  206 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---HHhhHhhhhhhheeccCCCCceeEEec----CCCeEEE
Confidence            478999999999999999999999 99999999874322   223324568999999999888888877    7999999


Q ss_pred             EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      ||....+....+. |.-.|.++.|+|...+++   .|+.|++||.++++++.++..|.+.|..+.|+++++  +|++ ++
T Consensus       207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N--~Llt-~s  283 (464)
T KOG0284|consen  207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN--WLLT-GS  283 (464)
T ss_pred             EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC--eeEE-cc
Confidence            9998888878887 999999999999987777   788999999999999999999999999999999884  4776 77


Q ss_pred             CCeeEEEEecC-CeeeEEeecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          157 LKGQVRVEDYG-TKKSKYITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       157 ~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      .|..+++++.+ .+.++.+++|+..++++.|+|- ..+|.+|+.||. |..|.+...+++..+.. .|...|++++|+|-
T Consensus       284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPl  361 (464)
T KOG0284|consen  284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPL  361 (464)
T ss_pred             CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeecccc
Confidence            99999997666 6888899999999999999994 558889999999 99999987777777763 48899999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCC
Q 018248          235 AQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |.+|++|+.|.++++|.-....
T Consensus       362 Ghil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  362 GHILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             ceeEeecCCCcceeeeccCCCC
Confidence            9999999999999999876543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.4e-34  Score=220.49  Aligned_cols=277  Identities=14%  Similarity=0.246  Sum_probs=216.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .....|+|+.+.  ...+++|. |++|+|||.++....  ..+. ||++.|.++.+  +..  ++++|+  .|.+|++||
T Consensus       195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqy--d~r--viisGS--SDsTvrvWD  263 (499)
T KOG0281|consen  195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQY--DER--VIVSGS--SDSTVRVWD  263 (499)
T ss_pred             ccCCceEEEEec--chhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeec--cce--EEEecC--CCceEEEEe
Confidence            346789999975  55789999 999999999875444  4444 99999887765  344  344444  689999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccce---eeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLK---LVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +++++++.++- |-..|..+.|+..-..-+ .|.+|.+||+....   +.+.+.+|...++.+.|+.  +  ++++ ++.
T Consensus       264 v~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIVs-ASg  338 (499)
T KOG0281|consen  264 VNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIVS-ASG  338 (499)
T ss_pred             ccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEEE-ecC
Confidence            99999999987 889999999986544444 99999999996543   3445678888888777643  3  4555 567


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      |.+|++|+.+. ..++++.+|+..|.|+.+  .++++++|+.|.+ |++||+..|.+++.+++  |+.-|.++.|  |.+
T Consensus       339 DRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRF--d~k  411 (499)
T KOG0281|consen  339 DRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--DNK  411 (499)
T ss_pred             CceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheee--cCc
Confidence            99999998875 778899999999999987  6899999999999 99999999999999998  7789999999  678


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                      .+++|+.||+|+|||+..+....                  ...+.+.               ...+.-+.|.|..+.|.
T Consensus       412 rIVSGaYDGkikvWdl~aaldpr------------------a~~~~~C---------------l~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  412 RIVSGAYDGKIKVWDLQAALDPR------------------APASTLC---------------LRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             eeeeccccceEEEEecccccCCc------------------ccccchH---------------HHhhhhccceeEEEeec
Confidence            99999999999999999876321                  0011110               00112234677888884


Q ss_pred             ccCCEEEEEecCCeEEEEEeCC
Q 018248          317 RQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       317 ~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                        ...|++.+.|.+|.||++..
T Consensus       459 --~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  459 --EFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             --ceEEEeccCCCeEEEEEcCC
Confidence              46899999999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.5e-33  Score=206.34  Aligned_cols=282  Identities=13%  Similarity=0.139  Sum_probs=232.7

Q ss_pred             CCCCCceEEEEEcc---CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            3 QPDPITIHHLALNQ---DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         3 ~~h~~~v~~~~~s~---~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      ..|..+|..++|||   +|-+|++++ |+.-.+-+-+++.-+  -+|. ||.+.|....+..+....+.++    .|-+-
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfe-ghkgavw~~~l~~na~~aasaa----adfta   83 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFE-GHKGAVWSATLNKNATRAASAA----ADFTA   83 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--Eeee-ccCcceeeeecCchhhhhhhhc----ccchh
Confidence            35899999999995   898999999 999888888887766  5666 9999999887755444444444    68999


Q ss_pred             EEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           79 MIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ++||.-+|..+..+.|..-|..++|+.|..+++   .+.-++|||++.. .+...+.+|.+.+..+.|....+.  +.+ 
T Consensus        84 kvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~--iLS-  160 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC--ILS-  160 (334)
T ss_pred             hhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce--EEe-
Confidence            999999999999999999999999999998888   6778999999654 456678889999998888876654  444 


Q ss_pred             CCCCeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          155 GLLKGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       155 g~~d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      ...|++|++|+.+.. .++.+. -..+|+++.++++|++|.++. .+. |.+||..+...++.++.   +..|.+..++|
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k~---P~nV~SASL~P  234 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYKM---PCNVESASLHP  234 (334)
T ss_pred             eccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeeccC---ccccccccccC
Confidence            358999999887664 444444 567899999999999886654 445 99999999999998884   57899999999


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      +...+++|++|..++.||..+++...                                 .+        -+.+.++|.++
T Consensus       235 ~k~~fVaGged~~~~kfDy~TgeEi~---------------------------------~~--------nkgh~gpVhcV  273 (334)
T KOG0278|consen  235 KKEFFVAGGEDFKVYKFDYNTGEEIG---------------------------------SY--------NKGHFGPVHCV  273 (334)
T ss_pred             CCceEEecCcceEEEEEeccCCceee---------------------------------ec--------ccCCCCceEEE
Confidence            99999999999999999999987431                                 00        13456899999


Q ss_pred             eecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                      .|+|||..-++|++||+|++|...+.+.
T Consensus       274 rFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  274 RFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EECCCCceeeccCCCceEEEEEecCCCc
Confidence            9999999999999999999999988543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8e-32  Score=209.82  Aligned_cols=239  Identities=15%  Similarity=0.199  Sum_probs=199.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|++.|+++.||.||.+||+|. +|.|+||+..++.......   .....+..+.|+|....++..+    .||.+.+|.
T Consensus       104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~----~DGsvWmw~  176 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGS----TDGSVWMWQ  176 (399)
T ss_pred             CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecccccEEEeec----CCCcEEEEE
Confidence            5999999999999999999999 9999999999877665443   2367788888888666555555    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC-----------------------
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN-----------------------  135 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-----------------------  135 (359)
                      +.++...+.+. |..++++=.|.|+|+.++   .||+|++||+.+++++..+....+                       
T Consensus       177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence            99977777777 999999999999999888   899999999999988877752110                       


Q ss_pred             ----------------------------CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEc
Q 018248          136 ----------------------------PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMT  187 (359)
Q Consensus       136 ----------------------------~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s  187 (359)
                                                  .+.++.+.|....+-|++.|+-||+|.||+.....++..-.|..+|..+.|-
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~  336 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWL  336 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEc
Confidence                                        0011122222222334444888999999999998899998999999999999


Q ss_pred             cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       188 ~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      + ..+|++++.+|. |+.||.++|+++.++.+  |...|.+++++|+.+++++++.|++.+||++.
T Consensus       337 ~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  337 N-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             C-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            8 789999999999 99999999999999998  78899999999999999999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.3e-32  Score=228.56  Aligned_cols=278  Identities=12%  Similarity=0.161  Sum_probs=226.4

Q ss_pred             CCceEEEEEc-cCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            6 PITIHHLALN-QDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         6 ~~~v~~~~~s-~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .+.|..|+|- |+.++||+++ .+.+++|++.+....   .+. ||...|..+...-++..++.++    .|+++++|.+
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~-GH~e~vlSL~~~~~g~llat~s----KD~svilWr~  394 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIP-GHTEAVLSLDVWSSGDLLATGS----KDKSVILWRL  394 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEe-CchhheeeeeecccCcEEEEec----CCceEEEEEe
Confidence            4678888874 7889999999 899999988765443   233 8999998888544454555555    7999999987


Q ss_pred             CCcc----EEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEccccee-----ee----eEeccCCCceeeeeecC
Q 018248           84 HENR----YLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKL-----VD----QIETVVNPTGLCDVSQN  145 (359)
Q Consensus        84 ~~~~----~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~-----~~----~~~~~~~~~~~~~~~~~  145 (359)
                      +++.    ++.... |...|.+++++..+. +++   .|.++++|++...+.     ..    +...|...+++++++|+
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence            5442    233334 899999999977653 333   899999999965211     11    22458889999999998


Q ss_pred             CCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      .+-  +|+ |+.|.+.++|+... .....+.+|+..|.++.|+|..+.+||+|.|++ |+||.+.++.++++|.+  |..
T Consensus       475 dkL--iAT-~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~eG--H~~  548 (775)
T KOG0319|consen  475 DKL--IAT-GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFEG--HTS  548 (775)
T ss_pred             Cce--EEe-cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeecC--ccc
Confidence            763  555 89999999988774 566788999999999999999999999999999 99999999999999998  889


Q ss_pred             ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      .|..+.|-.+|+.|++++.||.+++|++++.++..                                          ++.
T Consensus       549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~------------------------------------------tlD  586 (775)
T KOG0319|consen  549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM------------------------------------------TLD  586 (775)
T ss_pred             eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh------------------------------------------hhh
Confidence            99999999999999999999999999999988542                                          244


Q ss_pred             ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      .|.+.|++++-+|....+++|+.||.|.+|.=.++
T Consensus       587 ~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  587 AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             hccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            56789999999999999999999999999975443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-31  Score=229.28  Aligned_cols=280  Identities=13%  Similarity=0.191  Sum_probs=232.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +....|-.++|+|....++++- +|.|++||..-+..+  ..|. .|.++|..++|++....++  ++|  .|.+|++|+
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFV--SGG--DDykIkVWn   79 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFV--SGG--DDYKIKVWN   79 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEE--ecC--CccEEEEEe
Confidence            4567899999999999999999 999999999865444  4455 8999999999987766544  444  689999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      .++.+++.++. |-+-|+.+.|++.-.+++   .|.+|+||+.++++++..+.+|.+-|.+..|+|..+.  +++ ++-|
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl--IVS-aSLD  156 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL--IVS-ASLD  156 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce--EEE-eccc
Confidence            99999999988 999999999999998887   8899999999999999999999999999999998774  444 7789


Q ss_pred             eeEEEEecCCe------------------------------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          159 GQVRVEDYGTK------------------------------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       159 ~~v~~~~~~~~------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      -+|++|+..+-                              ....+.+|...|+-++|+|.-.++++|++|.. |++|.+
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm  235 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM  235 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence            99999997641                              02345789999999999999999999999999 999998


Q ss_pred             CCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEe
Q 018248          209 MDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFI  286 (359)
Q Consensus       209 ~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (359)
                      ...+  .+.+..+  |.+.|.++-|+|...++++.++|++|+|||+...+...                           
T Consensus       236 netKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~---------------------------  286 (1202)
T KOG0292|consen  236 NETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ---------------------------  286 (1202)
T ss_pred             ccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEeccccccee---------------------------
Confidence            6544  3445555  77899999999999999999999999999999877331                           


Q ss_pred             eeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          287 RGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                     +++-..+.-+.++-+|..+.+++ +.|+-+.||.++.+
T Consensus       287 ---------------tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkleRE  323 (1202)
T KOG0292|consen  287 ---------------TFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLERE  323 (1202)
T ss_pred             ---------------eeeccCCeEEEEEecCCcceeee-ecCCceEEEEEccc
Confidence                           12223456678888998777665 45555778888865

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=203.74  Aligned_cols=249  Identities=14%  Similarity=0.169  Sum_probs=205.2

Q ss_pred             cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC-CccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEc
Q 018248           47 RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH-ENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNF  121 (359)
Q Consensus        47 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~  121 (359)
                      +||.+.|..+.|.|++..++..+    .|..|.+|++. ..+....++ |.+.|..+.|.+++..++   .|.+++.||.
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG----~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGG----SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecC----CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            39999999999999877777666    79999999954 345566666 999999999999998887   8999999999


Q ss_pred             ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCC
Q 018248          122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGT  201 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  201 (359)
                      ++|+.++.++.|..-++.+.  |...+..++++|+.|+++++|+.+.+........+.+++++.|..++..+.+|+-|+.
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            99999999999999888776  6666666888899999999999887554444456778999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCcee
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAIS  281 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (359)
                       |++||++....+..+.+  |..+|+.+..+|+|.++.+-+.|.++++||++.-.+...                     
T Consensus       198 -ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R---------------------  253 (338)
T KOG0265|consen  198 -IKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR---------------------  253 (338)
T ss_pred             -eeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCCCCc---------------------
Confidence             99999999999999998  778999999999999999999999999999987553210                     


Q ss_pred             eeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          282 SFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                              ....+...  ...+   +-....++|+|++..+-+|+.|..+++|+...
T Consensus       254 --------~v~if~g~--~hnf---eknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  254 --------CVKIFQGH--IHNF---EKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             --------eEEEeecc--hhhh---hhhcceeeccCCCCccccccccceEEEeeccc
Confidence                    00111111  0001   12235689999999999999999999997654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-31  Score=226.09  Aligned_cols=278  Identities=14%  Similarity=0.166  Sum_probs=234.9

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +.|...|.++++|.|...+++|..+.++||+.++.+.+  +++.   .+.+.+..|.|.++++++..    ..|.+.++|
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kci--RTi~---~~y~l~~~Fvpgd~~Iv~G~----k~Gel~vfd  440 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCI--RTIT---CGYILASKFVPGDRYIVLGT----KNGELQVFD  440 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCCcEEEEEccCccee--EEec---cccEEEEEecCCCceEEEec----cCCceEEEE
Confidence            45889999999999999999999999999999987666  5654   56777788888888887776    679999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc-----ceee--------eeEeccCCCceeeeeecC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-----LKLV--------DQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-----~~~~--------~~~~~~~~~~~~~~~~~~  145 (359)
                      +.....+.+++ |.+.|++++.+||+..++   .|.+|++||+.-     +...        ++++ -...+.++.++|+
T Consensus       441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd  519 (888)
T KOG0306|consen  441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD  519 (888)
T ss_pred             eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC
Confidence            99999998888 999999999999988776   899999999832     1111        1222 2456778888888


Q ss_pred             CCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          146 AGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      ++.  ||. +--|++|++ +..+.+....+.+|.-||.|+.+|||+++++|||.|.. |++|-+.=|.+-+.+-+  |..
T Consensus       520 gk~--LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA--HdD  593 (888)
T KOG0306|consen  520 GKL--LAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA--HDD  593 (888)
T ss_pred             CcE--EEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc--ccC
Confidence            875  665 668999999 55555777789999999999999999999999999999 99999999999999887  778


Q ss_pred             ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      .|.++.|-|+...+.+++.|+.|+-||-+.-+..                                          ..+.
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i------------------------------------------q~L~  631 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI------------------------------------------QKLD  631 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceEEeechhhhhhh------------------------------------------eeec
Confidence            9999999999999999999999999998875522                                          1134


Q ss_pred             ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .|...|++++.+|+|.++++++.|.+|++|.-..
T Consensus       632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            4567899999999999999999999999998654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-29  Score=193.94  Aligned_cols=278  Identities=15%  Similarity=0.237  Sum_probs=219.1

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ....|.++.|+++|.++++++ |..++|||...++......   .+...+..+++....+.++.++..  .|.+|+..++
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk--~d~tIryLsl   87 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTK--EDDTIRYLSL   87 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCC--CCCceEEEEe
Confidence            468899999999999999988 8899999999877664433   346788888998888877777654  5899999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      .+++.++-+. |...|.+++.+|-+..++   .|++|++||++..++...+.....  .++++.|.|  +++|. +...+
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~G--LifA~-~~~~~  162 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEG--LIFAL-ANGSE  162 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCC--cEEEE-ecCCC
Confidence            9999999999 999999999999776655   899999999998887777665443  456777766  45665 44455


Q ss_pred             eEEEEecCC---eeeEEee---cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc-ceEEEEec
Q 018248          160 QVRVEDYGT---KKSKYIT---AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA-EIYSLAFS  232 (359)
Q Consensus       160 ~v~~~~~~~---~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~s  232 (359)
                      .|++++.+.   .+...+.   +.....+.+.|||||++|+.+...+. +++.|.-+|..+..+....... --.+..|+
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            899977654   4444443   34667899999999999999999999 9999999999998887643333 22578899


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCcEE
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENVQY  311 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~  311 (359)
                      ||++++++|+.||+|.+|+++++.+..                                          .++.+ .+++.
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~------------------------------------------~~~~~~~~~~~  279 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVA------------------------------------------VLRGPNGGPVS  279 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEee------------------------------------------EecCCCCCCcc
Confidence            999999999999999999998887321                                          12222 46778


Q ss_pred             EeeecccCCEEEEEecCCeEEEEEeC
Q 018248          312 LVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       312 ~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ++.|.|.  +...++++..+..|-.+
T Consensus       280 ~~~fnP~--~~mf~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  280 CVRFNPR--YAMFVSASSNLVFWLPD  303 (311)
T ss_pred             ccccCCc--eeeeeecCceEEEEecc
Confidence            8899996  55556677778888544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.6e-31  Score=196.12  Aligned_cols=237  Identities=16%  Similarity=0.253  Sum_probs=198.5

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +..|+..|.+++|+|.|++||+|+ |.++.||.-..++......++ ||..+|.+++|+.+++++++++    .|+.|.|
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCS----RDKSVWi  131 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCS----RDKSVWI  131 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEee----CCCeEEE
Confidence            457999999999999999999999 999999998877777778888 9999999999999999999999    8999999


Q ss_pred             EECCCc---cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcc---cceeeeeEeccCCCceeeeeecCCCccE
Q 018248           81 WDDHEN---RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFT---DLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        81 wd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      |.+..+   +++..++ |...|..+.|+|...+|+   .|++|++|+-.   +-++.+++.+|.+.+.+++|.+.+..  
T Consensus       132 We~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r--  209 (312)
T KOG0645|consen  132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR--  209 (312)
T ss_pred             EEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce--
Confidence            998754   5666777 999999999999887777   89999999875   34678899999999999999998876  


Q ss_pred             EEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC------cEEEEeecCCCCc
Q 018248          151 MACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG------SLLQEMRRGAERA  224 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~------~~~~~~~~~~~~~  224 (359)
                      +++ ++.|++++||......   -..|...+..+.|.  ...|++++.|+. |++|.....      +.+... .+.|..
T Consensus       210 l~s-~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~-~~aHe~  281 (312)
T KOG0645|consen  210 LVS-CSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGGDDA-IRLFKESDSPDEPSWNLLAKK-EGAHEV  281 (312)
T ss_pred             EEE-ecCCcceEeeeeccCc---chhcccceEeeeec--ccceEeccCCCE-EEEEEecCCCCCchHHHHHhh-hccccc
Confidence            666 6789999998754211   13467889999998  447999999999 999976542      112212 234778


Q ss_pred             ceEEEEecCC-CCEEEEEcCCCcEEEEEcc
Q 018248          225 EIYSLAFSSN-AQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       225 ~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~  253 (359)
                      .|++++|.|. ..+|+++++||.|++|.+.
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999994 6799999999999999875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-31  Score=226.40  Aligned_cols=287  Identities=13%  Similarity=0.146  Sum_probs=207.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCc----------eeEEEEec---cCCEEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGG----------TQLVSMLF---RSNIICLV   68 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~---~~~~~~~~   68 (359)
                      .+|++.|++|.||+||+|||+|+ |+.|+||.+...+.. ....  +....          +..+....   .......-
T Consensus       264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~--~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAE--GDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccc--cccchhhhhhhhccccCccccccccccccccccc
Confidence            37999999999999999999999 999999998642221 1110  00000          00000000   00000000


Q ss_pred             ecCCCCCCeEEEEECC----CccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeee
Q 018248           69 NSGPHQSNKVMIWDDH----ENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCD  141 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~----~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (359)
                      .+.  .... .+.+..    ..++++.+. |.+.|.++.|+.++.+|.  .|.+|++|++...+++..|. |..-|++++
T Consensus       341 ~~~--~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  341 KGS--QSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             ccc--CCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence            000  1111 122211    236777777 999999999999998888  99999999999999998885 788999999


Q ss_pred             eecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248          142 VSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      |+|-.+.. +++ |+-|+.|+||......+.....-..-|++++|+|||++.++|+.+|. +++|++...+....+....
T Consensus       417 FnPvDDry-FiS-GSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  417 FNPVDDRY-FIS-GSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             ecccCCCc-Eee-cccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEee
Confidence            99988763 444 99999999999999888888777799999999999999999999999 9999998877665544322


Q ss_pred             C------CcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEE
Q 018248          222 E------RAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYF  294 (359)
Q Consensus       222 ~------~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (359)
                      +      ...|+.+.|.|.. ..+++.+.|..|||+|.+......                                 .|
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~---------------------------------Kf  540 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH---------------------------------KF  540 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh---------------------------------hh
Confidence            2      2379999999743 346667889999999997655221                                 11


Q ss_pred             ecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          295 SSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      ...      + ....-....|+.||++|+++++|..||+|+++..
T Consensus       541 KG~------~-n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  541 KGF------R-NTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccc------c-cCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            111      0 0123356789999999999999999999998654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.8e-30  Score=225.56  Aligned_cols=243  Identities=19%  Similarity=0.290  Sum_probs=202.3

Q ss_pred             CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEc-
Q 018248           49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNF-  121 (359)
Q Consensus        49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~-  121 (359)
                      |...+.++.++++++.++..+    .++.+++|+....+  ..+.+. |...|.+++|+|++.+++   .|++|++||+ 
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~----~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAAS----SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEcc----CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            467888899999999877666    68999999997777  666665 899999999999998888   8999999999 


Q ss_pred             ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248          122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  200 (359)
                      ..+..++++.+|...+.+++|+|.++  .+++ |+.|++|++|+.+. .+.+.+.+|...|++++|++++++|++++.|+
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~--~i~S-gs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~  310 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGN--LLVS-GSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG  310 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCC--EEEE-ecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence            56689999999999999999999994  2555 88899999999885 88899999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248          201 TLIRVFNTMDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS  278 (359)
Q Consensus       201 ~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
                      . |++||+.++.  +...+.......+++++.|+|++++|++++.|+.+++||+..+....                   
T Consensus       311 ~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~-------------------  370 (456)
T KOG0266|consen  311 T-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG-------------------  370 (456)
T ss_pred             c-EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee-------------------
Confidence            9 9999999999  55666654322269999999999999999999999999999876321                   


Q ss_pred             ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                    .+.....-      .-.+....+++.+..+++|+.|+.|++|++..
T Consensus       371 --------------~~~~~~~~------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  371 --------------TYTGHSNL------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             --------------eecccCCc------ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence                          11111000      01234455588999999999999999998876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-30  Score=194.28  Aligned_cols=276  Identities=14%  Similarity=0.125  Sum_probs=213.1

Q ss_pred             eEEEEEccC-CCEEEEe--------cCCceEEEEcC-CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            9 IHHLALNQD-HGCFATG--------TETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         9 v~~~~~s~~-g~~l~~~--------~d~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      =+++.|||- ..+||++        +.|.+.|.++. .........+.  -.+.+..++|+.+...++++..   .||.+
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~---GDGSL   85 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--TEDGLFDVAWSENHENQVIAAS---GDGSL   85 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--cccceeEeeecCCCcceEEEEe---cCceE
Confidence            368899982 2333332        25778888886 33333333442  3677888999988766665555   47999


Q ss_pred             EEEECCC-ccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           79 MIWDDHE-NRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        79 ~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      ++||... ..+++.++ |..+|.++.|++..+...    .|++|++|+...++.+.++.+|...+...+|+|...++ ++
T Consensus        86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl-fa  164 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNL-FA  164 (311)
T ss_pred             EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCe-EE
Confidence            9999543 46788888 999999999998654333    89999999999999999999999999999999988763 33


Q ss_pred             ecCCCCeeEEEEecCC-eeeEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEE
Q 018248          153 CPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSL  229 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~  229 (359)
                      + .+.|+.+++|+.+. .....+..|...|.++.|+. +...|+||+.|+. |++||+++- .++.++.+  |.-.|..+
T Consensus       165 s-~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRkv  240 (311)
T KOG0277|consen  165 S-ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRKV  240 (311)
T ss_pred             E-ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEEE
Confidence            3 56799999988764 33444899999999999997 5568999999999 999999875 46677765  77899999


Q ss_pred             EecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248          230 AFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN  308 (359)
Q Consensus       230 ~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      +|||.. ..|++++.|-+++|||...+...                                         ..+...|.+
T Consensus       241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~-----------------------------------------~e~~~~HtE  279 (311)
T KOG0277|consen  241 KFSPHHASLLASASYDMTVRIWDPERQDSA-----------------------------------------IETVDHHTE  279 (311)
T ss_pred             ecCcchhhHhhhccccceEEecccccchhh-----------------------------------------hhhhhccce
Confidence            999964 58899999999999999876521                                         011223456


Q ss_pred             cEEEeeecc-cCCEEEEEecCCeEEEEE
Q 018248          309 VQYLVGFGR-QNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       309 ~v~~~~~s~-~~~~l~~~~~dg~i~v~~  335 (359)
                      -+..+.|++ ++.++|+.+.|+.++||+
T Consensus       280 Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  280 FVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             EEeccccccccCceeeecccccceeeec
Confidence            677888887 668999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-29  Score=217.26  Aligned_cols=306  Identities=14%  Similarity=0.227  Sum_probs=235.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .+|.++|..++|+|++.++++|+ |-.|++|+....+..  .++. ||-+-|..+.|++.-..++.++    .|.+|+||
T Consensus        48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl--ftL~-GHlDYVRt~~FHheyPWIlSAS----DDQTIrIW  120 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL--FTLL-GHLDYVRTVFFHHEYPWILSAS----DDQTIRIW  120 (1202)
T ss_pred             hccCCccceeeecCCCCeEEecCCccEEEEEecccceeh--hhhc-cccceeEEeeccCCCceEEEcc----CCCeEEEE
Confidence            47999999999999999999999 899999999975554  4454 9999999999988777777777    79999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce-----------------------------eee
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK-----------------------------LVD  128 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~-----------------------------~~~  128 (359)
                      +..+++++..+. |..-|.|.+|+|....++   .|.+|++||+...+                             ..+
T Consensus       121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH  200 (1202)
T ss_pred             eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence            999999999999 999999999999776666   89999999984211                             123


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee---eEEeecccccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK---SKYITAHASRIASIAMTLDGRFVATASSKGTLIRV  205 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~i  205 (359)
                      .+++|...++.++|+|.-.  +++ +|+.|..|++|..+...   +.+..+|.+.|.++-|+|...++++.++|++ |+|
T Consensus       201 VLEGHDRGVNwaAfhpTlp--liV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-irV  276 (1202)
T KOG0292|consen  201 VLEGHDRGVNWAAFHPTLP--LIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-IRV  276 (1202)
T ss_pred             eecccccccceEEecCCcc--eEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-EEE
Confidence            4577888888889888654  345 48899999999887643   4556899999999999999999999999999 999


Q ss_pred             EEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeE
Q 018248          206 FNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRF  285 (359)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (359)
                      ||+...+.+++++.  .....+.++-+|..+++++|- |+-+.||.++...+..                 ......+-|
T Consensus       277 wDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~-----------------~v~~n~LfY  336 (1202)
T KOG0292|consen  277 WDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAY-----------------AVNGNGLFY  336 (1202)
T ss_pred             Eecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceE-----------------EEcCCEEEE
Confidence            99999999999987  456889999999999888665 5558899998655321                 112222333


Q ss_pred             eeeecceEEecc----cceeEEeecC---CcEEEeeecccCCEEEEEec--CCeEEEEEeCCC
Q 018248          286 IRGVLPKYFSSK----WSMAQFRLPE---NVQYLVGFGRQNNTIVIVGL--DGSYYKCEFDPM  339 (359)
Q Consensus       286 ~~~~~~~~~~~~----~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--dg~i~v~~~~~~  339 (359)
                      ++....+.++-.    -.++.++.+.   .+..++.++|..+.++.++.  .|..-++.++.+
T Consensus       337 vkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~  399 (1202)
T KOG0292|consen  337 VKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD  399 (1202)
T ss_pred             EccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence            332222221111    1233344443   56788999997666655543  566667777655

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=1e-30  Score=203.41  Aligned_cols=237  Identities=14%  Similarity=0.189  Sum_probs=209.3

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD  123 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~  123 (359)
                      ||.+-|.++++.|....++..+    .|++++|||+.+|++..++. |-..|..+++++-..+++   .|+.|+.||++.
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs----~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGS----ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hccceEEEEeeCCCceeEEecC----CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            9999999999998877776666    78999999999999999999 999999999999988887   899999999999


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCe
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTL  202 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~  202 (359)
                      .+.++.+.+|-..+.++++.|.-+.  +++ |+.|..+++|+.+. ..+..+.+|..+|.++.+.|-...+++|+.|++ 
T Consensus       225 nkvIR~YhGHlS~V~~L~lhPTldv--l~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-  300 (460)
T KOG0285|consen  225 NKVIRHYHGHLSGVYCLDLHPTLDV--LVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-  300 (460)
T ss_pred             hhhHHHhccccceeEEEecccccee--EEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-
Confidence            9999999999999999999987764  555 77899999988876 567889999999999999998888999999999 


Q ss_pred             EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                      |++||++.|+....+..  |...+.+++.+|....+|+++.|. |+-|++..+.-..                       
T Consensus       301 vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~-----------------------  354 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQ-----------------------  354 (460)
T ss_pred             EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhh-----------------------
Confidence            99999999999888876  788999999999999999999886 9999998876221                       


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                         .+..+...+++++...| ..+++|+++|.+..|++..
T Consensus       355 -------------------nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  355 -------------------NLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             -------------------ccccccceeeeeeeccC-ceEEEcCCceEEEEEecCc
Confidence                               13345667888888777 7889999999999999876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=1.7e-30  Score=211.23  Aligned_cols=285  Identities=15%  Similarity=0.206  Sum_probs=213.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce--eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI--MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      +.|...|.++++.|.|.+|++|+ |..|++||+......  ..+.+.+...+.+..+.+++.++.++++++.    ...+
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqak  239 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS----AQAK  239 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC----ccee
Confidence            35678899999999999999999 999999999854322  2233434557789999999999999888854    6788


Q ss_pred             EEECCCccEEeee-------------c-cCcceeEEEEeccee--EEE--ecCeEEEEEcccc-eeeeeEec-----cCC
Q 018248           80 IWDDHENRYLGEL-------------S-FRSEVKNVRLRRDRI--VVV--LNQKVYVYNFTDL-KLVDQIET-----VVN  135 (359)
Q Consensus        80 iwd~~~~~~~~~~-------------~-~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~-~~~~~~~~-----~~~  135 (359)
                      ++| +.|..+.++             + |...+++.+|+|..+  ++.  .||++++||+... +.+..++.     ..-
T Consensus       240 l~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  240 LLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            998 444332222             2 667889999999754  333  9999999999553 33333332     334


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCee----eEEeecccc--cccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----SKYITAHAS--RIASIAMTLDGRFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~----~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~  209 (359)
                      ++..++|+++++.  +|+ |..||.|.+|+.....    ...-.+|..  .|+|++||+||++|++-+.|++ +++||++
T Consensus       319 ~~tsC~~nrdg~~--iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLr  394 (641)
T KOG0772|consen  319 PVTSCAWNRDGKL--IAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLR  394 (641)
T ss_pred             CceeeecCCCcch--hhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecc
Confidence            5678899999876  665 7789999999976532    233467877  8999999999999999999999 9999998


Q ss_pred             CCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcC------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          210 DGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSD------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       210 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                      +.+ ++....+-...-+-+.++|||+.++|++|+.      .|++.+||..+-...                        
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v------------------------  450 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV------------------------  450 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE------------------------
Confidence            754 4544443323346678999999999999863      467888887764411                        


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                        ..+..+...|..+.|+|.=++|.+|+.||.++|| +++.
T Consensus       451 ------------------~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp~  488 (641)
T KOG0772|consen  451 ------------------YKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDPN  488 (641)
T ss_pred             ------------------EEecCCCceEEEEeecchhhheeeecCCCceEEE-ECcc
Confidence                              1122334678889999999999999999999999 5543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=5.8e-30  Score=200.47  Aligned_cols=278  Identities=14%  Similarity=0.162  Sum_probs=214.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|++.|.++...  ++.+++|+ ||.+++|+... +..  ..+. ||.+++..+++.... ....+++++  .|.++++|
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~--~~~~-Ght~~ik~v~~v~~n~~~~~fvsas--~Dqtl~Lw  174 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSI--KTIV-GHTGPIKSVAWVIKNSSSCLFVSAS--MDQTLRLW  174 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceE--EEEe-cCCcceeeeEEEecCCccceEEEec--CCceEEEE
Confidence            478888888877  78999999 99999999884 333  2333 899999977766433 322333333  78999999


Q ss_pred             ECCCccEEeee-----ccCcceeEEEEecceeEEE---ecCeEEEEEccc-------------------------ceeee
Q 018248           82 DDHENRYLGEL-----SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-------------------------LKLVD  128 (359)
Q Consensus        82 d~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-------------------------~~~~~  128 (359)
                      .++.++.....     .|...|.+++..+++..++   .|..|++|+..+                         +.++.
T Consensus       175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            98877543322     3899999999999998888   899999999311                         12566


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      .+.+|..+|..+.|++..    .+++++.|.+|+.|+........-......++++..+|..++|++|+.|.. |++||.
T Consensus       255 tl~GHt~~Vs~V~w~d~~----v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~-irl~DP  329 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSDAT----VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH-IRLWDP  329 (423)
T ss_pred             EecccccceeeEEEcCCC----ceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc-eeecCC
Confidence            778899999999998833    444578999999998876544444445678999999999999999999999 999999


Q ss_pred             CCCc---EEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          209 MDGS---LLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       209 ~~~~---~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                      +++.   ...++.+  |.+.|.++.|+|.. .+|++++.|+++++||+++....                          
T Consensus       330 R~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p--------------------------  381 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP--------------------------  381 (423)
T ss_pred             CCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc--------------------------
Confidence            8764   3445655  78899999999965 46889999999999999987621                          


Q ss_pred             EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                     +-.+..|.+.|.++.|.. +..|++||.|.+|+|++-.+
T Consensus       382 ---------------lydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  382 ---------------LYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             ---------------ceeeccCCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence                           111334567888899874 57999999999999997554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.2e-30  Score=189.65  Aligned_cols=238  Identities=16%  Similarity=0.216  Sum_probs=202.1

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD  123 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~  123 (359)
                      +|.++|..+.+.-++++.+.++    .|.+|++|++..+.+++++. |..+|.+++.+.|+..++   .|..+.+||+.+
T Consensus        15 ~~qgaV~avryN~dGnY~ltcG----sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCG----SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcC----CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            6789999999999999999888    78999999999999999999 999999999999887777   899999999999


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC---eeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---KKSKYITAHASRIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  200 (359)
                      |+.++.+.+|...++.+.|+.+..  ++++ |+.|..+++|+-+.   ++++.+......|.++..+  +..|++|+.||
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesS--Vv~S-gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG  165 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESS--VVAS-GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG  165 (307)
T ss_pred             CeeeeecccccceeeEEEecCcce--EEEe-ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence            999999999999999998876654  3555 88999999998765   6677777778889998874  56899999999


Q ss_pred             CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248          201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI  280 (359)
Q Consensus       201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (359)
                      + ++.||++.|+....+.+    .+|++++|++|++..+.++.|+++++.|-++++-..                     
T Consensus       166 t-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~---------------------  219 (307)
T KOG0316|consen  166 T-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK---------------------  219 (307)
T ss_pred             c-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHH---------------------
Confidence            9 99999999998877764    489999999999999999999999999999987221                     


Q ss_pred             eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                  ....+.       ....-..++++.....+++|++||.|++|++..+
T Consensus       220 ------------sYkGhk-------n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  220 ------------SYKGHK-------NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             ------------Hhcccc-------cceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence                        111110       0122345778887789999999999999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-30  Score=215.07  Aligned_cols=239  Identities=13%  Similarity=0.135  Sum_probs=211.4

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD  123 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~  123 (359)
                      .|+..|.++.++|....++..-    .+|.|.|||.++...+..+. .+.+|++..|-+..++++   .|..|++|+..+
T Consensus        11 ~rSdRVKsVd~HPtePw~la~L----ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAAL----YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             ccCCceeeeecCCCCceEEEee----ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            4789999999999988877766    67999999999999999999 788999999998888777   899999999999


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc-CCcEEEEEeCCC
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL-DGRFVATASSKG  200 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg  200 (359)
                      ++.++.++.|..-+.+++.+|....  +.+ ++.|-.|++|+.+.  .+.+++.+|...|.+++|+| |.+.+|+++-|+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~--vLt-sSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPY--VLT-SSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCe--EEe-cCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence            9999999999999999999998764  555 67899999977766  67889999999999999999 566899999999


Q ss_pred             CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC--CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248          201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA--QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS  278 (359)
Q Consensus       201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
                      + |++|.+.+..+..++++  |...|+++.+-+-|  .+|++|++|.+|+|||.++..+..                   
T Consensus       164 T-VKVWslgs~~~nfTl~g--HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~-------------------  221 (794)
T KOG0276|consen  164 T-VKVWSLGSPHPNFTLEG--HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ-------------------  221 (794)
T ss_pred             c-EEEEEcCCCCCceeeec--cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-------------------
Confidence            9 99999999999999987  88899999998744  699999999999999999976431                   


Q ss_pred             ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                             ++..|...|..+.|+|.=..+++|++||+++||+-.+
T Consensus       222 -----------------------TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  222 -----------------------TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             -----------------------HhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence                                   2455677889999999999999999999999997543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.8e-31  Score=204.55  Aligned_cols=279  Identities=12%  Similarity=0.129  Sum_probs=223.2

Q ss_pred             CCCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            3 QPDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      ..|.+.|.|++=+|.. ..+++|+ ||.|+|||+..-+..  ..+. +|.+.|..+++..  +.++.++    .|.+|+.
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~--~~~~tvg----dDKtvK~  133 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQ--TSFFTVG----DDKTVKQ  133 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEecc--cceEEec----CCcceee
Confidence            4689999999999987 7889999 999999999865444  5555 8999999998876  5566666    6899999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      |.+.. .++.++-....+..+.-+..+..++ ....|.|||.+...++..+......+.++.++|.... +|++ +..|+
T Consensus       134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas-~~sDr  210 (433)
T KOG0268|consen  134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILAS-CASDR  210 (433)
T ss_pred             eeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcch-heee-eccCC
Confidence            99654 4677776777788888877777777 6778999999888899999888888899999998775 4555 44688


Q ss_pred             eEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc-EEEEeecCCCCcceEEEEecCCCCE
Q 018248          160 QVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       160 ~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      .|.+++.+. .+++.+. -...-+.++|+|.+-.+++|++|.. ++.||++..+ ++..+..  |.+.|.+++|||.|+-
T Consensus       211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQE  286 (433)
T ss_pred             ceEEEecccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCCcch
Confidence            999966554 4544433 3455688999998888899999999 9999998754 5555555  7789999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248          238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR  317 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  317 (359)
                      +++|+.|.+|+||.++.+....                            .+..+             .-..|.++.||-
T Consensus       287 fvsgsyDksIRIf~~~~~~SRd----------------------------iYhtk-------------RMq~V~~Vk~S~  325 (433)
T KOG0268|consen  287 FVSGSYDKSIRIFPVNHGHSRD----------------------------IYHTK-------------RMQHVFCVKYSM  325 (433)
T ss_pred             hccccccceEEEeecCCCcchh----------------------------hhhHh-------------hhheeeEEEEec
Confidence            9999999999999999876321                            00000             013578999999


Q ss_pred             cCCEEEEEecCCeEEEEEeCC
Q 018248          318 QNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       318 ~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      |.+++++|++||.|++|+-..
T Consensus       326 Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  326 DSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             cccEEEecCCCcceeeeecch
Confidence            999999999999999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=205.65  Aligned_cols=278  Identities=13%  Similarity=0.191  Sum_probs=223.9

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...+..+.|-++...|++|+ |..|++|+....+.....++. |-.+++..+.+..++..++..+    .|+.+++|
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas----~d~~~r~W  246 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAAS----NDKNLRLW  246 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeec----CCCceeee
Confidence            46889999999999999999999 999999999877655556665 6667899898888777777666    78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      ++...+...++. |.+.|+++.|......++   .|.+|++||+....+.+++-... .+..++.++    ..++ +|..
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~~----~~~~-SgH~  320 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCSI----SDVI-SGHF  320 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cccceEecc----eeee-eccc
Confidence            999999999998 999999999987766444   89999999998887777654322 233334331    2244 4889


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC--CCcceEEEEecCC
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA--ERAEIYSLAFSSN  234 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~  234 (359)
                      |++|++|+.+. .+......+ +.|+++..+++|..|.+++.|.. +.+.|+++.+....+....  .....+.+.|||+
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             ccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEECCC
Confidence            99999999554 555566555 49999999999999999999999 9999999999888776421  2235889999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC--CcEEE
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE--NVQYL  312 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~  312 (359)
                      +.|+++|+.||.|+||++.+++...                                 .         +..+.  ..|++
T Consensus       399 ~~YvaAGS~dgsv~iW~v~tgKlE~---------------------------------~---------l~~s~s~~aI~s  436 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVFTGKLEK---------------------------------V---------LSLSTSNAAITS  436 (459)
T ss_pred             CceeeeccCCCcEEEEEccCceEEE---------------------------------E---------eccCCCCcceEE
Confidence            9999999999999999999987321                                 0         11112  25899


Q ss_pred             eeecccCCEEEEEecCCeEEEEE
Q 018248          313 VGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       313 ~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      ++|+|.|..|++++.++.+.+|.
T Consensus       437 ~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  437 LSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999999983

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.5e-28  Score=203.42  Aligned_cols=235  Identities=19%  Similarity=0.308  Sum_probs=200.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...+..+.|+|++++|++++ ++.|++|++..++...  .+. +|...+..+.+.+++..++..+    .++.+.+||
T Consensus        49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~  121 (289)
T cd00200          49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR--TLT-GHTSYVSSVAFSPDGRILSSSS----RDKTIKVWD  121 (289)
T ss_pred             cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE--EEe-ccCCcEEEEEEcCCCCEEEEec----CCCeEEEEE
Confidence            5778889999999999999999 9999999999765443  333 5777899999888755555444    479999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE--e-cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV--L-NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +.+++....+. |...+.++.|+|++.+++  . ++.|++||+++++.+..+..+...+..+.++++++.  +++ ++.+
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~-~~~~  198 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK--LLS-SSSD  198 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCE--EEE-ecCC
Confidence            99888888887 888999999999887777  4 999999999988888888888888899999998865  444 3349


Q ss_pred             eeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          159 GQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       159 ~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      +.+++|+... ..+..+..|...+.+++|+|++.++++++.++. |++||+.+++.+..+..  |...|.+++|+|++++
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~  275 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGKR  275 (289)
T ss_pred             CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECCCCCE
Confidence            9999988874 566666688889999999999989988888999 99999999998888875  6779999999999999


Q ss_pred             EEEEcCCCcEEEEE
Q 018248          238 LAASSDKGTVHVFG  251 (359)
Q Consensus       238 l~~~~~dg~i~iw~  251 (359)
                      |++++.||.+++|+
T Consensus       276 l~~~~~d~~i~iw~  289 (289)
T cd00200         276 LASGSADGTIRIWD  289 (289)
T ss_pred             EEEecCCCeEEecC
Confidence            99999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.4e-29  Score=201.07  Aligned_cols=275  Identities=15%  Similarity=0.198  Sum_probs=218.5

Q ss_pred             CCCceEEEEEccCCC-EEEEecCCceEEEEcCCCccee-eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            5 DPITIHHLALNQDHG-CFATGTETGFRVYLSDPYKPIM-RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         5 h~~~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ..+.|.+++|||... -+|+.+.-.+.||+..+..... ...|    ...+..++|..++..++...    ..|.|+++|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF----k~~v~s~~fR~DG~LlaaGD----~sG~V~vfD   96 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF----KDVVYSVDFRSDGRLLAAGD----ESGHVKVFD   96 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh----ccceeEEEeecCCeEEEccC----CcCcEEEec
Confidence            457899999999654 4677778889999987644332 2334    57788888887777666554    569999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .++...++.+. |..++..+.|+|++..++    .|+.+++||+.+......+.+|...+.+.+++|..+.  ++.+|+.
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h--ivvtGsY  174 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH--IVVTGSY  174 (487)
T ss_pred             cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe--EEEecCC
Confidence            87777778887 999999999999876555    7889999999888876688999999999999998876  4445999


Q ss_pred             CeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      ||.|++|+.+.. ....--.|..+|..+.+-|.|..+++++...  |++||+-+|..+...... |...|+|+.+..++.
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDST  251 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhhc-ccceEEEEEeecCCc
Confidence            999999998875 3333346899999999999999999988664  999999866544333322 678999999999999


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                      .|++++-|+.|++||+.+-+..                            .              .++.| ++|.+++.+
T Consensus       252 rLlS~sLD~~VKVfd~t~~Kvv----------------------------~--------------s~~~~-~pvLsiavs  288 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDTTNYKVV----------------------------H--------------SWKYP-GPVLSIAVS  288 (487)
T ss_pred             eEeecccccceEEEEccceEEE----------------------------E--------------eeecc-cceeeEEec
Confidence            9999999999999997764411                            0              12222 588999999


Q ss_pred             ccCCEEEEEecCCeEEEEE
Q 018248          317 RQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       317 ~~~~~l~~~~~dg~i~v~~  335 (359)
                      ||++.+++|-.||.+.+-+
T Consensus       289 ~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  289 PDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             CCCceEEEecccceeeeeh
Confidence            9999999999999887663

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=8.1e-29  Score=218.16  Aligned_cols=289  Identities=17%  Similarity=0.218  Sum_probs=230.0

Q ss_pred             CCCceEEEEEccCCCEEEEec---CCceEEEEcCCCc----------ceeeeecccCCCCceeEEEEeccCCEEEEEecC
Q 018248            5 DPITIHHLALNQDHGCFATGT---ETGFRVYLSDPYK----------PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG   71 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~   71 (359)
                      +...|.+++.+|||..+|+|+   |+.++||+.++--          ........ .|.+.+.|+.|++++.+++..+  
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGS--   88 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGS--   88 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeecc--
Confidence            456799999999999999998   8889999976321          11111222 6899999999999999999888  


Q ss_pred             CCCCCeEEEEECCC----------c--------cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee
Q 018248           72 PHQSNKVMIWDDHE----------N--------RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ  129 (359)
Q Consensus        72 ~~~d~~i~iwd~~~----------~--------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~  129 (359)
                        .|+.|.||+...          |        +.+..+. |+..|.+++|+|++.+++   .|++|.+||..+.+.+..
T Consensus        89 --DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   89 --DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             --CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence              789999999662          0        2455566 999999999999999999   899999999999999999


Q ss_pred             EeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeeccc------ccccEEEEccCCcEEEEEeC----
Q 018248          130 IETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHA------SRIASIAMTLDGRFVATASS----  198 (359)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~----  198 (359)
                      +.+|...|.-+.|.|-+++  +|+ -+.|++|++|.... ...+.+..+.      .....+.|||||++|++...    
T Consensus       167 l~~H~s~VKGvs~DP~Gky--~AS-qsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  167 LRGHQSLVKGVSWDPIGKY--FAS-QSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             eecccccccceEECCccCe--eee-ecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence            9999999999999998876  777 56799999998443 4555554442      35678999999999998742    


Q ss_pred             CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-----CC------------EEEEEcCCCcEEEEEccCCCCCCCC
Q 018248          199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-----AQ------------WLAASSDKGTVHVFGLKVDSGSPGT  261 (359)
Q Consensus       199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iw~~~~~~~~~~~  261 (359)
                      -.. +.|.+-.+.+.-..+.+  |.+++.++.|+|.     .+            .+|+|+.|++|-||.....++.-  
T Consensus       244 ~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~--  318 (942)
T KOG0973|consen  244 KST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF--  318 (942)
T ss_pred             cce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh--
Confidence            234 88888877777778877  7789999999982     11            67899999999999997766431  


Q ss_pred             CccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248          262 SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                                                  .           ...+-...|..++|+|||-.|++++.||+|.++.++...=
T Consensus       319 ----------------------------v-----------i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  319 ----------------------------V-----------IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             ----------------------------h-----------hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence                                        0           0122335789999999999999999999999999987654


Q ss_pred             CceE
Q 018248          342 GEMH  345 (359)
Q Consensus       342 ~~~~  345 (359)
                      |+..
T Consensus       360 G~~l  363 (942)
T KOG0973|consen  360 GVAL  363 (942)
T ss_pred             Cccc
Confidence            5443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.7e-30  Score=197.56  Aligned_cols=280  Identities=12%  Similarity=0.176  Sum_probs=227.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecc-----cCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFD-----RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .++.+.|..|||||++|++|+ ||-|.+|+..+++......++     --|..+|.+++|+-+...++..+    .||+|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs----qDGkI  287 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS----QDGKI  287 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC----cCCcE
Confidence            356688999999999999999 999999999887654222111     03577888888887777766655    79999


Q ss_pred             EEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           79 MIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      ++|.+.+|++++.+.  |...|+++.|+.|+..+.   .|.++++.-+++|++++.+.+|..-++-..|.+++..  +++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~--iis  365 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH--IIS  365 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe--EEE
Confidence            999999999999997  999999999999987766   8999999999999999999999999999999999987  443


Q ss_pred             cCCCCeeEEEEecCC-eeeEEeec--ccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-CCcceEE
Q 018248          154 PGLLKGQVRVEDYGT-KKSKYITA--HASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-ERAEIYS  228 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~-~~~~~~~~--~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-~~~~i~~  228 (359)
                       ++.||+|++|.... .++.+++.  ...+|+++-.-|. ...++++....+ |+|.++ .|+.++.+..+. ..+...+
T Consensus       366 -aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREgGdFi~  442 (508)
T KOG0275|consen  366 -ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREGGDFIN  442 (508)
T ss_pred             -ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccCCceEE
Confidence             44799999988754 55666543  4557888877774 457888888888 999997 688888887543 2346678


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248          229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN  308 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      ...||.|.++.+.++|+.++.|.+.+++-.                                 +         ++..++.
T Consensus       443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE---------------------------------~---------tl~VhEk  480 (508)
T KOG0275|consen  443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLE---------------------------------R---------TLPVHEK  480 (508)
T ss_pred             EEecCCCcEEEEEccCcEEEEEEeecCcee---------------------------------e---------eeecccc
Confidence            889999999999999999999999998722                                 1         1333455


Q ss_pred             cEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          309 VQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      .+..++-+|..+.|++-++||.+++|.
T Consensus       481 dvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  481 DVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccCcccchhhhhcccchhhhcC
Confidence            567788899999999999999999994

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=209.28  Aligned_cols=236  Identities=11%  Similarity=0.184  Sum_probs=197.2

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|..+|..++|+++|..|.+++ |+.+++||+++++.......    ...+.++.+.|++..++++++   .|+.|+.|
T Consensus       255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~---sd~ki~~w  327 (503)
T KOG0282|consen  255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGG---SDKKIRQW  327 (503)
T ss_pred             hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec----CCCceeeecCCCCCcEEEEec---CCCcEEEE
Confidence            46899999999999999999999 99999999999988866554    567788999999967777766   58999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      |+++++.++++. |-+.|..+.|-+++..++   .|+.++||+.+.+-.++.+. .......++..+|+++.  +++ -+
T Consensus       328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~--~~a-Qs  404 (503)
T KOG0282|consen  328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW--FAA-QS  404 (503)
T ss_pred             eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe--ehh-hc
Confidence            999999999998 889999999999998777   89999999998776655442 23344567788888764  555 56


Q ss_pred             CCeeEEEEecCC----eeeEEeeccc--ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          157 LKGQVRVEDYGT----KKSKYITAHA--SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       157 ~d~~v~~~~~~~----~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                      .|+.+.++....    ...+.+.+|.  +.-..+.|||||.+|++|+.||. +.+||.++.+.+..++.  |...+..+.
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~ci~v~  481 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQPCIGVD  481 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcceEEEE
Confidence            788888865432    3445567774  45677899999999999999999 99999999999999987  778999999


Q ss_pred             ecCCC-CEEEEEcCCCcEEEEE
Q 018248          231 FSSNA-QWLAASSDKGTVHVFG  251 (359)
Q Consensus       231 ~s~~~-~~l~~~~~dg~i~iw~  251 (359)
                      |+|.. ..+|+++.||.|++|+
T Consensus       482 wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCcceeEecccCceeEecC
Confidence            99954 5799999999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-28  Score=204.61  Aligned_cols=277  Identities=13%  Similarity=0.103  Sum_probs=227.7

Q ss_pred             EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      -+.|+ ....||+|....|++|+..++.......+   +...+..+.|++++..+++..    .+|.|.|||..+.+.+.
T Consensus       182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~----~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGT----SDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEee----cCCeEEEEehhhccccc
Confidence            35677 55688888888999999998876655565   278999999999999999888    78999999999988888


Q ss_pred             eec--cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeee-EeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec
Q 018248           91 ELS--FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQ-IETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY  166 (359)
Q Consensus        91 ~~~--~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~  166 (359)
                      .+.  |...|-+++|+....... .++.|..+|++..+.... +..|...|..+.|++++..  +|+ |+.|+.+.||+.
T Consensus       254 ~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lAS-GgnDN~~~Iwd~  330 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LAS-GGNDNVVFIWDG  330 (484)
T ss_pred             cccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--ecc-CCCccceEeccC
Confidence            887  689999999994433333 999999999987765554 7788888888999998876  887 778999999887


Q ss_pred             -CCeeeEEeecccccccEEEEcc-CCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE-
Q 018248          167 -GTKKSKYITAHASRIASIAMTL-DGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS-  241 (359)
Q Consensus       167 -~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-  241 (359)
                       ...+...+..|...|..++|+| ...+||+|+  .|+. |++||..+++.+..+..   .+.|.++.|++..+-|+++ 
T Consensus       331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence             4477888999999999999999 455888875  6888 99999999999998874   4689999999988766654 


Q ss_pred             -cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCC
Q 018248          242 -SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN  320 (359)
Q Consensus       242 -~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  320 (359)
                       ..++.|.||+..+....                                          +.+..|...|..++++|||.
T Consensus       407 G~s~n~i~lw~~ps~~~~------------------------------------------~~l~gH~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  407 GYSENQITLWKYPSMKLV------------------------------------------AELLGHTSRVLYLALSPDGE  444 (484)
T ss_pred             CCCCCcEEEEecccccee------------------------------------------eeecCCcceeEEEEECCCCC
Confidence             35678999999885522                                          12445677889999999999


Q ss_pred             EEEEEecCCeEEEEEeCCCCCCce
Q 018248          321 TIVIVGLDGSYYKCEFDPMKGGEM  344 (359)
Q Consensus       321 ~l~~~~~dg~i~v~~~~~~~~~~~  344 (359)
                      .|++|+.|.++++|++-.....++
T Consensus       445 ~i~t~a~DETlrfw~~f~~~~~~~  468 (484)
T KOG0305|consen  445 TIVTGAADETLRFWNLFDERPKST  468 (484)
T ss_pred             EEEEecccCcEEeccccCCCCccc
Confidence            999999999999999977543333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=6.4e-28  Score=224.77  Aligned_cols=235  Identities=10%  Similarity=0.182  Sum_probs=191.5

Q ss_pred             CCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEec-cCCEEEEEecCCCCCCeEEEEE
Q 018248            6 PITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF-RSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         6 ~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ...|.+++|+| ++.+|++++ |+.|++||+.+++..  ..+. +|...|..++|++ +++.++.++    .|+.|++||
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--~~~~-~H~~~V~~l~~~p~~~~~L~Sgs----~Dg~v~iWd  604 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMK-EHEKRVWSIDYSSADPTLLASGS----DDGSVKLWS  604 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--EEec-CCCCCEEEEEEcCCCCCEEEEEc----CCCEEEEEE
Confidence            46789999987 478899999 999999999876544  4444 8999999999986 556666666    689999999


Q ss_pred             CCCccEEeeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccce-eeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLK-LVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +.+++.+..+.+...+.++.|++ ++..++   .|+.|++||+++.+ .+..+..|...+..+.|. ++.  .+++ ++.
T Consensus       605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs-~s~  680 (793)
T PLN00181        605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVS-SST  680 (793)
T ss_pred             CCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEE-EEC
Confidence            99999988888667899999964 577666   89999999997765 466777888888888886 343  3555 567


Q ss_pred             CeeEEEEecCC-------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec-----------
Q 018248          158 KGQVRVEDYGT-------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR-----------  219 (359)
Q Consensus       158 d~~v~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~-----------  219 (359)
                      |+.|++|+...       ..+..+.+|...+.+++|+|++.+|++|+.|+. |++|+......+..+..           
T Consensus       681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~~  759 (793)
T PLN00181        681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLEV  759 (793)
T ss_pred             CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCccccccc
Confidence            99999998762       467788899999999999999999999999999 99999876654433211           


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      ..+...|.+++|+|++..|++|+.||.|+||++
T Consensus       760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            123457999999999999999999999999986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=3.1e-28  Score=211.07  Aligned_cols=272  Identities=17%  Similarity=0.227  Sum_probs=223.5

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      +...+.+..|.  ..++++++ ++.|++|+..++.... ..+. ||.+.|..+++...++.++.++    .|.++++||.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS----~D~t~rvWd~  278 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGS----TDKTERVWDC  278 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEe----cCCcEEeEec
Confidence            56778888888  55778888 9999999999765553 3355 9999999999987566666666    6899999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      .+|++...+. |...|.++...+.-..-. .|.+|++|++.+++.+..+.+|..+|.++.+.  ++  ++++ |+.|+.|
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lvs-gs~d~~v  353 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLVS-GSYDGTV  353 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEEE-EecCceE
Confidence            9999999999 999999998876554444 89999999999999999999899999888876  33  3554 7889999


Q ss_pred             EEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          162 RVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       162 ~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      ++|+.. +++++.+.+|...|.++.+.+. ..+++|+.|+. |++||+++. +++..+..  |..-+.++.+  .+++|+
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~Lv  427 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFLV  427 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccceeE
Confidence            998875 5888999999999999988665 88999999999 999999999 89999987  6667766655  678999


Q ss_pred             EEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee-cCCcEEEeeeccc
Q 018248          240 ASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL-PENVQYLVGFGRQ  318 (359)
Q Consensus       240 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~  318 (359)
                      +++.|++|++||.++++...                                 .         +.. +.+.+..+++.  
T Consensus       428 s~~aD~~Ik~WD~~~~~~~~---------------------------------~---------~~~~~~~~v~~l~~~--  463 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEEGECLR---------------------------------T---------LEGRHVGGVSALALG--  463 (537)
T ss_pred             eccccccEEEeecccCceee---------------------------------e---------eccCCcccEEEeecC--
Confidence            99999999999999987431                                 0         111 23456666665  


Q ss_pred             CCEEEEEecCCeEEEEEeCCC
Q 018248          319 NNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       319 ~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      ...+++++.||.+++|+++..
T Consensus       464 ~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  464 KEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             cceEEEEecCCeeEEEecccC
Confidence            468999999999999998873

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.8e-28  Score=205.01  Aligned_cols=240  Identities=12%  Similarity=0.118  Sum_probs=202.0

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ...|+++.|+++|.+||+|. +|.|.|||....+..  ..+..+|...|.+++|.  ...+...+    .++.|..+|+.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGs----r~~~I~~~dvR  288 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGS----RDGKILNHDVR  288 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEec----CCCcEEEEEEe
Confidence            68899999999999999999 999999999876555  44441388888888875  33333333    68999999998


Q ss_pred             CccEEee-ec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           85 ENRYLGE-LS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        85 ~~~~~~~-~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      ..+.... +. |..+|..+.|++++.+++   .|+.+.|||....++...+..|...|..++|+|...+++....|+.|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            8776655 55 999999999999999999   899999999988889999999999999999999988866555677899


Q ss_pred             eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEE--eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          160 QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA--SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       160 ~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      .|++|+...........-...|.++.|++..+.|+++  ..++. |.||+..+.+.+..+.+  |...|..+++||||..
T Consensus       369 ~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPDGET  445 (484)
T ss_pred             EEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCCCCE
Confidence            9999888765444444457899999999998766664  34666 99999999999999987  7789999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCC
Q 018248          238 LAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~  256 (359)
                      +++|+.|.++++|++-...
T Consensus       446 i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  446 IVTGAADETLRFWNLFDER  464 (484)
T ss_pred             EEEecccCcEEeccccCCC
Confidence            9999999999999997753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=8.5e-28  Score=192.86  Aligned_cols=286  Identities=14%  Similarity=0.128  Sum_probs=225.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce---eee-----------ecc-cCCCCceeEEEEeccCCEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI---MRR-----------DFD-RNPRGGTQLVSMLFRSNIICL   67 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~---~~~-----------~~~-~~h~~~v~~~~~~~~~~~~~~   67 (359)
                      .|.-+|.+|+++||+++..+++ +++|.-|++.++...   ...           ... .+|...+.++++++++.++++
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            6889999999999999999999 999999998776532   111           111 178888999999999999988


Q ss_pred             EecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecce--eEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeee
Q 018248           68 VNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDR--IVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVS  143 (359)
Q Consensus        68 ~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (359)
                      .+    .|..|.||+..+.+.++.++ |.+.|.+++|-...  .+.+ .|..|++|++.....+.++.+|...+..+...
T Consensus       220 gg----~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  220 GG----RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             cC----CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            77    78999999999999999988 99999999997643  3334 99999999999888888998888876655443


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC--
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA--  221 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--  221 (359)
                        .... +++.|..|+++++|.........+.++.+.+.|++|-.+ ..+++|+.+|. |.+|++...+++......+  
T Consensus       296 --~reR-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  296 --SRER-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             --cccc-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEeeccccc
Confidence              3333 444587899999999987777788999999999999654 56789999999 9999999998887765321  


Q ss_pred             --------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248          222 --------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY  293 (359)
Q Consensus       222 --------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (359)
                              ++..|++++..|...++++|+.+|.|++|.+..+-..                        +.+        
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~------------------------i~~--------  418 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA------------------------INL--------  418 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc------------------------cce--------
Confidence                    1227899999999999999999999999999987421                        000        


Q ss_pred             EecccceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeC
Q 018248          294 FSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFD  337 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~  337 (359)
                            +..+. -.+.|+.++|+++|+.|++|.. +..+--|-..
T Consensus       419 ------l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  419 ------LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             ------eeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence                  01111 1368999999999997666654 5555555543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=2.9e-28  Score=204.79  Aligned_cols=274  Identities=15%  Similarity=0.237  Sum_probs=223.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeE-EEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQL-VSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|+..|..+++.+.. .+++++ |+++++|+-...+......+. +|.+-+.. +++....+...++++   .|..|.+|
T Consensus        12 gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~---~D~~i~v~   86 (745)
T KOG0301|consen   12 GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGG---MDTTIIVF   86 (745)
T ss_pred             cCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeec---ccceEEEE
Confidence            588888888877655 677777 999999998765555444554 56666665 666654555444443   78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      ...+..++..++ |+..|.+++...++.++.  .|.++++|-+  +++...+++|...|+.++.-|.+.   +++ |+.|
T Consensus        87 ~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~---~vT-gsaD  160 (745)
T KOG0301|consen   87 KLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENT---YVT-GSAD  160 (745)
T ss_pred             ecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCc---EEe-ccCc
Confidence            999999999998 999999999988888666  9999999985  566667899999999888777662   444 7889


Q ss_pred             eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248          159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  238 (359)
                      .+|++|.- +..++++.+|...|+.+++-+++. +++++.||. |++|++ +|+.+.++.+  |...|++++..++++.+
T Consensus       161 KtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~~~~~~I  234 (745)
T KOG0301|consen  161 KTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMALSDGLI  234 (745)
T ss_pred             ceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEecCCCCeE
Confidence            99999987 788999999999999999988765 569999999 999998 8999999987  88999999988889999


Q ss_pred             EEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeeccc
Q 018248          239 AASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQ  318 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  318 (359)
                      +++++|++++||+...-.                                            ..+++|.-.++++.+-++
T Consensus       235 vs~gEDrtlriW~~~e~~--------------------------------------------q~I~lPttsiWsa~~L~N  270 (745)
T KOG0301|consen  235 VSTGEDRTLRIWKKDECV--------------------------------------------QVITLPTTSIWSAKVLLN  270 (745)
T ss_pred             EEecCCceEEEeecCceE--------------------------------------------EEEecCccceEEEEEeeC
Confidence            999999999999988322                                            125667778888888877


Q ss_pred             CCEEEEEecCCeEEEEEeCCC
Q 018248          319 NNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       319 ~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      |. |++|++||.||||..+..
T Consensus       271 gD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  271 GD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             CC-EEEeccCceEEEEEeccc
Confidence            54 677999999999998854

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.5e-27  Score=190.23  Aligned_cols=279  Identities=11%  Similarity=0.182  Sum_probs=225.3

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ...|.++...|....+++|+ |..+.++|....+..  ..+. ||...+..+.++++...++..+    .|..|++|...
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aS----ad~~i~vws~~  291 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITAS----ADEIIRVWSVP  291 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecC----CcceEEeeccc
Confidence            46788898888878899999 999999999876555  4555 9999999888888877777777    78999999987


Q ss_pred             CccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC--CceeeeeecCCCccEEEecCCCC
Q 018248           85 ENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN--PTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        85 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      ......... |+.+|+.+..+|.|.+++   .|++....|++++..+........  .+.+.+|+||+  +++++ |..|
T Consensus       292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgt-gt~d  368 (506)
T KOG0289|consen  292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGT-GTPD  368 (506)
T ss_pred             cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEec-cCCC
Confidence            776666666 999999999999999988   899999999999988877765333  35667777776  44665 8899


Q ss_pred             eeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          159 GQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       159 ~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      +.+++|+... ..+..|.+|.++|..++|+.+|-+|+++++|+. |++||++..+..+++... ...++.++.|.+.|++
T Consensus       369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTY  446 (506)
T ss_pred             ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCCe
Confidence            9999998875 456778999999999999999999999999999 999999998888888754 3347999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248          238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR  317 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  317 (359)
                      |+.++.|=+|++++-.+..                                     |..   ...+..+.+..+.+.|..
T Consensus       447 L~~~g~~l~Vy~~~k~~k~-------------------------------------W~~---~~~~~~~sg~st~v~Fg~  486 (506)
T KOG0289|consen  447 LGIAGSDLQVYICKKKTKS-------------------------------------WTE---IKELADHSGLSTGVRFGE  486 (506)
T ss_pred             EEeecceeEEEEEeccccc-------------------------------------cee---eehhhhcccccceeeecc
Confidence            9999777555555433332                                     111   111333446778899999


Q ss_pred             cCCEEEEEecCCeEEEEEe
Q 018248          318 QNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       318 ~~~~l~~~~~dg~i~v~~~  336 (359)
                      ..+++++++.|..++++.+
T Consensus       487 ~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  487 HAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cceEEeeccchhheEEeec
Confidence            9999999999999998865

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.4e-28  Score=186.90  Aligned_cols=285  Identities=11%  Similarity=0.138  Sum_probs=220.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCC------------C----cceeeeecccCCCCceeEEEEeccCCEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------------Y----KPIMRRDFDRNPRGGTQLVSMLFRSNIIC   66 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------------~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~   66 (359)
                      .|+.++.+.+|||||.++|+|+ |-.|+|.|++.            +    .....+++- .|..+|..+.|.|....++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheEE
Confidence            6899999999999999999999 99999999871            1    113334554 7899999999998877766


Q ss_pred             EEecCCCCCCeEEEEECCCccEEe---eeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE---eccCCCc
Q 018248           67 LVNSGPHQSNKVMIWDDHENRYLG---ELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI---ETVVNPT  137 (359)
Q Consensus        67 ~~~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~  137 (359)
                      ..+    .|++|+++|+......+   .++...+|.++.|+|.|.+++   ....+++||+.+-++...-   ..|...+
T Consensus       189 S~s----rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  189 SGS----RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             ecc----CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            655    79999999987654333   344567899999999999888   6679999999988875544   3466678


Q ss_pred             eeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEEe-eccc-ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          138 GLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKYI-TAHA-SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~~-~~~~-~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      ..+.+++.++.  .++ ++.||.|++|+- ..+++.++ .+|. ..|.+..|..+|+|+++.+.|.. +++|.+.+++++
T Consensus       265 ~~V~Ys~t~~l--YvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~l  340 (430)
T KOG0640|consen  265 TQVRYSSTGSL--YVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRML  340 (430)
T ss_pred             eEEEecCCccE--EEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCceE
Confidence            88888887763  444 789999999764 55677766 3454 47899999999999999999999 999999999999


Q ss_pred             EEeecCCCCc---ceEEEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248          215 QEMRRGAERA---EIYSLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL  290 (359)
Q Consensus       215 ~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (359)
                      .++.+....+   .-+...|+....+++.-.+ .+.+.-||-++.....                               
T Consensus       341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~-------------------------------  389 (430)
T KOG0640|consen  341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA-------------------------------  389 (430)
T ss_pred             EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh-------------------------------
Confidence            9988642111   2345567777777776553 4678999999876331                               


Q ss_pred             ceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          291 PKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                        .+.        -.|.+.+..+.-||.+..+++++.|-.++.|.-.+
T Consensus       390 --l~s--------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr~  427 (430)
T KOG0640|consen  390 --LLS--------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRRV  427 (430)
T ss_pred             --hcc--------cCCCCCceEEEeCCCCCceeeecccceeeeeeecc
Confidence              011        12567788888899999999999999999996543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.7e-26  Score=166.58  Aligned_cols=282  Identities=16%  Similarity=0.226  Sum_probs=217.5

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCC------C----c----ceeeeecccCCCCceeEEEEeccCCEEEEEe
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------Y----K----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVN   69 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~   69 (359)
                      ....|.+++|+|.|.+.|+|+ .++++|-....      .    +    ..+.+.  ..|.+.+.+++|++.+..++..+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~--khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN--KHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec--cccCccEEEEEecCccCeEEecC
Confidence            456799999999999999999 78887764321      1    1    111122  26889999999999999988877


Q ss_pred             cCCCCCCeEEEEECCCccE-----Eeeec-cCcceeEEEEecc----eeEEE----ecCeEEEEEcccceeeeeEeccCC
Q 018248           70 SGPHQSNKVMIWDDHENRY-----LGELS-FRSEVKNVRLRRD----RIVVV----LNQKVYVYNFTDLKLVDQIETVVN  135 (359)
Q Consensus        70 ~~~~~d~~i~iwd~~~~~~-----~~~~~-~~~~v~~~~~~~~----~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~  135 (359)
                          .|.+|++.-.....+     -.++. |.+.|++++|..+    +.+++    .|..|++-|..+++..+.+.+|.+
T Consensus       109 ----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg  184 (350)
T KOG0641|consen  109 ----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG  184 (350)
T ss_pred             ----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence                789999876544322     23445 8999999999653    45555    778899999999999999999988


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEEee--cc-----cccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKYIT--AH-----ASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~~~--~~-----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      .+- .-+++++..  +++ |+.|.+|++|+.+-. ++..+.  -|     ...|.+++..|.|++|++|-.|.. ..+||
T Consensus       185 hil-alyswn~~m--~~s-gsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lyd  259 (350)
T KOG0641|consen  185 HIL-ALYSWNGAM--FAS-GSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYD  259 (350)
T ss_pred             cEE-EEEEecCcE--EEc-cCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEE
Confidence            654 334566543  554 999999999998753 333332  12     256899999999999999999999 99999


Q ss_pred             cCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEee
Q 018248          208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIR  287 (359)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (359)
                      ++.++.++.+..  |...|.++.|||...+|++++.|..|++-|++..-..                             
T Consensus       260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-----------------------------  308 (350)
T KOG0641|consen  260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-----------------------------  308 (350)
T ss_pred             eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchhh-----------------------------
Confidence            999999999987  7899999999999999999999999999999764311                             


Q ss_pred             eecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          288 GVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                       .+|.+.-        .-|.+.+..+.|+|+.-.+++.++|.++.+|.++
T Consensus       309 -el~~~vv--------~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  309 -ELPIMVV--------AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             -cCceEEE--------EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence             1221111        1244566789999998889999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-28  Score=183.34  Aligned_cols=237  Identities=14%  Similarity=0.155  Sum_probs=190.6

Q ss_pred             CCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            6 PITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         6 ~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .+.+..++|+++. ..+++++ ||+++|||+..... ....++ .|..+|..+.+....+..++.+.   .|++|++|+.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsS---WD~TiKLW~~  134 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFK-EHKREVYSVDWNTVRRRIFLTSS---WDGTIKLWDP  134 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHH-hhhhheEEeccccccceeEEeec---cCCceEeecC
Confidence            4678899999864 3455555 99999999764333 234555 79999999999887776666653   7999999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      ..++.++++. |...|....|+|.. .+++   .|+++++||++.......++.|...+.++.|+..... ++++ |+.|
T Consensus       135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~T-g~vd  212 (311)
T KOG0277|consen  135 NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLAT-GGVD  212 (311)
T ss_pred             CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEe-cCCC
Confidence            9999999998 99999999999964 4444   8999999999654444448888888888999887765 3444 7789


Q ss_pred             eeEEEEecCC--eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcE-EEEeecCCCCcceEEEEecC-
Q 018248          159 GQVRVEDYGT--KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSL-LQEMRRGAERAEIYSLAFSS-  233 (359)
Q Consensus       159 ~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~-  233 (359)
                      +.|+.|+.+.  .++..+.+|.-.|..++|||.. .+||+++.|=+ ++|||...+.. +.+...  |...+..+.||+ 
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLDWSLF  289 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEeccccccc
Confidence            9999999876  5677889999999999999965 48999999999 99999875543 333433  778899999997 


Q ss_pred             CCCEEEEEcCCCcEEEEEc
Q 018248          234 NAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~  252 (359)
                      ++.++|+++.|+.++||+.
T Consensus       290 ~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  290 DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cCceeeecccccceeeecc
Confidence            6679999999999999984

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.3e-26  Score=198.18  Aligned_cols=240  Identities=12%  Similarity=0.102  Sum_probs=180.5

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceee-----------eecccCCCCceeEEEEec-cCCEEEEEecCCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMR-----------RDFDRNPRGGTQLVSMLF-RSNIICLVNSGPH   73 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~-----------~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~   73 (359)
                      ..|.....++|+..+++++ +.....|+...+...+.           ..+. ||.+.|..++|++ +++.++.++    
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS----   95 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTAS----   95 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEe----
Confidence            4566666777866666666 66666776543321110           1233 8999999999998 667777666    


Q ss_pred             CCCeEEEEECCCc-------cEEeeec-cCcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeee
Q 018248           74 QSNKVMIWDDHEN-------RYLGELS-FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCD  141 (359)
Q Consensus        74 ~d~~i~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (359)
                      .|++|++||+.++       +.+..+. |...|.+++|+|++ .+++   .|+.|++||+++++.+..+..|...+..++
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            7999999998765       2455666 88999999999975 4555   799999999999999889988999999999


Q ss_pred             eecCCCccEEEecCCCCeeEEEEecC-CeeeEEeeccccc-ccEEEEccCCcEEEEEe----CCCCeEEEEEcCCCcE-E
Q 018248          142 VSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASR-IASIAMTLDGRFVATAS----SKGTLIRVFNTMDGSL-L  214 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~----~dg~~i~iwd~~~~~~-~  214 (359)
                      |+|++..  +++ ++.|+.|++|+.+ ++.+..+.+|.+. ...+.|.+++..+++++    .|+. |++||+++... +
T Consensus       176 ~spdG~l--Lat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~~p~  251 (493)
T PTZ00421        176 WNLDGSL--LCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMASPY  251 (493)
T ss_pred             EECCCCE--EEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCCCce
Confidence            9998764  665 6789999998876 4566777888764 45678899888777654    4788 99999987653 3


Q ss_pred             EEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCCC
Q 018248          215 QEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDS  256 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~  256 (359)
                      .....+ ....+....|++++++|++++ .|+.|++||+.++.
T Consensus       252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            333321 334566778999999998887 59999999998865

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.1e-27  Score=180.05  Aligned_cols=272  Identities=11%  Similarity=0.075  Sum_probs=200.7

Q ss_pred             CCCCCCceEEEEEccC-CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            2 NQPDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      .++..+.|.+++|||. ..++++++ |++||+|+++.......+... .|.+++..++|+-++..++..+    .|+.++
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~----~Dk~~k   97 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGG----CDKQAK   97 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeec----cCCceE
Confidence            4678899999999994 45556777 999999999863222222222 6899999999999998877777    789999


Q ss_pred             EEECCCccEEeeeccCcceeEEEEeccee--EEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           80 IWDDHENRYLGELSFRSEVKNVRLRRDRI--VVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        80 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      +||+.+++....-.|..+|..+.|-+...  .++   .|.+|+.||++..+++.++..++. +.  +..--...  ++. 
T Consensus        98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vY--a~Dv~~pm--~vV-  171 (347)
T KOG0647|consen   98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VY--AADVLYPM--AVV-  171 (347)
T ss_pred             EEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-ee--ehhccCce--eEE-
Confidence            99999997776666999999999987655  445   899999999999999888876543 33  22222222  332 


Q ss_pred             CCCCeeEEEEecCCeeeE--Ee-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC--cEEEEeecCCC-------
Q 018248          155 GLLKGQVRVEDYGTKKSK--YI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG--SLLQEMRRGAE-------  222 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~--~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~--~~~~~~~~~~~-------  222 (359)
                      +..++.|.++.+...+..  .+ ...+-.++|++..+|....|.|+-+|. +.|..+..+  +.-..|+-|..       
T Consensus       172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~~  250 (347)
T KOG0647|consen  172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVNDD  250 (347)
T ss_pred             EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCCc
Confidence            445888888887653321  11 123456889999999888899999999 999988776  33334444221       


Q ss_pred             CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248          223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ  302 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (359)
                      --.|++++|+|....|+|++.||+..+||-+...+..                                   .       
T Consensus       251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk-----------------------------------~-------  288 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK-----------------------------------T-------  288 (347)
T ss_pred             eEEecceEeecccceEEEecCCceEEEecchhhhhhh-----------------------------------c-------
Confidence            1257889999999999999999999999988766331                                   0       


Q ss_pred             EeecCCcEEEeeecccCCEEEEEec
Q 018248          303 FRLPENVQYLVGFGRQNNTIVIVGL  327 (359)
Q Consensus       303 ~~~~~~~v~~~~~s~~~~~l~~~~~  327 (359)
                      .+.+..+|++++|+.+|.+++-+..
T Consensus       289 s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  289 SETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             cCcCCCccceeEecCCCCEEEEEee
Confidence            1223468899999999988775543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3.9e-28  Score=205.85  Aligned_cols=235  Identities=16%  Similarity=0.191  Sum_probs=208.8

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      +.+.+..|-|.++++++|. .|.+.+||+..........   +|.+.++.++..|++...++++    .|.+|++||..-
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~---AHdgaIWsi~~~pD~~g~vT~s----aDktVkfWdf~l  485 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR---AHDGAIWSISLSPDNKGFVTGS----ADKTVKFWDFKL  485 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh---ccccceeeeeecCCCCceEEec----CCcEEEEEeEEE
Confidence            4688999999999999999 9999999999766553333   7999999999999999999998    799999999531


Q ss_pred             -----cc--E------EeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248           86 -----NR--Y------LGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        86 -----~~--~------~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                           +.  .      .++++.+..|.|+.++||+++++   .|++++||-+.+.+....+.+|.-||.++.++|+++. 
T Consensus       486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl-  564 (888)
T KOG0306|consen  486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL-  564 (888)
T ss_pred             EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe-
Confidence                 11  1      13344678999999999999999   8999999999999999999999999999999999874 


Q ss_pred             EEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248          150 VMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS  228 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~  228 (359)
                       +++ |+.|..|++|-.+ +.+-+.+.+|...|.++.|-|....+.+++.|+. |+-||-...+.++.+.+  |...|++
T Consensus       565 -ivT-gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~c  639 (888)
T KOG0306|consen  565 -IVT-GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWC  639 (888)
T ss_pred             -EEe-ccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chheeee
Confidence             555 8899999999988 4777889999999999999999999999999999 99999999999999988  6689999


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          229 LAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ++.+|+|.++++++.|.+|++|....
T Consensus       640 Lav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  640 LAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999998765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-28  Score=194.40  Aligned_cols=238  Identities=13%  Similarity=0.202  Sum_probs=187.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..+|..+.||||.++|++|+ +..+.+||+.+++..  ..+..+|...+.+.+|.|++..++..+    .|+.+..||
T Consensus       267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs----~dr~i~~wd  340 (519)
T KOG0293|consen  267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGS----PDRTIIMWD  340 (519)
T ss_pred             cccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecC----CCCcEEEec
Confidence            5889999999999999999888 999999999998766  444435667888999999988866655    689999999


Q ss_pred             CCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +.. ..+...+  ....|.+++.++||++++   .|..|++|+.++......+. ...++...+++.+++..++   .-.
T Consensus       341 lDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv---nL~  415 (519)
T KOG0293|consen  341 LDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV---NLQ  415 (519)
T ss_pred             CCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE---Ecc
Confidence            654 4444444  346799999999998887   89999999987655444333 3567788888888875333   346


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccE--EEEc-cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIAS--IAMT-LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~--~~~s-~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      +..+++|+... ..++.+.+|+..-.-  -+|- .+..++|+|++|+. |+||+..+|+++.++.+  |...|++++|+|
T Consensus       416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vNcVswNP  492 (519)
T KOG0293|consen  416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVNCVSWNP  492 (519)
T ss_pred             cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--CcceeeEEecCC
Confidence            88999998874 445566777654222  2343 35579999999999 99999999999999998  778999999999


Q ss_pred             C-CCEEEEEcCCCcEEEEEccCC
Q 018248          234 N-AQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       234 ~-~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      . -.++|+|++||+||||.....
T Consensus       493 ~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  493 ADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCHHHhhccCCCCeEEEecCCcc
Confidence            4 568999999999999988754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.6e-28  Score=178.41  Aligned_cols=260  Identities=15%  Similarity=0.233  Sum_probs=198.9

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEec--cCCEEEEEecCCCCCCe
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLF--RSNIICLVNSGPHQSNK   77 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~~~~d~~   77 (359)
                      +..|.+-|..+...--|++||+++ |++|+|+...+... ....++. ||.+++.-++|..  -++.++.++    .||+
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScs----YDgk   81 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCS----YDGK   81 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEee----cCce
Confidence            457889999999999999999999 99999999986654 6667777 9999999999986  456666666    7999


Q ss_pred             EEEEECCCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           78 VMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      |.||.-.+++-.                                    .......|...+++++|.|++-++.|++ ++.
T Consensus        82 VIiWke~~g~w~------------------------------------k~~e~~~h~~SVNsV~wapheygl~Lac-asS  124 (299)
T KOG1332|consen   82 VIIWKEENGRWT------------------------------------KAYEHAAHSASVNSVAWAPHEYGLLLAC-ASS  124 (299)
T ss_pred             EEEEecCCCchh------------------------------------hhhhhhhhcccceeecccccccceEEEE-eeC
Confidence            999985554211                                    1223345677788899999998888998 778


Q ss_pred             CeeEEEEecCC----eeeEEeecccccccEEEEccC---C-----------cEEEEEeCCCCeEEEEEcCCCcEE--EEe
Q 018248          158 KGQVRVEDYGT----KKSKYITAHASRIASIAMTLD---G-----------RFVATASSKGTLIRVFNTMDGSLL--QEM  217 (359)
Q Consensus       158 d~~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~dg~~i~iwd~~~~~~~--~~~  217 (359)
                      ||.|.|...+.    ...+....|.-.+++++|.|-   |           +.|++|+.|.. |+||+..+++-+  ..+
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l  203 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTL  203 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhh
Confidence            99999944332    234556789999999999986   4           56999999999 999998876432  335


Q ss_pred             ecCCCCcceEEEEecCCC----CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248          218 RRGAERAEIYSLAFSSNA----QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY  293 (359)
Q Consensus       218 ~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (359)
                      ..  |...|..++|.|.-    .+|++++.||+|.||-.+... .+                             +-.. 
T Consensus       204 ~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~-----------------------------wk~t-  250 (299)
T KOG1332|consen  204 EG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EP-----------------------------WKKT-  250 (299)
T ss_pred             hh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-Cc-----------------------------cccc-
Confidence            55  88899999999964    489999999999999887332 11                             0000 


Q ss_pred             EecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEe
Q 018248          294 FSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQL  347 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  347 (359)
                              .++--...+..+.||+.|+.|++++.|.++.+|+=+.  .|+-++.
T Consensus       251 --------ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~--~Gkw~~v  294 (299)
T KOG1332|consen  251 --------LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV--DGKWEEV  294 (299)
T ss_pred             --------ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC--CCcEEEc
Confidence                    0111235688999999999999999999999997655  4555443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=3.3e-29  Score=194.48  Aligned_cols=226  Identities=16%  Similarity=0.274  Sum_probs=183.7

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK  125 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~  125 (359)
                      ...|.++.  ++...++...    .|++|+|||..+..++..+. |.+.|.|+.+...  .++   .|.+|++||.++++
T Consensus       197 skgVYClQ--YDD~kiVSGl----rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQ--YDDEKIVSGL----RDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEE--ecchhhhccc----ccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccCCc
Confidence            34455544  4455444333    68999999999999988887 9999999998654  444   89999999999999


Q ss_pred             eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee----eEEeecccccccEEEEccCCcEEEEEeCCCC
Q 018248          126 LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----SKYITAHASRIASIAMTLDGRFVATASSKGT  201 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  201 (359)
                      ++.++-.|-..+--+.|+.  .  ++++ ++.|.++.+|+.....    .+.+.+|...|+.+.|+  .+++++++.|.+
T Consensus       269 ~l~tlihHceaVLhlrf~n--g--~mvt-cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRT  341 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSN--G--YMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT  341 (499)
T ss_pred             hhhHHhhhcceeEEEEEeC--C--EEEE-ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCce
Confidence            9999988888776666643  2  2444 6789999999987633    34567999999999994  569999999999


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCcee
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAIS  281 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (359)
                       |++|++.+++.++++.+  |...|-|+.+  .++++++|+.|.+|++||+..+...                       
T Consensus       342 -ikvW~~st~efvRtl~g--HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL-----------------------  393 (499)
T KOG0281|consen  342 -IKVWSTSTCEFVRTLNG--HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL-----------------------  393 (499)
T ss_pred             -EEEEeccceeeehhhhc--ccccceehhc--cCeEEEecCCCceEEEEeccccHHH-----------------------
Confidence             99999999999999987  7788988888  6899999999999999999998732                       


Q ss_pred             eeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          282 SFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                ++         ++.|++-|.++.|.  .+.|++|+.||+|+||++...
T Consensus       394 ----------Rv---------LeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  394 ----------RV---------LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             ----------HH---------HhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence                      22         34456778899995  479999999999999998654

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=4e-26  Score=197.70  Aligned_cols=199  Identities=14%  Similarity=0.218  Sum_probs=158.2

Q ss_pred             cCcceeEEEEec-ceeEEE---ecCeEEEEEcccc-------eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           94 FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDL-------KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        94 ~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      |.+.|.+++|+| ++.+++   .|++|++||+.++       +.+..+.+|...+..++|+|++.. ++++ ++.|+.|+
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaS-gs~DgtVr  151 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLAS-AGADMVVN  151 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEE-EeCCCEEE
Confidence            889999999999 776666   8999999999654       346678889999999999998754 3554 66799999


Q ss_pred             EEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc-ceEEEEecCCCCEEEE
Q 018248          163 VEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA-EIYSLAFSSNAQWLAA  240 (359)
Q Consensus       163 ~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~  240 (359)
                      +|+... .....+..|...|.+++|+|+|.+|++++.|+. |++||+++++.+..+..  |.+ .+..+.|.+++..|++
T Consensus       152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~--H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEA--HASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEec--CCCCcceEEEEcCCCCeEEE
Confidence            999764 566778889999999999999999999999999 99999999999888876  433 3457789998888776


Q ss_pred             Ec----CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCcEEEeee
Q 018248          241 SS----DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENVQYLVGF  315 (359)
Q Consensus       241 ~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  315 (359)
                      ++    .|+.|++||+++.....                                         .....+ ...+....|
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~-----------------------------------------~~~~~d~~~~~~~~~~  267 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPY-----------------------------------------STVDLDQSSALFIPFF  267 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCce-----------------------------------------eEeccCCCCceEEEEE
Confidence            54    47899999998754210                                         000011 123456788


Q ss_pred             cccCCEEEEEec-CCeEEEEEeCC
Q 018248          316 GRQNNTIVIVGL-DGSYYKCEFDP  338 (359)
Q Consensus       316 s~~~~~l~~~~~-dg~i~v~~~~~  338 (359)
                      +++++.|++++. ||.|++|++..
T Consensus       268 d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        268 DEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             cCCCCEEEEEEeCCCeEEEEEeeC
Confidence            999999999885 99999999975

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.6e-28  Score=182.37  Aligned_cols=238  Identities=15%  Similarity=0.188  Sum_probs=200.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|++.|++...+.+...-|++. |=+-++||.-++..+  ..|  .|..-|..++|+.+.+.++..+    .+..++|+|
T Consensus        57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf--~hkhivk~~af~~ds~~lltgg----~ekllrvfd  128 (334)
T KOG0278|consen   57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSF--EHKHIVKAVAFSQDSNYLLTGG----QEKLLRVFD  128 (334)
T ss_pred             ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhh--hhhheeeeEEecccchhhhccc----hHHHhhhhh
Confidence            5899999999999999999999 999999999888777  566  4889999999999888888766    679999999


Q ss_pred             CCCcc-EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENR-YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      ++..+ +..++. |.+.|..+.|....+.++   .|++|++||.++++.++.+.. ..++..+.++++++.+.++.    
T Consensus       129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~----  203 (334)
T KOG0278|consen  129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY----  203 (334)
T ss_pred             ccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec----
Confidence            87653 455565 999999999977655554   899999999999999999975 45688999999998755554    


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      .+.|.+|+... ..++.+. -...|.+..++|+...+++|++|.. ++.||..+++.+..+..+ |.++|.++.|+|||.
T Consensus       204 gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGE  280 (334)
T ss_pred             CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC-CCCceEEEEECCCCc
Confidence            45788888765 4444443 3567899999999999999999999 999999999999887333 779999999999999


Q ss_pred             EEEEEcCCCcEEEEEccCCCC
Q 018248          237 WLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ..++|+.||+|++|.+..++.
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eeeccCCCceEEEEEecCCCc
Confidence            999999999999999987763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.5e-27  Score=179.39  Aligned_cols=281  Identities=17%  Similarity=0.215  Sum_probs=205.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCccee----eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIM----RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .|...|++|+|+.||++||+++ |+.|+||++..+....    ++.++   -+..+.+.|+|+...+++...   ...++
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~FapDc~s~vv~~~---~g~~l  157 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFAPDCKSVVVSVK---RGNKL  157 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEECCCcceEEEEEc---cCCEE
Confidence            5899999999999999999999 9999999998765432    23333   334567788898877766554   34789


Q ss_pred             EEEECCCc---cEEe--------eec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248           79 MIWDDHEN---RYLG--------ELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV  142 (359)
Q Consensus        79 ~iwd~~~~---~~~~--------~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (359)
                      ++|.....   ....        .+.  |...+..+-...++.+++   .|..|.+|+++ |+.+..+......-...++
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            99975332   1111        111  455666677777788887   89999999997 9999998877766778899


Q ss_pred             ecCCCccEEEecCCCCeeEEEEec----CC-----eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC---
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDY----GT-----KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD---  210 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~----~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~---  210 (359)
                      +|++..  ++++|. .-.|++|..    ++     ..+..+.+|...|..++|+|+.+.+++.+.||. ++|||+.-   
T Consensus       237 SP~GRF--ia~~gF-TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~  312 (420)
T KOG2096|consen  237 SPDGRF--IAVSGF-TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYE  312 (420)
T ss_pred             CCCCcE--EEEecC-CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEe
Confidence            999875  665453 556888754    22     335567899999999999999999999999999 99999742   


Q ss_pred             ----CcEEEEeec--CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          211 ----GSLLQEMRR--GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       211 ----~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                          .+.+++...  +...+....++++|+|+.|+.+. ...++++..+.++..+.                        
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~------------------------  367 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE------------------------  367 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh------------------------
Confidence                122222211  11223455899999999998765 44699999998774320                        


Q ss_pred             EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                               +        -+.+.+.|.+++|+++|+++++++ |..++++.-.+
T Consensus       368 ---------~--------e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp  403 (420)
T KOG2096|consen  368 ---------L--------EDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP  403 (420)
T ss_pred             ---------H--------HHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence                     0        234667899999999999998754 66788886555

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=5.8e-26  Score=197.65  Aligned_cols=220  Identities=8%  Similarity=0.066  Sum_probs=166.2

Q ss_pred             CCCeEEEEECCCccEEeeec-cCcceeEEEEecc-eeEEE---ecCeEEEEEcccce--------eeeeEeccCCCceee
Q 018248           74 QSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRD-RIVVV---LNQKVYVYNFTDLK--------LVDQIETVVNPTGLC  140 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~  140 (359)
                      .++.|++|+......+..+. |...|.+++|+|+ +.+++   .|+.|++||+.++.        .+..+.+|...+..+
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV  131 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII  131 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence            57899999988877787887 9999999999996 56666   89999999996532        334567888899999


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      +|+|++.. ++++ ++.|+.|++|+..... ...+. |...|.+++|+|+|.+|++++.|+. |+|||+++++.+.++..
T Consensus       132 af~P~g~~-iLaS-gS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        132 DWNPMNYY-IMCS-SGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EECCCCCe-EEEE-EeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEec
Confidence            99998765 3344 5679999999987643 33443 6678999999999999999999999 99999999999988876


Q ss_pred             CCCCcceE-----EEEecCCCCEEEEEcCCC----cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248          220 GAERAEIY-----SLAFSSNAQWLAASSDKG----TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL  290 (359)
Q Consensus       220 ~~~~~~i~-----~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (359)
                        |.+.+.     ...|++++.+|++++.|+    +|+|||++.....                        +.      
T Consensus       208 --H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p------------------------l~------  255 (568)
T PTZ00420        208 --HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA------------------------LV------  255 (568)
T ss_pred             --ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc------------------------eE------
Confidence              444432     234568999999888764    7999999864311                        00      


Q ss_pred             ceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          291 PKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                        ...       +....+.+.-....+++.++++|+.|+.|++|++..
T Consensus       256 --~~~-------ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        256 --TMS-------IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             --EEE-------ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence              000       111122333333455688899999999999999975

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=5.3e-28  Score=186.30  Aligned_cols=243  Identities=14%  Similarity=0.191  Sum_probs=204.4

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec---------cCcceeEEEEecceeEEE---ecCe
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS---------FRSEVKNVRLRRDRIVVV---LNQK  115 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~---~d~~  115 (359)
                      |....+.+..|+|++++++..+    .||.|.+||..+|+....++         +..+|.|+.|+.|...++   .||.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCCCCceEeecc----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence            5567778889999999988777    79999999999997766553         567899999999999998   8999


Q ss_pred             EEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEE
Q 018248          116 VYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFV  193 (359)
Q Consensus       116 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  193 (359)
                      |++|.+++|++++.+. .|...+.++.|+.++..  +.+ ++.|.++++ -...++.++.+++|...|+...|++||..+
T Consensus       287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq--iLS-~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~i  363 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ--ILS-ASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHI  363 (508)
T ss_pred             EEEEEEecchHHHHhhhhhccCeeEEEEccCcch--hhc-ccccceEEEeccccchhHHHhcCccccccceEEcCCCCeE
Confidence            9999999999999996 78889999999999887  444 567999999 566779999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCc
Q 018248          194 ATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNL  272 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  272 (359)
                      ++++.||+ |++|+.++.+++.+|+......+|+++..-|. ...++.+...++|+|.++...-.               
T Consensus       364 isaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV---------------  427 (508)
T KOG0275|consen  364 ISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV---------------  427 (508)
T ss_pred             EEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE---------------
Confidence            99999999 99999999999999987766778999888874 45788888999999998875431               


Q ss_pred             cCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          273 SSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                         +.|.+.      +-..+.-..++.||.|.++++.++|+.+|.|.+-.
T Consensus       428 -------------------rsfsSG------kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s  468 (508)
T KOG0275|consen  428 -------------------RSFSSG------KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS  468 (508)
T ss_pred             -------------------eeeccC------CccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence                               112211      11123445678999999999999999999998866

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-26  Score=177.15  Aligned_cols=239  Identities=13%  Similarity=0.190  Sum_probs=190.2

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC--EEEEEecCCCCCCeE
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN--IICLVNSGPHQSNKV   78 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~~d~~i   78 (359)
                      .+.|..+|++++.+  |.++|+|+ |.+|+|||+....+.-  .+- .|.+.++++.|.+.-.  .++.++    .||.|
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg--~ll-~HagsitaL~F~~~~S~shLlS~s----dDG~i  109 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG--ILL-SHAGSITALKFYPPLSKSHLLSGS----DDGHI  109 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc--cee-ccccceEEEEecCCcchhheeeec----CCCcE
Confidence            36799999999975  88999999 9999999998654442  222 5899999999887654  444444    79999


Q ss_pred             EEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           79 MIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      .+|+...-+++..++ |.+.|+.++.+|.+++.+   .|+.++.||+-+|+....+.... ....+.|+|.++.+++.. 
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~-  187 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSG-  187 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEe-
Confidence            999999999999998 999999999999998877   89999999998887766655433 335689999998755543 


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe--c
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF--S  232 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s  232 (359)
                         ...|-+|..+...+.........+.++.|- ++..|++|.+++. |.+||..+..+...+.+  |+..|-++.+  .
T Consensus       188 ---~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~~  260 (362)
T KOG0294|consen  188 ---RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASYTN  260 (362)
T ss_pred             ---ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEEec
Confidence               446777777664443333333556777774 5678899999999 99999999999988987  8889999884  4


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      |++.+|++++.||.|+|||++.....
T Consensus       261 ~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  261 PEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             CCceEEEEeccCceEEEEEccccccC
Confidence            67889999999999999999987543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=6.1e-26  Score=173.55  Aligned_cols=269  Identities=11%  Similarity=0.089  Sum_probs=199.5

Q ss_pred             CCCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            1 MNQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         1 m~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      +.++..+.|++|.|+|.+..|++++ ||++++|+.......  ..+  .|..++...+|.. ....++.+    -||.|+
T Consensus         8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~--~~~~plL~c~F~d-~~~~~~G~----~dg~vr   78 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKF--KHGAPLLDCAFAD-ESTIVTGG----LDGQVR   78 (323)
T ss_pred             cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhe--ecCCceeeeeccC-CceEEEec----cCceEE
Confidence            3567889999999999999998888 999999999876444  444  3788888877764 33444444    689999


Q ss_pred             EEECCCccEEeeeccCcceeEEEEecc-eeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           80 IWDDHENRYLGELSFRSEVKNVRLRRD-RIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        80 iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      .+|+.+++....-.|...|.++..++. +.+++  .|++|++||.+.......+....   .+.+++-.++.  |+. |.
T Consensus        79 ~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~~--LvV-g~  152 (323)
T KOG1036|consen   79 RYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGNR--LVV-GT  152 (323)
T ss_pred             EEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCCE--EEE-ee
Confidence            999999988888889999999999975 45555  99999999998755555554333   34455556665  333 44


Q ss_pred             CCeeEEEEecCCeeeE-E--eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----cEEEEeecCCC-------
Q 018248          157 LKGQVRVEDYGTKKSK-Y--ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----SLLQEMRRGAE-------  222 (359)
Q Consensus       157 ~d~~v~~~~~~~~~~~-~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----~~~~~~~~~~~-------  222 (359)
                      .+..+.+|+.+..... .  -..-+-.+.|+++-|++.-.++++-||. |.+=.+...    +....|+.|..       
T Consensus       153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~  231 (323)
T KOG1036|consen  153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI  231 (323)
T ss_pred             cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceE
Confidence            6889999887752211 1  1234567899999999888899999998 877555443    33344443211       


Q ss_pred             CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248          223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ  302 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (359)
                      --+|++++|+|-...|+||+.||.|.+||+.+.+...                             .             
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~-----------------------------q-------------  269 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK-----------------------------Q-------------  269 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhh-----------------------------h-------------
Confidence            1279999999999999999999999999999887431                             0             


Q ss_pred             EeecCCcEEEeeecccCCEEEEEec
Q 018248          303 FRLPENVQYLVGFGRQNNTIVIVGL  327 (359)
Q Consensus       303 ~~~~~~~v~~~~~s~~~~~l~~~~~  327 (359)
                      +..-...|.+++|+.||..||+++.
T Consensus       270 ~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  270 LAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccCCCCceEEEEeccCCCeEEEEec
Confidence            1111246889999999999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.1e-26  Score=180.61  Aligned_cols=239  Identities=13%  Similarity=0.181  Sum_probs=191.0

Q ss_pred             CCCCceEEEEEccCCC---EEEEec-CCceEEEEcCCCcceeeeec-ccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDHG---CFATGT-ETGFRVYLSDPYKPIMRRDF-DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~---~l~~~~-d~~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .|.++|.+++|-....   .|++++ |.++++|..+.++....... ..||...|.+++...++..++.++    .|..|
T Consensus       142 Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS----~D~~l  217 (423)
T KOG0313|consen  142 GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS----WDTML  217 (423)
T ss_pred             cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec----cccee
Confidence            5889999888864333   488888 99999999987664432211 139999999999988888877777    79999


Q ss_pred             EEEECCC-------------------------ccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE
Q 018248           79 MIWDDHE-------------------------NRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI  130 (359)
Q Consensus        79 ~iwd~~~-------------------------~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~  130 (359)
                      .||+..+                         +.++..+. |.++|.++.|++.+..+.  .|.+|+.||+.+++....+
T Consensus       218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~  297 (423)
T KOG0313|consen  218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL  297 (423)
T ss_pred             eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeee
Confidence            9999321                         13444555 889999999998655544  9999999999999998888


Q ss_pred             eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC----eeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEE
Q 018248          131 ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT----KKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRV  205 (359)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~i  205 (359)
                      .+. ....++..+|..+  +|++ |+.|..+++|+.+.    -..+.+.+|++.|.++.|+|... .|++++.|++ +++
T Consensus       298 ~~~-ksl~~i~~~~~~~--Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~kl  372 (423)
T KOG0313|consen  298 TTN-KSLNCISYSPLSK--LLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKL  372 (423)
T ss_pred             ecC-cceeEeecccccc--eeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEE
Confidence            754 3456677777544  4676 88899999988765    34567889999999999999665 6789999999 999


Q ss_pred             EEcCCCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          206 FNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       206 wd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ||+++.+ ++..+.+  |...|.++.|. ++..|++|+.|.+|+|+.-..
T Consensus       373 WDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  373 WDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             EEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence            9999887 8989987  77899999997 577999999999999987543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.6e-26  Score=184.45  Aligned_cols=284  Identities=12%  Similarity=0.151  Sum_probs=213.8

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .+..+.|++|.|+|....|++|+ |+.++||.++.......+.+. -...++...+|.+++...++.++   ....++.|
T Consensus       210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~---rrky~ysy  285 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSG---RRKYLYSY  285 (514)
T ss_pred             CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecc---cceEEEEe
Confidence            35578999999999999999999 999999999854433333321 12678899999999986666665   45889999


Q ss_pred             ECCCccEEeeec----cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           82 DDHENRYLGELS----FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        82 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      |+.+.+....-.    ....+.....++++++++   ..|.|.+....+++.+..++. .+.+..++|+.+++. ++++ 
T Consensus       286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~-l~~~-  362 (514)
T KOG2055|consen  286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKE-LLAS-  362 (514)
T ss_pred             eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcE-EEEE-
Confidence            998876554332    234577788999999988   789999999999999988875 455778889888864 3443 


Q ss_pred             CCCCeeEEEEecCCee-eEEeecccccc--cEEEEccCCcEEEEEeCCCCeEEEEEcCC------CcEEEEeecCCCCcc
Q 018248          155 GLLKGQVRVEDYGTKK-SKYITAHASRI--ASIAMTLDGRFVATASSKGTLIRVFNTMD------GSLLQEMRRGAERAE  225 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~-~~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~~i~iwd~~~------~~~~~~~~~~~~~~~  225 (359)
                      | .+|.|.+|+.+... ++.+. ..+.|  ++++.++++.+||+|+..|. |.|||..+      .+++..+..  -...
T Consensus       363 ~-~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--Ltt~  437 (514)
T KOG2055|consen  363 G-GTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--LTTA  437 (514)
T ss_pred             c-CCceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--hhee
Confidence            3 48899999888754 44443 33444  56777899999999999999 99999653      345555543  3468


Q ss_pred             eEEEEecCCCCEEEEEcC--CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEE
Q 018248          226 IYSLAFSSNAQWLAASSD--KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF  303 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (359)
                      |++++|+||+++||.++.  +..+++-.+.+....                            +.|.+           .
T Consensus       438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF----------------------------sNfP~-----------~  478 (514)
T KOG2055|consen  438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF----------------------------SNFPT-----------S  478 (514)
T ss_pred             eeeeeeCcchhhhhhhhhccccceEEEeccceeee----------------------------ccCCC-----------C
Confidence            999999999999988874  567888888775511                            11100           1


Q ss_pred             eecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       304 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ..+-+.+++++|||.+.+||.|.++|.+.+|++.
T Consensus       479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            1233788999999999999999999999999874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=4.3e-26  Score=170.41  Aligned_cols=236  Identities=19%  Similarity=0.261  Sum_probs=200.2

Q ss_pred             CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      ..|.+.|-.++|+| ....|++++ |..|++||...++.......    .++-..+.|+|+++++++..    .|..|.+
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~----kdD~it~  132 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET----KGENINITWSPDGEYIAVGN----KDDRITF  132 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec----cCcceEEEEcCCCCEEEEec----CcccEEE
Confidence            35788899999998 456778888 99999999998877766554    45555678999999999888    7899999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .|.++.+.....+....+..+.|+.++.+++   ..|.|.|......+++..++.|.....++.|+|++++  +|+ |+.
T Consensus       133 id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry--fA~-GsA  209 (313)
T KOG1407|consen  133 IDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY--FAT-GSA  209 (313)
T ss_pred             EEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCce--Eee-ccc
Confidence            9999999998888888899999987665555   5589999999999999999999877667777777765  887 888


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      |..+.+|+.+. -+++.+..+.-+|..+.||.||++||+|++|.. |-|=++++|..+.+++   +.++-..++|+|...
T Consensus       210 DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~  285 (313)
T KOG1407|consen  210 DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWHPKRP  285 (313)
T ss_pred             cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEecCCCc
Confidence            99999998765 677888889999999999999999999999999 9999999999999998   678999999999999


Q ss_pred             EEEEEcCC---------CcEEEEEcc
Q 018248          237 WLAASSDK---------GTVHVFGLK  253 (359)
Q Consensus       237 ~l~~~~~d---------g~i~iw~~~  253 (359)
                      +||-+++|         |.|++|-+.
T Consensus       286 LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  286 LLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eeeEEecCCCCccccccceeEEecCC
Confidence            99988754         456666554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=7.6e-27  Score=205.84  Aligned_cols=245  Identities=17%  Similarity=0.193  Sum_probs=196.8

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCC------C----c------ceeeeecccCCCCceeEEEEeccCCEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------Y----K------PIMRRDFDRNPRGGTQLVSMLFRSNII   65 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~------~~~~~~~~~~h~~~v~~~~~~~~~~~~   65 (359)
                      ..|.+.|.|+.|+|||++||+|+ |+.|.||....      +    .      ......+. +|...|..++|+|++.++
T Consensus        66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEE
Confidence            36899999999999999999999 88899999873      0    0      01223444 899999999999988888


Q ss_pred             EEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC------
Q 018248           66 CLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN------  135 (359)
Q Consensus        66 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~------  135 (359)
                      +.++    .|++|.+|+..+.+.+..++ |...|..+.|.|-|++++   .|++|++|++.+-...+.+..+..      
T Consensus       145 vS~s----~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  145 VSVS----LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT  220 (942)
T ss_pred             EEec----ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence            8888    79999999999999999998 999999999999999999   899999999877666666654332      


Q ss_pred             CceeeeeecCCCccEEEecCCC---CeeEEEEecCC-eeeEEeecccccccEEEEccC-----Cc------------EEE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLL---KGQVRVEDYGT-KKSKYITAHASRIASIAMTLD-----GR------------FVA  194 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~---d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~  194 (359)
                      ...-+.|+|+|+.  |++....   -..+.|-.+.+ +.-..+.+|.+++.+++|+|.     .+            .+|
T Consensus       221 ~f~RlSWSPDG~~--las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A  298 (942)
T KOG0973|consen  221 FFLRLSWSPDGHH--LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA  298 (942)
T ss_pred             eeeecccCCCcCe--ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence            2345778888876  6553222   23455544433 556778899999999999981     11            688


Q ss_pred             EEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          195 TASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       195 ~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +|+.|++ |.||.....+++..... .....|.+++|+|||..|++++.||+|.+..++..+
T Consensus       299 vgSqDrS-lSVW~T~~~RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  299 VGSQDRS-LSVWNTALPRPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EecCCcc-EEEEecCCCCchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            9999999 99999877777765542 245689999999999999999999999999997654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.9e-25  Score=169.89  Aligned_cols=241  Identities=13%  Similarity=0.139  Sum_probs=188.4

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEeccee-EEE----ecCeEEEEEccc
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV----LNQKVYVYNFTD  123 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~----~d~~i~i~d~~~  123 (359)
                      .+.+..+.++.++..++.++    .|..+++||..+++.+.++. ++..+..++|..... .+.    .|.+|+..++.+
T Consensus        14 ~~~i~sl~fs~~G~~litss----~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSS----EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             CCceeEEEecCCCCEEEEec----CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence            67888999998888888866    78999999999999999998 666777888865444 443    688999999999


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLI  203 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i  203 (359)
                      .+.++.+.+|...|..++.+|-++.  +++ ++.|++|++|+.+....+-+. +...-..++|.|+|-++|++..... |
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d~--FlS-~S~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GLifA~~~~~~~-I  164 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDDT--FLS-SSLDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGLIFALANGSEL-I  164 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCCe--EEe-cccCCeEEeeEecCCCCceEE-ecCCCcceeECCCCcEEEEecCCCe-E
Confidence            9999999999999999999998865  444 678999999999853333222 2233456899999999999988877 9


Q ss_pred             EEEEcCCC--cEEEEeecC-CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248          204 RVFNTMDG--SLLQEMRRG-AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI  280 (359)
Q Consensus       204 ~iwd~~~~--~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (359)
                      ++||++..  .+..++... ......+.+.|||||++|+.++..+.+++.|.-.+....                     
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---------------------  223 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---------------------  223 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---------------------
Confidence            99999864  344444432 245689999999999999999999999999988876211                     


Q ss_pred             eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                  .+...      ...........|+||++++++|+.||+|++|++..
T Consensus       224 ------------tfs~~------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  224 ------------TFSGY------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             ------------eEeec------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence                        11111      00111225689999999999999999999999965

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1e-26  Score=188.90  Aligned_cols=279  Identities=14%  Similarity=0.170  Sum_probs=221.5

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcc-eeeeecc-cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKP-IMRRDFD-RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      -.|..-|.++.+|...+++.+|+.|.|+|||+..... .....+. .....-+..+.+.++++.+++.+    +-.++.|
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG----eastlsi  491 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG----EASTLSI  491 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc----ccceeee
Confidence            3588889999999999999999999999999974321 1111111 01255678888889998888776    5689999


Q ss_pred             EECCCccEEee--ec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           81 WDDHENRYLGE--LS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ||+........  +. .......++.+||.++.+   .||.|.|||+.+...++.+++|...+.++.+++++..  |-+ 
T Consensus       492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk--lWT-  568 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK--LWT-  568 (705)
T ss_pred             eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce--eec-
Confidence            99876544333  33 334677899999998877   9999999999999999999999999999999999987  555 


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      |+-|++|+.|+.+......-......|.++..+|++.+|++|-+++. +.|-..... ..+.+.  .|.+-|.++.|.+-
T Consensus       569 GGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp-~kyqlh--lheScVLSlKFa~c  644 (705)
T KOG0639|consen  569 GGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKP-EKYQLH--LHESCVLSLKFAYC  644 (705)
T ss_pred             CCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCc-cceeec--ccccEEEEEEeccc
Confidence            77899999998765322222234678999999999999999999998 888876433 333443  38899999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEe
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLV  313 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~  313 (359)
                      |+++++.+.|+.+..|...-+...                                            |+.++ ..|.+|
T Consensus       645 GkwfvStGkDnlLnawrtPyGasi--------------------------------------------FqskE~SsVlsC  680 (705)
T KOG0639|consen  645 GKWFVSTGKDNLLNAWRTPYGASI--------------------------------------------FQSKESSSVLSC  680 (705)
T ss_pred             CceeeecCchhhhhhccCccccce--------------------------------------------eeccccCcceee
Confidence            999999999999999998877622                                            22233 678999


Q ss_pred             eecccCCEEEEEecCCeEEEEEe
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      ..|.|.++|++|+.|....||.+
T Consensus       681 DIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  681 DISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeccCceEEEecCCCcceEEEEE
Confidence            99999999999999999999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.8e-26  Score=184.77  Aligned_cols=237  Identities=16%  Similarity=0.198  Sum_probs=195.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .+..|+++.|-.||++||+|. .|.|+|||..+  ....+.+. +|+.++..+.|++..+.++..++   .|+.+++||+
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~s---Dd~v~k~~d~  140 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLY-AHQAPVHVTKFSPQDNTMLVSGS---DDKVVKYWDL  140 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHh-hccCceeEEEecccCCeEEEecC---CCceEEEEEc
Confidence            457799999999999999999 99999999654  22334555 89999999999998887766554   5799999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEE-E---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVV-V---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .+......+. |.+.|++.+|+|....+ +   .||.|++||++.. ..+..+ .|..++..+.+-|.+..  ++++|  
T Consensus       141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~--iasAg--  215 (487)
T KOG0310|consen  141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSL--IASAG--  215 (487)
T ss_pred             CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCE--EEEcC--
Confidence            9888755666 99999999999976533 3   8999999999776 555555 47788998888888765  55543  


Q ss_pred             CeeEEEEecC-C-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248          158 KGQVRVEDYG-T-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       158 d~~v~~~~~~-~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                      .+.|++|+.. + +.+..+..|...|+|+++..++..|++++-|+. |++||+.+.+.+..+.   .+++|.+++.+|++
T Consensus       216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAVSPDD  291 (487)
T ss_pred             CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEecCCC
Confidence            4589999987 4 344445559999999999999999999999999 9999999999998887   56899999999999


Q ss_pred             CEEEEEcCCCcEEEEEccCCC
Q 018248          236 QWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       236 ~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +.++.|..+|.+.+=+....+
T Consensus       292 ~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  292 QTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             ceEEEecccceeeeehhhccc
Confidence            999999999988777555444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=5.2e-27  Score=185.91  Aligned_cols=233  Identities=15%  Similarity=0.242  Sum_probs=189.0

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      .++|+++.|.++++++++++ |+.+++|+++..+..  .++. ||.+.|..+.+......+  ++++  .|.+|++||+.
T Consensus       219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~v--Vsgs--~DRtiK~WDl~  291 (459)
T KOG0288|consen  219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRV--VSGS--ADRTIKLWDLQ  291 (459)
T ss_pred             CCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccce--eecc--ccchhhhhhhh
Confidence            46799999999999998888 999999999976555  5565 899999999887665553  3333  68999999999


Q ss_pred             CccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           85 ENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        85 ~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      ...+..++-....+.++..++. .++.  .|+.|+.||+++..+...++.+. .+..+.+++++..  +.+ .+.|.++.
T Consensus       292 k~~C~kt~l~~S~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~--lLs-ssRDdtl~  366 (459)
T KOG0288|consen  292 KAYCSKTVLPGSQCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLE--LLS-SSRDDTLK  366 (459)
T ss_pred             hhheeccccccccccceEecce-eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeE--Eee-ecCCCcee
Confidence            9999988877777888877622 2222  89999999999999998888765 7889999998876  444 34788999


Q ss_pred             EEecCCeee-EEeecc----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          163 VEDYGTKKS-KYITAH----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       163 ~~~~~~~~~-~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      +.+.++..+ ..+.+.    ....+.+.|||++.|+++|+.||. |+||++.++++...+........|++++|+|.|..
T Consensus       367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence            966655444 333321    234889999999999999999999 99999999999988886544447999999999999


Q ss_pred             EEEEcCCCcEEEEE
Q 018248          238 LAASSDKGTVHVFG  251 (359)
Q Consensus       238 l~~~~~dg~i~iw~  251 (359)
                      |++++.++.+.+|.
T Consensus       446 Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  446 LLSADKQKAVTLWT  459 (459)
T ss_pred             hhcccCCcceEecC
Confidence            99999999999993

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=7.2e-26  Score=191.45  Aligned_cols=283  Identities=12%  Similarity=0.124  Sum_probs=214.3

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc-----------CCEEEEEecCCCCCC
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR-----------SNIICLVNSGPHQSN   76 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~~~~~~~~~~~d~   76 (359)
                      -.++.|++....|.+.- |..++|||+..-...-+...-.-|...|+.+...|.           +..+..++    .|+
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS----sD~  402 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS----SDG  402 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec----CCC
Confidence            35788999999998887 999999999864433222111157888877776652           12234444    689


Q ss_pred             eEEEEECCCc---cEEee-----------------------------------eccCcceeEEEEecceeEEE---ecCe
Q 018248           77 KVMIWDDHEN---RYLGE-----------------------------------LSFRSEVKNVRLRRDRIVVV---LNQK  115 (359)
Q Consensus        77 ~i~iwd~~~~---~~~~~-----------------------------------~~~~~~v~~~~~~~~~~~~~---~d~~  115 (359)
                      +|++||+..+   +..+.                                   +.....+++++.+|+++.++   ..|.
T Consensus       403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn  482 (1080)
T KOG1408|consen  403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN  482 (1080)
T ss_pred             cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence            9999998652   11100                                   00122589999999999999   6789


Q ss_pred             EEEEEcccceeeeeEeccCCCceeeeeecCC-CccEEEecCCCCeeEEEEecCC--eeeEEeecc---------------
Q 018248          116 VYVYNFTDLKLVDQIETVVNPTGLCDVSQNA-GPMVMACPGLLKGQVRVEDYGT--KKSKYITAH---------------  177 (359)
Q Consensus       116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~---------------  177 (359)
                      +++|++...+....++.|...+.++.++... ...+||+ ++.|..|.+++...  ..++++.+|               
T Consensus       483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS-asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS-ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh-ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            9999999999999999999999888887643 2345565 77899999966532  112222222               


Q ss_pred             ----------------------------------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-C
Q 018248          178 ----------------------------------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-E  222 (359)
Q Consensus       178 ----------------------------------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-~  222 (359)
                                                        +..+..++..|..+++++++.|.. |+|||+++++..+.|++.. |
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~  640 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDH  640 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccC
Confidence                                              224566777788889999999999 9999999999999998743 4


Q ss_pred             CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248          223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ  302 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (359)
                      .+....+...|.|-||++.+.|.++.++|+-+++..                                          ++
T Consensus       641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv------------------------------------------A~  678 (1080)
T KOG1408|consen  641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV------------------------------------------AQ  678 (1080)
T ss_pred             CCceEEEEECCCccEEEEeecCCceEEEEeccchhh------------------------------------------hh
Confidence            578889999999999999999999999999998843                                          12


Q ss_pred             EeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          303 FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       303 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      +-.|.+.|+.+.|.+|.+.|++++.||.|+||+++.+
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            3456678999999999999999999999999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=8.2e-26  Score=171.94  Aligned_cols=285  Identities=14%  Similarity=0.164  Sum_probs=213.0

Q ss_pred             CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcc------e----e--eeecccCCCCceeEEEEeccCCEEEEE
Q 018248            3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKP------I----M--RRDFDRNPRGGTQLVSMLFRSNIICLV   68 (359)
Q Consensus         3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~------~----~--~~~~~~~h~~~v~~~~~~~~~~~~~~~   68 (359)
                      .+|.+.|+++...+ .|+++++|+ ||.|.+||++....      +    .  .+.-+.+|...|..+.|.|-...+++.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            57999999999998 689999999 99999999975331      1    1  122234788899999999988888776


Q ss_pred             ecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce---eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248           69 NSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR---IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV  142 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (359)
                      +.   .|.++++||..+-+....++.++.|.+-+++|-.   .+++   .+-.|++.|+.+|..-+.+.+|...+..+.|
T Consensus       120 sS---FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  120 SS---FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             cc---ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            65   7999999999999999999999999999999853   3444   7889999999999999999999999999999


Q ss_pred             ecCCCccEEEecCCCCeeEEEEecCC--eeeEE--------------eecccccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDYGT--KKSKY--------------ITAHASRIASIAMTLDGRFVATASSKGTLIRVF  206 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~--------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw  206 (359)
                      +|..+. +|+ +|+.||.|++|+.+.  .+...              -.+|.+.++.++|+.++.++++++.|.. +++|
T Consensus       197 sp~~e~-vLa-tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r-~r~w  273 (397)
T KOG4283|consen  197 SPSSEW-VLA-TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR-IRVW  273 (397)
T ss_pred             ccCcee-EEE-ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-eEEe
Confidence            998875 344 488999999998764  22222              2457788999999999999999999999 9999


Q ss_pred             EcCCCcEEE-EeecCCCCcceEEEEe---cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          207 NTMDGSLLQ-EMRRGAERAEIYSLAF---SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       207 d~~~~~~~~-~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                      +..+|+... .+-.-.|+. -.++++   +.+...++---.++.+.++++-++...                        
T Consensus       274 n~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i------------------------  328 (397)
T KOG4283|consen  274 NMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV------------------------  328 (397)
T ss_pred             ecccCcccccccccccccc-cccceEEEeecccceEEEEecCCeEEEEEccCceEE------------------------
Confidence            998876422 111110111 111111   223333333334466777776665511                        


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                               +.         +..+...+.+.++.|+=+...+|..|+.++.|..
T Consensus       329 ---------r~---------l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  329 ---------RR---------LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ---------Ee---------eecccceeeEEeecCchhhhhccccCCccccccc
Confidence                     11         2223345778899999899999999999999965

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=7.9e-25  Score=190.63  Aligned_cols=224  Identities=10%  Similarity=0.130  Sum_probs=168.0

Q ss_pred             CCCCceEEEEEccC-CCEEEEec-CCceEEEEcCCCcce------eeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            4 PDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDPYKPI------MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         4 ~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      .|...|.+++|+|+ +.+|++|+ |+.|+||++.+....      ....+. +|...|..++|+|++..++++++   .|
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS---~D  147 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSG---FD  147 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEe---CC
Confidence            58899999999997 78999999 999999999754221      112344 89999999999998776543332   68


Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeee-----eecCCC
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCD-----VSQNAG  147 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  147 (359)
                      +.|++||+.+++.+..+.+...|.+++|+|+|.+++   .|+.|++||+++++.+..+..|.+.+....     +++++.
T Consensus       148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~  227 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN  227 (568)
T ss_pred             CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence            999999999998888887778899999999999888   689999999999999999988887654333     335544


Q ss_pred             ccEEEecCCCC---eeEEEEecCC--eeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC
Q 018248          148 PMVMACPGLLK---GQVRVEDYGT--KKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG  220 (359)
Q Consensus       148 ~~~l~~~g~~d---~~v~~~~~~~--~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~  220 (359)
                        +++++|..+   +.|+||+.+.  .++..+..  +.+.+......++|.++++|+.|+. |++|++..+. +..+...
T Consensus       228 --~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l~~~  303 (568)
T PTZ00420        228 --YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKVNEY  303 (568)
T ss_pred             --EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEeeccc
Confidence              355545433   4799999873  44444332  2233333444556889999999999 9999998764 3344433


Q ss_pred             CCCcceEEEEecCCC
Q 018248          221 AERAEIYSLAFSSNA  235 (359)
Q Consensus       221 ~~~~~i~~~~~s~~~  235 (359)
                      .+..++.+++|.|..
T Consensus       304 ~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        304 KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCCccceEEcccc
Confidence            356788899999964

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-25  Score=173.26  Aligned_cols=282  Identities=14%  Similarity=0.203  Sum_probs=224.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|++.|+.++-......+.+++ |.+.+||.++++.....  +. ||.+.|.++.|++++..++.++    .|++..||.
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~--Y~-GH~GSVNsikfh~s~~L~lTaS----GD~taHIW~  218 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT--YT-GHTGSVNSIKFHNSGLLLLTAS----GDETAHIWK  218 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccceee--ec-ccccceeeEEeccccceEEEcc----CCcchHHHH
Confidence            5899999999888888889999 99999999999877644  33 9999999999999888888777    578888986


Q ss_pred             ------CCCc----------------------------------cEEeeec-cCcceeEEEEecceeEEE---ecCeEEE
Q 018248           83 ------DHEN----------------------------------RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYV  118 (359)
Q Consensus        83 ------~~~~----------------------------------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i  118 (359)
                            +...                                  -++..+. |...|.+..|...++.++   .|.+-.+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence                  1110                                  1223334 666777777877776666   8999999


Q ss_pred             EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEE
Q 018248          119 YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA  196 (359)
Q Consensus       119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~  196 (359)
                      ||+++++.+..+.+|....+-++-+|...  ++++ .+.|.+.++|+.+.  ..+..|++|...|+++.|..+.+ +++|
T Consensus       299 wDVEtge~v~~LtGHd~ELtHcstHptQr--LVvT-sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg  374 (481)
T KOG0300|consen  299 WDVETGEVVNILTGHDSELTHCSTHPTQR--LVVT-SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG  374 (481)
T ss_pred             eeeccCceeccccCcchhccccccCCcce--EEEE-eccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence            99999999999999999888777777654  3444 67899999999875  55778999999999999987765 6799


Q ss_pred             eCCCCeEEEEEcCCCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCC
Q 018248          197 SSKGTLIRVFNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSK  275 (359)
Q Consensus       197 ~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  275 (359)
                      ++|.+ |++||+++.. ++.++..   .++++.++.+..+..|+.--++..|++||+.......                
T Consensus       375 SDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR----------------  434 (481)
T KOG0300|consen  375 SDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR----------------  434 (481)
T ss_pred             CCCce-EEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCcccc----------------
Confidence            99999 9999998764 6777774   4789999999888899988888999999998765211                


Q ss_pred             CCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC--CEEEEEecCCeEEEEEeCC
Q 018248          276 NSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN--NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~  338 (359)
                                    +|+.   .     -+.|...|.+++|..+.  .-|++++-|..+.-|++..
T Consensus       435 --------------lPrt---s-----RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  435 --------------LPRT---S-----RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             --------------CCcc---c-----ccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence                          2221   1     23355678999997654  5689999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=3.3e-25  Score=166.26  Aligned_cols=242  Identities=14%  Similarity=0.133  Sum_probs=191.2

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iw   81 (359)
                      .|.+.|+|++.+-+.+++++|+ |.++++||+++++.+....+    ..+|..+.|+++++.++++....- ..+.|.++
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f  125 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF  125 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence            5899999999999999999999 99999999999999877776    688999999999998887763221 45789999


Q ss_pred             ECC-------CccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce-eeeeEeccCCCceeeeeecCCCcc
Q 018248           82 DDH-------ENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK-LVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        82 d~~-------~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      |++       ..+++..+. +...++.+-|.|-++.++   .+|.|.+||+++++ .+...+.|...++.++++++... 
T Consensus       126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-  204 (327)
T KOG0643|consen  126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-  204 (327)
T ss_pred             EccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-
Confidence            987       345566666 788999999999998887   89999999999874 45555778888999999998865 


Q ss_pred             EEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCC-eEEEEEcCCC------------cEEE
Q 018248          150 VMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGT-LIRVFNTMDG------------SLLQ  215 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-~i~iwd~~~~------------~~~~  215 (359)
                       +++ ++.|.+-++|+... ..++++. -..+|++.+++|....++.|+.... .|.-=+.+.|            +.+.
T Consensus       205 -FiT-~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig  281 (327)
T KOG0643|consen  205 -FIT-GSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG  281 (327)
T ss_pred             -EEe-cccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence             554 77899999977665 4444444 5779999999998777766653221 0221122222            3455


Q ss_pred             EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      .+++  |-++|++++|+|+|+..++|++||.|++..++..
T Consensus       282 rvkG--HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  282 RVKG--HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cccc--cccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            5666  7789999999999999999999999999877653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.3e-25  Score=193.31  Aligned_cols=235  Identities=19%  Similarity=0.283  Sum_probs=196.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.+.|.++++..-+.+|++|+ |.++++||+.+++..  ..+. ||...+.++...  +..+  ++++  .|.+|++|+
T Consensus       247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~--~~~~--~sgs--~D~tVkVW~  317 (537)
T KOG0274|consen  247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTID--PFLL--VSGS--RDNTVKVWD  317 (537)
T ss_pred             CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEcc--CceE--eecc--CCceEEEEe
Confidence            5899999999998888999999 999999999987666  5555 889988877653  2222  3333  699999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      +.++..+..+. |..+|.++..+ ...++.  .|++|++||+.++++++.+.+|...|..+.+... +  .+.+ |+.|+
T Consensus       318 v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~S-gs~D~  392 (537)
T KOG0274|consen  318 VTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N--RLLS-GSLDT  392 (537)
T ss_pred             ccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c--eEEe-eeecc
Confidence            99999999999 99999999998 333343  8999999999999999999999998888766554 2  2444 88899


Q ss_pred             eEEEEecCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          160 QVRVEDYGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       160 ~v~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      .|++|+.+..  ++..+.+|...+..+.+  .+++|++++.|+. |++||..++++++.+... |...|..+++.  ...
T Consensus       393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~  466 (537)
T KOG0274|consen  393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--KEE  466 (537)
T ss_pred             ceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--cce
Confidence            9999998876  88889999998866654  6789999999999 999999999999999864 45788888886  467


Q ss_pred             EEEEcCCCcEEEEEccCCCCC
Q 018248          238 LAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      +++++.||.+++||++++...
T Consensus       467 il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  467 ILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             EEEEecCCeeEEEecccCchh
Confidence            888899999999999998743

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=2e-23  Score=174.27  Aligned_cols=266  Identities=11%  Similarity=0.126  Sum_probs=184.8

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS   96 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~   96 (359)
                      +..+++++ |+.+++||+++++..  ..+. +| ..+..+++++++..+++++.   .++.|++||..+++.+..+....
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~--~~~~-~~-~~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVT--RTFP-VG-QRPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceE--EEEE-CC-CCCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCC
Confidence            35677877 999999999876654  3333 23 33566888888877655443   47999999999998887776444


Q ss_pred             ceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeee-
Q 018248           97 EVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-  171 (359)
Q Consensus        97 ~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~-  171 (359)
                      .+..+.++|++..++    .++.|++||+.+.+.+..+... .....++++|+++.  ++++......+.+|+...... 
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~--l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKI--VVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCE--EEEEecCCCeEEEEeCCCCeEE
Confidence            567889999987654    5789999999888877776533 23466888898875  443222223455566554332 


Q ss_pred             EEeecccccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEEEEeecCC---C--CcceEEEEecCCCCEEEE-EcCC
Q 018248          172 KYITAHASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLLQEMRRGA---E--RAEIYSLAFSSNAQWLAA-SSDK  244 (359)
Q Consensus       172 ~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~~~~~~~~---~--~~~i~~~~~s~~~~~l~~-~~~d  244 (359)
                      .... ....+..++|+|++++|+++ ..++. |++||+++++.+..+....   +  ......++|+|+++++++ .+.+
T Consensus       151 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       151 DNVL-VDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             EEEE-cCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence            2222 33456789999999988655 46888 9999999998777664211   1  112457889999998654 3456


Q ss_pred             CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEE
Q 018248          245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVI  324 (359)
Q Consensus       245 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  324 (359)
                      +.+.+||+++++..                                 +..          .....+..++|+|++++|++
T Consensus       229 ~~i~v~d~~~~~~~---------------------------------~~~----------~~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       229 NRVAVVDAKTYEVL---------------------------------DYL----------LVGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             CeEEEEECCCCcEE---------------------------------EEE----------EeCCCcceEEECCCCCEEEE
Confidence            78999999876511                                 000          01235678999999999988


Q ss_pred             Ee-cCCeEEEEEeCC
Q 018248          325 VG-LDGSYYKCEFDP  338 (359)
Q Consensus       325 ~~-~dg~i~v~~~~~  338 (359)
                      +. .+|.|.+|++..
T Consensus       266 ~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       266 TNGVSNDVSVIDVAA  280 (300)
T ss_pred             EcCCCCeEEEEECCC
Confidence            75 599999999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=7e-26  Score=181.72  Aligned_cols=244  Identities=11%  Similarity=0.100  Sum_probs=189.4

Q ss_pred             CCCCceEEEEEccCCCEE-EEec-CCceEEEEcCCCccee--------eeecccCCCCceeEEEEeccCCEEEEEecCCC
Q 018248            4 PDPITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIM--------RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~   73 (359)
                      .|++.|+.+.+-|....+ |+++ .+.+.|||........        ...+. ||...-..++|.+.....++.++   
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~---  197 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGS---  197 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeecc---
Confidence            588999999999976655 5566 8889999987432221        12344 88886666777776666655554   


Q ss_pred             CCCeEEEEECCCccE-------Eeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcc--cceeeeeEeccCCCcee
Q 018248           74 QSNKVMIWDDHENRY-------LGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFT--DLKLVDQIETVVNPTGL  139 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~--~~~~~~~~~~~~~~~~~  139 (359)
                      .|++|++||+.....       ...+. |...|..++|++-...++    .|+.+.|||++  +.++......|..++.+
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            689999999875432       33344 889999999999654443    89999999998  56677777889999999


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEE--
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLL--  214 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~--  214 (359)
                      ++|+|.+.. +||+ |+.|++|.+|+++.  .++..+.+|...|.++.|+|+. ..||+++.|+. +.+||+..-...  
T Consensus       278 ~~fnp~~~~-ilAT-~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~eq~  354 (422)
T KOG0264|consen  278 VAFNPFNEF-ILAT-GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEEQS  354 (422)
T ss_pred             EEeCCCCCc-eEEe-ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccccccC
Confidence            999999865 4555 88899999999875  6788899999999999999965 58899999999 999998642111  


Q ss_pred             ----------EEeecCCCCcceEEEEecCCCC-EEEEEcCCCcEEEEEccC
Q 018248          215 ----------QEMRRGAERAEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       215 ----------~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~  254 (359)
                                ..|.-+.|...|..+.|+|+.. .|+++++|+.+.||+...
T Consensus       355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                      1133334889999999999876 467889999999999874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.7e-26  Score=190.92  Aligned_cols=235  Identities=16%  Similarity=0.243  Sum_probs=190.7

Q ss_pred             EEEEc-cCCCEEEEec-CCceEEEEcCCCcc----eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248           11 HLALN-QDHGCFATGT-ETGFRVYLSDPYKP----IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus        11 ~~~~s-~~g~~l~~~~-d~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      .+..+ |.+++|.+|+ ||.|++|+......    .+...++ .|..-|..+.+.-+++.++.++    .|-+|++|+..
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~S----sDtTVK~W~~~  103 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISAS----SDTTVKVWNAH  103 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEec----CCceEEEeecc
Confidence            45555 4667799999 99999999864332    2344555 7888888888877788777777    78999999988


Q ss_pred             Cc--cEEeeec-cCcceeEEEE-ecceeEEE---ecCeEEEEEcccce--eeee--------Ee-ccCCCceeeeeecCC
Q 018248           85 EN--RYLGELS-FRSEVKNVRL-RRDRIVVV---LNQKVYVYNFTDLK--LVDQ--------IE-TVVNPTGLCDVSQNA  146 (359)
Q Consensus        85 ~~--~~~~~~~-~~~~v~~~~~-~~~~~~~~---~d~~i~i~d~~~~~--~~~~--------~~-~~~~~~~~~~~~~~~  146 (359)
                      .+  -+...+. |.+.|.|+++ -++...++   .|+.|.+||+.++.  .+..        +. ++...+..++..+.+
T Consensus       104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~  183 (735)
T KOG0308|consen  104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG  183 (735)
T ss_pred             cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence            77  5666777 9999999999 67777777   89999999998762  2222        22 455667777777666


Q ss_pred             CccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                        .++++ |+..+.+++|+... +.+..+++|...|..+..++||+.+++++.||+ |++||+...+++.++..  |...
T Consensus       184 --t~ivs-Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e~  257 (735)
T KOG0308|consen  184 --TIIVS-GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKEG  257 (735)
T ss_pred             --eEEEe-cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccCc
Confidence              34555 77899999988765 667778899999999999999999999999999 99999999999999987  6678


Q ss_pred             eEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |+++..+|+-..+.+|+.||.|..=|+++..
T Consensus       258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             eEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            9999999999999999999999999998853

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.8e-24  Score=187.70  Aligned_cols=273  Identities=14%  Similarity=0.138  Sum_probs=214.2

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCC-cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPY-KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|...-+.++|.|+|++|.+++ |+.|++|+.... +......   -+...+.+++  -..+.++.++    .+++|.+|
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia--~~s~~f~~~s----~~~tv~~y   81 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIA--CYSNHFLTGS----EQNTVLRY   81 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEe--ecccceEEee----ccceEEEe
Confidence            5888899999999999998888 999999998765 3332111   1344444444  4455666666    78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .+..++.-..+. ..-++++++++.+|.+++   .|-.|++.++.+......+.+|..++..+.+.|.++.  ||+ .+-
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f--LAv-ss~  158 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF--LAV-SSC  158 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE--EEE-Eec
Confidence            998887665554 678899999999999888   7889999999999999999999999998888887764  665 446


Q ss_pred             CeeEEEEecCCeeeE-Eeec--------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248          158 KGQVRVEDYGTKKSK-YITA--------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS  228 (359)
Q Consensus       158 d~~v~~~~~~~~~~~-~~~~--------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~  228 (359)
                      ||.|++|+.+...+. .+.+        ....+..++|+|+|..++....|+. |++|+..+++....+....+...+..
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEE
Confidence            999999998864332 2211        1345678999999888888888999 99999999999999887766667999


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248          229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN  308 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      ++|+|+|+|||+++.||.|.|||+++-...                                              .+..
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~----------------------------------------------~~~~  271 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDTHERH----------------------------------------------EFKR  271 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecccchhc----------------------------------------------cccc
Confidence            999999999999999999999999974311                                              1224


Q ss_pred             cEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          309 VQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      .|++++|.|+.+.|-.-...|...+|.
T Consensus       272 ~Vc~~aw~p~~n~it~~~~~g~~~~~~  298 (933)
T KOG1274|consen  272 AVCCEAWKPNANAITLITALGTLGVSP  298 (933)
T ss_pred             eeEEEecCCCCCeeEEEeeccccccCh
Confidence            677888888887777777777666553

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.8e-24  Score=154.93  Aligned_cols=244  Identities=13%  Similarity=0.146  Sum_probs=188.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce---eeeecccCCCCceeEEEEeccC--CEEEEEecCCCCCC
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI---MRRDFDRNPRGGTQLVSMLFRS--NIICLVNSGPHQSN   76 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~d~   76 (359)
                      ..|++.|+|.+|||+|+++|+|+ |+.|++...+.....   ...+|. -|.+.+..++|..++  ...++++++. .|.
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc  163 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDC  163 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-Ccc
Confidence            35899999999999999999999 999998766532211   112232 589999999998554  3445555555 588


Q ss_pred             eEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEecc-------CCCceeeeeecC
Q 018248           77 KVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV-------VNPTGLCDVSQN  145 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~  145 (359)
                      +|.+-|..+|+..+.+. |.+.|.++- +-++-.++   .|.+|+.||++-..++.++...       ...+..+++.|.
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence            99999999999999998 889888764 22444555   8999999999888777776431       234556677676


Q ss_pred             CCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC--cEEEEeecCCC
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG--SLLQEMRRGAE  222 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~--~~~~~~~~~~~  222 (359)
                      +.  +|++ |..|..+.+++.++ +.++.+..|...|.|+.|+|...|+++++.|.. |++-|++..  ..+..+....|
T Consensus       243 gr--ll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~~vv~eh  318 (350)
T KOG0641|consen  243 GR--LLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPIMVVAEH  318 (350)
T ss_pred             cc--eeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCceEEEEec
Confidence            64  4776 88999999966654 788999999999999999999999999999999 999998532  12222222337


Q ss_pred             CcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  319 KDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cCceEEEEecCccceeeeccCcceEEEeccC
Confidence            7888999999998888999999999999764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.5e-24  Score=163.37  Aligned_cols=262  Identities=11%  Similarity=0.155  Sum_probs=196.6

Q ss_pred             EEEEec-CCceEEEEcCCCc------ce----eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248           20 CFATGT-ETGFRVYLSDPYK------PI----MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus        20 ~l~~~~-d~~i~iw~~~~~~------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      .|++|+ ...|.-+++....      ..    ....+. .|.+.+.+++++  +.  ++++++  .|.+|+|||+.+...
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~--~~aSGs--sDetI~IYDm~k~~q   75 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GP--YVASGS--SDETIHIYDMRKRKQ   75 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ce--eEeccC--CCCcEEEEeccchhh
Confidence            466777 7777777765322      11    112233 789999988873  34  444444  689999999999888


Q ss_pred             Eeeec-cCcceeEEEEecce---eEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           89 LGELS-FRSEVKNVRLRRDR---IVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        89 ~~~~~-~~~~v~~~~~~~~~---~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      +..+- |.+.|+++.|.+..   .++.  .||.|.+|+......+..++.|.+.|+.++++|.++- .|..  +.|+.++
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL-ALsV--g~D~~lr  152 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKL-ALSV--GGDQVLR  152 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCce-EEEE--cCCceee
Confidence            88776 99999999998876   4444  9999999999999999999999999999999999873 3333  3599999


Q ss_pred             EEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248          163 VEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      +|++-.........-....+.+.|+|.|.+++.+..++  |-+|.+.+......+..   +..+.++.|- ++..|++|+
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~  226 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG  226 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence            98764332222222233445599999999998888886  89999988877766663   3567777775 567889999


Q ss_pred             CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee--cccCC
Q 018248          243 DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF--GRQNN  320 (359)
Q Consensus       243 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~  320 (359)
                      +|+.|.+||.+...+.                                          ..+..|...|-.+.+  .|++.
T Consensus       227 d~~~i~~~D~ds~~~~------------------------------------------~~~~AH~~RVK~i~~~~~~~~~  264 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPL------------------------------------------TEFLAHENRVKDIASYTNPEHE  264 (362)
T ss_pred             CCceEEEeccCCCccc------------------------------------------eeeecchhheeeeEEEecCCce
Confidence            9999999999985532                                          113345566666664  56788


Q ss_pred             EEEEEecCCeEEEEEeCCC
Q 018248          321 TIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       321 ~l~~~~~dg~i~v~~~~~~  339 (359)
                      +|+++++||.|+||+++.+
T Consensus       265 ~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  265 YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEEeccCceEEEEEcccc
Confidence            9999999999999999876

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=8.1e-25  Score=174.71  Aligned_cols=232  Identities=16%  Similarity=0.288  Sum_probs=186.3

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceee
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLV  127 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~  127 (359)
                      .+..+...+..+.++..+    .|..+.++|...++.+..++ |...|+.+.++|+...+.   .|..|++|........
T Consensus       221 gi~ald~~~s~~~ilTGG----~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGG----EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CeeEEeecCCCCcceecC----CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence            345555555534444444    68999999999999999998 999999999999987766   8999999999777777


Q ss_pred             eeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEE
Q 018248          128 DQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIR  204 (359)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~  204 (359)
                      .....|..+++.+..+|.+++  +.+ .+.|+...+.+.+ +..+.....  ..-.+++.+|+|||..+.+|..|+. |+
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeY--lls-As~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~-vk  372 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEY--LLS-ASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV-VK  372 (506)
T ss_pred             cccccccccceeeeeccCCcE--EEE-ecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-EE
Confidence            778889999999999999987  444 4478988885444 444433332  2345899999999999999999999 99


Q ss_pred             EEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          205 VFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                      |||+.+...+..|.+  |.++|..++|+.+|-+|+++++|+.|++||++.-+..+                         
T Consensus       373 iwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k-------------------------  425 (506)
T KOG0289|consen  373 IWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK-------------------------  425 (506)
T ss_pred             EEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc-------------------------
Confidence            999999999999987  88999999999999999999999999999999866321                         


Q ss_pred             EeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                                       ++.++. -.+.++.|.+.|.+|++++.|=.||++.
T Consensus       426 -----------------t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  426 -----------------TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             -----------------eeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence                             122222 2578899999999999998776666654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-24  Score=175.65  Aligned_cols=273  Identities=12%  Similarity=0.146  Sum_probs=205.8

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEee-eccCcceeEEEEec
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGE-LSFRSEVKNVRLRR  105 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~  105 (359)
                      ..+.+||+.++.......-. +....-....  -.+++++.+.-.   ...+.+|.+........ +-.+++|.+++-+|
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~-~~a~~~sl~~--l~~~yllsaq~~---rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n   91 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGS-YLAQAASLTA--LNNEYLLSAQLK---RPLLHVWEILKKDQVVQYIVLPGPVHALASSN   91 (476)
T ss_pred             cceeEEecCCCceeEEecCc-ccccchhhhh--hchhheeeeccc---CccccccccCchhhhhhhcccccceeeeecCC
Confidence            45999999998766433210 0011111111  123555554443   36899999877655553 33789999999999


Q ss_pred             ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC----------CeeeE
Q 018248          106 DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG----------TKKSK  172 (359)
Q Consensus       106 ~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~----------~~~~~  172 (359)
                      +|.+++   ..+.|++|.+.+|..+..+..|...++++.|+-|+..  +++ |+.||.|.+|...          ..++.
T Consensus        92 ~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~--iiT-gskDg~V~vW~l~~lv~a~~~~~~~p~~  168 (476)
T KOG0646|consen   92 LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH--IIT-GSKDGAVLVWLLTDLVSADNDHSVKPLH  168 (476)
T ss_pred             CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE--EEe-cCCCccEEEEEEEeecccccCCCcccee
Confidence            999998   6799999999999999999999999999999988875  665 7799999999764          35678


Q ss_pred             EeecccccccEEEEccCC--cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          173 YITAHASRIASIAMTLDG--RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       173 ~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      .+..|.-+|+.+...+.|  .+|+|+|.|.+ +++||+..+..+.++.   .+..+.+++.+|-++.+..|+.+|.|.+.
T Consensus       169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  169 IFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGKIFQN  244 (476)
T ss_pred             eeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEcccccEEEecCCcceEEee
Confidence            889999999999988754  48999999999 9999999999998887   45789999999999999999999999998


Q ss_pred             EccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC--cEEEeeecccCCEEEEEecC
Q 018248          251 GLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN--VQYLVGFGRQNNTIVIVGLD  328 (359)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d  328 (359)
                      ++..-.....               +.+       .+.    +......+..+..+.+  .|++++.+-||..|++|+.|
T Consensus       245 ~~~~~~~~~~---------------~v~-------~k~----~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  245 LLFKLSGQSA---------------GVN-------QKG----RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             ehhcCCcccc---------------ccc-------ccc----cccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence            8876542100               000       000    0001112223445555  89999999999999999999


Q ss_pred             CeEEEEEeCC
Q 018248          329 GSYYKCEFDP  338 (359)
Q Consensus       329 g~i~v~~~~~  338 (359)
                      |+|.||++..
T Consensus       299 g~VcvWdi~S  308 (476)
T KOG0646|consen  299 GKVCVWDIYS  308 (476)
T ss_pred             CCEEEEecch
Confidence            9999998865

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.4e-24  Score=165.46  Aligned_cols=274  Identities=14%  Similarity=0.166  Sum_probs=198.2

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      -.|+.||+.|.+||+|. ||.|.|||+.+....  +.+. +|..+|.+++|+.++..++.++    .|..|.+||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS----~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSS----RDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeec----CCceeEEEeccCCC
Confidence            68999999999999999 999999999987643  4454 8999999999999999999888    89999999999999


Q ss_pred             EEeeeccCcceeEEEEecce--eEEE--ecCeEEEEEcccceeeeeE-ec-cCCCc----eeeeeecCCCccEEEecCCC
Q 018248           88 YLGELSFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTDLKLVDQI-ET-VVNPT----GLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        88 ~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~~~~~~~~-~~-~~~~~----~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +++.+.++.+|+...|+|..  +.++  .+..-.+.++..+  .+.+ .. .....    ....+.+.|+  ++.+ |..
T Consensus        99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~--yIit-Gts  173 (405)
T KOG1273|consen   99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGK--YIIT-GTS  173 (405)
T ss_pred             ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCC--EEEE-ecC
Confidence            99999999999999999954  4444  4554555555432  2222 11 11111    1122444454  4665 777


Q ss_pred             CeeEEEEecC-CeeeEEeeccc-ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-------cE--EEEeecCCCCcce
Q 018248          158 KGQVRVEDYG-TKKSKYITAHA-SRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-------SL--LQEMRRGAERAEI  226 (359)
Q Consensus       158 d~~v~~~~~~-~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-------~~--~~~~~~~~~~~~i  226 (359)
                      .|.+.+++.. .+++..++... ..|..+.++..|++|+.-+.|.. |+.|+++.-       +.  .+.+..-.....-
T Consensus       174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            8999986554 46666665544 78899999999999999999999 999998631       11  1112111122345


Q ss_pred             EEEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248          227 YSLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL  305 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (359)
                      .+++||.+|.|++.++. ...++||.-..+.-                                 -+.+.         .
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL---------------------------------VKILh---------G  290 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSL---------------------------------VKILH---------G  290 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcce---------------------------------eeeec---------C
Confidence            67899999999987774 35699999888762                                 12222         1


Q ss_pred             cC-CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          306 PE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       306 ~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      +. .....+.|+|-...|++- +.|.+++|....
T Consensus       291 ~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  291 TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             Cchhheeecccccceeeeeec-cCCceEEEEeec
Confidence            22 345678899987777776 889999998754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.3e-24  Score=164.54  Aligned_cols=228  Identities=17%  Similarity=0.196  Sum_probs=182.1

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|.++|.+++|+.||..+++|+ |+.+++||+.+++...   +. .|.++|..+.|....++-.++.++  .|.+|++|
T Consensus        69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~---v~-~Hd~pvkt~~wv~~~~~~cl~TGS--WDKTlKfW  142 (347)
T KOG0647|consen   69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ---VA-AHDAPVKTCHWVPGMNYQCLVTGS--WDKTLKFW  142 (347)
T ss_pred             hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee---ee-ecccceeEEEEecCCCcceeEecc--cccceeec
Confidence            57899999999999999999999 9999999999875432   22 599999999999888766666655  89999999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceee-eeEe-ccCCCceeeeeecCCCccEEEecCCCC
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLV-DQIE-TVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      |.+...++.++..++.+.++..-..-..++ .++.|.+|+++.+... +.++ ...-.+.++++..+.+...|   |+-.
T Consensus       143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al---GsiE  219 (347)
T KOG0647|consen  143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL---GSIE  219 (347)
T ss_pred             ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe---eeec
Confidence            999999999999999999988766555556 9999999999655322 2221 12334678888888887543   6679


Q ss_pred             eeEEE-EecCC--eeeEEeecccc---------cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248          159 GQVRV-EDYGT--KKSKYITAHAS---------RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI  226 (359)
Q Consensus       159 ~~v~~-~~~~~--~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i  226 (359)
                      |.+.+ +....  +.-..++.|..         .|++++|+|.-..|+|++.||+ ..+||-.....+++.+.  +..+|
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~--~~qpI  296 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET--HPQPI  296 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc--CCCcc
Confidence            99998 44333  44455666652         5788999999889999999999 99999877777777766  78899


Q ss_pred             EEEEecCCCCEEEEEc
Q 018248          227 YSLAFSSNAQWLAASS  242 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~~  242 (359)
                      ++..|+.+|.+++-+.
T Consensus       297 tcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  297 TCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ceeEecCCCCEEEEEe
Confidence            9999999999987653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=4.8e-25  Score=179.70  Aligned_cols=241  Identities=14%  Similarity=0.205  Sum_probs=172.6

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec--cCcceeEEEEecceeEEE---ecCeEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYV  118 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i  118 (359)
                      +|+..|..+++.+.+..++..+    .|..|++||+...    +..+.+.  ....|++++|++.+..++   .....++
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGS----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             CCceEEEEeeecCCCceeeecc----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            6777888888877776666555    7999999997643    2233333  446799999999876555   6778899


Q ss_pred             EEcccceeeee------------EeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEee-----cccc
Q 018248          119 YNFTDLKLVDQ------------IETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYIT-----AHAS  179 (359)
Q Consensus       119 ~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~-----~~~~  179 (359)
                      +|-...+....            -++|...+++.+|+|..+..+|.+  +.||++++|+.+.  ...+.++     +..-
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            99643333222            235666778889999999877764  4899999999875  2233332     3345


Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc--EEEEeecCCCCc--ceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGS--LLQEMRRGAERA--EIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      +++.++|+|||++||+|+.||. |.+|+.....  +...++ ..|..  .|++++||+||++|++-+.|+++++||++..
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk-~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVK-DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             CceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEee-eccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            7899999999999999999999 9999975432  222222 22444  8999999999999999999999999999987


Q ss_pred             CCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec------CC
Q 018248          256 SGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL------DG  329 (359)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg  329 (359)
                      ++.-                        . ...-++.++              .-+.++|||+.+.|++|+.      .|
T Consensus       397 kkpL------------------------~-~~tgL~t~~--------------~~tdc~FSPd~kli~TGtS~~~~~~~g  437 (641)
T KOG0772|consen  397 KKPL------------------------N-VRTGLPTPF--------------PGTDCCFSPDDKLILTGTSAPNGMTAG  437 (641)
T ss_pred             ccch------------------------h-hhcCCCccC--------------CCCccccCCCceEEEecccccCCCCCc
Confidence            6321                        0 000011111              2256899999999999986      46


Q ss_pred             eEEEEE
Q 018248          330 SYYKCE  335 (359)
Q Consensus       330 ~i~v~~  335 (359)
                      ++++|+
T Consensus       438 ~L~f~d  443 (641)
T KOG0772|consen  438 TLFFFD  443 (641)
T ss_pred             eEEEEe
Confidence            677664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=8.4e-24  Score=181.72  Aligned_cols=191  Identities=15%  Similarity=0.162  Sum_probs=152.4

Q ss_pred             ceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE---eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee
Q 018248           97 EVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI---ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK  170 (359)
Q Consensus        97 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~  170 (359)
                      .+++++.++.|++.+   ..|.|-+|++++|-....+   +.|..++..++.  |+.+..+++ ++.+|.+.+|+...+.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~--D~~n~~~vs-a~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV--DGTNRLLVS-AGADGILKFWDFKKKV  526 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe--cCCCceEEE-ccCcceEEEEecCCcc
Confidence            356667777777666   6888999998888777776   456676665555  444445666 5579999999999877


Q ss_pred             eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          171 SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       171 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      +..--.-...+.++..+.....++.+..|-. |+++|..+.+.+++|.+  |...|++++|||||++|++++.|++|++|
T Consensus       527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~w  603 (910)
T KOG1539|consen  527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRTW  603 (910)
T ss_pred             eeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence            5544445677889999988889999999998 99999999999999998  78899999999999999999999999999


Q ss_pred             EccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecC-C
Q 018248          251 GLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLD-G  329 (359)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g  329 (359)
                      |+.++...                                 +.+         .+ ..+...+.|+|+|.+||++..| .
T Consensus       604 Dlpt~~lI---------------------------------D~~---------~v-d~~~~sls~SPngD~LAT~Hvd~~  640 (910)
T KOG1539|consen  604 DLPTGTLI---------------------------------DGL---------LV-DSPCTSLSFSPNGDFLATVHVDQN  640 (910)
T ss_pred             eccCccee---------------------------------eeE---------ec-CCcceeeEECCCCCEEEEEEecCc
Confidence            99998732                                 111         11 2356789999999999999998 5


Q ss_pred             eEEEEEe
Q 018248          330 SYYKCEF  336 (359)
Q Consensus       330 ~i~v~~~  336 (359)
                      -|++|.-
T Consensus       641 gIylWsN  647 (910)
T KOG1539|consen  641 GIYLWSN  647 (910)
T ss_pred             eEEEEEc
Confidence            6999963

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.8e-25  Score=187.29  Aligned_cols=282  Identities=14%  Similarity=0.224  Sum_probs=210.0

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcce--eeeecccCCCC--ceeEEEEe-ccCCEEEEEecCCCCCCeEEE
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPI--MRRDFDRNPRG--GTQLVSML-FRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~--~~~~~~~~h~~--~v~~~~~~-~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +....+|+.+++-..+++++...++||..++....  +...+......  ....+.|. ...+.+++++    ..|.|.+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s----~nG~i~v  114 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS----TNGVISV  114 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec----CCCcEEE
Confidence            45677888999999999999888999988754322  22221100011  11223333 2346777777    6799999


Q ss_pred             EECCC---ccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           81 WDDHE---NRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        81 wd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      ||+..   .+.+..+. |+..+.++.|++....++    .||.|++||++..+...++.+....+..+.|+|..... ++
T Consensus       115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~-F~  193 (839)
T KOG0269|consen  115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK-FA  193 (839)
T ss_pred             EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce-EE
Confidence            99987   56666777 999999999998765444    89999999999888888888888889999999988653 34


Q ss_pred             ecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE--EEEeecCCCCcceEE
Q 018248          153 CPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL--LQEMRRGAERAEIYS  228 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~i~~  228 (359)
                      + +.+.|.+++|+++.  +....+.+|.++|.|+.|+|++.+||||+.|+. |+|||+.+.+.  +.++.   ...++.+
T Consensus       194 s-~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~r  268 (839)
T KOG0269|consen  194 S-IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVGR  268 (839)
T ss_pred             E-ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceeee
Confidence            3 66889999999886  566778899999999999999999999999999 99999876543  34444   3468999


Q ss_pred             EEecCCCCE-EEEEc--CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248          229 LAFSSNAQW-LAASS--DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL  305 (359)
Q Consensus       229 ~~~s~~~~~-l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (359)
                      +.|-|+.++ |++++  .|-.|+|||++.+-                                 +|        ++.+.-
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---------------------------------IP--------~~t~~e  307 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPY---------------------------------IP--------YATFLE  307 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeecccc---------------------------------cc--------ceeeec
Confidence            999998765 56655  57789999998753                                 22        122333


Q ss_pred             cCCcEEEeeecc-cCCEEEEEecCCeEEEEEeCC
Q 018248          306 PENVQYLVGFGR-QNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       306 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      |...++.++|.. |...+.+++.||.|..-.++.
T Consensus       308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             cCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            456778888855 556788888888887655543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.3e-24  Score=171.76  Aligned_cols=233  Identities=17%  Similarity=0.206  Sum_probs=184.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++.|+||++||+|+ |..|.||+.++.+..  ..+. +|.+.|..++|....+.++.++    .|+.|++|+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv--~~~~-ghr~~V~~L~fr~gt~~lys~s----~Drsvkvw~  272 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV--KVFK-GHRGAVSSLAFRKGTSELYSAS----ADRSVKVWS  272 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh--hccc-ccccceeeeeeecCccceeeee----cCCceEEEe
Confidence            4778999999999999999999 999999999987776  4455 9999999999998888888777    799999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +.....+.++- |++.|.++....-++.+.   .|+++++|++... ....+.++...+.+++|--+..   +++ |+.+
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H---fvs-GSdn  347 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH---FVS-GSDN  347 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc---eee-ccCC
Confidence            99888887776 999999999887777666   8999999999433 3334566777788888865543   555 8899


Q ss_pred             eeEEEEecCC-eeeEEee-c-----------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----cEEEEeecCC
Q 018248          159 GQVRVEDYGT-KKSKYIT-A-----------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----SLLQEMRRGA  221 (359)
Q Consensus       159 ~~v~~~~~~~-~~~~~~~-~-----------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----~~~~~~~~~~  221 (359)
                      |.|.+|.... +++.+.. +           +..+|++++..|...++|+|+.+|. |++|-+..+    +++..+.   
T Consensus       348 G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls---  423 (479)
T KOG0299|consen  348 GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS---  423 (479)
T ss_pred             ceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc---
Confidence            9999988764 3333321 1           1238999999999999999999999 999999877    3455554   


Q ss_pred             CCcceEEEEecCCCCEEEEE-cCCCcEEEEEc
Q 018248          222 ERAEIYSLAFSSNAQWLAAS-SDKGTVHVFGL  252 (359)
Q Consensus       222 ~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~  252 (359)
                      -.+.|++++|+++|+.|++| +....+-=|-.
T Consensus       424 ~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  424 LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence            45799999999999976665 33433433433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-22  Score=174.99  Aligned_cols=321  Identities=15%  Similarity=0.154  Sum_probs=222.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCC-CceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR-GGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +.+...|+++.=+|-=..+|.|. +|+|.|+++..++.+  .+|+  |. +.|..++|..+++.+..+++   ..|.+.+
T Consensus       199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil--~sFk--~d~g~VtslSFrtDG~p~las~~---~~G~m~~  271 (910)
T KOG1539|consen  199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL--MSFK--QDWGRVTSLSFRTDGNPLLASGR---SNGDMAF  271 (910)
T ss_pred             cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE--EEEE--ccccceeEEEeccCCCeeEEecc---CCceEEE
Confidence            45778999999999999999999 999999999987776  4443  44 89999999988988776665   3599999


Q ss_pred             EECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEccc--c--eeeeeEeccCCCceeeeeecCCCccEE
Q 018248           81 WDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD--L--KLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        81 wd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      ||++..+.+..+.  |.+.|....|.|....++   .|+.+++|-..+  |  +.++.-.+|..+..++.+.-..... +
T Consensus       272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~-i  350 (910)
T KOG1539|consen  272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF-I  350 (910)
T ss_pred             EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE-E
Confidence            9999988888776  888999999999888887   778777775532  2  3333434555555555544222111 1


Q ss_pred             EecCCC-----------------------------------------------------------------CeeEEEEec
Q 018248          152 ACPGLL-----------------------------------------------------------------KGQVRVEDY  166 (359)
Q Consensus       152 ~~~g~~-----------------------------------------------------------------d~~v~~~~~  166 (359)
                      .+ ...                                                                 +..++.|+.
T Consensus       351 ls-a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~  429 (910)
T KOG1539|consen  351 LS-AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF  429 (910)
T ss_pred             Ee-cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence            11 112                                                                 223333444


Q ss_pred             CCeee-EEeec------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee-cCCCCcceEEEEecCCCCEE
Q 018248          167 GTKKS-KYITA------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR-RGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       167 ~~~~~-~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l  238 (359)
                      +.+.. +..-.      ....+++++.++.|++.+.|+..|. |.+|++++|-....+- ...|.++|++++...-++.+
T Consensus       430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~  508 (910)
T KOG1539|consen  430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL  508 (910)
T ss_pred             cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe-EEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence            43332 11111      2357889999999999999999999 9999999999888883 23388999999999888999


Q ss_pred             EEEcCCCcEEEEEccCCCCCCCCCccccC--CCCCc-cCCCC--CceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          239 AASSDKGTVHVFGLKVDSGSPGTSKLHSA--SEPNL-SSKNS--SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      ++++.+|.+++||.++...........+.  ..... .....  ...-++.++..      ...+-...+..|.+.++.+
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~------~t~kvvR~f~gh~nritd~  582 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV------VTRKVVREFWGHGNRITDM  582 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc------hhhhhhHHhhccccceeee
Confidence            99999999999999987622111000000  00000 00000  00011111110      0112233477788999999


Q ss_pred             eecccCCEEEEEecCCeEEEEEeCCC
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      +|||||+.|++++.|++|++|+++..
T Consensus       583 ~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEEeccCc
Confidence            99999999999999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=6.2e-24  Score=170.64  Aligned_cols=254  Identities=13%  Similarity=0.113  Sum_probs=184.1

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE----------Eeeec-cCcceeEEEEecc--eeEEE--e
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY----------LGELS-FRSEVKNVRLRRD--RIVVV--L  112 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~----------~~~~~-~~~~v~~~~~~~~--~~~~~--~  112 (359)
                      -|.+.|.-+...|....++....   ..+.+.|||..+...          -..+. |...-.+++|++.  +.++.  .
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t---~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKT---SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecC---CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            47777777777765544433322   469999999654211          11333 7777788999885  44454  8


Q ss_pred             cCeEEEEEcccc-------eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC---eeeEEeeccccccc
Q 018248          113 NQKVYVYNFTDL-------KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---KKSKYITAHASRIA  182 (359)
Q Consensus       113 d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---~~~~~~~~~~~~i~  182 (359)
                      |++|.+||+...       .+...+.+|...+..++|++..+.++..  .+.|+.+.||+.+.   ++.....+|.+.|+
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s--v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS--VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee--ecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            999999999532       2345667899999999999988874433  44799999988773   45566789999999


Q ss_pred             EEEEccC-CcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCC
Q 018248          183 SIAMTLD-GRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSP  259 (359)
Q Consensus       183 ~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~  259 (359)
                      |++|+|- +..||+|+.|++ |++||+++. +++..+..  |...|.++.|||.. ..||+++.|+.+.|||+..-....
T Consensus       277 ~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            9999994 558899999999 999999985 46777776  78899999999965 578999999999999998765332


Q ss_pred             CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeC
Q 018248          260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~  337 (359)
                      ..      ...        ..+        .|.      .+..-..|...|....|.|+. -.|+++++|+.+.||++.
T Consensus       354 ~~------eda--------~dg--------ppE------llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  354 SP------EDA--------EDG--------PPE------LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             Ch------hhh--------ccC--------Ccc------eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            10      000        000        011      111123456778999999966 557888889999999876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.3e-23  Score=159.52  Aligned_cols=225  Identities=18%  Similarity=0.238  Sum_probs=178.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..++.+++|.++ ..+++|+ ||.|+.+|++++......    .|..++.++...+..+.++..+    .|++|++||
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig----th~~~i~ci~~~~~~~~vIsgs----WD~~ik~wD  122 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG----THDEGIRCIEYSYEVGCVISGS----WDKTIKFWD  122 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec----cCCCceEEEEeeccCCeEEEcc----cCccEEEEe
Confidence            47899999999985 4566666 999999999987665333    4899999999988777777666    899999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEe--ccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIE--TVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      .........+.....|.++....+..++. .+..+.+||+++.....+..  ...-.+.++++-|++.+  .++ ++-+|
T Consensus       123 ~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~-sSieG  199 (323)
T KOG1036|consen  123 PRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG--YVV-SSIEG  199 (323)
T ss_pred             ccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc--eEE-Eeecc
Confidence            98877777777777999999988777775 99999999998765443222  12335678888897777  444 55799


Q ss_pred             eEEE-EecCC----eeeEEeecccc---------cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          160 QVRV-EDYGT----KKSKYITAHAS---------RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       160 ~v~~-~~~~~----~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                      .|.+ +-...    .....++.|..         +|++++|+|--..||||+.||. |.+||+.+.+.+.++..  .+..
T Consensus       200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~--~~~S  276 (323)
T KOG1036|consen  200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAK--YETS  276 (323)
T ss_pred             eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccC--CCCc
Confidence            9999 33222    23344566642         7999999999889999999999 99999999999988876  5678


Q ss_pred             eEEEEecCCCCEEEEEcC
Q 018248          226 IYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~  243 (359)
                      |.+++|+.||..||.++.
T Consensus       277 I~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  277 ISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEEEeccCCCeEEEEec
Confidence            999999999999999873

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=4.9e-22  Score=161.91  Aligned_cols=316  Identities=15%  Similarity=0.196  Sum_probs=209.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +..+.-|.|++|.++|..+..-++|.|.||+..+.+..  +... .|.+.|.++++.-++..+-   ++  .|..|..||
T Consensus       243 k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~--k~~~-aH~ggv~~L~~lr~GtllS---Gg--KDRki~~Wd  314 (626)
T KOG2106|consen  243 KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS--KQVH-AHDGGVFSLCMLRDGTLLS---GG--KDRKIILWD  314 (626)
T ss_pred             cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE--eEee-ecCCceEEEEEecCccEee---cC--ccceEEecc
Confidence            34457899999999998665545999999998654332  2222 7999999999987665443   44  689999998


Q ss_pred             CCCccEEee------------------------------------------eccCcceeEEEEecceeEEE---ecCeEE
Q 018248           83 DHENRYLGE------------------------------------------LSFRSEVKNVRLRRDRIVVV---LNQKVY  117 (359)
Q Consensus        83 ~~~~~~~~~------------------------------------------~~~~~~v~~~~~~~~~~~~~---~d~~i~  117 (359)
                       ..-+.++.                                          +.|..+...++.+|+...++   .|+.++
T Consensus       315 -~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~  393 (626)
T KOG2106|consen  315 -DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR  393 (626)
T ss_pred             -ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence             21111111                                          11445677778888766555   899999


Q ss_pred             EEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe
Q 018248          118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  197 (359)
                      +|+  ..+++.... -..+..++.|+|.+ .  +|. |...|...+.+.+.+.+..+.....++++++|+|+|.+||.|+
T Consensus       394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~--va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs  466 (626)
T KOG2106|consen  394 LWN--DHKLEWTKI-IEDPAECADFHPSG-V--VAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS  466 (626)
T ss_pred             Ecc--CCceeEEEE-ecCceeEeeccCcc-e--EEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec
Confidence            999  555555443 34567788999988 3  555 7778888885555555555555588999999999999999999


Q ss_pred             CCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCC------CccccCCC-
Q 018248          198 SKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGT------SKLHSASE-  269 (359)
Q Consensus       198 ~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~-  269 (359)
                      .|+. |+||.+... ........ .+.++|+.+.||+|+++|.+-+.|-.|..|.-..-......      .......| 
T Consensus       467 ~d~~-iyiy~Vs~~g~~y~r~~k-~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~  544 (626)
T KOG2106|consen  467 HDNH-IYIYRVSANGRKYSRVGK-CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFE  544 (626)
T ss_pred             CCCe-EEEEEECCCCcEEEEeee-ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEE
Confidence            9999 999998754 44444433 24589999999999999999999999999943332221111      00000000 


Q ss_pred             ---CCccCCCC-----------CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          270 ---PNLSSKNS-----------SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       270 ---~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                         ..++....           +.+.....++.+..-..+....+..+..+.+.+..++|.-+...+++.+.|..|..|+
T Consensus       545 v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  545 VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence               01110000           0001111122111111222234455667778999999998888888888999999998


Q ss_pred             e
Q 018248          336 F  336 (359)
Q Consensus       336 ~  336 (359)
                      +
T Consensus       625 l  625 (626)
T KOG2106|consen  625 L  625 (626)
T ss_pred             e
Confidence            6

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1.7e-23  Score=161.29  Aligned_cols=286  Identities=10%  Similarity=0.119  Sum_probs=196.6

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCc------------ceeeeecccCCCCceeEEEEe-------ccCCEEEE
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYK------------PIMRRDFDRNPRGGTQLVSML-------FRSNIICL   67 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~------------~~~~~~~~~~h~~~v~~~~~~-------~~~~~~~~   67 (359)
                      -...+.|+|||..|++-+ |+.+++|++....            +.......  ....|...+|.       |+.++.+.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccceeee
Confidence            345789999999999999 9999999985210            01111111  13334444444       23344444


Q ss_pred             EecCCCCCCeEEEEECCCccEEeeec---cCcc---eeEEEEecceeEEE--ecCeEEEEEc-ccceeeeeE-------e
Q 018248           68 VNSGPHQSNKVMIWDDHENRYLGELS---FRSE---VKNVRLRRDRIVVV--LNQKVYVYNF-TDLKLVDQI-------E  131 (359)
Q Consensus        68 ~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~~--~d~~i~i~d~-~~~~~~~~~-------~  131 (359)
                      .+    .+.-|++||.-+|+....+.   |..+   ..+++|+|||..+.  ....|+++|+ +.|..-...       .
T Consensus       129 ss----r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  129 SS----RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             cc----ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence            44    68999999999999888876   4444   45899999998777  8889999999 555322221       1


Q ss_pred             ccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248          132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~  210 (359)
                      +..+.+.+++++|.... .+++ |+....+-|+.. ...++..+.+|.+.|+.++|.++|+.|.+|+.....|..||++.
T Consensus       205 gq~giisc~a~sP~~~~-~~a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSK-TLAV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             cccceeeeeeccCCCCc-ceee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            22455677888887654 3565 777888888444 44778888899999999999999999999986433399999986


Q ss_pred             -CcEEEEeecCCC-CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeee
Q 018248          211 -GSLLQEMRRGAE-RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRG  288 (359)
Q Consensus       211 -~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (359)
                       ..++..+.++.. ...-.-+...|++++|++|+.||.|++||++......                             
T Consensus       283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~-----------------------------  333 (406)
T KOG2919|consen  283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV-----------------------------  333 (406)
T ss_pred             ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc-----------------------------
Confidence             456666665322 2222344556899999999999999999999854221                             


Q ss_pred             ecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceE
Q 018248          289 VLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMH  345 (359)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  345 (359)
                                  ..+..+...++.++++|--+.+++++..   ++|..+.+.+|+..
T Consensus       334 ------------sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~dD~ge~~  375 (406)
T KOG2919|consen  334 ------------SVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPKDDNGELE  375 (406)
T ss_pred             ------------cccccccccccceecCcccceeeeccCc---eeecCCCccccccc
Confidence                        0022234677899999987777766554   45666665555543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.7e-23  Score=159.15  Aligned_cols=245  Identities=17%  Similarity=0.278  Sum_probs=175.1

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce--eeeecccCCCCceeEEEEeccC--CEEEEEecCCCCCC
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI--MRRDFDRNPRGGTQLVSMLFRS--NIICLVNSGPHQSN   76 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~d~   76 (359)
                      +..|.+-|+++.|.+-|+++|+|+ |++++|||.+.....  .....+ .|.+.+..+.|.+..  ..++.++    .|+
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS----~Dr   83 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCS----YDR   83 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEe----cCC
Confidence            456888999999999999999999 999999997644433  333444 789999999998755  4455555    799


Q ss_pred             eEEEEECCCc-------c--EEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccce------eeeeEe----
Q 018248           77 KVMIWDDHEN-------R--YLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLK------LVDQIE----  131 (359)
Q Consensus        77 ~i~iwd~~~~-------~--~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~------~~~~~~----  131 (359)
                      ++.||.-...       +  ...++. ....|+++.|.|.  |..++   .||.++||+..+.-      +...++    
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            9999984211       1  122333 6688999999996  45555   99999999974432      222222    


Q ss_pred             ---ccCCCceeeeeecCCC-ccEEEecCCCC-----eeEEEEecC--C---eeeEEeecccccccEEEEccCC----cEE
Q 018248          132 ---TVVNPTGLCDVSQNAG-PMVMACPGLLK-----GQVRVEDYG--T---KKSKYITAHASRIASIAMTLDG----RFV  193 (359)
Q Consensus       132 ---~~~~~~~~~~~~~~~~-~~~l~~~g~~d-----~~v~~~~~~--~---~~~~~~~~~~~~i~~~~~s~~~----~~l  193 (359)
                         .+..+..++.|++..- ..++|. |+.+     +.++||...  +   ..+..+.+|..+|+.++|.|+-    .+|
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence               2334456677776432 234554 5433     367775544  3   2345567999999999999963    479


Q ss_pred             EEEeCCCCeEEEEEcCCC--------------------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          194 ATASSKGTLIRVFNTMDG--------------------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~--------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      |+++.||  |+||.++..                    +.+.++..  |++.|..+.|+-.|..|++.+.||+||+|...
T Consensus       243 AvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  243 AVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            9999998  899998631                    12333433  88999999999999999999999999999876


Q ss_pred             CCC
Q 018248          254 VDS  256 (359)
Q Consensus       254 ~~~  256 (359)
                      -..
T Consensus       319 y~n  321 (361)
T KOG2445|consen  319 YNN  321 (361)
T ss_pred             hhh
Confidence            543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=8.4e-22  Score=160.59  Aligned_cols=276  Identities=11%  Similarity=0.148  Sum_probs=201.7

Q ss_pred             CCceEEEEEccCCCE-EEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGC-FATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~-l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      .+.|....|+|.+.. +++++.+.+.+|+.+.+....++.+-.+++. -..+++.+.++.-++.+.   .+|.|.||+..
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engdviTgD---S~G~i~Iw~~~  275 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGDVITGD---SGGNILIWSKG  275 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCCEEeec---CCceEEEEeCC
Confidence            456788999996655 4666699999999987765544433213333 333444444544444444   46999999987


Q ss_pred             CccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248           85 ENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        85 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      +.+..+... |++.|.+++...+|.++.  .|..|..|| ..-+.++..+.++..-..-.+.+....+++   |...+.|
T Consensus       276 ~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~v---GTtrN~i  351 (626)
T KOG2106|consen  276 TNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILV---GTTRNFI  351 (626)
T ss_pred             CceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEE---eeccceE
Confidence            777666665 999999999999999999  899999999 455555555443332222334454444333   4345555


Q ss_pred             EEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE
Q 018248          162 RVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS  241 (359)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  241 (359)
                      ..=...........+|......++.+|+...+++++.|+. +++|+  ..+++.+..   -..+..++.|+|.| .+|.|
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~G  424 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVG  424 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEe
Confidence            5544555555667789999999999999999999999999 99999  455544443   23578999999999 99999


Q ss_pred             cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE
Q 018248          242 SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT  321 (359)
Q Consensus       242 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  321 (359)
                      +..|...+.|.++....                                           +++....++++++|+|+|.+
T Consensus       425 t~~G~w~V~d~e~~~lv-------------------------------------------~~~~d~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  425 TATGRWFVLDTETQDLV-------------------------------------------TIHTDNEQLSVVRYSPDGAF  461 (626)
T ss_pred             eccceEEEEecccceeE-------------------------------------------EEEecCCceEEEEEcCCCCE
Confidence            99999999999985411                                           12223468899999999999


Q ss_pred             EEEEecCCeEEEEEeCCC
Q 018248          322 IVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       322 l~~~~~dg~i~v~~~~~~  339 (359)
                      ||+|+.|+.|++|.++..
T Consensus       462 lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  462 LAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEEecCCCeEEEEEECCC
Confidence            999999999999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=1.7e-24  Score=176.14  Aligned_cols=235  Identities=11%  Similarity=0.215  Sum_probs=198.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ..+-|.++...|||+.|++|+ -.++.|||+..........+. .-.-....++++++.+..+.+.    .||.|.|||+
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFscc----sdGnI~vwDL  538 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCC----SDGNIAVWDL  538 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeec----cCCcEEEEEc
Confidence            467799999999999999999 889999999876665555553 1123445667777777665555    6899999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      .+...++.++ |.+.+.|+.++++|..+.   .|++|+.||+++++.+.... ....|..+..+|.++.  ++. |.+++
T Consensus       539 hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dW--lav-GMens  614 (705)
T KOG0639|consen  539 HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDW--LAV-GMENS  614 (705)
T ss_pred             ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccc--eee-ecccC
Confidence            9999999999 999999999999998888   89999999999887766543 3455677788888876  666 88899


Q ss_pred             eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          160 QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       160 ~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      .+.+-..++.....+..|..-|.++.|.+-|+++++.+.|.. +..|.+.-|..+.+.+   ..+.|.++.+|.|.++|+
T Consensus       615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIV  690 (705)
T KOG0639|consen  615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIV  690 (705)
T ss_pred             cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEEE
Confidence            999877777777788889999999999999999999999998 9999999999888877   457999999999999999


Q ss_pred             EEcCCCcEEEEEc
Q 018248          240 ASSDKGTVHVFGL  252 (359)
Q Consensus       240 ~~~~dg~i~iw~~  252 (359)
                      ||+.|....||.+
T Consensus       691 TGSGdkkATVYeV  703 (705)
T KOG0639|consen  691 TGSGDKKATVYEV  703 (705)
T ss_pred             ecCCCcceEEEEE
Confidence            9999988888875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=8.3e-24  Score=175.50  Aligned_cols=291  Identities=14%  Similarity=0.137  Sum_probs=213.4

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEec-CCC--------
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS-GPH--------   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~~~--------   73 (359)
                      .|++.|.|++..|.|.+|++|+ ||+++||.+.++..+....+    .+.|.+++|.|.++..+++.. +..        
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            5899999999999999999999 99999999999998877777    678999999988764333221 100        


Q ss_pred             ---------------------CCCeEEEEECCCc-----cEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEc
Q 018248           74 ---------------------QSNKVMIWDDHEN-----RYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNF  121 (359)
Q Consensus        74 ---------------------~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~  121 (359)
                                           .+..+..|.-...     ..-..+.|...|..+.|+..|.+++      ....|.|+++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence                                 2333445542211     1123345888999999999999998      4578999999


Q ss_pred             ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248          122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  200 (359)
                      ...+....|....+.+..+.|+|....+++|+    ...|++|+... ..++.+......|..++.+|.|.-|+.++.|+
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence            76666566666667788899999988766665    56899977654 34455555667899999999999999999999


Q ss_pred             CeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248          201 TLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA  279 (359)
Q Consensus       201 ~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (359)
                      . +..||+.-. ++.+.+..  |...+++++|++.-.++++|+.||++.||.-.--....                   .
T Consensus       630 k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~-------------------q  687 (733)
T KOG0650|consen  630 K-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLL-------------------Q  687 (733)
T ss_pred             e-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhh-------------------c
Confidence            9 999998755 45556655  78899999999999999999999999998654322100                   0


Q ss_pred             eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEE
Q 018248          280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKC  334 (359)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  334 (359)
                      ...+..++.     +..+     .......|..+.|+|....|+++++||+|++|
T Consensus       688 npliVPlK~-----L~gH-----~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  688 NPLIVPLKR-----LRGH-----EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCceEeeee-----ccCc-----eeecccceEeecccCCCceEEecCCCceEEee
Confidence            000001111     1111     11112347788999999999999999999998

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.5e-24  Score=169.44  Aligned_cols=237  Identities=11%  Similarity=0.212  Sum_probs=182.2

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +.|.+.|..|+++. +..|.+|.|++|+.|.++..   ...++.  -...+..+......+..+.++      ..|.|||
T Consensus       106 ~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~til--g~s~~~gIdh~~~~~~FaTcG------e~i~IWD  173 (433)
T KOG0268|consen  106 KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTIL--GKSVYLGIDHHRKNSVFATCG------EQIDIWD  173 (433)
T ss_pred             ecccCceeeEEecc-cceEEecCCcceeeeeccCC---cceeee--ccccccccccccccccccccC------ceeeecc
Confidence            46889999999998 55666666999999998752   223321  123333444433344444333      6899999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .....++..+. ....|.++.|+|....++    .|+.|.+||++++++++.+.... ..+.++|+|...  .++ ++++
T Consensus       174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-RTN~IswnPeaf--nF~-~a~E  249 (433)
T KOG0268|consen  174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-RTNTICWNPEAF--NFV-AANE  249 (433)
T ss_pred             cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-cccceecCcccc--cee-eccc
Confidence            99999999998 678899999999876554    89999999999999888775433 346788999332  233 3779


Q ss_pred             CeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248          158 KGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       158 d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                      |..++.++.+.  .++....+|.+.|.++.|||.|+.+++||.|.+ |+||....+.....+... ....|.++.||.|.
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDS  327 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEEEEeccc
Confidence            99999966654  677788899999999999999999999999999 999999877655444322 23579999999999


Q ss_pred             CEEEEEcCCCcEEEEEccCCCC
Q 018248          236 QWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       236 ~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      +++++|++|+.|++|.-...+.
T Consensus       328 kyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  328 KYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             cEEEecCCCcceeeeecchhhh
Confidence            9999999999999999877654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.2e-25  Score=188.56  Aligned_cols=212  Identities=17%  Similarity=0.286  Sum_probs=181.5

Q ss_pred             CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEe
Q 018248           26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLR  104 (359)
Q Consensus        26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~  104 (359)
                      .-.+++|+...      ..   .|...+.++.+......++  .++  .|..+-+|.+..-..+..+. |..+|.++.|+
T Consensus        13 ~t~Lr~~~~~~------~~---~hsaav~~lk~~~s~r~~~--~Gg--~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~   79 (825)
T KOG0267|consen   13 ATKLRVWDTRE------FV---AHSAAVGCLKIRKSSRSLV--TGG--EDEKVNLWAIGKPNAITSLTGHESPIESLTFD   79 (825)
T ss_pred             eeccccccchh------hh---hhhhhhceeeeeccceeec--cCC--CceeeccccccCCchhheeeccCCcceeeecC
Confidence            55677777652      11   4677777777633333333  333  67889999988777777777 99999999999


Q ss_pred             cceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeeccccc
Q 018248          105 RDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASR  180 (359)
Q Consensus       105 ~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~  180 (359)
                      +...+++   .+|+|++||++..+.++++.+|...+..+.|+|.+.+  .|. |+.|+.+.+|+.+ ..+...+.+|...
T Consensus        80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~--~a~-gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF--FAS-GSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE--ecc-ccccccceehhhhccCceeeecCCcce
Confidence            9988887   8999999999999999999999999999999998875  454 8899999999887 6888899999999


Q ss_pred             ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +..+.|+|+|++++.+++|.. ++|||...|+.+.+|+.  |.+.+.++.|+|..-++++|+.|+++++||+++-+
T Consensus       157 v~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  157 VDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             eEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence            999999999999999999999 99999999999999987  78899999999999999999999999999999754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.2e-21  Score=163.67  Aligned_cols=236  Identities=17%  Similarity=0.217  Sum_probs=171.3

Q ss_pred             CceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            7 ITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ..+.+++|+|+|+.+ +++. ++.|++||..+++..  ..+. .+ ..+..+.++++++.+++.+.   .++.+++||+.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~-~~-~~~~~~~~~~~g~~l~~~~~---~~~~l~~~d~~  103 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP-SG-PDPELFALHPNGKILYIANE---DDNLVTVIDIE  103 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc-CC-CCccEEEECCCCCEEEEEcC---CCCeEEEEECC
Confidence            346789999999977 5566 899999999876554  2332 22 23456778888876655543   46899999999


Q ss_pred             CccEEeeeccCcceeEEEEecceeEEE---ec-CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee
Q 018248           85 ENRYLGELSFRSEVKNVRLRRDRIVVV---LN-QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ  160 (359)
Q Consensus        85 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~  160 (359)
                      +++.+..+.....+.+++|+|++.+++   .+ ..+.+||..+++....+... .....++|++++..  ++.++..++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~--l~~~~~~~~~  180 (300)
T TIGR03866       104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKE--LWVSSEIGGT  180 (300)
T ss_pred             CCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCE--EEEEcCCCCE
Confidence            988888777556678999999998877   23 45778899887776655433 23456888888875  3333556889


Q ss_pred             EEEEecCCe-eeEEeeccc-------ccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          161 VRVEDYGTK-KSKYITAHA-------SRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       161 v~~~~~~~~-~~~~~~~~~-------~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      |++|+.... .+..+..+.       .....++|+|++++++++ +.++. |.+||+++++.+..+..   ...+.+++|
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~---~~~~~~~~~  256 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLV---GQRVWQLAF  256 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEe---CCCcceEEE
Confidence            999887653 334433221       123568899999986554 45667 99999999888766542   347899999


Q ss_pred             cCCCCEEEEE-cCCCcEEEEEccCCC
Q 018248          232 SSNAQWLAAS-SDKGTVHVFGLKVDS  256 (359)
Q Consensus       232 s~~~~~l~~~-~~dg~i~iw~~~~~~  256 (359)
                      +|+|++|+++ ..++.|++||+++++
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            9999999876 468999999999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=9.9e-23  Score=171.81  Aligned_cols=290  Identities=14%  Similarity=0.161  Sum_probs=205.5

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCC----CCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNP----RGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      ..|.+.|+++.|+|.+..|++++ |+++.+|..+....+.....+.|.    ..+-...-|+++.+.++.-+    .-|.
T Consensus       264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g----~~Gg  339 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG----RTGG  339 (764)
T ss_pred             cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec----ccCc
Confidence            47999999999999998888888 999999998865555544443222    22344445555554444444    5699


Q ss_pred             EEEEECCCc-cEEe--eec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc-eeeeeE---eccCCCceeeeeecCC
Q 018248           78 VMIWDDHEN-RYLG--ELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-KLVDQI---ETVVNPTGLCDVSQNA  146 (359)
Q Consensus        78 i~iwd~~~~-~~~~--~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~---~~~~~~~~~~~~~~~~  146 (359)
                      .++|..+.. ....  .+. |-+.|.+++|+|.|.+++   .|.+-+++-.-.. +.-+.+   +.|.....++++-+. 
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence            999983332 2222  223 889999999999999888   7888888765311 111222   335555566665553 


Q ss_pred             CccEEEecCCCCeeEEEEecCC----------------------------------------------------------
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT----------------------------------------------------------  168 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~----------------------------------------------------------  168 (359)
                      +. .+++ |.....+|++....                                                          
T Consensus       419 ~~-~FVS-gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  419 DL-QFVS-GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             Cc-eeee-cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            21 1333 44444444443220                                                          


Q ss_pred             -------------------eeeEEeecccccccEEEEccCCcEEEEEeCCCC----eEEEEEcCCCcEEEEeecCCCCcc
Q 018248          169 -------------------KKSKYITAHASRIASIAMTLDGRFVATASSKGT----LIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       169 -------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                                         ..++.+.+|...|.+++.+|+|+++|+++....    .|++|+..+...++.+..  |.-.
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--HsLT  574 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--HSLT  574 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--cceE
Confidence                               012334578889999999999999999975432    299999999888888887  7789


Q ss_pred             eEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248          226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL  305 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (359)
                      |+.++|||||++|++.+.|.++.+|........                                      ...|+..+.
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~--------------------------------------e~~fa~~k~  616 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD--------------------------------------EFRFACLKA  616 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccch--------------------------------------hhhhccccc
Confidence            999999999999999999999999999654421                                      112444556


Q ss_pred             cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       306 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      |...|..+.|+|++.++++++.|.+|.+|.....
T Consensus       617 HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  617 HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            7778999999999999999999999999998764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.8e-22  Score=166.84  Aligned_cols=281  Identities=12%  Similarity=0.159  Sum_probs=209.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .+.+|.+|||+.+.+.||++. +|.|.||++... ......+.-+....+..++|+. +..++.++    .+|.|.-||+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g----~sg~i~EwDl   97 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAE-GGRLFSSG----LSGSITEWDL   97 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEcc-CCeEEeec----CCceEEEEec
Confidence            468899999999999999999 999999999863 3333444423356688888873 33444444    5799999999


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCC
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .+++.+..+. ..+.|++++.+|.+..++   .||.++.++...++.......  ..+.+-++.|.+++..  ++. |+.
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~~-Gs~  174 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IAG-GSI  174 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EEe-ccc
Confidence            9999999998 789999999999887777   788888888776665544332  3355555666666544  665 889


Q ss_pred             CeeEEEEecCCee-eEEe----ec----ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248          158 KGQVRVEDYGTKK-SKYI----TA----HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS  228 (359)
Q Consensus       158 d~~v~~~~~~~~~-~~~~----~~----~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~  228 (359)
                      ||.|++|+..... +...    ..    ...-|+++.|-.++ .|++|...|. |.+||...+.+++.+..  |.+.|.+
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl~  250 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVLA  250 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhcceeE
Confidence            9999999887533 3211    11    22346777776665 5889999999 99999999999999887  7889999


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248          229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN  308 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      ++..+++.++++++.|+.|.-|...+....                              |.        ......+|..
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------wv--------~~~~r~~h~h  292 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------WV--------INSRRDLHAH  292 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccc------------------------------ee--------eeccccCCcc
Confidence            999999999999999999998888776521                              00        0011334556


Q ss_pred             cEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          309 VQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .+.+++..++  .|++|+.|+.+.+-....
T Consensus       293 dvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  293 DVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             cceeeeeecc--eEEecceeeEEEEccccc
Confidence            6777777776  888888888887765543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.7e-23  Score=175.23  Aligned_cols=306  Identities=9%  Similarity=0.152  Sum_probs=223.9

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|.+.|+.++...+|+.|++++ |-+|++|+.......+...+. .|...|.+++.....+.++ +++|  -|+.|.+|
T Consensus        70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lv-aSgG--LD~~IflW  145 (735)
T KOG0308|consen   70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELV-ASGG--LDRKIFLW  145 (735)
T ss_pred             hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeE-EecC--CCccEEEE
Confidence            46889999999999999999999 999999999865434445555 7999999998843333333 3333  68999999


Q ss_pred             ECCCc--cEEeee----------ccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           82 DDHEN--RYLGEL----------SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        82 d~~~~--~~~~~~----------~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      |+.++  +.+..+          .+...|.+++.++.+..++   ..+.+++||.++.+.+..+.+|...|.++.++.++
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG  225 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence            99977  233322          2557899999999998888   77899999999999999999999999999999999


Q ss_pred             CccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc-EEEEeecCCCCc
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS-LLQEMRRGAERA  224 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~  224 (359)
                      ..  +++ ++.||+|++|+... +++.++..|+..|+++..+|+-..+++|+.||. |..=|+++.. ....++   ...
T Consensus       226 t~--~ls-~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~-i~~Tdl~n~~~~tlick---~da  298 (735)
T KOG0308|consen  226 TR--LLS-ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN-IYRTDLRNPAKSTLICK---EDA  298 (735)
T ss_pred             Ce--Eee-cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc-EEecccCCchhheEeec---CCC
Confidence            87  555 66799999999875 678889999999999999999999999999999 9999999843 444444   345


Q ss_pred             ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      +|..+..+...+-+-+++.|+.|+-|..+-.-..........  +..   ...+......+    -|.          .-
T Consensus       299 Pv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~--~~T---~~~~~~~~~~~----tp~----------~v  359 (735)
T KOG0308|consen  299 PVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDF--FST---DSNNHSCDLTN----TPD----------SV  359 (735)
T ss_pred             chhhhhhccccCCceeeeccccceecCCccccccccCCCCCc--ccc---cCCCccccccC----CCc----------ee
Confidence            788888875555556778899999998876543211100000  000   00000000000    000          11


Q ss_pred             ecC-CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          305 LPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       305 ~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .|. ..+...++-.|.+.+++=...|.+.+|++-.
T Consensus       360 i~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~  394 (735)
T KOG0308|consen  360 IPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA  394 (735)
T ss_pred             ccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence            122 2344566677889999999999999999854

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=167.15  Aligned_cols=238  Identities=17%  Similarity=0.248  Sum_probs=192.3

Q ss_pred             CCceEEEEEccCCC-EEEEec-CCceEEEEcCCCcceeeeecccCCC-CceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            6 PITIHHLALNQDHG-CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR-GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         6 ~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +.+|.+.+|.|+|. .+++++ ...++.||+++.+......+. |+. ..+....++++++++++.+    ..|.|.+..
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G----~~G~I~lLh  331 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSNFIAIAG----NNGHIHLLH  331 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC-CcccchhheeEecCCCCeEEEcc----cCceEEeeh
Confidence            56899999999999 777777 888999999876654433333 343 3456678889999999988    789999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCce--eeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTG--LCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~  157 (359)
                      ..+++.+..++.++.|.++.|+.+++.++   .+|.|.+||++...+++.+... +.+.  .++.++++.  ++|+ |+.
T Consensus       332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~--ylA~-GS~  407 (514)
T KOG2055|consen  332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGS--YLAT-GSD  407 (514)
T ss_pred             hhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCc--eEEe-ccC
Confidence            99999999999999999999999997776   7999999999999888888643 3333  445556555  6887 999


Q ss_pred             CeeEEEEecCC-------eeeEEeecccccccEEEEccCCcEEEEEeC--CCCeEEEEEcCCCcEEEEeecCC-CCcceE
Q 018248          158 KGQVRVEDYGT-------KKSKYITAHASRIASIAMTLDGRFVATASS--KGTLIRVFNTMDGSLLQEMRRGA-ERAEIY  227 (359)
Q Consensus       158 d~~v~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~~i~iwd~~~~~~~~~~~~~~-~~~~i~  227 (359)
                      .|.|.||+.+.       +++..+..-...|++++|+||++.||.+|.  +.. +++-.+.+......++... .-+.|+
T Consensus       408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vt  486 (514)
T KOG2055|consen  408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVT  486 (514)
T ss_pred             cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceE
Confidence            99999988543       556666667788999999999999998874  456 8998888877666665421 235799


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      |++|||.|.+||.|..+|.|.+|.+.
T Consensus       487 c~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  487 CMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEecCCCceEEeecCCCceeeEeec
Confidence            99999999999999999999999875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=176.44  Aligned_cols=243  Identities=16%  Similarity=0.205  Sum_probs=191.4

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc-cEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN-RYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDL  124 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~  124 (359)
                      +|..+...+++.++++.+.+++    .|+.|++|+.... +.-..+. +...|.+++...+..... .+++|.+|.+..+
T Consensus        11 aht~G~t~i~~d~~gefi~tcg----sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCG----SDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEec----CCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence            6888999999999999777777    7899999996655 4444444 677788887765533333 8999999999877


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLI  203 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i  203 (359)
                      +.-..+....-++..++++-+++.  +|. |+.|-.|++ ...+....+.+++|+++|.++.|+|++++||+.+.||. |
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~--iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-v  162 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKM--IAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-V  162 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcE--EEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-E
Confidence            665555555567788999888875  665 778888998 66777888899999999999999999999999999999 9


Q ss_pred             EEEEcCCCcEEEEeecCC------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCC
Q 018248          204 RVFNTMDGSLLQEMRRGA------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNS  277 (359)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (359)
                      ++||+.++.+...+..-.      ....+..++|+|+|..++..+.|+.|++|+....+..-                  
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f------------------  224 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF------------------  224 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe------------------
Confidence            999999988776654311      13456789999998888888999999999999876321                  


Q ss_pred             CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          278 SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                            .    +.            -......+..+.|+|.|++||+++.||.|.||+++.
T Consensus       225 ------~----Lr------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  225 ------K----LR------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ------e----ec------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                  0    00            011123378899999999999999999999999984

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=9.4e-23  Score=157.09  Aligned_cols=245  Identities=14%  Similarity=0.211  Sum_probs=193.3

Q ss_pred             eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCe
Q 018248           40 IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQK  115 (359)
Q Consensus        40 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~  115 (359)
                      .+.+.+. ||..+|.-++.......+..++    .|.+.+||.+++++++..+. |.+.|+++.|++.+.+++   .|++
T Consensus       139 ~lvre~~-GHkDGiW~Vaa~~tqpi~gtAS----ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  139 RLVRELE-GHKDGIWHVAADSTQPICGTAS----ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             eehhhhc-ccccceeeehhhcCCcceeecc----cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence            3445565 9999999888766556555555    78999999999999999998 999999999999998888   8889


Q ss_pred             EEEEEc------ccc----------------------------------eeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248          116 VYVYNF------TDL----------------------------------KLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus       116 i~i~d~------~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      -.||..      ...                                  .++..+.+|...+.++.|-..++.  +++ +
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q--~vT-a  290 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ--MVT-A  290 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce--eee-e
Confidence            999862      110                                  134455666676777777767766  443 6


Q ss_pred             CCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecC
Q 018248          156 LLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       156 ~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      +.|.+..+|+.. +..+..+.+|....+.++-+|..+++++++.|.+ .++||.+.. ..+..|.+  |...|+++.|..
T Consensus       291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFReaI~sV~VFQG--HtdtVTS~vF~~  367 (481)
T KOG0300|consen  291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREAIQSVAVFQG--HTDTVTSVVFNT  367 (481)
T ss_pred             eccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhhcceeeeecc--cccceeEEEEec
Confidence            689999997765 5778889999999999999999999999999999 999999843 34566776  778999999986


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      +. .+++|++|.+|+|||+++....                                         +++++. ..+++.+
T Consensus       368 dd-~vVSgSDDrTvKvWdLrNMRsp-----------------------------------------lATIRt-dS~~NRv  404 (481)
T KOG0300|consen  368 DD-RVVSGSDDRTVKVWDLRNMRSP-----------------------------------------LATIRT-DSPANRV  404 (481)
T ss_pred             CC-ceeecCCCceEEEeeeccccCc-----------------------------------------ceeeec-CCcccee
Confidence            54 6789999999999999986621                                         112222 2367888


Q ss_pred             eecccCCEEEEEecCCeEEEEEeCC
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      +.+..++.|+.--++..|++|++.-
T Consensus       405 avs~g~~iIAiPhDNRqvRlfDlnG  429 (481)
T KOG0300|consen  405 AVSKGHPIIAIPHDNRQVRLFDLNG  429 (481)
T ss_pred             EeecCCceEEeccCCceEEEEecCC
Confidence            8888888999988999999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.6e-22  Score=152.80  Aligned_cols=200  Identities=15%  Similarity=0.215  Sum_probs=153.1

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE--eeec---cCcceeEEEEecceeEEE----ecCeEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL--GELS---FRSEVKNVRLRRDRIVVV----LNQKVYV  118 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~~~----~d~~i~i  118 (359)
                      ||.+.|+.++|+.+++.++.++    .|+.|++|+++.....  +.++   .-+..+.+.|.||-.-++    ...++++
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            9999999999999999999999    7899999998763211  1111   223667899999976555    7889999


Q ss_pred             EEccc---ceeeeeE-e-----c-cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc
Q 018248          119 YNFTD---LKLVDQI-E-----T-VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL  188 (359)
Q Consensus       119 ~d~~~---~~~~~~~-~-----~-~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~  188 (359)
                      |.+..   |.....+ .     - ....+..+.+--.+...++++ ++.|..|.+|+..++.+..+......-+..+.||
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ecCCCcEEEEecCCceeeeeccccccccceeeCC
Confidence            98732   2211111 0     0 112334445555556666776 6789999999999999999998888889999999


Q ss_pred             CCcEEEEEeCCCCeEEEEEcC---CC-----cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          189 DGRFVATASSKGTLIRVFNTM---DG-----SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       189 ~~~~l~~~~~dg~~i~iwd~~---~~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      +|+++++++.... |++|.+-   .|     ..+.++++  |.+.|..++||++.+.+++.+.||+++|||++-.
T Consensus       239 ~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  239 DGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             CCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            9999999998888 9999862   23     23445665  8899999999999999999999999999998753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=163.37  Aligned_cols=231  Identities=12%  Similarity=0.121  Sum_probs=184.3

Q ss_pred             CEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cC
Q 018248           19 GCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FR   95 (359)
Q Consensus        19 ~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~   95 (359)
                      .+++++.  ...+.+|.+...........   -.+++.++.-++.+.+++..+    ..+.|++|.+.+|..+..+. |-
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~----i~g~lYlWelssG~LL~v~~aHY  123 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGT----ISGNLYLWELSSGILLNVLSAHY  123 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcc---cccceeeeecCCCceEEEeec----ccCcEEEEEeccccHHHHHHhhc
Confidence            3566666  45688998875443331222   267888888888777766554    46999999999999999888 99


Q ss_pred             cceeEEEEecceeEEE---ecCeEEEEEcc---------cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248           96 SEVKNVRLRRDRIVVV---LNQKVYVYNFT---------DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV  163 (359)
Q Consensus        96 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~  163 (359)
                      ..|+++.|+.|+.+++   .||.|.+|.+.         +-++++.+..|.-++..+.+.+.+....+++ .+.|.++++
T Consensus       124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k~  202 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIKL  202 (476)
T ss_pred             cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEEE
Confidence            9999999999999988   89999999873         2456778888888888888888766556666 668999999


Q ss_pred             EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----------------cEEEEeecCCCCcceE
Q 018248          164 EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----------------SLLQEMRRGAERAEIY  227 (359)
Q Consensus       164 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----------------~~~~~~~~~~~~~~i~  227 (359)
                      |+.....+..-......+.+++++|-++.+++|+.+|. |.+.++...                ..+..+.++.....|+
T Consensus       203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             EEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence            99988666555556788999999999999999999999 988876432                2345566644445999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      |++++-||..|++|+.||.|+|||+.+.+..
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            9999999999999999999999999987754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=2.1e-22  Score=169.87  Aligned_cols=232  Identities=15%  Similarity=0.216  Sum_probs=188.6

Q ss_pred             CCCceEE-EEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            5 DPITIHH-LALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         5 h~~~v~~-~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      |.+-|.+ ++|-+ ++-.+++|+ |..|.+|........  ..+. ||...|.+++...++. +  ++++  .|.++++|
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~--iSgS--WD~TakvW  127 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-L--ISGS--WDSTAKVW  127 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-e--Eecc--cccceEEe
Confidence            4455555 77765 555688888 999999999876665  4455 8999998887654444 3  3333  79999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      -  .+++...+. |+..|+++..-|++.++.  .|.+|++|.  .++.++++.+|...|..+++-++..   +++ ++.|
T Consensus       128 ~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~---flS-csND  199 (745)
T KOG0301|consen  128 R--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH---FLS-CSND  199 (745)
T ss_pred             c--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC---eEe-ecCC
Confidence            6  456666677 999999999999998777  999999998  5889999999999999999988765   444 5589


Q ss_pred             eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248          159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  238 (359)
                      |.|++|+.++..+..+.+|+.-+.+++..+++..++++++|++ ++||+..  ++.+.+..  ....|+++.+-++|.. 
T Consensus       200 g~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~NgDI-  273 (745)
T KOG0301|consen  200 GSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNGDI-  273 (745)
T ss_pred             ceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCCCE-
Confidence            9999999999999999999999999998888899999999999 9999865  77777763  2348999999888865 


Q ss_pred             EEEcCCCcEEEEEccCCCCC
Q 018248          239 AASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~~~  258 (359)
                      ++|+.||.||||-....+..
T Consensus       274 vvg~SDG~VrVfT~~k~R~A  293 (745)
T KOG0301|consen  274 VVGGSDGRVRVFTVDKDRKA  293 (745)
T ss_pred             EEeccCceEEEEEecccccC
Confidence            56788999999998865543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.1e-21  Score=148.87  Aligned_cols=271  Identities=12%  Similarity=0.154  Sum_probs=192.1

Q ss_pred             ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec-cCcceeEEEEec--ceeEEE---ec
Q 018248           44 DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS-FRSEVKNVRLRR--DRIVVV---LN  113 (359)
Q Consensus        44 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~~~---~d  113 (359)
                      .+..+|.+-+.++.|.+.+..++.++    .|++|+|||....    .+....+ |.+.|..+.|.+  -|+.++   .|
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCS----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeecc----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence            34458888899999999999999988    7999999996443    3444455 999999999965  377777   89


Q ss_pred             CeEEEEEcc---------cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-ee------eEEe---
Q 018248          114 QKVYVYNFT---------DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KK------SKYI---  174 (359)
Q Consensus       114 ~~i~i~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~------~~~~---  174 (359)
                      +++.||.-.         .-....++......+..+.|+|...++.+|+ .+.||.++|+..-. ..      ...+   
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhc
Confidence            999999852         1123455666777889999999999888888 66799999966432 11      1111   


Q ss_pred             ----ecccccccEEEEccC---CcEEEEEeCC-----CCeEEEEEcCCCc----EEEEeecCCCCcceEEEEecCCC---
Q 018248          175 ----TAHASRIASIAMTLD---GRFVATASSK-----GTLIRVFNTMDGS----LLQEMRRGAERAEIYSLAFSSNA---  235 (359)
Q Consensus       175 ----~~~~~~i~~~~~s~~---~~~l~~~~~d-----g~~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~---  235 (359)
                          ..+..+..|+.|+|.   ..+||.|+.+     +. ++||....+.    .+.++..  |..+|++++|.|+-   
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRS  238 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCc
Confidence                135667889999974   4588888876     35 8888764432    3445554  78899999999963   


Q ss_pred             -CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          236 -QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       236 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                       .+||+++.|| |+||+++.....-..+....    +      .....+.            ...+..+..|.+.|..+.
T Consensus       239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~----~------~~~~~l~------------v~~vs~~~~H~~~VWrv~  295 (361)
T KOG2445|consen  239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLA----P------DLMTDLP------------VEKVSELDDHNGEVWRVR  295 (361)
T ss_pred             eeeEEEeecCc-EEEEEEeeccchhhhhcccC----C------CCccccc------------eEEeeeccCCCCceEEEE
Confidence             4799999999 99999986442110000000    0      0000010            011223556778999999


Q ss_pred             ecccCCEEEEEecCCeEEEEEeCCCCCCceE
Q 018248          315 FGRQNNTIVIVGLDGSYYKCEFDPMKGGEMH  345 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  345 (359)
                      |.-.|..|++.|.||.|++|+....+.-.|.
T Consensus       296 wNmtGtiLsStGdDG~VRLWkany~n~~kC~  326 (361)
T KOG2445|consen  296 WNMTGTILSSTGDDGCVRLWKANYNNLWKCT  326 (361)
T ss_pred             EeeeeeEEeecCCCceeeehhhhhhhhheee
Confidence            9999999999999999999998776555553

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=6.2e-23  Score=157.46  Aligned_cols=240  Identities=9%  Similarity=0.112  Sum_probs=187.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|.++|+++.|+|....|++|+ |++|++||...... ...+.|  ....+|.++++.|.++++++..    .-.++++|
T Consensus       170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPsGefllvgT----dHp~~rlY  243 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPSGEFLLVGT----DHPTLRLY  243 (430)
T ss_pred             hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--hccceeeeEeecCCCceEEEec----CCCceeEE
Confidence            3789999999999999999999 99999999874322 222233  2467899999999999988777    56899999


Q ss_pred             ECCCccEEeeec----cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec-cC-CCceeeeeecCCCccEEE
Q 018248           82 DDHENRYLGELS----FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET-VV-NPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        82 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~  152 (359)
                      |+++.++...-.    |.+.|+++.+++.+.+.+   .||.|++||--+++++.++.. |. ..+....|..+++  ++.
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k--yiL  321 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK--YIL  321 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe--EEe
Confidence            999998876653    889999999999998877   899999999988899888854 32 3345556666665  477


Q ss_pred             ecCCCCeeEEEEecCC-eeeEEeecc-----cccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          153 CPGLLKGQVRVEDYGT-KKSKYITAH-----ASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~-~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                      ++| .|..+++|.... +++..+.+-     ..--+...|+....|++.-.+ .+. +.-||.++...+..+..+ |++.
T Consensus       322 sSG-~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~s-lcsWdaRtadr~~l~slg-Hn~a  398 (430)
T KOG0640|consen  322 SSG-KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNS-LCSWDARTADRVALLSLG-HNGA  398 (430)
T ss_pred             ecC-CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCc-eeeccccchhhhhhcccC-CCCC
Confidence            745 699999998764 666666543     112344567777777766554 345 999999999887776655 8899


Q ss_pred             eEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          226 IYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      +..+.-||.+.-+++++.|..+++|--+.
T Consensus       399 ~R~i~HSP~~p~FmTcsdD~raRFWyrr~  427 (430)
T KOG0640|consen  399 VRWIVHSPVEPAFMTCSDDFRARFWYRRV  427 (430)
T ss_pred             ceEEEeCCCCCceeeecccceeeeeeecc
Confidence            99999999999999999999999997653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=6.5e-23  Score=161.14  Aligned_cols=206  Identities=15%  Similarity=0.212  Sum_probs=158.5

Q ss_pred             cCcceeEEEEecce--eEEE---ecCeEEEEEccc----------------ceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           94 FRSEVKNVRLRRDR--IVVV---LNQKVYVYNFTD----------------LKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        94 ~~~~v~~~~~~~~~--~~~~---~d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      |.+.++-+...+-+  .+.+   ..|.|+||++..                .+++.++.+|...-..++|+|...+. ++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~-Ll  228 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR-LL  228 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc-cc
Confidence            45555556555543  2333   789999999832                24567778888888889999965543 44


Q ss_pred             ecCCCCeeEEEEecCCee----eEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE
Q 018248          153 CPGLLKGQVRVEDYGTKK----SKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY  227 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~  227 (359)
                      + |.--+.|++|......    ...+.+|+..|..++|||..+ .+++|+-||+ |+|||++.+.....+....|.+.|+
T Consensus       229 s-GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  229 S-GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             c-CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence            3 6556788888766522    334677999999999999654 8899999999 9999999985433333344889999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE  307 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                      -+.|+.+-.+||+|++||+++|||+++-+                                       .....+.++.|.
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~---------------------------------------~~~pVA~fk~Hk  347 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFK---------------------------------------SGQPVATFKYHK  347 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhcc---------------------------------------CCCcceeEEecc
Confidence            99999988899999999999999999855                                       224566788899


Q ss_pred             CcEEEeeeccc-CCEEEEEecCCeEEEEEeCCCCC
Q 018248          308 NVQYLVGFGRQ-NNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       308 ~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                      .+|+++.|+|. ...|+++++|..|.+|++..+..
T Consensus       348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             CCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            99999999994 57889999999999999977644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=1.3e-21  Score=151.35  Aligned_cols=286  Identities=16%  Similarity=0.205  Sum_probs=205.3

Q ss_pred             CCCCCceEEEEEcc-----CCCEEEEecCCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCC--EEEEEecCCC
Q 018248            3 QPDPITIHHLALNQ-----DHGCFATGTETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSN--IICLVNSGPH   73 (359)
Q Consensus         3 ~~h~~~v~~~~~s~-----~g~~l~~~~d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~   73 (359)
                      ..|+.+|..++|++     +-..+|+++.+.+.+|+.....  ..+.......|......++|+++.+  ..+++.+|  
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G--  112 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG--  112 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec--
Confidence            45788999999995     3356777778889999987433  2222222223667777788887653  22333333  


Q ss_pred             CCCeEEEEECCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeE---eccCCCceeeeeecC
Q 018248           74 QSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQI---ETVVNPTGLCDVSQN  145 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~  145 (359)
                      .-|.|+|.|+.++++...+. |...|+.+.++|+.. +++   .|..|++|++++..++..+   .+|...+-.+.|+++
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            45999999999999999988 999999999999873 333   8999999999999998887   568888888999998


Q ss_pred             CCccEEEecCCCCeeEEEEecCCeee-----------------------E------EeecccccccEEEEccCCcEEEEE
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGTKKS-----------------------K------YITAHASRIASIAMTLDGRFVATA  196 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~~~~-----------------------~------~~~~~~~~i~~~~~s~~~~~l~~~  196 (359)
                      ++.  +++ ++.|..+++|..+.+..                       .      +-.-|...|.|+.|-  |.++++-
T Consensus       193 gd~--i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  193 GDR--IAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             CCe--eec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence            885  777 55799999999873110                       0      112366667777663  5788888


Q ss_pred             eCCCCeEEEEEc-CCCc-------------EEEEeecCCCCcceEEE--EecCCCCEEEEEcCCCcEEEEEccCCCCCCC
Q 018248          197 SSKGTLIRVFNT-MDGS-------------LLQEMRRGAERAEIYSL--AFSSNAQWLAASSDKGTVHVFGLKVDSGSPG  260 (359)
Q Consensus       197 ~~dg~~i~iwd~-~~~~-------------~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  260 (359)
                      +-++. |..|.. +-++             .+.++..  ....|+-+  +|.|-+++||.|...|.|.+||++..++.. 
T Consensus       268 scena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~-  343 (385)
T KOG1034|consen  268 SCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK-  343 (385)
T ss_pred             ccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc-
Confidence            88888 999986 2222             2233333  23455555  455678899999999999999999877431 


Q ss_pred             CCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          261 TSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                                                   .+....        ......|...+|+.|+..|+..++||.|.-|+.
T Consensus       344 -----------------------------~ttl~~--------s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  344 -----------------------------CTTLTH--------SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             -----------------------------CceEEe--------ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence                                         000111        112356788999999999999999998888864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.2e-21  Score=161.73  Aligned_cols=239  Identities=15%  Similarity=0.219  Sum_probs=190.4

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEee-e--ccCcceeEEEEecceeEEE--ecCeEEEEEcccc
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGE-L--SFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDL  124 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~  124 (359)
                      ..+|.+++++...+.+++.-    .+|.|.+|++..+-.... +  .....|.+++|.+.++++.  .+|.|.-||+.++
T Consensus        25 Ps~I~slA~s~kS~~lAvsR----t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSR----TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             ccceEEEEEeccCCceeeec----cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence            56788888888888877766    789999999988643332 2  2557899999998888877  8999999999999


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE---EeecccccccEEEEccCCcEEEEEeCCCC
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK---YITAHASRIASIAMTLDGRFVATASSKGT  201 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  201 (359)
                      ++...+....+.++.++.+|.++.  ++. |++||.++........+.   .+...++.+.+++|+|++..|++|+.||.
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~--l~I-gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~  177 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTI--LAI-GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV  177 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccce--EEe-ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence            999999999999999999998875  554 778996665555554433   23445689999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeec-----CC-CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCC
Q 018248          202 LIRVFNTMDGSLLQEMRR-----GA-ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSK  275 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~-----~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  275 (359)
                       |++||..++..++....     .. .+.-|+++.|-.++ .|++|...|+|.+||-..+....                
T Consensus       178 -Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq----------------  239 (691)
T KOG2048|consen  178 -IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ----------------  239 (691)
T ss_pred             -EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh----------------
Confidence             99999999987763221     11 23467888887554 78899999999999999887221                


Q ss_pred             CCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          276 NSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                                .++.+...|.+++.++++++++++|.|+.+..|...+.
T Consensus       240 --------------------------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  240 --------------------------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             --------------------------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence                                      13445677899999999999999999999999988764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=7.9e-22  Score=155.12  Aligned_cols=202  Identities=15%  Similarity=0.215  Sum_probs=158.7

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC----------------ccEEeeec-cCcceeEEEEec--cee
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE----------------NRYLGELS-FRSEVKNVRLRR--DRI  108 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~----------------~~~~~~~~-~~~~v~~~~~~~--~~~  108 (359)
                      +|.+.+.-+...+-++..+.++.+  ..|.|.||++..                .+++.++. |...=..++|+|  .|.
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~asws--e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWS--ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccceeeecccCCcceeeeec--ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            567777777777666666666665  579999999642                24556666 778888999999  344


Q ss_pred             EEE--ecCeEEEEEccccee---eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeeccccc
Q 018248          109 VVV--LNQKVYVYNFTDLKL---VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASR  180 (359)
Q Consensus       109 ~~~--~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~  180 (359)
                      ++.  .-+.|++|...++.-   ...+.+|...|.-++|+|..+.+ ++ +++-||.|+||+.+..   .....++|.+.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~v-fa-ScS~DgsIrIWDiRs~~~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGV-FA-SCSCDGSIRIWDIRSGPKKAAVSTKAHNSD  304 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCce-EE-eeecCceEEEEEecCCCccceeEeeccCCc
Confidence            444  557899999877642   22345688888999999998873 33 3678999999998875   34445899999


Q ss_pred             ccEEEEccCCcEEEEEeCCCCeEEEEEcCC---CcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCC
Q 018248          181 IASIAMTLDGRFVATASSKGTLIRVFNTMD---GSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |+.|.|+..-.+||+|+.||. ++|||+++   ++++.+|+.  |..+|+++.|+|. ...|++++.|.+|.|||+....
T Consensus       305 VNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             eeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            999999998889999999999 99999986   567888887  8899999999985 4578888899999999998654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.3e-23  Score=178.00  Aligned_cols=229  Identities=13%  Similarity=0.203  Sum_probs=198.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.|+..-..++.+++|+ |-.+.+|.+.....+.  .+. +|..+|.++.+.+....++..+    .+|+|++||
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--S~~-~hespIeSl~f~~~E~Llaags----asgtiK~wD   98 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--SLT-GHESPIESLTFDTSERLLAAGS----ASGTIKVWD   98 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--eee-ccCCcceeeecCcchhhhcccc----cCCceeeee
Confidence            3677788888877888999999 8888899987544443  344 8999999999988777766665    689999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      ++.++.++++. |...+.++.|+|-+.+.+   .|..+++||++...+.+.+.+|...+.++.|+|++..  ++. |.+|
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~--v~~-g~ed  175 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW--VAS-GGED  175 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCce--eec-cCCc
Confidence            99999999998 999999999999999997   8999999999988899999999999999999999875  666 6679


Q ss_pred             eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          159 GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       159 ~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      ..++||+.+ ++....|..|.+.+.++.|+|..-++++|+.|++ +++||+++.+.+.....  ....|.+.+|+|++..
T Consensus       176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~  252 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKI  252 (825)
T ss_pred             ceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCCcee
Confidence            999998875 4667788999999999999999999999999999 99999999998887775  4678999999999999


Q ss_pred             EEEEcCCC
Q 018248          238 LAASSDKG  245 (359)
Q Consensus       238 l~~~~~dg  245 (359)
                      +++|....
T Consensus       253 ~~~G~q~s  260 (825)
T KOG0267|consen  253 VLSGEQIS  260 (825)
T ss_pred             eecCchhh
Confidence            98876554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.3e-21  Score=157.56  Aligned_cols=245  Identities=13%  Similarity=0.063  Sum_probs=180.1

Q ss_pred             CCCCceEEEEEccCCC--EEEEec-CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDHG--CFATGT-ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .+..+|++++|+|...  ++|+|. .|.|-+||+.+.+.  .-...+. .|.++|..+.|+|.....++.+.   .||+|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssS---yDGti  259 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSS---YDGTI  259 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeec---cCcee
Confidence            4678999999999654  677888 89999999952221  1112232 78999999999987654444333   79999


Q ss_pred             EEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEccccee-eeeEeccCCCceeeeeecCCCccEE
Q 018248           79 MIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL-VDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      +.-|++++.....+.   ....+.++.|+.+...++   .=|...+||+++... ...+..|...|..++++|-... ++
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~-~l  338 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW-FL  338 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch-he
Confidence            999998874433333   334566777877655444   345889999977654 5666778888999999998876 34


Q ss_pred             EecCCCCeeEEEEecCC---e--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC----CCcEEEEeecCCC
Q 018248          152 ACPGLLKGQVRVEDYGT---K--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM----DGSLLQEMRRGAE  222 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~---~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~----~~~~~~~~~~~~~  222 (359)
                      |+ ++.|++.+||+.+.   +  ++.....|...|.+..|||.+-.|+|.+.|.. |+|||..    ...++.++. |.+
T Consensus       339 aT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  339 AT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             ee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccceee-ccC
Confidence            54 67899999999864   2  23455679999999999998888999999999 9999973    334444444 111


Q ss_pred             C--c--ceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          223 R--A--EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       223 ~--~--~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .  .  ......|.|+..++++|..-..|-|+|-+.++
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            1  1  34567899999999999988889999988776

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.5e-22  Score=172.27  Aligned_cols=203  Identities=20%  Similarity=0.238  Sum_probs=159.5

Q ss_pred             eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEec-ceeEEE---ecCeEEE
Q 018248           43 RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYV  118 (359)
Q Consensus        43 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i  118 (359)
                      ..+. ||.+.|..++|+-+ ++++.++    .|.+|++|++...+++..|.|.+-|+|++|+| |.++++   .|+.|+|
T Consensus       363 ~ef~-GHt~DILDlSWSKn-~fLLSSS----MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  363 CEFK-GHTADILDLSWSKN-NFLLSSS----MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRL  436 (712)
T ss_pred             hhhh-ccchhheecccccC-CeeEecc----ccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEE
Confidence            3444 99999887776532 3444444    79999999999999999999999999999999 455655   8999999


Q ss_pred             EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE---eecc------cccccEEEEccC
Q 018248          119 YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY---ITAH------ASRIASIAMTLD  189 (359)
Q Consensus       119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~---~~~~------~~~i~~~~~s~~  189 (359)
                      |++...+.+.-... ..-|+.+++.|+|++.++   |+.+|.+++++..+..+..   +..|      ...|+.+.|.|.
T Consensus       437 WsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~  512 (712)
T KOG0283|consen  437 WSISDKKVVDWNDL-RDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG  512 (712)
T ss_pred             eecCcCeeEeehhh-hhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence            99977776655544 467899999999886333   7789999998877643322   1111      227999999975


Q ss_pred             Cc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          190 GR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       190 ~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .. .+++.+.|.. |+|||.++.+++..|++......-....|+.||++|+++++|..|+||++....
T Consensus       513 ~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  513 DPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             CCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            44 5667778888 999999999999999876555566788999999999999999999999985544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.4e-22  Score=150.31  Aligned_cols=203  Identities=16%  Similarity=0.153  Sum_probs=161.4

Q ss_pred             cCcceeEEEEecceeEEE---ecCeEEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC
Q 018248           94 FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG  167 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~  167 (359)
                      |++.|.++...--|+.++   .|++|+|+..+..   +.+.++.+|.+++.-++|..-.-+.+||+ ++.||.|.||...
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS-csYDgkVIiWke~   88 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILAS-CSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeE-eecCceEEEEecC
Confidence            778888888877788887   9999999999543   57888999999999999987555566776 7899999999987


Q ss_pred             Ce---eeEEeecccccccEEEEccC--CcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCC---C---
Q 018248          168 TK---KSKYITAHASRIASIAMTLD--GRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSN---A---  235 (359)
Q Consensus       168 ~~---~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~---~---  235 (359)
                      +.   .......|...|++++|.|.  |-.|++++.||. |.|.+.++. .-........|+-.|++++|.|-   |   
T Consensus        89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~-vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK-VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCc-EEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            74   34456789999999999996  558999999999 999988654 22211111237789999999985   4   


Q ss_pred             --------CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248          236 --------QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE  307 (359)
Q Consensus       236 --------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                              +.|++|+.|..|+||+..+++-.                                     .+   .+++.|.
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-------------------------------------~e---~~l~~H~  207 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-------------------------------------LE---RTLEGHK  207 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchh-------------------------------------hh---hhhhhcc
Confidence                    57999999999999999986411                                     01   1156678


Q ss_pred             CcEEEeeecccC----CEEEEEecCCeEEEEEeCC
Q 018248          308 NVQYLVGFGRQN----NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       308 ~~v~~~~~s~~~----~~l~~~~~dg~i~v~~~~~  338 (359)
                      +.|+.+||.|.-    .+|++++.||++.||..+.
T Consensus       208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             hhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence            899999999964    5799999999999998874

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-21  Score=159.58  Aligned_cols=239  Identities=14%  Similarity=0.140  Sum_probs=180.1

Q ss_pred             CCCceEEEEEccCCCEEEEe-c-CCceEEEEcCCC--cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            5 DPITIHHLALNQDHGCFATG-T-ETGFRVYLSDPY--KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~-~-d~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .+..+.++.|+....+++.. + |..+++|.-...  +........   ...-.|++..  ...+..+++|  ..+.|+|
T Consensus        33 ~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~---gd~~~Cv~~~--s~S~y~~sgG--~~~~Vki  105 (673)
T KOG4378|consen   33 AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT---GDNAFCVACA--SQSLYEISGG--QSGCVKI  105 (673)
T ss_pred             CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccc---cchHHHHhhh--hcceeeeccC--cCceeee
Confidence            34459999999876533322 2 888999986632  222222221   1222333222  2225555665  4699999


Q ss_pred             EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC-CceeeeeecCCCccEEEecC
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN-PTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ||++...+.+.++ |...|+++.++-...+++   ..|.|.|..+.+++....+....+ .+..+.+++..+.  +....
T Consensus       106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~--lL~~a  183 (673)
T KOG4378|consen  106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF--LLSIA  183 (673)
T ss_pred             hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce--eeEee
Confidence            9999777777777 999999999999999998   788999999999988888876533 4557889988765  33335


Q ss_pred             CCCeeEEEEecCCeee--EEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          156 LLKGQVRVEDYGTKKS--KYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                      +.+|.|.+|+.++...  .....|..+...++|+|.. .+|++.+.|.. |.+||++..+....+..   ..+...++|+
T Consensus       184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~y---~~Plstvaf~  259 (673)
T KOG4378|consen  184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLTY---SHPLSTVAFS  259 (673)
T ss_pred             ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceeee---cCCcceeeec
Confidence            6899999999988432  3347899999999999955 57889999999 99999998877777763   3589999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCC
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++|.+|+.|+..|.|..||++..+
T Consensus       260 ~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  260 ECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             CCceEEEeecCCceEEEEecccCC
Confidence            999999999999999999999876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=1.8e-21  Score=164.01  Aligned_cols=273  Identities=11%  Similarity=0.134  Sum_probs=202.5

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ...|+.++|-|||..|+.+.+..+.+||.+.+...  +++. ||.+.|.+++++.++..++..+    .|..|.+|. ..
T Consensus        12 ~hci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~----aDK~VI~W~-~k   83 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGS----ADKSVIIWT-SK   83 (1081)
T ss_pred             ccchheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCC----CceeEEEec-cc
Confidence            34899999999999999999999999999987666  6666 9999999999998888776555    689999998 44


Q ss_pred             ccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248           86 NRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV  163 (359)
Q Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~  163 (359)
                      -+-+..+.|.+.|.|+.|+|-...++  .=...-+|....... ...+ ....+.+++|..+|  .+++. |..+|+|.+
T Consensus        84 lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDG--qylal-G~~nGTIsi  158 (1081)
T KOG1538|consen   84 LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDG--QYLAL-GMFNGTISI  158 (1081)
T ss_pred             ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH-Hhhh-hheeEEEeeecCCC--cEEEE-eccCceEEe
Confidence            45556677999999999999887777  555667787643322 1111 12233445555555  45776 778999999


Q ss_pred             EecCCeeeEEee---cccccccEEEEccCC-----cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248          164 EDYGTKKSKYIT---AHASRIASIAMTLDG-----RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       164 ~~~~~~~~~~~~---~~~~~i~~~~~s~~~-----~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                      -+..+++...+.   +.+.+|.+++|+|..     ..+++.....+ +.+|.+ +|+.+..-+.  -.-...|+.+-++|
T Consensus       159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNG  234 (1081)
T ss_pred             ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCC
Confidence            766665544443   467899999999964     36778888887 888876 4555542222  12345789999999


Q ss_pred             CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee
Q 018248          236 QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF  315 (359)
Q Consensus       236 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  315 (359)
                      .++..|+.|+.+++|--+.-.                          +..                 ..-...+|++++.
T Consensus       235 Ey~LiGGsdk~L~~fTR~Gvr--------------------------LGT-----------------vg~~D~WIWtV~~  271 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLFTRDGVR--------------------------LGT-----------------VGEQDSWIWTVQA  271 (1081)
T ss_pred             cEEEEccCCCceEEEeecCeE--------------------------Eee-----------------ccccceeEEEEEE
Confidence            999999999999998655422                          000                 0001357899999


Q ss_pred             cccCCEEEEEecCCeEEEEEeCC
Q 018248          316 GRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       316 s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .|++++++.|+.||+|..|++-.
T Consensus       272 ~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  272 KPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ccCCceEEEEEccCeeehhhhHH
Confidence            99999999999999999998754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.8e-21  Score=156.22  Aligned_cols=235  Identities=13%  Similarity=0.146  Sum_probs=170.0

Q ss_pred             CCCEEEEec-CCceEEEEcCCCcceee-----------------eec-ccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248           17 DHGCFATGT-ETGFRVYLSDPYKPIMR-----------------RDF-DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~-----------------~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      .|+++|.|+ |..|.|||++-....+.                 +.. ..+|+..|..++|...-..++ ++++  .|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVL-aSgs--aD~T  267 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVL-ASGS--ADKT  267 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeE-EecC--CCce
Confidence            367999999 99999999862111100                 000 126777777766654444333 3434  6999


Q ss_pred             EEEEECCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           78 VMIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      |++||+.++++...+. |..+|.++.|+|... +++   .|++|.+.|.+........-...+.+..++|.|.....+++
T Consensus       268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence            9999999999999999 899999999999754 444   89999999997432222222234567889999988875554


Q ss_pred             ecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248          153 CPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSL  229 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  229 (359)
                        +..||.|+-.+.+.  +++.++++|.++|.++++++.-. ++++++.|+. |++|++..............-+...|+
T Consensus       348 --~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  348 --STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLHCF  424 (463)
T ss_pred             --ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccceeec
Confidence              56899999955543  78999999999999999998654 7889999999 999998755443222211122346677


Q ss_pred             EecCCCC-EEEEEcCCCcEEEEEccCCCC
Q 018248          230 AFSSNAQ-WLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       230 ~~s~~~~-~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ++.|+-. .|+.|+..+.++|||+.+..+
T Consensus       425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ccCCCcceEEEecCccceEEEeecccChh
Confidence            7888654 577788888899999988764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=5.4e-22  Score=166.22  Aligned_cols=114  Identities=11%  Similarity=0.112  Sum_probs=93.2

Q ss_pred             CCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcc-ee---eeecccCC-CCceeEEEEeccCCEEEEEecCCCCCC
Q 018248            4 PDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKP-IM---RRDFDRNP-RGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus         4 ~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~-~~---~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      .|.+.|+.+.|+| +..+||+|+ |..|+||.+..+-. .+   ...+  || .-.+.++.+++..+.++.++    .-|
T Consensus        77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~--g~~~~~vE~l~fHpTaDgil~s~----a~g  150 (1012)
T KOG1445|consen   77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDV--GGGNVIVECLRFHPTADGILASG----AHG  150 (1012)
T ss_pred             cccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceee--cCCceEEEEeecccCcCceEEec----cCc
Confidence            5889999999999 556789999 99999999973322 11   1222  33 34577888988888888777    459


Q ss_pred             eEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248           77 KVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD  123 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~  123 (359)
                      .+++||+.+++.+.++. |.+.|.++.|+.||.+++   .|..|+|||.+.
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            99999999999999998 999999999999999998   899999999753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=2.5e-20  Score=142.26  Aligned_cols=205  Identities=13%  Similarity=0.199  Sum_probs=159.8

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----------EEe--eec----cCcceeEEEEecc--eeE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----------YLG--ELS----FRSEVKNVRLRRD--RIV  109 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----------~~~--~~~----~~~~v~~~~~~~~--~~~  109 (359)
                      .|.+.|..+.+.+......+.++   .||.|.+||++...          .+.  ..+    |...|.++.|-|-  |.+
T Consensus        41 ~HgGsvNsL~id~tegrymlSGg---adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGG---ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             cCCCccceeeeccccceEEeecC---CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            68999999998876665555444   68999999987532          111  111    6678999999884  444


Q ss_pred             EE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEE
Q 018248          110 VV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAM  186 (359)
Q Consensus       110 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~  186 (359)
                      ..  .|.++++||..+.+....++. ++.+...+++|-...-.|+++|..+-.|++ +...+.....+.+|.+.|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            44  899999999999988888765 455777888886653334444888999999 66777888999999999999999


Q ss_pred             ccCCc-EEEEEeCCCCeEEEEEcCCC-cEEEEee------------cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          187 TLDGR-FVATASSKGTLIRVFNTMDG-SLLQEMR------------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       187 s~~~~-~l~~~~~dg~~i~iwd~~~~-~~~~~~~------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      +|... .|++|+.||. |++||++.. .+...+.            ...|.+.++.++|+.|+.++++++.|..+++|+.
T Consensus       197 sp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            99877 5789999999 999999754 2332222            2236788999999999999999999999999999


Q ss_pred             cCCCC
Q 018248          253 KVDSG  257 (359)
Q Consensus       253 ~~~~~  257 (359)
                      .+++.
T Consensus       276 ~~G~n  280 (397)
T KOG4283|consen  276 ESGRN  280 (397)
T ss_pred             ccCcc
Confidence            99874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=4.7e-21  Score=160.43  Aligned_cols=281  Identities=10%  Similarity=0.095  Sum_probs=190.3

Q ss_pred             EEEEEcc---CCCEEEEec-CCceEEEEcCCCcce-eee--ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248           10 HHLALNQ---DHGCFATGT-ETGFRVYLSDPYKPI-MRR--DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus        10 ~~~~~s~---~g~~l~~~~-d~~i~iw~~~~~~~~-~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .+..|++   ....|+.+. ||.|.++|....... ..+  .....|...|..+.|.+....++.++    .|.++++||
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas----GDsT~r~Wd  128 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS----GDSTIRPWD  128 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc----CCceeeeee
Confidence            4466665   234678888 999999998743222 111  11137999999999999555555555    479999999


Q ss_pred             CCCccEEee--e-ccCcceeEEEEecceeEEE----ecCeEEEEEccccee---------------------------ee
Q 018248           83 DHENRYLGE--L-SFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKL---------------------------VD  128 (359)
Q Consensus        83 ~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~---------------------------~~  128 (359)
                      +++.+++..  + .|...|.+++|.|....++    .||.|.|||++....                           +.
T Consensus       129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            999988776  3 4999999999999876655    899999999853220                           00


Q ss_pred             eEeccCCCcee---eeeecCCCccEEEecCCCCeeEEEEecCCee-------e--EEeecc---cccccEEEEccCCcEE
Q 018248          129 QIETVVNPTGL---CDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-------S--KYITAH---ASRIASIAMTLDGRFV  193 (359)
Q Consensus       129 ~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-------~--~~~~~~---~~~i~~~~~s~~~~~l  193 (359)
                      ....+...+..   +.+..|..  .||++|..|+.|+||+++...       .  ..+..|   .-.+.++.....|.+|
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             ccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence            00111112222   23334443  477767779999999987522       1  112223   3356778888888999


Q ss_pred             EEEeCCCCeEEEEEcCCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCC
Q 018248          194 ATASSKGTLIRVFNTMDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPN  271 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  271 (359)
                      .+.+.|+. |++|++.+..  ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+..+            
T Consensus       287 ~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~------------  353 (720)
T KOG0321|consen  287 FASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP------------  353 (720)
T ss_pred             EEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh------------
Confidence            88888999 9999997643  34444432222222334578999999999999999999999977432            


Q ss_pred             ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCC
Q 018248          272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~  338 (359)
                                                   ..+..|.-.|+.++|.|.. .-++++++|-.+.+|++..
T Consensus       354 -----------------------------~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  354 -----------------------------ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             -----------------------------hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence                                         0022234467889997743 4567779999999999954

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.3e-21  Score=167.18  Aligned_cols=237  Identities=12%  Similarity=0.186  Sum_probs=172.7

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----EEeeec----cCcceeEEEEec-ceeEEE---ecCeEEE
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----YLGELS----FRSEVKNVRLRR-DRIVVV---LNQKVYV  118 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~----~~~~v~~~~~~~-~~~~~~---~d~~i~i  118 (359)
                      ....+++...+.+.++.++     ...+++|.+....    +...++    ....+.++.|+. +.++++   ..|.|.+
T Consensus        40 ~~~nAIs~nr~~~qiv~AG-----rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~v  114 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAG-----RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISV  114 (839)
T ss_pred             cccceEeecCCcceeEEec-----ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEE
Confidence            4445566666667777666     3567777665432    222212    123455677764 245555   8999999


Q ss_pred             EEccc---ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEcc-CCcEE
Q 018248          119 YNFTD---LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTL-DGRFV  193 (359)
Q Consensus       119 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l  193 (359)
                      ||+..   .+.+..+..|...+..+.|++.... +|+ +|+.||.|++|+.+. +...++.+....|..++|+| .+..+
T Consensus       115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-ili-SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILI-SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             EecCccccchhhhHhhhhccceeeeeeccCCcc-EEE-ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE
Confidence            99965   5666778889999999999988776 333 499999999988776 45566777888999999998 46688


Q ss_pred             EEEeCCCCeEEEEEcCCCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCc
Q 018248          194 ATASSKGTLIRVFNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNL  272 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  272 (359)
                      +++.+.|. +.+||++... +...+..  |.++|.++.|+|++.+||||+.|++|+||++...+..+             
T Consensus       193 ~s~~dsG~-lqlWDlRqp~r~~~k~~A--H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~-------------  256 (839)
T KOG0269|consen  193 ASIHDSGY-LQLWDLRQPDRCEKKLTA--HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP-------------  256 (839)
T ss_pred             EEecCCce-EEEeeccCchhHHHHhhc--ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc-------------
Confidence            89999998 9999998754 4445555  89999999999999999999999999999999766331             


Q ss_pred             cCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE-EEEEec--CCeEEEEEeCC
Q 018248          273 SSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT-IVIVGL--DGSYYKCEFDP  338 (359)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~--dg~i~v~~~~~  338 (359)
                             ..           ...          ...++..+.|-|+.++ |++++.  |-.|+||++..
T Consensus       257 -------~~-----------tIn----------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  257 -------KH-----------TIN----------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             -------ee-----------EEe----------ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence                   00           000          1146788999998755 444443  88999999864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=7.2e-21  Score=161.55  Aligned_cols=238  Identities=14%  Similarity=0.198  Sum_probs=181.2

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEEC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ...|.+++.||+|++||+|. -|.++||++...+.....+   +|..+|.++.+++.. ...++++++  .|.-|.++|+
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e---AHesEilcLeyS~p~~~~kLLASas--rdRlIHV~Dv  533 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME---AHESEILCLEYSFPVLTNKLLASAS--RDRLIHVYDV  533 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee---cccceeEEEeecCchhhhHhhhhcc--CCceEEEEec
Confidence            46799999999999999999 9999999999766654444   799999999988643 223344444  6899999998


Q ss_pred             CCc-cEEeeec-cCcceeEEEEecce---eEEE--ecCeEEEEEcccceeeeeEec-----cCCCceeeeeecCCCccEE
Q 018248           84 HEN-RYLGELS-FRSEVKNVRLRRDR---IVVV--LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        84 ~~~-~~~~~~~-~~~~v~~~~~~~~~---~~~~--~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l  151 (359)
                      ... .+++++. |...|+++.|.-+|   +.+.  .|..|..--.+.......+..     .......+++.|..+.  +
T Consensus       534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~--v  611 (1080)
T KOG1408|consen  534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL--V  611 (1080)
T ss_pred             ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce--E
Confidence            765 5666776 89999999998766   3333  566554332221111111111     1233455666666654  5


Q ss_pred             EecCCCCeeEEEEec-CCeeeEEee---cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE
Q 018248          152 ACPGLLKGQVRVEDY-GTKKSKYIT---AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY  227 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~-~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~  227 (359)
                      ++ ++.|..|+|++. .++..+.|+   .|.+..-.+...|.|.|||+.+.|.+ +.++|..+|+++.++.+  |...|+
T Consensus       612 ~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--HsE~VT  687 (1080)
T KOG1408|consen  612 VT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--HSEAVT  687 (1080)
T ss_pred             EE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--cchhee
Confidence            54 558999999655 456777775   46677889999999999999999999 99999999999999988  778999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .+.|.+|.+.|++.+.||.|.||.+..
T Consensus       688 G~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  688 GVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeecccchhheeecCCceEEEEECch
Confidence            999999999999999999999999865

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.3e-20  Score=156.80  Aligned_cols=240  Identities=14%  Similarity=0.147  Sum_probs=181.5

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeE--EE--ecCeEEEEEccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIV--VV--LNQKVYVYNFTD  123 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~d~~i~i~d~~~  123 (359)
                      ||.+.|.+++..+.+.+++..+    .||+|+||.+.+|.++..+...+.|.+++|+|.+..  ++  .+..+.+.+..-
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGs----dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGS----DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecC----CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            9999999999998888777665    799999999999999999999999999999997532  22  333344433211


Q ss_pred             ce-------------------------------------eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec
Q 018248          124 LK-------------------------------------LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY  166 (359)
Q Consensus       124 ~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~  166 (359)
                      |.                                     -+...-.+...+..+.|+..|+++..++..+....|.|..+
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            10                                     01122235556677778777777554443334456666555


Q ss_pred             CCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC
Q 018248          167 GTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG  245 (359)
Q Consensus       167 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  245 (359)
                      ... ....|....+.|.++.|+|...+|++++...  |+|||+...+.++.+..  ....|.+++.+|.|.-|+.++.|+
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeEEEecCCC
Confidence            443 3334556678899999999999998887764  99999988877777765  346899999999999999999999


Q ss_pred             cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEE
Q 018248          246 TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIV  325 (359)
Q Consensus       246 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  325 (359)
                      .+..||+.-...                                         .+.+++.|...++.++|++.=..+++|
T Consensus       630 k~~WfDldlssk-----------------------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  630 KMCWFDLDLSSK-----------------------------------------PYKTLRLHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             eeEEEEcccCcc-----------------------------------------hhHHhhhhhhhhhhhhhccccceeeee
Confidence            999999987652                                         233466777889999999999999999


Q ss_pred             ecCCeEEEEEe
Q 018248          326 GLDGSYYKCEF  336 (359)
Q Consensus       326 ~~dg~i~v~~~  336 (359)
                      +.||.+.||.-
T Consensus       669 sdDgtv~Vfhg  679 (733)
T KOG0650|consen  669 SDDGTVIVFHG  679 (733)
T ss_pred             cCCCcEEEEee
Confidence            99999999863

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.8e-20  Score=152.74  Aligned_cols=264  Identities=9%  Similarity=0.129  Sum_probs=181.8

Q ss_pred             EEEecCCceEEEEcCCCcceeeeecccCCC--CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec--c
Q 018248           21 FATGTETGFRVYLSDPYKPIMRRDFDRNPR--GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS--F   94 (359)
Q Consensus        21 l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~--~   94 (359)
                      .++.+...+++||....+......   .|.  ..+..+.|.... .+++++.+  .|..+++|. +.|+  .+..+.  .
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~---~~t~~pg~~s~~w~~~n-~lvvas~~--gdk~~~~~~-K~g~~~~Vp~~~k~~   78 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYV---HQTAEPGDFSFNWQRRN-FLVVASMA--GDKVMRIKE-KDGKTPEVPRVRKLT   78 (673)
T ss_pred             eeeccCCceEEeecccccCccccc---cCCCCCcceeeeccccc-eEEEeecC--CceeEEEec-ccCCCCccceeeccc
Confidence            334446678999987544332111   122  234555554333 35555544  589999997 4443  111111  2


Q ss_pred             CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-Cee
Q 018248           95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKK  170 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~  170 (359)
                      ...-.|++......+++   ..+.|+|||++...+.+.++.|...|.++.+.....+  +|+ ++..|.|.|-... +..
T Consensus        79 gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey--iAs-vs~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   79 GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY--IAS-VSDGGDIIIHGTKTKQK  155 (673)
T ss_pred             cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce--eEE-eccCCcEEEEecccCcc
Confidence            23445555555556766   7889999999876677778889988888888776654  776 6678888884444 333


Q ss_pred             eEEeecc-cccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcE
Q 018248          171 SKYITAH-ASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTV  247 (359)
Q Consensus       171 ~~~~~~~-~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i  247 (359)
                      ...+... ...+.-+.|+|..+ +|.+++.+|. |.+||+....++..+.. .|.++...++|+|. ..+|++.+.|..|
T Consensus       156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             ccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceE
Confidence            4444433 34566899999877 5567888998 99999988777777653 38889999999995 4578899999999


Q ss_pred             EEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec
Q 018248          248 HVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL  327 (359)
Q Consensus       248 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  327 (359)
                      .+||........                                 .+.       +   ..+...++|+++|.+|++|..
T Consensus       234 ~~yD~~s~~s~~---------------------------------~l~-------y---~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  234 NIYDIRSQASTD---------------------------------RLT-------Y---SHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             EEeecccccccc---------------------------------eee-------e---cCCcceeeecCCceEEEeecC
Confidence            999999765211                                 000       0   124578999999999999999


Q ss_pred             CCeEEEEEeCCC
Q 018248          328 DGSYYKCEFDPM  339 (359)
Q Consensus       328 dg~i~v~~~~~~  339 (359)
                      .|.|+.|++...
T Consensus       271 ~G~~i~YD~R~~  282 (673)
T KOG4378|consen  271 KGELIAYDMRST  282 (673)
T ss_pred             CceEEEEecccC
Confidence            999999998754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=155.08  Aligned_cols=260  Identities=10%  Similarity=0.121  Sum_probs=187.6

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEE-Eec-------cCCEEEEEecCCCCC
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVS-MLF-------RSNIICLVNSGPHQS   75 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~-~~~-------~~~~~~~~~~~~~~d   75 (359)
                      .|...|.|+.|+.+...+.+++|..+.+|.--+.+......+.   ..-+.... .-+       ..+.+++++    .|
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~s----~D   84 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLICS----ND   84 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCC---cccCCccccccccccCCCCCcceEEEEc----CC
Confidence            4677888999999999998888777766654322222111111   11111100 000       123455555    68


Q ss_pred             CeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      |.+.+.+ +.++....+. |.+.+.+-.|+|+|.-++   .||.|++|.- +|-...++.....++.+++|.|+.+.++.
T Consensus        85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   85 GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVF  162 (737)
T ss_pred             ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEE
Confidence            9999998 7777777777 999999999999998776   9999999994 56555555556778999999999887433


Q ss_pred             EecCCCCeeEEEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          152 ACPGLLKGQVRVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                       +   ..+.+.+-.. ....+...++|.+-|.++.|+|...++++|++|-. .++||. .|..+..-..  |.-+|++++
T Consensus       163 -c---~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~~--~ey~ITSva  234 (737)
T KOG1524|consen  163 -C---QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSAA--EEYAITSVA  234 (737)
T ss_pred             -e---cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCCh--hccceeeee
Confidence             3   3457777333 33456678899999999999999999999999999 999995 5666655544  677999999


Q ss_pred             ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248          231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ  310 (359)
Q Consensus       231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (359)
                      |.|+ +.++.++.. ++|   ++++.                                                  .|.|
T Consensus       235 ~npd-~~~~v~S~n-t~R---~~~p~--------------------------------------------------~GSi  259 (737)
T KOG1524|consen  235 FNPE-KDYLLWSYN-TAR---FSSPR--------------------------------------------------VGSI  259 (737)
T ss_pred             eccc-cceeeeeee-eee---ecCCC--------------------------------------------------ccce
Confidence            9999 555555533 344   22221                                                  2577


Q ss_pred             EEeeecccCCEEEEEecCCeEEEEE
Q 018248          311 YLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       311 ~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      ..++||+||.+++.|+..|.+.+-.
T Consensus       260 fnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  260 FNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             EEEEEcCCCceeeccccCceEEEee
Confidence            8899999999999999999876643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=8.4e-20  Score=139.02  Aligned_cols=302  Identities=14%  Similarity=0.184  Sum_probs=199.5

Q ss_pred             CCCEEEEec-----CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEE-EEEecCCCCC----CeEEEEECCC
Q 018248           17 DHGCFATGT-----ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNII-CLVNSGPHQS----NKVMIWDDHE   85 (359)
Q Consensus        17 ~g~~l~~~~-----d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~~~~~~~d----~~i~iwd~~~   85 (359)
                      |.-.|.+|+     |+.|.+.++++... +....|. .|.+.|..++-+|....+ +.+.... .|    ..+.||.+..
T Consensus        25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~-h~agEvw~las~P~d~~ilaT~yn~~-s~s~vl~~aaiw~ipe  102 (370)
T KOG1007|consen   25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF-HHAGEVWDLASSPFDQRILATVYNDT-SDSGVLTGAAIWQIPE  102 (370)
T ss_pred             cceEEEEeccccCCcceeEEEEecCccchhhhhhhh-cCCcceehhhcCCCCCceEEEEEecc-CCCcceeeEEEEeccc
Confidence            334556664     57788888875443 3333443 678899998888766544 4333211 12    3568998764


Q ss_pred             c---------cEEeeec--cCcceeEEEEecceeEEE--ecCeEEEEEccccee-eeeEec-----cCCCceeeeeecCC
Q 018248           86 N---------RYLGELS--FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKL-VDQIET-----VVNPTGLCDVSQNA  146 (359)
Q Consensus        86 ~---------~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~~~~~~~  146 (359)
                      .         +++..+.  +-+.|.|+.|.|++..++  .|..|.+|++..+.. ...+..     +......-+|+|..
T Consensus       103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH  182 (370)
T KOG1007|consen  103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH  182 (370)
T ss_pred             ccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence            3         2333443  446899999999987777  899999999976554 333322     23345567899976


Q ss_pred             CccEEEecCCCCeeEEEEecCC-eee-EEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCC-cEEEEeecCCC
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT-KKS-KYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDG-SLLQEMRRGAE  222 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~-~~~-~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~  222 (359)
                      +...++++  .|+++..|+.+. +.. ..-.+|...+..+.|+|+.+ +|++++.||. |+|||.+.. .++.++..  |
T Consensus       183 dgnqv~tt--~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--H  257 (370)
T KOG1007|consen  183 DGNQVATT--SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--H  257 (370)
T ss_pred             ccceEEEe--CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--C
Confidence            66667764  588999988775 222 23357888999999999877 6889999999 999999864 56777877  6


Q ss_pred             CcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee
Q 018248          223 RAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA  301 (359)
Q Consensus       223 ~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (359)
                      ...|+++.|+|.. ++|++++.|..|.+|...+-...+...........++.   ......-.+          ....+.
T Consensus       258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~---dseer~kpL----------~dg~l~  324 (370)
T KOG1007|consen  258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDE---DSEERVKPL----------QDGQLE  324 (370)
T ss_pred             ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcch---hhHHhcccc----------cccccc
Confidence            6699999999954 57889999999999988765433211111111111100   000000000          112233


Q ss_pred             EEeecCCcEEEeeecc-cCCEEEEEecCCeEEEEEeCC
Q 018248          302 QFRLPENVQYLVGFGR-QNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       302 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ++.-+++.|.+++||. |.-.+|+-+.||++.|=++++
T Consensus       325 tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  325 TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            4555678999999987 555678888899999887765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=3.9e-19  Score=150.44  Aligned_cols=286  Identities=12%  Similarity=0.124  Sum_probs=198.9

Q ss_pred             CCCCCceEEEEEccCCC---EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            3 QPDPITIHHLALNQDHG---CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~---~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      ..|..+|+|+.|-|+.+   ++++|+ |+.|.+|.++.........++ +|...+.  ++.-........+    .|+.+
T Consensus        51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-g~~~~~~--cv~a~~~~~~~~~----ad~~v  123 (764)
T KOG1063|consen   51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-GHCKECV--CVVARSSVMTCKA----ADGTV  123 (764)
T ss_pred             cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-CcceeEE--EEEeeeeEEEeec----cCceE
Confidence            36899999999999888   788998 999999999965566666775 4554444  4433222222222    68999


Q ss_pred             EEEECCCcc--EEeeecc---CcceeEEEEecc-eeEEE----ecCeEEEEEcc--cceeeeeEeccCCCceeeeeecCC
Q 018248           79 MIWDDHENR--YLGELSF---RSEVKNVRLRRD-RIVVV----LNQKVYVYNFT--DLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        79 ~iwd~~~~~--~~~~~~~---~~~v~~~~~~~~-~~~~~----~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      .+||.+..+  +...+..   .--..|+++.|+ +.++.    .+..|.++.-.  .-+.+..+.+|...+..++|+..+
T Consensus       124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~  203 (764)
T KOG1063|consen  124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG  203 (764)
T ss_pred             EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence            999985555  3333331   122345666663 44443    44455555433  225677889999999999998876


Q ss_pred             C-ccEEEecCCCCeeEEEEecCCe----------------------ee---E-------EeecccccccEEEEccCCcEE
Q 018248          147 G-PMVMACPGLLKGQVRVEDYGTK----------------------KS---K-------YITAHASRIASIAMTLDGRFV  193 (359)
Q Consensus       147 ~-~~~l~~~g~~d~~v~~~~~~~~----------------------~~---~-------~~~~~~~~i~~~~~s~~~~~l  193 (359)
                      . ..++|+ ++.|..|+||.....                      ..   .       .+.+|...|.++.|+|.+..|
T Consensus       204 ~~~~~laS-~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L  282 (764)
T KOG1063|consen  204 GDDLLLAS-SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL  282 (764)
T ss_pred             CCcEEEEe-cCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence            6 555555 889999999865311                      01   1       124899999999999999999


Q ss_pred             EEEeCCCCeEEEEEcCCC--cEEEEeecC---CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCC
Q 018248          194 ATASSKGTLIRVFNTMDG--SLLQEMRRG---AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSAS  268 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~--~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  268 (359)
                      ++++.|.+ +.+|...+.  --+...+.+   ...+......|+|++..+++-+..|..++|..+....           
T Consensus       283 LSASaDks-miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~-----------  350 (764)
T KOG1063|consen  283 LSASADKS-MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF-----------  350 (764)
T ss_pred             eecccCcc-eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc-----------
Confidence            99999999 999976543  222222221   1335688999999999999999999999999333221           


Q ss_pred             CCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          269 EPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                                          |.++.        .+..|.+.|..++|+|.|.+|++++.|-+-|+|.-
T Consensus       351 --------------------w~~~~--------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~  390 (764)
T KOG1063|consen  351 --------------------WTQEP--------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR  390 (764)
T ss_pred             --------------------eeecc--------ccccccccceeeeecCCCCEEEEeccccceeeecc
Confidence                                11110        13345678899999999999999999999999844

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=140.89  Aligned_cols=277  Identities=9%  Similarity=0.116  Sum_probs=183.2

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +|.+.|+++.|-.+++ |.+|. .|.+.+|++.+........+  .|...+..+...++ +.+..-+    .|..+.+|+
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqg----Rd~~L~lw~   83 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQG----RDPLLILWT   83 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcC----CCceEEEEE
Confidence            7889999999998887 66777 89999999998766644443  35666666666655 3333334    689999999


Q ss_pred             CCCccEEeeeccCcceeEEEEec-----ce----eEEE-ec---CeEEEEEcccceeeeeEe----ccCCCceeeeeecC
Q 018248           83 DHENRYLGELSFRSEVKNVRLRR-----DR----IVVV-LN---QKVYVYNFTDLKLVDQIE----TVVNPTGLCDVSQN  145 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~~~-~d---~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~  145 (359)
                      +.-+..+..-  .-.++++.|.+     +.    +.+. .+   ..+.+-|......+....    ...+.+.+..+...
T Consensus        84 ia~s~~i~i~--Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   84 IAYSAFISIH--SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             ccCcceEEEe--eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            8775544332  22233333332     22    1222 11   112223321111111111    11223333333333


Q ss_pred             -CCccEEEecCCCCeeEEEEecCCe-----------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC--C
Q 018248          146 -AGPMVMACPGLLKGQVRVEDYGTK-----------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD--G  211 (359)
Q Consensus       146 -~~~~~l~~~g~~d~~v~~~~~~~~-----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~--~  211 (359)
                       +...+++ +|.++|.+.+|+...+           .......|..+|.++.+.+.-..=++|+.+.. +..|.+..  +
T Consensus       162 c~s~~lll-aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~g  239 (323)
T KOG0322|consen  162 CGSTFLLL-AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTG  239 (323)
T ss_pred             ccceEEEE-EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccC
Confidence             3344444 4999999999998863           33344578999999999876655667777777 88888753  2


Q ss_pred             cE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeee
Q 018248          212 SL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGV  289 (359)
Q Consensus       212 ~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (359)
                      .+  ..+...  ....|..+.+-||++.+|+++.|+.||||..++..+..                              
T Consensus       240 slq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA------------------------------  287 (323)
T KOG0322|consen  240 SLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA------------------------------  287 (323)
T ss_pred             cccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh------------------------------
Confidence            22  112221  23478899999999999999999999999999987542                              


Q ss_pred             cceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          290 LPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                                  .++.|.+.|++++|+||...+|+++.|++|-+|++
T Consensus       288 ------------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  288 ------------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------------hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                        24556678999999999999999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=5.5e-18  Score=142.96  Aligned_cols=268  Identities=10%  Similarity=0.111  Sum_probs=175.1

Q ss_pred             CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC-CccE--EeeeccCcceeEE
Q 018248           26 ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH-ENRY--LGELSFRSEVKNV  101 (359)
Q Consensus        26 d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~--~~~~~~~~~v~~~  101 (359)
                      ++.|++|++.+ ++......+.  +.+....+.++++++.+++++.   .++.|.+|++. +++.  +...........+
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i   85 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPLPGSPTHI   85 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence            89999999964 3333434442  3455677888998888776654   36899999986 3332  2333344567789


Q ss_pred             EEecceeEEE----ecCeEEEEEccc-ce---eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeE
Q 018248          102 RLRRDRIVVV----LNQKVYVYNFTD-LK---LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSK  172 (359)
Q Consensus       102 ~~~~~~~~~~----~d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~  172 (359)
                      .++|++++++    .++.|.+|++.+ +.   .+..+... .....++++|+++..+++  ...++.|.+|+.+. ..+.
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~--~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVP--CLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEe--eCCCCEEEEEEECCCCccc
Confidence            9999998776    589999999953 32   22222222 234557788988764433  55678999987754 2221


Q ss_pred             E-----ee-cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCC--Cc--EEEEeecC----CCCcceEEEEecCCCCE
Q 018248          173 Y-----IT-AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMD--GS--LLQEMRRG----AERAEIYSLAFSSNAQW  237 (359)
Q Consensus       173 ~-----~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~--~~--~~~~~~~~----~~~~~i~~~~~s~~~~~  237 (359)
                      .     .. ........++|+|+|+++++++. ++. |.+|++..  ++  .+..+...    .+......+.++|++++
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            0     11 11334678999999999988876 777 99999973  32  23333211    01123346899999999


Q ss_pred             EEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          238 LAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       238 l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                      |+++.. ++.|.+|+++.....                        +.++..              ... ......++|+
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~------------------------~~~~~~--------------~~~-~~~p~~~~~~  282 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSV------------------------LSFEGH--------------QPT-ETQPRGFNID  282 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCe------------------------EEEeEE--------------Eec-cccCCceEEC
Confidence            988854 688999999764311                        111110              000 0123468999


Q ss_pred             ccCCEEEEEec-CCeEEEEEeCCCCC
Q 018248          317 RQNNTIVIVGL-DGSYYKCEFDPMKG  341 (359)
Q Consensus       317 ~~~~~l~~~~~-dg~i~v~~~~~~~~  341 (359)
                      |||++|+++.. +++|.+|+++.+++
T Consensus       283 ~dg~~l~va~~~~~~v~v~~~~~~~g  308 (330)
T PRK11028        283 HSGKYLIAAGQKSHHISVYEIDGETG  308 (330)
T ss_pred             CCCCEEEEEEccCCcEEEEEEcCCCC
Confidence            99999998887 89999999986553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.2e-19  Score=137.53  Aligned_cols=246  Identities=12%  Similarity=0.104  Sum_probs=177.4

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeee
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~  128 (359)
                      ..++.|+..+.++++..    .||.|.|||+.+...-+.+. |-.+|.+++|+++|+.++   .|..|.+||+..|.+++
T Consensus        26 a~~~~Fs~~G~~lAvGc----~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGC----ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcceeeeec----cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence            66778888888888877    78999999999998878887 999999999999999888   89999999999999988


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec-c----cccccEEEEccCCcEEEEEeCCCCeE
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA-H----ASRIASIAMTLDGRFVATASSKGTLI  203 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~-~----~~~i~~~~~s~~~~~l~~~~~dg~~i  203 (359)
                      .+.- ..++..+.|+|...+..+++.-  +..-.+-......-..+.. .    .....+..|.+.|+++++|...|. +
T Consensus       102 rirf-~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-l  177 (405)
T KOG1273|consen  102 RIRF-DSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-L  177 (405)
T ss_pred             EEEc-cCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-E
Confidence            8864 5788999999998887777632  2222221121111111111 1    112233468899999999999999 9


Q ss_pred             EEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeee
Q 018248          204 RVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSF  283 (359)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (359)
                      .++|..+.+++..++.. ....|.++.++..|+.|+.-+.|..||.|+++.--...                   .....
T Consensus       178 lv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~-------------------r~~e~  237 (405)
T KOG1273|consen  178 LVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG-------------------RDGEV  237 (405)
T ss_pred             EEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC-------------------ccCCc
Confidence            99999999999888763 23688999999999999999999999999987422100                   00000


Q ss_pred             eEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeCC
Q 018248          284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDP  338 (359)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~  338 (359)
                      ....    ++.+-.        ..-.-..+.|+.||.++++++. ...+|||.-..
T Consensus       238 e~~~----K~qDvV--------Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  238 EPEH----KLQDVV--------NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             ChhH----HHHHHH--------hhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence            0000    000000        0011246899999999998887 66799997554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.5e-21  Score=170.69  Aligned_cols=244  Identities=13%  Similarity=0.171  Sum_probs=189.5

Q ss_pred             CCceEEEEEccCCCE----EEEec-CCceEEEEcCCC----cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248            6 PITIHHLALNQDHGC----FATGT-ETGFRVYLSDPY----KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~----l~~~~-d~~i~iw~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      ..+-+.++|.+.|..    ||.|. ||.|.+|+....    +........ .|.+.|..+.|.+....++ ++|+  .||
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlL-ASGa--~~g  139 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLL-ASGA--DDG  139 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCcee-eccC--CCC
Confidence            456789999998877    66666 999999998752    122222333 7999999999887655333 2333  689


Q ss_pred             eEEEEECCCccEEeeec---cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCC--CceeeeeecCCC
Q 018248           77 KVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVN--PTGLCDVSQNAG  147 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~  147 (359)
                      .|.|||+..-+.-..+.   ..+.|.+++|+..-..++    .+|.+.|||++..+.+..+..+..  .+..++|+|+..
T Consensus       140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence            99999998755444442   568899999998765554    778999999988877777765443  356889999988


Q ss_pred             ccEEEecCCC-CeeEEEEecCC--eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          148 PMVMACPGLL-KGQVRVEDYGT--KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       148 ~~~l~~~g~~-d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                      ..++++++.. .-.|.+|+.+.  .+++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+.++..  ..
T Consensus       220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~--~~  296 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA--QG  296 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC--CC
Confidence            7766664432 23455599764  6778889999999999999966 79999999999 99999999999999987  55


Q ss_pred             cceEEEEecCCCC-EEEEEcCCCcEEEEEccCCC
Q 018248          224 AEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       224 ~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..+..+.|.|... .+++++.||.|.|+.+....
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            7999999999665 88889999999999998766

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=5.6e-20  Score=154.06  Aligned_cols=248  Identities=10%  Similarity=0.120  Sum_probs=168.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|.+.|..+.|-|....|++++ |.++++||++..+..-...+. ||.+.+..+++.+....++.. |+  .||.|.||
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~t-Gg--RDg~illW  172 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCT-GG--RDGEILLW  172 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceee-cc--CCCcEEEE
Confidence            46999999999999667788888 999999999987665544344 999999999999876655444 44  68999999


Q ss_pred             ECCCcc--------------------EEe-------eec-cCcceeE---EEEecceeEEE----ecCeEEEEEccccee
Q 018248           82 DDHENR--------------------YLG-------ELS-FRSEVKN---VRLRRDRIVVV----LNQKVYVYNFTDLKL  126 (359)
Q Consensus        82 d~~~~~--------------------~~~-------~~~-~~~~v~~---~~~~~~~~~~~----~d~~i~i~d~~~~~~  126 (359)
                      |+.-..                    ...       .-. +...|.+   +.+..|...++    .|+.|++||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            975321                    000       001 2233444   44455655555    699999999976543


Q ss_pred             eeeEe------ccCC---CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE---Eeeccccc--ccEEEEccCCcE
Q 018248          127 VDQIE------TVVN---PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK---YITAHASR--IASIAMTLDGRF  192 (359)
Q Consensus       127 ~~~~~------~~~~---~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~~~~~~--i~~~~~s~~~~~  192 (359)
                      ....+      .+..   .+..+.+.-|..+.+|.+++ .|+.|++|+.....+.   .+.++...  -..-..+|++.+
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence            32221      1111   23445555555444455534 5999999988764333   33333211  112246899999


Q ss_pred             EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCC
Q 018248          193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      |++|+.|.. .++|.+.+.+.-..+..+ |.-.|++++|.|.. .-++++++|..++||++..+..
T Consensus       332 l~SgSsd~~-ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  332 LLSGSSDEQ-AYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             EeccCCCcc-eeeeeecCccCChhhhhC-cceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence            999999999 999999887654444333 77899999998743 3466779999999999976543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.7e-19  Score=142.46  Aligned_cols=277  Identities=14%  Similarity=0.122  Sum_probs=186.7

Q ss_pred             EEEEccCCCEEEEec--CC--c--eEEEEcCCCcceeeeecccCCCCceeEEEEecc-------CCEEEEEecCCCCCCe
Q 018248           11 HLALNQDHGCFATGT--ET--G--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR-------SNIICLVNSGPHQSNK   77 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~--d~--~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~~~~~~~~~~~d~~   77 (359)
                      .+..-|+..+++++.  +.  .  ++||+-..........+-  -.....|++|.-.       +|++++.+    .|..
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~i--lpafPLC~ewld~~~~~~~~gNyvAiGt----mdp~  203 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFI--LPAFPLCIEWLDHGSKSGGAGNYVAIGT----MDPE  203 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEeccee--ccCcchhhhhhhcCCCCCCCcceEEEec----cCce
Confidence            455667777888876  32  2  444543321111111110  0112233444322       46777777    7899


Q ss_pred             EEEEECCCcc---EE----------------eee---ccCcceeEEEEecceeEE-E---ecCeEEEEEcccceeeeeEe
Q 018248           78 VMIWDDHENR---YL----------------GEL---SFRSEVKNVRLRRDRIVV-V---LNQKVYVYNFTDLKLVDQIE  131 (359)
Q Consensus        78 i~iwd~~~~~---~~----------------~~~---~~~~~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~  131 (359)
                      |.|||+.-..   +.                +..   .|...|..+.|+..-..+ +   .|.+|++||+.++++...+.
T Consensus       204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~  283 (463)
T KOG0270|consen  204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT  283 (463)
T ss_pred             eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence            9999964210   00                001   166778888888875444 4   89999999999999999999


Q ss_pred             ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcC
Q 018248          132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTM  209 (359)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~  209 (359)
                      .|...|..+.|.|.... +|++ |+.|++|.+.+.+ .......-.-.+.|..++|.|... .++++..||. |+-+|+|
T Consensus       284 ~~~k~Vq~l~wh~~~p~-~LLs-Gs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~~~D~R  360 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPS-VLLS-GSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VYYFDIR  360 (463)
T ss_pred             hcCCceeEEEecCCCce-EEEe-ccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EEeeecC
Confidence            99999999999998775 3444 8899999995544 222222222457899999999765 5667788999 9999999


Q ss_pred             CC-cEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEee
Q 018248          210 DG-SLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIR  287 (359)
Q Consensus       210 ~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (359)
                      +. +++.+++.  |.++|.++++++.- .+|++++.|+.|++|++....+..                            
T Consensus       361 ~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~----------------------------  410 (463)
T KOG0270|consen  361 NPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS----------------------------  410 (463)
T ss_pred             CCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc----------------------------
Confidence            75 88888887  88899999998754 478999999999999998765321                            


Q ss_pred             eecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCC
Q 018248          288 GVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~  338 (359)
                       ...+.+.           -+...+.++.|+- -.|+.|+..+.++||++-.
T Consensus       411 -v~~~~~~-----------~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  411 -VKEHSFK-----------LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             -ccccccc-----------ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence             0000010           0123456666654 5678888888999999865

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=139.99  Aligned_cols=277  Identities=14%  Similarity=0.140  Sum_probs=186.6

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEec--cCCEEEEEecCCCCCCeEEEEECCCccEEeeec--
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF--RSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--   93 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--   93 (359)
                      ..+|++. .|.|++||..+++...  .+. +|...+..+.|.-  .+..+..++    .||+|++||++.......+.  
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~--~fk-~~~~~~N~vrf~~~ds~h~v~s~s----sDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE--EFK-GPPATTNGVRFISCDSPHGVISCS----SDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh--eec-CCCCcccceEEecCCCCCeeEEec----cCCeEEEEEeecchhhhheecc
Confidence            3466666 9999999999876663  444 6677777777765  455565555    68999999998876655554  


Q ss_pred             -cC-cceeEEEEecceeEEE-------ecCeEEEEEccccee-eeeE-eccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           94 -FR-SEVKNVRLRRDRIVVV-------LNQKVYVYNFTDLKL-VDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        94 -~~-~~v~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                       ++ .+..+++.+-.+.+++       .+-.|.+||++..+. +..+ +.|...|+.+.|+|....+ |+ +|+.||.|.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl-Ll-SGSvDGLvn  191 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL-LL-SGSVDGLVN  191 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe-EE-eecccceEE
Confidence             33 4566777765666665       677899999987665 4444 6789999999999988763 34 488999999


Q ss_pred             EEecCCee----eEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC----------cceE
Q 018248          163 VEDYGTKK----SKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAER----------AEIY  227 (359)
Q Consensus       163 ~~~~~~~~----~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~----------~~i~  227 (359)
                      +++.....    +...-.|...|.++.|..++ +.|.+-+..++ ..+|+++.+.....+....-.          ..+.
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I  270 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI  270 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence            98776532    23334567789999999877 35778888888 999999988765555432100          1111


Q ss_pred             EEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee-
Q 018248          228 SLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL-  305 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  305 (359)
                      ......+...++.++. -+...++-+.......                                    .....+.++. 
T Consensus       271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~------------------------------------~~~~~a~l~g~  314 (376)
T KOG1188|consen  271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS------------------------------------LLTEPAILQGG  314 (376)
T ss_pred             ecccCCCcceEEEeccccCceeEEEeeeccccc------------------------------------ccCccccccCC
Confidence            1111224445555444 5666666665422110                                    0001111222 


Q ss_pred             cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248          306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       306 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                      +...|+++.|...+..+++||+||.+.+|..+...+
T Consensus       315 ~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e  350 (376)
T KOG1188|consen  315 HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATE  350 (376)
T ss_pred             cHHHHHHHhhhcccceeeccCCCceEEEEecCCccc
Confidence            345678888888889999999999999999755443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=5.6e-18  Score=134.87  Aligned_cols=286  Identities=12%  Similarity=0.160  Sum_probs=193.4

Q ss_pred             CCCceEEEEEccCCC-EEEEec-CCceEEEEcCCCc-------ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            5 DPITIHHLALNQDHG-CFATGT-ETGFRVYLSDPYK-------PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         5 h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      ...+|.++.|.++.. .+|+|+ |..|+||.++...       ..+...+. .|...|+++.|+++++.++.++    .+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~----D~   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGG----DG   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecC----CC
Confidence            357899999999877 999999 9999999986322       23334454 8999999999999998888776    67


Q ss_pred             CeEEEEECC--------C-----c---cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC
Q 018248           76 NKVMIWDDH--------E-----N---RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN  135 (359)
Q Consensus        76 ~~i~iwd~~--------~-----~---~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~  135 (359)
                      |.|.+|...        +     .   .....+. |...|..++|+|+++++.   .|+.+++||+..|+....+..|.+
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence            999999755        2     1   1122233 889999999999999988   899999999999999999999999


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCC----ee------------------eEEeec--ccccccEEEEccCCc
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT----KK------------------SKYITA--HASRIASIAMTLDGR  191 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~----~~------------------~~~~~~--~~~~i~~~~~s~~~~  191 (359)
                      .+..++|.|.++.  +++ -+.|...+......    ..                  .+.+..  -..-...++|+|+|.
T Consensus       167 yvqgvawDpl~qy--v~s-~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  167 YVQGVAWDPLNQY--VAS-KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             ccceeecchhhhh--hhh-hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            9999999888765  444 22344333322211    11                  111100  011245678999999


Q ss_pred             EEEEEeC----CCC----eEEEEEcCC-CcEEEEeecCCCCcceEEEEecC------------------CCCEEEEEcCC
Q 018248          192 FVATASS----KGT----LIRVFNTMD-GSLLQEMRRGAERAEIYSLAFSS------------------NAQWLAASSDK  244 (359)
Q Consensus       192 ~l~~~~~----dg~----~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~d  244 (359)
                      +|++.+.    .+.    ..++|+-.. .++...+..  ...+...+.|+|                  -+-.++.++. 
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-  320 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-  320 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-
Confidence            9987642    222    034554322 122223322  223344444433                  2234455554 


Q ss_pred             CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEE
Q 018248          245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVI  324 (359)
Q Consensus       245 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  324 (359)
                      ..|+|||.++..+..                         .+                -.+|-..++.++|++||..|+.
T Consensus       321 ~svyvydtq~~~P~~-------------------------~v----------------~nihy~~iTDiaws~dg~~l~v  359 (434)
T KOG1009|consen  321 NSVYVYDTQTLEPLA-------------------------VV----------------DNIHYSAITDIAWSDDGSVLLV  359 (434)
T ss_pred             ceEEEeccccccceE-------------------------EE----------------eeeeeeeecceeecCCCcEEEE
Confidence            469999998866431                         11                1233456789999999999999


Q ss_pred             EecCCeEEEEEeCCCCCC
Q 018248          325 VGLDGSYYKCEFDPMKGG  342 (359)
Q Consensus       325 ~~~dg~i~v~~~~~~~~~  342 (359)
                      .+.||..-.-.+++.+-|
T Consensus       360 SS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  360 SSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             eccCCceEEEEEcchhcc
Confidence            999999998888887666

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=5.9e-20  Score=163.68  Aligned_cols=282  Identities=11%  Similarity=0.124  Sum_probs=190.2

Q ss_pred             ceEEEEEccCCC-EEEEec-----------CCceEEEEcCCCcc----eeeeecccCCCCceeEEEEeccCCEE--EEEe
Q 018248            8 TIHHLALNQDHG-CFATGT-----------ETGFRVYLSDPYKP----IMRRDFDRNPRGGTQLVSMLFRSNII--CLVN   69 (359)
Q Consensus         8 ~v~~~~~s~~g~-~l~~~~-----------d~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~--~~~~   69 (359)
                      +--.++|+|++. ++|+|.           +.++.||.++-...    .....+.  -......++|...++..  ++++
T Consensus         8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaG   85 (1049)
T KOG0307|consen    8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAG   85 (1049)
T ss_pred             ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeec
Confidence            344678999997 555543           34466666642211    1222221  13445566676655442  3344


Q ss_pred             cCCCCCCeEEEEECCC---c---cEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEec--cCCC
Q 018248           70 SGPHQSNKVMIWDDHE---N---RYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIET--VVNP  136 (359)
Q Consensus        70 ~~~~~d~~i~iwd~~~---~---~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~  136 (359)
                      +.  .||.|.+||...   +   ..+.+.. |.+.|..+.|++... +++   .+|.|.|||+...+.-.....  ....
T Consensus        86 G~--edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   86 GL--EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             cc--cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            43  799999999654   2   2344444 999999999999765 666   899999999976544333311  3445


Q ss_pred             ceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEEeeccc--ccccEEEEccCCc-EEEEEeCCCC--eEEEEEcCC
Q 018248          137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKYITAHA--SRIASIAMTLDGR-FVATASSKGT--LIRVFNTMD  210 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~~~~~~--~~i~~~~~s~~~~-~l~~~~~dg~--~i~iwd~~~  210 (359)
                      |.+++|+..-.. +|+ +++.+|.+.|||.+.+ ++..+..+.  ..+..++|+|+.. .|++++.|..  .|.+||++.
T Consensus       164 I~~lsWNrkvqh-ILA-S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  164 IKCLSWNRKVSH-ILA-SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             ceEeccchhhhH-Hhh-ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            666666654443 344 4778999999998875 344444333  3477899999865 5666665542  289999886


Q ss_pred             C-cEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeee
Q 018248          211 G-SLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRG  288 (359)
Q Consensus       211 ~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (359)
                      - .++++++.  |...|.++.|++.+ ++|++++.|+.|.+|+.++++...                             
T Consensus       242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~-----------------------------  290 (1049)
T KOG0307|consen  242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG-----------------------------  290 (1049)
T ss_pred             cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee-----------------------------
Confidence            4 46666755  88899999999865 899999999999999999987220                             


Q ss_pred             ecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEecCCeEEEEEeCCC
Q 018248          289 VLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~  339 (359)
                                   .+....+++..+.|.|... .+++++-||.|-||.+...
T Consensus       291 -------------~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  291 -------------ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             -------------ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence                         0111236778899999665 7788888999999998653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.9e-16  Score=138.90  Aligned_cols=288  Identities=19%  Similarity=0.324  Sum_probs=211.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccC-CCCceeEEEE-eccCCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRN-PRGGTQLVSM-LFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~-~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      ..|...|.++.+.+.+..++.++ |+.+.+|+...... ....+. + +...+..+.. .++....+.....  .|+.+.
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~  137 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK-LIKSLE-GLHDSSVSKLALSSPDGNSILLASSS--LDGTVK  137 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce-eEEEEe-ccCCCceeeEEEECCCcceEEeccCC--CCccEE
Confidence            46889999999999999999998 99999999987641 122332 2 2225555555 4444523333222  479999


Q ss_pred             EEECCC-ccEEeeec-cCcceeEEEEecceeEEE---e-cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           80 IWDDHE-NRYLGELS-FRSEVKNVRLRRDRIVVV---L-NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        80 iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      +|+... ......+. |...|..+.|+|++..++   . ++.+++|++..+..+..+..|...+..++++|++. .++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  216 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-LLIAS  216 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-eEEEE
Confidence            999887 66666666 889999999999997666   3 89999999988888888888888999999997776 23433


Q ss_pred             cCCCCeeEEEEecCC-eeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE-EEEeecCCCCcceEEEE
Q 018248          154 PGLLKGQVRVEDYGT-KKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL-LQEMRRGAERAEIYSLA  230 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~-~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~  230 (359)
                       ++.|+.+++|+... .... .+..|.... ...|+|++.++++++.|+. +++|+++.... +..+..  |...+.++.
T Consensus       217 -~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~  291 (466)
T COG2319         217 -GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSVLSVA  291 (466)
T ss_pred             -ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccEEEEE
Confidence             56899999997663 4444 477777765 4489999999999999999 99999987665 444433  678999999


Q ss_pred             ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248          231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ  310 (359)
Q Consensus       231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (359)
                      |+|++..+++++.|+.+++|+........                                 ...       ...+...+
T Consensus       292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------------------~~~-------~~~~~~~~  331 (466)
T COG2319         292 FSPDGKLLASGSSDGTVRLWDLETGKLLS---------------------------------SLT-------LKGHEGPV  331 (466)
T ss_pred             ECCCCCEEEEeeCCCcEEEEEcCCCceEE---------------------------------Eee-------ecccCCce
Confidence            99999988888888889999887765210                                 000       11223356


Q ss_pred             EEeeecccCCEEEEE-ecCCeEEEEEeCCCC
Q 018248          311 YLVGFGRQNNTIVIV-GLDGSYYKCEFDPMK  340 (359)
Q Consensus       311 ~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~  340 (359)
                      ..+.|.+++..++.+ ..|+.+++|++....
T Consensus       332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            777773333456555 578889988887643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=1.2e-17  Score=144.54  Aligned_cols=261  Identities=11%  Similarity=0.091  Sum_probs=179.2

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE--Ee-----eeccCccee
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY--LG-----ELSFRSEVK   99 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~-----~~~~~~~v~   99 (359)
                      +.+.||++...... ...+.  -...+.++.+++....+++++.   .+|.|.+||+..+..  ..     ...|..++.
T Consensus       222 ~~~~vW~~~~p~~P-e~~~~--~~s~v~~~~f~p~~p~ll~gG~---y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~  295 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTP-ELVLE--SPSEVTCLKFCPFDPNLLAGGC---YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT  295 (555)
T ss_pred             ceEEEEecCCCCCc-eEEEe--cCCceeEEEeccCCcceEEeec---cCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence            35899999865222 22221  2577888888876555554444   689999999887654  22     223889999


Q ss_pred             EEEEecce---eEEE--ecCeEEEEEccccee-e-----eeEe------ccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248          100 NVRLRRDR---IVVV--LNQKVYVYNFTDLKL-V-----DQIE------TVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus       100 ~~~~~~~~---~~~~--~d~~i~i~d~~~~~~-~-----~~~~------~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      .+.|..+.   .++.  .||.|..|+++.... .     ....      .....+..++|.+.....+++  |++.|.|.
T Consensus       296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v~  373 (555)
T KOG1587|consen  296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKVY  373 (555)
T ss_pred             EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEEE
Confidence            99996542   2333  999999998754321 1     1111      112345677887776665554  67899998


Q ss_pred             E-EecCC--ee------eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEec
Q 018248          163 V-EDYGT--KK------SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       163 ~-~~~~~--~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                      . .....  ..      ...+..|.++|+++.++|-+..++..+.|-+ ++||... ...++..+..  +...+++++||
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWS  450 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWS  450 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEc
Confidence            8 33222  22      3345678899999999998875555555888 9999977 6667767765  55679999999


Q ss_pred             CCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248          233 SNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY  311 (359)
Q Consensus       233 ~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (359)
                      |-. ..++++..||.|.|||+......+.                                        ++........+
T Consensus       451 ptrpavF~~~d~~G~l~iWDLl~~~~~Pv----------------------------------------~s~~~~~~~l~  490 (555)
T KOG1587|consen  451 PTRPAVFATVDGDGNLDIWDLLQDDEEPV----------------------------------------LSQKVCSPALT  490 (555)
T ss_pred             CcCceEEEEEcCCCceehhhhhccccCCc----------------------------------------ccccccccccc
Confidence            965 4677888899999999988764431                                        00111122345


Q ss_pred             EeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          312 LVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       312 ~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .+.|+++|+.|++|...|.+++|++..
T Consensus       491 ~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  491 RVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            678899999999999999999999964

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=1.7e-19  Score=145.90  Aligned_cols=227  Identities=17%  Similarity=0.171  Sum_probs=188.8

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      .-+.+.++.+|++|+.|+ .|.+..+|..++...+...+    ...|..+.|..+..+++++-     ...+.||| ..|
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVAQ-----K~y~yvYD-~~G  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVAQ-----KKYVYVYD-NNG  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhhh-----hceEEEec-CCC
Confidence            457889999999999999 99999999999888777666    57788888888888877664     68999999 888


Q ss_pred             cEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248           87 RYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV  163 (359)
Q Consensus        87 ~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~  163 (359)
                      ..++.++....|..+.|.|...+++   ..|.++--|+.+|+.+..+....+.+.+++-+|-+.   +...|...|+|.+
T Consensus       201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---Vih~GhsnGtVSl  277 (545)
T KOG1272|consen  201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---VIHLGHSNGTVSL  277 (545)
T ss_pred             cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---eEEEcCCCceEEe
Confidence            9999998778899999999988887   789999999999999999988888777777777654   4444888999999


Q ss_pred             EecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248          164 EDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       164 ~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      |..+. .++..+..|.++|.++++.++|+|+||.+.|.. ++|||+++...+.++..   +.+...+++|..| +||.+ 
T Consensus       278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA~~-  351 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLALS-  351 (545)
T ss_pred             cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ceeee-
Confidence            99886 556667889999999999999999999999999 99999999888777764   3466788888655 44444 


Q ss_pred             CCCcEEEEEcc
Q 018248          243 DKGTVHVFGLK  253 (359)
Q Consensus       243 ~dg~i~iw~~~  253 (359)
                      ....|.||.=.
T Consensus       352 ~G~~v~iw~d~  362 (545)
T KOG1272|consen  352 YGDHVQIWKDA  362 (545)
T ss_pred             cCCeeeeehhh
Confidence            44469999643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.3e-17  Score=138.67  Aligned_cols=290  Identities=14%  Similarity=0.186  Sum_probs=212.8

Q ss_pred             CCCCceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .++..-+.|..+|||+|+ |+|. .-.|++||+......+.+.+.   ...|...-++-+-...++..    .|..|.+-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD---ae~V~feiLsDD~SK~v~L~----~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD---AEVVDFEILSDDYSKSVFLQ----NDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc---ccceeEEEeccchhhheEee----cCceeeeh
Confidence            466778899999999998 5666 899999999988888888775   56666666655555556666    57888776


Q ss_pred             ECCCccEEeeeccCcceeEEEEecc--eeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRD--RIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      . . +..-..++.+..-.+++++.-  ..+++ ....|+-++++.|+-+..+......++++.+++-..  ++++ |..+
T Consensus       122 a-k-~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-Gt~~  196 (703)
T KOG2321|consen  122 A-K-YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-GTED  196 (703)
T ss_pred             h-h-cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-cccC
Confidence            4 2 222223333444556666532  23334 778899999999999999988888899999888765  3665 8889


Q ss_pred             eeEEEEecCCeeeE-E------eecccc-----cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248          159 GQVRVEDYGTKKSK-Y------ITAHAS-----RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI  226 (359)
Q Consensus       159 ~~v~~~~~~~~~~~-~------~~~~~~-----~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i  226 (359)
                      |.|..|+.+.+... .      +..|.+     .|+++.|+.+|-.+++|..+|. |.|||+++.+++..-. |...-+|
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kd-h~~e~pi  274 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKD-HGYELPI  274 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecc-cCCccce
Confidence            99999998764321 1      222333     4999999999999999999999 9999999998886554 4456799


Q ss_pred             EEEEecCC--CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          227 YSLAFSSN--AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       227 ~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      ..+.|.+.  +..+++. +...++|||-.++++..                                 ...         
T Consensus       275 ~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a---------------------------------siE---------  311 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA---------------------------------SIE---------  311 (703)
T ss_pred             eeecccccCCCceEEec-chHHhhhcccccCCcee---------------------------------ecc---------
Confidence            99999775  3455554 45679999999988431                                 000         


Q ss_pred             ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCC
Q 018248          305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKP  355 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~  355 (359)
                       |...++.+++-|++.+++++-+++.+..|-++.  -|+.  ..|.+||++
T Consensus       312 -pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~--LGPa--PrWCSfLdn  357 (703)
T KOG2321|consen  312 -PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS--LGPA--PRWCSFLDN  357 (703)
T ss_pred             -ccCCcCceeeecCCceEEEecCCCcceeEEccc--cCCC--chhhhHHHh
Confidence             223467889999999999999999999887765  3444  458888875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=2.8e-18  Score=145.09  Aligned_cols=234  Identities=15%  Similarity=0.192  Sum_probs=177.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|++.|+|++|+.||+++|+|+ |+.|.+|+..- +..  ...  .|.+.+.++.|.|-...++.++-     ...-+|.
T Consensus        51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~--LkY--SH~D~IQCMsFNP~~h~LasCsL-----sdFglWS  120 (1081)
T KOG1538|consen   51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGI--LKY--SHNDAIQCMSFNPITHQLASCSL-----SDFGLWS  120 (1081)
T ss_pred             cccceEEEEEEccCCceeccCCCceeEEEecccc-cce--eee--ccCCeeeEeecCchHHHhhhcch-----hhccccC
Confidence            5999999999999999999999 99999998653 222  222  48999999988887777666552     5567887


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe---ccCCCceeeeeecCCCc---cEEEe
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE---TVVNPTGLCDVSQNAGP---MVMAC  153 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~l~~  153 (359)
                      ..+ +.+...+....+.+.+|..||++++   .+|+|.+-+- +++....++   +...++..++|+|....   -++++
T Consensus       121 ~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  121 PEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence            443 4444455567889999999999998   8999999875 444433443   35678899999997532   22333


Q ss_pred             cCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          154 PGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                       .....++..+..+++.+..-+.-.-...|+.+.|+|.++..|+.|+. +.+|- +.|-.+.++..  ....|+.++..|
T Consensus       199 -~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WIWtV~~~P  273 (1081)
T KOG1538|consen  199 -ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIWTVQAKP  273 (1081)
T ss_pred             -EeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeEEEEEEcc
Confidence             22344555566666655544444556789999999999999999999 99995 67877777754  557999999999


Q ss_pred             CCCEEEEEcCCCcEEEEEccC
Q 018248          234 NAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ++++++.|+.||+|--|++..
T Consensus       274 NsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  274 NSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CCceEEEEEccCeeehhhhHH
Confidence            999999999999999998854

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.3e-17  Score=131.17  Aligned_cols=305  Identities=13%  Similarity=0.122  Sum_probs=197.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc----ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .|.+-|.++.||.++++|++|+ |..+++|+++..-    .+........|...|.+++|... +..++ +++  .+++|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~-SG~--~~~~V  129 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLY-SGE--RWGTV  129 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEe-cCC--Cccee
Confidence            5889999999999999999999 8999999987321    11112221134455666655432 33333 344  68999


Q ss_pred             EEEECCCccEEeeeccC---cceeEEEEecceeEEE---ecCeEEEEEcccce-eeeeE--eccCCCceeeeeecCCCcc
Q 018248           79 MIWDDHENRYLGELSFR---SEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK-LVDQI--ETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~  149 (359)
                      ..-|+++.+.+..+.+.   +.|..+..+|..+.++   .++.|.+||++..+ .+..+  .........+.|+|-...+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            99999999999988855   4899999999766665   89999999997654 22222  2233445667788876653


Q ss_pred             EEEecCCCCeeEEEEecCCeeeEE--------eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248          150 VMACPGLLKGQVRVEDYGTKKSKY--------ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~  221 (359)
                       +++ .+..+-+-+|+.+......        +......-.++.|+|+|..+++--.... -.+||+-+..+. .++..+
T Consensus       210 -i~~-~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~-V~k~D~  285 (609)
T KOG4227|consen  210 -ILV-NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCF-VLKSDH  285 (609)
T ss_pred             -EEe-ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccce-eEeccC
Confidence             333 4567778888887533211        1111223367889999998877665554 567887664432 222211


Q ss_pred             C------CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248          222 E------RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS  295 (359)
Q Consensus       222 ~------~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (359)
                      .      ...+.+++|-.|- .+++|+.+-.|++|.+........+.+           .|.....        +|.-.-
T Consensus       286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~-----------IG~~~~~--------~~~~~~  345 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQ-----------IGHDEEE--------MPSEIF  345 (609)
T ss_pred             CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccc-----------cCcchhh--------Cchhhe
Confidence            1      1356677886554 488999998999999976542211100           0000000        111111


Q ss_pred             cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      ....+..++.|...++.+.|+|....|++.+.+..+++|.-
T Consensus       346 i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  346 IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            12334456777788899999999999999999999999963

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=8.7e-18  Score=130.34  Aligned_cols=238  Identities=12%  Similarity=0.132  Sum_probs=168.2

Q ss_pred             CCCCceEEEEEccCC----CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDH----GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g----~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .|+..-+.++|+-|-    .++|+|+ -|.|+|.|+..++..  ..+. ||...|..+.+.|....+++.+.   .|..|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~-ghG~sINeik~~p~~~qlvls~S---kD~sv  160 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYR-GHGGSINEIKFHPDRPQLVLSAS---KDHSV  160 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--ccee-ccCccchhhhcCCCCCcEEEEec---CCceE
Confidence            478888999998643    3677777 899999999876544  4444 89999999999987654444333   78999


Q ss_pred             EEEECCCccEEeeec----cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE---------------------
Q 018248           79 MIWDDHENRYLGELS----FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI---------------------  130 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---------------------  130 (359)
                      ++|++++..++..+.    |.+.|.++.|++++..++   .|.+|++|++...+....+                     
T Consensus       161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~  240 (385)
T KOG1034|consen  161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH  240 (385)
T ss_pred             EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence            999999999999885    889999999999999988   8999999999643211111                     


Q ss_pred             -------eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-C--------------eeeEEeecccccccEEEE--
Q 018248          131 -------ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-T--------------KKSKYITAHASRIASIAM--  186 (359)
Q Consensus       131 -------~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~--------------~~~~~~~~~~~~i~~~~~--  186 (359)
                             ..|...|.++.|  -++  ++++-+ -++.|..|... .              ..+..+.-....|+-+.|  
T Consensus       241 fp~fst~diHrnyVDCvrw--~gd--~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~  315 (385)
T KOG1034|consen  241 FPDFSTTDIHRNYVDCVRW--FGD--FILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF  315 (385)
T ss_pred             cccccccccccchHHHHHH--Hhh--heeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence                   112222222222  222  233323 35677778762 1              112233333445555544  


Q ss_pred             ccCCcEEEEEeCCCCeEEEEEcCCCcEE--EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          187 TLDGRFVATASSKGTLIRVFNTMDGSLL--QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       187 s~~~~~l~~~~~dg~~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      .|-++.||.|...|. |.+||++..++.  .++........|...+||.||.+|+..++|++|.-||.-
T Consensus       316 d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  316 DPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            567889999999999 999999887653  222222234689999999999999999999999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=8e-18  Score=135.98  Aligned_cols=200  Identities=15%  Similarity=0.134  Sum_probs=142.9

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----EEeeec-cCcceeEEEEecce--eEEE--ecCeEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----YLGELS-FRSEVKNVRLRRDR--IVVV--LNQKVYV  118 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~--~~~~--~d~~i~i  118 (359)
                      -|.+.+.+++|+|..+.-.++.|.  .-|+|-+||+.+.+    -+..+. |..+|.++.|+|..  +++.  .||+|++
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~Gd--K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGD--KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             ecccceEEEEecccCcceEEEEcc--CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            358999999999998844444444  35999999995322    233333 88999999999964  3444  9999999


Q ss_pred             EEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCc-EE
Q 018248          119 YNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGR-FV  193 (359)
Q Consensus       119 ~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~-~l  193 (359)
                      -|++.+.....+..  .......+.++.....  +.. +..=|...+|+.+.  .....+.-|+..|++++++|... +|
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~--vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRS--VLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCcc--EEE-eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            99976543333332  2333344555555443  333 33455777766654  44566778888999999999655 78


Q ss_pred             EEEeCCCCeEEEEEcCCCcEEEE--eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          194 ATASSKGTLIRVFNTMDGSLLQE--MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ||++.|++ .+|||++.-.....  +..-.|...|.+..|||++-.|++.+.|..|+|||..
T Consensus       339 aT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  339 ATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            99999999 99999986433222  2222378899999999988889999999999999985

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=4.9e-19  Score=152.91  Aligned_cols=285  Identities=11%  Similarity=0.166  Sum_probs=196.4

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.+.|+|+.|...|.++++|+ |..++||..++....  ...+ ||.+.+..++.+.+.-.++..+    .|..|++|.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS----~D~vIrvWr  260 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAAS----NDKVIRVWR  260 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcc----cCceEEEEe
Confidence            4788999999999999999999 888999998876555  5555 9999999988877666666666    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec-----cCCCceeeeeecCCCccEEEecC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      +.++.++..+. |.+.|++++|+|-.  -. .||++++||.+ ...+.....     ...-+..+.+...+..  .++ |
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~--f~T-g  334 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDR--FLT-G  334 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccc--ccc-c
Confidence            99999999998 99999999999965  22 89999999976 111111110     0111112222222222  333 5


Q ss_pred             CCCeeEEEEecCCeeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          156 LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +.|+.-..|....     +..+...+.-+.++.+- .+.+++-.+-. +++|++.+|...+.+.+  |...+.-+.++|-
T Consensus       335 s~d~ea~n~e~~~-----l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQ-----LAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPF  406 (1113)
T ss_pred             cCCcccccchhhH-----hhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCC
Confidence            5555544433221     11112222222222222 34555656666 89999999999988887  5568888999985


Q ss_pred             C-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          235 A-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       235 ~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      . +...+++.||...|||+-.+.+..                                .++.          +.+.+...
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik--------------------------------~y~~----------gh~kl~d~  444 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIK--------------------------------HYFI----------GHGKLVDG  444 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcce--------------------------------eeec----------ccceeecc
Confidence            4 556788999999999999887542                                1221          23456678


Q ss_pred             eecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeecccc
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFL  353 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~  353 (359)
                      +||+||..++....-|.++|.....  +.....+++.+|+
T Consensus       445 kFSqdgts~~lsd~hgql~i~g~gq--s~s~k~ak~dqff  482 (1113)
T KOG0644|consen  445 KFSQDGTSIALSDDHGQLYILGTGQ--SKSQKKAKYDQFF  482 (1113)
T ss_pred             ccCCCCceEecCCCCCceEEeccCC--CccccccccceEe
Confidence            9999999999999999999886543  4444555666554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=1.7e-17  Score=132.18  Aligned_cols=240  Identities=13%  Similarity=0.143  Sum_probs=170.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcC--------C------CcceeeeecccCCCCceeEEEEeccCCEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSD--------P------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV   68 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~--------~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~   68 (359)
                      .|...|+++.|+|+|..||+|+ +|.+.+|...        +      ......+.+. +|...+..++|+++++.++..
T Consensus        63 ~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~  141 (434)
T KOG1009|consen   63 RHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSG  141 (434)
T ss_pred             CCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeee
Confidence            5889999999999999999999 8899999876        2      1122233444 899999999999999988887


Q ss_pred             ecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe--------cc---
Q 018248           69 NSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE--------TV---  133 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~--------~~---  133 (359)
                      +    -|+.+++||+..|+....+. |...+..++|.|-+++++   .|...+.+.+...+.++...        ..   
T Consensus       142 s----~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e  217 (434)
T KOG1009|consen  142 S----VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE  217 (434)
T ss_pred             e----ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence            7    68999999999999999998 999999999999999988   56656666554333222211        00   


Q ss_pred             ------------CCCceeeeeecCCCccEEEecCCCCeeEEE---------EecCC----eeeEEeecccccccEEEEcc
Q 018248          134 ------------VNPTGLCDVSQNAGPMVMACPGLLKGQVRV---------EDYGT----KKSKYITAHASRIASIAMTL  188 (359)
Q Consensus       134 ------------~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~---------~~~~~----~~~~~~~~~~~~i~~~~~s~  188 (359)
                                  ......++|+|++..  +++.   +|.+++         |..+.    ++...+.....+...+.|+|
T Consensus       218 ~~s~rLfhDeTlksFFrRlsfTPdG~l--lvtP---ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p  292 (434)
T KOG1009|consen  218 GKSTRLFHDETLKSFFRRLSFTPDGSL--LVTP---AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP  292 (434)
T ss_pred             cceeeeeecCchhhhhhhcccCCCCcE--EEcc---cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence                        011234577777653  4432   222221         22222    33334444444455555544


Q ss_pred             ------------------CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          189 ------------------DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       189 ------------------~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                                        -+-.+|.++.+ . |.+||.++..++..... .|-..|+.++|++||..|+..+.||...+-
T Consensus       293 Vy~elrp~~~~~~~~~lpyrlvfaiAt~~-s-vyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  293 VYYELRPLSSEKFLFVLPYRLVFAIATKN-S-VYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             eEEEeccccccccccccccceEEEEeecc-e-EEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEE
Confidence                              33356666666 4 99999999888877653 366899999999999999999999998888


Q ss_pred             EccCCC
Q 018248          251 GLKVDS  256 (359)
Q Consensus       251 ~~~~~~  256 (359)
                      -++..+
T Consensus       370 tfe~~e  375 (434)
T KOG1009|consen  370 TFEPWE  375 (434)
T ss_pred             EEcchh
Confidence            777765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.80  E-value=2.7e-17  Score=127.84  Aligned_cols=274  Identities=11%  Similarity=0.078  Sum_probs=186.3

Q ss_pred             EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      -++|||+|+++|++++-.+.|-|.++.+.......    -..|..+.|..+.-.++.+..   .++.|.+|++.+.+...
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c----ldki~yieW~ads~~ilC~~y---k~~~vqvwsl~Qpew~c   85 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC----LDKIVYIEWKADSCHILCVAY---KDPKVQVWSLVQPEWYC   85 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH----HHHhhheeeeccceeeeeeee---ccceEEEEEeecceeEE
Confidence            46899999999999977888989887665432222    356677788766665554443   57899999999999888


Q ss_pred             eec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC----------
Q 018248           91 ELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG----------  155 (359)
Q Consensus        91 ~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----------  155 (359)
                      .+. ....+.+++|+|+|+.+.    -+-.|.+|.+.+.+.. .++-....+...+|+++++...+++--          
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            888 778899999999997776    6789999999765543 334445556788999998875555420          


Q ss_pred             -----------------------CCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          156 -----------------------LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       156 -----------------------~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                                             .++..+.+|+.-..-........-.+..++|+|.+++|++|+.|+. +++.+--+.+
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh~tWk  243 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNHFTWK  243 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhceeeee
Confidence                                   0012222233222111111222357889999999999999999998 8875532111


Q ss_pred             EE------------------------------------------------------------EEeec----CCCCcceEE
Q 018248          213 LL------------------------------------------------------------QEMRR----GAERAEIYS  228 (359)
Q Consensus       213 ~~------------------------------------------------------------~~~~~----~~~~~~i~~  228 (359)
                      ..                                                            ..++.    ......+.-
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence            10                                                            00110    001235667


Q ss_pred             EEecCCCCEEEEEcCC--CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248          229 LAFSSNAQWLAASSDK--GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP  306 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (359)
                      ++||+|..++++-.+.  +.+-+||++..+-..                                           .-..
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-------------------------------------------vLiQ  360 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-------------------------------------------VLIQ  360 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhh-------------------------------------------hhhh
Confidence            8999999999987644  569999999866110                                           0012


Q ss_pred             CCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          307 ENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       307 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      ..+|....|.|....|+.+.....+|.|..
T Consensus       361 k~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  361 KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             ccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence            246788889998888888888888888864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=3.5e-16  Score=131.99  Aligned_cols=238  Identities=11%  Similarity=0.108  Sum_probs=157.8

Q ss_pred             CCceEEEEEccCCCEEEEec--CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .+....++++|++++|+++.  ++.|.+|+++. +.........  ..+....+.++++++.++.+..   .++.|.+|+
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~---~~~~v~v~~  108 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASY---NANCVSVSP  108 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEc---CCCeEEEEE
Confidence            35677899999999987765  78899999973 3322222221  2334567888888888877664   369999999


Q ss_pred             CCCc----cEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeee-------eEeccCCCceeeeeecCCC
Q 018248           83 DHEN----RYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVD-------QIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        83 ~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  147 (359)
                      +.+.    +.+..+........++++|++++++    .++.|.+||+.+...+.       .... ......+.|+|+++
T Consensus       109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~  187 (330)
T PRK11028        109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ  187 (330)
T ss_pred             ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence            8643    2233333344577889999997775    67999999996532221       1111 22345689999988


Q ss_pred             ccEEEecCCCCeeEEEEecCC-----eeeEEeecc------cccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCc---
Q 018248          148 PMVMACPGLLKGQVRVEDYGT-----KKSKYITAH------ASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGS---  212 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~-----~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~---  212 (359)
                      .++++.  ..++.|.+|+.+.     ..+..+...      ......+.++|++++|+++.. ++. |.+|++....   
T Consensus       188 ~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~  264 (330)
T PRK11028        188 YAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVL  264 (330)
T ss_pred             EEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeE
Confidence            755543  3478999977652     122222211      112336889999999999865 567 9999986433   


Q ss_pred             -EEEEeecCCCCcceEEEEecCCCCEEEEEcC-CCcEEEEEccCC
Q 018248          213 -LLQEMRRGAERAEIYSLAFSSNAQWLAASSD-KGTVHVFGLKVD  255 (359)
Q Consensus       213 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~  255 (359)
                       .+.....+   .....+.++|||++|++++. +++|.+|+++..
T Consensus       265 ~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        265 SFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE  306 (330)
T ss_pred             EEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence             22222221   24567899999999988775 889999998643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=5.8e-17  Score=125.65  Aligned_cols=237  Identities=12%  Similarity=0.099  Sum_probs=166.7

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc--------------cEEeeeccCcceeEEEEe-------cceeEEE
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN--------------RYLGELSFRSEVKNVRLR-------RDRIVVV  111 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~v~~~~~~-------~~~~~~~  111 (359)
                      .....|+|++..++..+    .|..+.+|++...              .....+.....|..-+|-       |+..+++
T Consensus        52 ~kgckWSPDGSciL~~s----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLS----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hccceeCCCCceEEeec----ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            34567999999888888    7999999997431              111122245667777775       4555655


Q ss_pred             ---ecCeEEEEEcccceeeeeEeccC-----CCceeeeeecCCCccEEEecCCCCeeEEEEec-C-Cee--eEEe-----
Q 018248          112 ---LNQKVYVYNFTDLKLVDQIETVV-----NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-G-TKK--SKYI-----  174 (359)
Q Consensus       112 ---~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~-~~~--~~~~-----  174 (359)
                         .+.-|++||.-+|+....+....     ....+++|+|++..  |.+ | ....|++++. + +..  ....     
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq--lfa-G-ykrcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ--LFA-G-YKRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe--Eee-c-ccceEEEeeccCCCCCCcchhhhhccc
Confidence               89999999999998776664422     12357899999987  444 4 5789999665 2 211  1111     


Q ss_pred             ecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC-CCcEEEEEc
Q 018248          175 TAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD-KGTVHVFGL  252 (359)
Q Consensus       175 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~  252 (359)
                      .+..+-+.+++|+|-. +.++.++.... +-||.-....++..+-+  |.+.|+.+.|.++|+.|.+|.. |-.|..||+
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~~pl~llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGRRPLQLLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeecccce-eeeEecCCCCceeeecc--cCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence            2336678999999955 48999998888 88888778888887765  8899999999999999999874 567999999


Q ss_pred             cCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEE
Q 018248          253 KVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYY  332 (359)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  332 (359)
                      +......                       +.     +.+.          ....+...-....|+++.|++|+.||.|+
T Consensus       281 R~~~~pv-----------------------~~-----L~rh----------v~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  281 RYSRDPV-----------------------YA-----LERH----------VGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             hhccchh-----------------------hh-----hhhh----------ccCccceEEEecCCCCceeeccCCCccEE
Confidence            9765220                       00     0000          00011122244578999999999999999


Q ss_pred             EEEeCC
Q 018248          333 KCEFDP  338 (359)
Q Consensus       333 v~~~~~  338 (359)
                      +|+++.
T Consensus       323 vwdlk~  328 (406)
T KOG2919|consen  323 VWDLKD  328 (406)
T ss_pred             EEecCC
Confidence            999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=3.2e-17  Score=145.34  Aligned_cols=285  Identities=14%  Similarity=0.179  Sum_probs=188.9

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeeccc--CCCCceeEEEEeccCC--EEEEEecCCCCCCeEEEEE
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDR--NPRGGTQLVSMLFRSN--IICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~--~~~~~~~~~~~d~~i~iwd   82 (359)
                      +-..+.|+|-...++++. ...|+|||.+.++..  ..|..  .....|+.+.+....+  .+++++    .||.|+||+
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas----~dGvIRIwk 1139 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTAS----SDGVIRIWK 1139 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeec----cCceEEEec
Confidence            456788999999999998 677999999876554  33321  1234566666654333  344444    689999997


Q ss_pred             CCC-----ccEEeeec-cC-------cceeEEEEecce-eEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           83 DHE-----NRYLGELS-FR-------SEVKNVRLRRDR-IVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        83 ~~~-----~~~~~~~~-~~-------~~v~~~~~~~~~-~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      --.     .+.+.... ..       +.-.-+.|..+. .+++  .-..|+|||....+....+....+ ....+++++-
T Consensus      1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred             ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeecccc
Confidence            322     22332221 11       111234565544 3444  356899999988877777754322 2234445443


Q ss_pred             Cc-cEEEecCCCCeeEEEEecCCe----eeEEeeccccc--ccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEE--E
Q 018248          147 GP-MVMACPGLLKGQVRVEDYGTK----KSKYITAHASR--IASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQ--E  216 (359)
Q Consensus       147 ~~-~~l~~~g~~d~~v~~~~~~~~----~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~--~  216 (359)
                      .. .++++ |..||.|++++.+..    .+...+.|...  |..+.+.++|- .|++|+.+|. |++||++......  .
T Consensus      1219 ~~gn~i~A-GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1219 VHGNIIAA-GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             cCCceEEE-eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccce
Confidence            22 34554 889999999888763    45667788877  99999998776 4999999999 9999998852221  2


Q ss_pred             eecCCC-CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248          217 MRRGAE-RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS  295 (359)
Q Consensus       217 ~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (359)
                      +..+.. .+..+++..+++...+|+|+. +.|+||++....-..                          ++ ..+.+. 
T Consensus      1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~--------------------------~k-~n~~F~- 1347 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI--------------------------IK-YNPGFM- 1347 (1387)
T ss_pred             eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc--------------------------cc-cCcccc-
Confidence            222111 125899999999999999998 899999998765221                          00 011111 


Q ss_pred             cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .        -+.+.+.+++|+|-.-.|++|..|..|.||..+.
T Consensus      1348 ~--------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1348 G--------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             c--------CcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence            1        1236779999999988899999999999998765

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=1.1e-17  Score=127.60  Aligned_cols=197  Identities=9%  Similarity=0.107  Sum_probs=151.8

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeee---ecccCCCCceeEEEEecc--CCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR---DFDRNPRGGTQLVSMLFR--SNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~~d~~i   78 (359)
                      ++-+.|.|+.|.|++..+|+-.|+.|.+|+++....+...   ....+|......-+|+|.  ++.++..     .|+++
T Consensus       121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-----~d~tl  195 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-----SDSTL  195 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-----CCCcE
Confidence            4556899999999999999999999999999876553111   111234555666678774  3444444     37999


Q ss_pred             EEEECCCccEEeeec--cCcceeEEEEecceeEEE----ecCeEEEEEccc-ceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           79 MIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      ..||+++.+....+.  |...|.++.|+|+.+.++    .||.|++||.+. ..++..+.+|...++++.|+|..+.++|
T Consensus       196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL  275 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL  275 (370)
T ss_pred             EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence            999999988888887  889999999999987766    899999999954 5678889999999999999999887444


Q ss_pred             EecCCCCeeEEEEecCC------------------------------eeeEEeecccccccEEEEccCCc-EEEEEeCCC
Q 018248          152 ACPGLLKGQVRVEDYGT------------------------------KKSKYITAHASRIASIAMTLDGR-FVATASSKG  200 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~------------------------------~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg  200 (359)
                        +|+.|..|.++....                              ..+.++..|...|.+++||.-.. .+|+-+.||
T Consensus       276 --s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  276 --SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             --ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence              366788888764321                              12456778999999999997655 567889999


Q ss_pred             CeEEEEEc
Q 018248          201 TLIRVFNT  208 (359)
Q Consensus       201 ~~i~iwd~  208 (359)
                      . +.|=.+
T Consensus       354 R-viIs~V  360 (370)
T KOG1007|consen  354 R-VIISSV  360 (370)
T ss_pred             e-EEeecC
Confidence            8 777554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=1.5e-16  Score=121.60  Aligned_cols=241  Identities=11%  Similarity=0.147  Sum_probs=172.1

Q ss_pred             CCceEEEEEcc---CCCEEEEec-----CCceEEEEcC--CCcceeeeecccCCCCceeEEEEeccCCE---EEEEecCC
Q 018248            6 PITIHHLALNQ---DHGCFATGT-----ETGFRVYLSD--PYKPIMRRDFDRNPRGGTQLVSMLFRSNI---ICLVNSGP   72 (359)
Q Consensus         6 ~~~v~~~~~s~---~g~~l~~~~-----d~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~~~~~~~   72 (359)
                      +-+++++.|+.   ...+||.|+     .+.|.|..++  +++......|  .|..+++.+.|.|+...   -++++   
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f--d~~YP~tK~~wiPd~~g~~pdlLAT---  118 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF--DHPYPVTKLMWIPDSKGVYPDLLAT---  118 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC--CCCCCccceEecCCccccCcchhhc---
Confidence            34678899983   344788887     2567777665  4444544555  58899999999987642   23344   


Q ss_pred             CCCCeEEEEECCC--ccEE--eee------ccCcceeEEEEecce-eEEE---ecCeEEEEEcccce---eeeeEeccCC
Q 018248           73 HQSNKVMIWDDHE--NRYL--GEL------SFRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLK---LVDQIETVVN  135 (359)
Q Consensus        73 ~~d~~i~iwd~~~--~~~~--~~~------~~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~---~~~~~~~~~~  135 (359)
                       .+..+++|.+..  .+..  ..+      .+..+++++.|+.-. +++.   .|-+..|||++++.   ....+-.|..
T Consensus       119 -s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK  197 (364)
T KOG0290|consen  119 -SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK  197 (364)
T ss_pred             -ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence             247899999763  2211  111      256789999998754 3333   89999999998763   3566778999


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE-e---ecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCC
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-I---TAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~-~---~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~  210 (359)
                      +|..++|...+.. ++|+ .+.||.+++++++...-.+ +   .....+...++|+++ -+++|+-..|...|.|.|++.
T Consensus       198 EV~DIaf~~~s~~-~FAS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  198 EVYDIAFLKGSRD-VFAS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             ceeEEEeccCccc-eEEE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence            9999999986554 4555 4469999997766532222 2   222457788899874 458888777765599999986


Q ss_pred             -CcEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCC
Q 018248          211 -GSLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       211 -~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~  256 (359)
                       ..++.++++  |.+.|+.++|.|.. ..|+++++|..+.|||+.+..
T Consensus       276 P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  276 PCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             CCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence             456777877  88999999999954 589999999999999998765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=8.1e-18  Score=138.74  Aligned_cols=205  Identities=11%  Similarity=0.065  Sum_probs=164.1

Q ss_pred             EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcc
Q 018248           20 CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSE   97 (359)
Q Consensus        20 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~   97 (359)
                      .|+.++ ||.+.|.+-..   ...+... +|.+.+.+-.|++++..++.++    +||.|++|. ++|....++. ...+
T Consensus        77 ~~~i~s~DGkf~il~k~~---rVE~sv~-AH~~A~~~gRW~~dGtgLlt~G----EDG~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA---RVERSIS-AHAAAISSGRWSPDGAGLLTAG----EDGVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             eEEEEcCCceEEEecccc---hhhhhhh-hhhhhhhhcccCCCCceeeeec----CCceEEEEe-ccchHHHHHhhcCce
Confidence            455555 99999887552   2224444 7999999999999999999888    899999999 7777666665 7789


Q ss_pred             eeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee
Q 018248           98 VKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT  175 (359)
Q Consensus        98 v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~  175 (359)
                      |.|++|.|+...++  ..+.+.|=.+.....+-..+.|.+-+-++.|++..+-  +++ |++|-..++|+..+..+..-.
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l--I~s-gGED~kfKvWD~~G~~Lf~S~  224 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI--IAS-GGEDFRFKIWDAQGANLFTSA  224 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccc--eee-cCCceeEEeecccCcccccCC
Confidence            99999999876665  8888988888777677778889998888888877663  665 779999999999999999999


Q ss_pred             cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       176 ~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      .|..+|++++|+|+ +.++.++.. + ++            +... ..+.|..++||+||..+++|+..|.+.+=.+
T Consensus       225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEeee
Confidence            99999999999999 666666654 2 44            2211 4578999999999999999999998766444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.5e-16  Score=138.32  Aligned_cols=214  Identities=13%  Similarity=0.079  Sum_probs=144.7

Q ss_pred             CCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---e---cCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248           75 SNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---L---NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      +..|.+||..... .+.+. +...+....|+|+|+.++   .   +..|++||+.+++... +..........+|+|+++
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence            5799999976555 34444 777899999999998887   2   2479999998775422 222222334689999988


Q ss_pred             ccEEEecCCCCeeEEE--EecCCeeeEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCC-cEEEEeecCCCC
Q 018248          148 PMVMACPGLLKGQVRV--EDYGTKKSKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDG-SLLQEMRRGAER  223 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~-~~~~~~~~~~~~  223 (359)
                      .++++  ...+|.+.|  ++..+.....+..+...+..+.|+|||+.|+.++ .++. ..||++... .....+ .  +.
T Consensus       261 ~La~~--~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~  334 (429)
T PRK01742        261 RLAFA--SSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GR  334 (429)
T ss_pred             EEEEE--EecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CC
Confidence            74433  335666555  5556666677777777888999999999877655 5677 888876432 222223 2  22


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEE
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF  303 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (359)
                      .  ....|+|||++|+..+.++ +.+||+.++....                                  ....      
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~----------------------------------lt~~------  371 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV----------------------------------LSST------  371 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE----------------------------------ecCC------
Confidence            2  4578999999998887765 6669998765210                                  0000      


Q ss_pred             eecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCc
Q 018248          304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGE  343 (359)
Q Consensus       304 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~  343 (359)
                          .....++|+|||+.|+.++.+|...+|.+...+|..
T Consensus       372 ----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~  407 (429)
T PRK01742        372 ----FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF  407 (429)
T ss_pred             ----CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence                011347899999999999999998888765443433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.2e-16  Score=134.82  Aligned_cols=284  Identities=14%  Similarity=0.156  Sum_probs=197.2

Q ss_pred             EEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC---EEEEEecCCCCCCeEEEEECCCccE
Q 018248           12 LALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN---IICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus        12 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      -.||+|+++++...+..|.||...+++..  ..+. +|..++..+.+.+...   ++...+    .+|.|++||...+.+
T Consensus        22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~s----l~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCS----LDGTIRVWDWSDGEL   94 (792)
T ss_pred             cccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEe----cCccEEEecCCCcEE
Confidence            46899999999999999999999988766  3554 7899999888887765   233444    689999999888877


Q ss_pred             EeeeccCcceeEE-----------------------------------------------------------EEecceeE
Q 018248           89 LGELSFRSEVKNV-----------------------------------------------------------RLRRDRIV  109 (359)
Q Consensus        89 ~~~~~~~~~v~~~-----------------------------------------------------------~~~~~~~~  109 (359)
                      +..+....++..+                                                           ..++.+.+
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence            7766422222222                                                           22222222


Q ss_pred             EE--ecCeEEEEEcccceeeee-E---eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-----eeeEEeeccc
Q 018248          110 VV--LNQKVYVYNFTDLKLVDQ-I---ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-----KKSKYITAHA  178 (359)
Q Consensus       110 ~~--~d~~i~i~d~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-----~~~~~~~~~~  178 (359)
                      ..  .+..+.+|+......... .   ..|.-.+.+.+++|.++.  +|+ |..||.|.+|..-+     ...+.+.-|.
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa-~d~dGrI~vw~d~~~~~~~~t~t~lHWH~  251 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAA-GDSDGRILVWRDFGSSDDSETCTLLHWHH  251 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEE-eccCCcEEEEeccccccccccceEEEecc
Confidence            22  455666777654331100 0   123334577888888764  666 77899999987554     3456677899


Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      ..|++++|+++|.+|++|+..+. +.+|.+.+++. +-++.  -.++|..+.+|||+.+.+....|+.|.+-...+.+..
T Consensus       252 ~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~k-qfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k  327 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGKK-QFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK  327 (792)
T ss_pred             cccceeEEecCCceEeecccceE-EEEEeecCCCc-ccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence            99999999999999999999999 99999999883 22332  4579999999999999999999999999888654421


Q ss_pred             CCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          259 PGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ..                         +.+..+.  .+..    -+.+.+-.+.++++|-.+.++-.+..|.|..|++-.
T Consensus       328 ~t-------------------------Isgi~~~--~~~~----k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  328 ST-------------------------ISGIKPP--TPST----KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             hh-------------------------ccCccCC--Cccc----cccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence            10                         0010000  0000    011224456788888778888889999999998876


Q ss_pred             CC
Q 018248          339 MK  340 (359)
Q Consensus       339 ~~  340 (359)
                      +.
T Consensus       377 d~  378 (792)
T KOG1963|consen  377 DS  378 (792)
T ss_pred             cc
Confidence            54

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=4.1e-18  Score=141.14  Aligned_cols=244  Identities=15%  Similarity=0.175  Sum_probs=172.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCC------CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      .|.+.|..++|.|-...|++++ |+.+++|+++.      .......+|+ +|.++|-++++..++..++.++    .||
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg----~Dg  366 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGG----IDG  366 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeec----cCc
Confidence            5778899999999999999999 99999999932      1223345666 9999999999988888777666    799


Q ss_pred             eEEEEECCCc----------cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248           77 KVMIWDDHEN----------RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV  142 (359)
Q Consensus        77 ~i~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (359)
                      +|+.|++...          .....+. |.+.|+.+++++....++   .||+++.|+.....+ .++........-+.+
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence            9999965421          1222333 889999999998776666   799999999855544 333222221111222


Q ss_pred             ecCCCccEEEecCCCCeeEEEEecCC-eeeEEeec-------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITA-------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      ..-.......++...-+.-.+++... ..++.+..       ....+..+.++|.+.+.+++..|+. |+++|..+++++
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTGKIL  524 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccccccccc
Confidence            22211111111111111111122221 22222211       1245788899999999999999999 999999999999


Q ss_pred             EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          215 QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .....  |...++++++.|+|-+|++++.|+.+++|.+....
T Consensus       525 ~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  525 HSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             hheee--ccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            98887  77899999999999999999999999999998765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=2.2e-16  Score=125.53  Aligned_cols=234  Identities=14%  Similarity=0.185  Sum_probs=164.4

Q ss_pred             cCCEEEEEecCCCCCCeEEEEEC-CCccEEeee---c-cCcceeEEEEecce-eEEE---ecCeEEEEEcccc-------
Q 018248           61 RSNIICLVNSGPHQSNKVMIWDD-HENRYLGEL---S-FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDL-------  124 (359)
Q Consensus        61 ~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~~~~---~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~-------  124 (359)
                      ++.++++...+. ..|...+.-+ ++|+.-..+   . |.++|.+++|+|-+ ..++   .|.+|.||++..+       
T Consensus        43 NPkfiAvi~eas-gGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt  121 (472)
T KOG0303|consen   43 NPKFVAVIIEAS-GGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT  121 (472)
T ss_pred             CCceEEEEEecC-CCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc
Confidence            345555543322 1234444432 344443333   2 88999999999954 5555   8999999999543       


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLI  203 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i  203 (359)
                      +++..+.+|...+..++|+|...++++.+ | .|..|.+|+..... +..+. |...|.++.|+.||.+|++.+.|.. |
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~NVLlsa-g-~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-v  197 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAPNVLLSA-G-SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-V  197 (472)
T ss_pred             cceEEEeecceeEEEEeecccchhhHhhc-c-CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-e
Confidence            45677889999999999999988754443 4 59999999987644 44444 9999999999999999999999999 9


Q ss_pred             EEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248          204 RVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI  280 (359)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (359)
                      +|||.++++.+.+-..| ....-..+.|-.+|.++.||-   .+..+-+||..+-+..-                     
T Consensus       198 Rv~dpr~~~~v~e~~~h-eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~---------------------  255 (472)
T KOG0303|consen  198 RVIDPRRGTVVSEGVAH-EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI---------------------  255 (472)
T ss_pred             EEEcCCCCcEeeecccc-cCCCcceeEEeccCceeeeccccccccceeccCcccccCcc---------------------
Confidence            99999999999888653 233556677888898555543   46789999988755220                     


Q ss_pred             eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeCCCC
Q 018248          281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDPMK  340 (359)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~  340 (359)
                                  .+.      .+... +-|.---|.+|.+.|+.+|. ||.|+-|.+..+.
T Consensus       256 ------------~~~------elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  256 ------------ALQ------ELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ------------eeE------EeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence                        000      01111 12333456788888887776 9999999998753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=9.8e-16  Score=133.58  Aligned_cols=293  Identities=12%  Similarity=0.136  Sum_probs=193.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCC-Ccceee-eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP-YKPIMR-RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|.-.++|.++||+++++|+|. ||.|.+|.--. ...... ..+. =|..+|.+++|+.++.+++..+    ..+.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~~LlSGG----~E~VLv~  277 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGAYLLSGG----REGVLVL  277 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCceEeecc----cceEEEE
Confidence            4666689999999999999999 99999997532 111111 1221 3678999999999888877655    6799999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccC-----------CCceeeeeecCC
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVV-----------NPTGLCDVSQNA  146 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  146 (359)
                      |.+.+++...--+..++|..+.++||+.+.+   .|+.|.+....+......+.+..           .-...+++.|..
T Consensus       278 Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~  357 (792)
T KOG1963|consen  278 WQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT  357 (792)
T ss_pred             EeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence            9999998333333889999999999997766   99999999887666555544322           223456777744


Q ss_pred             CccEEEecCCCCeeEEEEecCC-eeeEEee-----------cccccccEEEEccCCcEEEEEeC--------CCC-eEEE
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT-KKSKYIT-----------AHASRIASIAMTLDGRFVATASS--------KGT-LIRV  205 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~-----------~~~~~i~~~~~s~~~~~l~~~~~--------dg~-~i~i  205 (359)
                      +.  ++. ....|.|.+++... ..+..+.           .+.-.++.++.+..|.+++|.-.        ||. .+++
T Consensus       358 ~~--~vl-n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  358 NS--LVL-NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             Cc--eee-cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            43  333 33688999966543 2222221           12335778888888999998742        222 2788


Q ss_pred             EEcCCCc----EEEEeecCCCCcceEEEEec-CCCC-EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248          206 FNTMDGS----LLQEMRRGAERAEIYSLAFS-SNAQ-WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA  279 (359)
Q Consensus       206 wd~~~~~----~~~~~~~~~~~~~i~~~~~s-~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (359)
                      |-.....    +...+... |...+...++. +... .+++++.||.++||-+...+....                  .
T Consensus       435 W~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k------------------~  495 (792)
T KOG1963|consen  435 WQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK------------------K  495 (792)
T ss_pred             EEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc------------------C
Confidence            9654332    22233322 44444444443 4333 889999999999999976553311                  0


Q ss_pred             eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ...+....            +  -..+..++.+++|+.|| .+++.+.|++|.+|+.+.
T Consensus       496 ~s~W~c~~------------i--~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  496 SSNWTCKA------------I--GSYHKTPITALCFSQDG-SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ccceEEee------------e--eccccCcccchhhcCCC-cEEEEecCCEEEEecCCC
Confidence            00000000            0  01234567889999998 556678888999998876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=1.3e-15  Score=120.26  Aligned_cols=214  Identities=15%  Similarity=0.239  Sum_probs=148.9

Q ss_pred             CeEEEEECCCccE-EeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           76 NKVMIWDDHENRY-LGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        76 ~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      ...+++....... -........|..+-|+..-..++   ..+.+++++++....+..+.- ..++  +++--+.+.+++
T Consensus        26 ~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~I--L~VrmNr~RLvV  102 (391)
T KOG2110|consen   26 DGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSI--LAVRMNRKRLVV  102 (391)
T ss_pred             CceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEec-CCce--EEEEEccceEEE
Confidence            4456676554332 11112344566666766655555   345789999887777776653 3334  444444444333


Q ss_pred             EecCCCCeeEEEEecC-CeeeEEee---cccccccEEEEccCCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          152 ACPGLLKGQVRVEDYG-TKKSKYIT---AHASRIASIAMTLDGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~-~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                      +.    ...|+|++.+ .+.+.++.   .+...+.++++++.+.+||.-+  ..|. |.+||..+-+.+..+..  |.+.
T Consensus       103 ~L----ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd-V~l~d~~nl~~v~~I~a--H~~~  175 (391)
T KOG2110|consen  103 CL----EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD-VVLFDTINLQPVNTINA--HKGP  175 (391)
T ss_pred             EE----cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce-EEEEEcccceeeeEEEe--cCCc
Confidence            32    4569996655 45555553   3445566666666777888643  4577 99999999999999986  8899


Q ss_pred             eEEEEecCCCCEEEEEcCCCc-EEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          226 IYSLAFSSNAQWLAASSDKGT-VHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      +-+++|+++|.+|||+++.|+ ||||.+.+++..                        ..|-++..              
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl------------------------~eFRRG~~--------------  217 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL------------------------YEFRRGTY--------------  217 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccEe------------------------eeeeCCce--------------
Confidence            999999999999999999998 899999988733                        12222211              


Q ss_pred             ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                        .-.|.+++|+||+++|++.+..++|++|+++..
T Consensus       218 --~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  218 --PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             --eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence              236789999999999999999999999999865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=2.2e-16  Score=137.29  Aligned_cols=211  Identities=13%  Similarity=0.057  Sum_probs=144.8

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecc
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRD  106 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  106 (359)
                      ..|.+||.+.....   .+. .|...+....|+|+++.+++++... .+..|++||+.+++........+....++|+||
T Consensus       184 ~~i~i~d~dg~~~~---~lt-~~~~~v~~p~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD  258 (429)
T PRK01742        184 YEVRVADYDGFNQF---IVN-RSSQPLMSPAWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD  258 (429)
T ss_pred             EEEEEECCCCCCce---Eec-cCCCccccceEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence            57899998754432   222 4567788999999999999887543 346899999988765433333444557899999


Q ss_pred             eeEEE----ecCeE--EEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC--CeeeEEeeccc
Q 018248          107 RIVVV----LNQKV--YVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG--TKKSKYITAHA  178 (359)
Q Consensus       107 ~~~~~----~d~~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~~  178 (359)
                      |..++    .++.+  ++||+.+++ ...+..+...+....|+|+++.++++  +..++...+|..+  +.....+ .+.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~--s~~~g~~~I~~~~~~~~~~~~l-~~~  334 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFT--SDRSGSPQVYRMSASGGGASLV-GGR  334 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEE--ECCCCCceEEEEECCCCCeEEe-cCC
Confidence            98776    36654  455665554 34455555566778999998874443  3356677776543  3333333 333


Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .  ....|+|||++|+..+.++  +.+||+.+++.......  .  ...++.|+|||++|+.++.++.+.+|.+..
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~--~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST--F--LDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC--C--CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            3  4678999999998887765  67799988876533322  1  235678999999999999999888888753

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=1.7e-14  Score=126.43  Aligned_cols=313  Identities=17%  Similarity=0.279  Sum_probs=212.6

Q ss_pred             ceEEEEE-ccCCC-EEEE-ec-CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            8 TIHHLAL-NQDHG-CFAT-GT-ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         8 ~v~~~~~-s~~g~-~l~~-~~-d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .+..+.+ ++++. .++. +. |+.+.+|+... ....  ..+. +|...+..+++.+++..++..+.   .|+.+++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~  184 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI--RTLE-GHSESVTSLAFSPDGKLLASGSS---LDGTIKLWD  184 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE--EEEe-cCcccEEEEEECCCCCEEEecCC---CCCceEEEE
Confidence            5667777 88888 4444 34 88999999986 3333  2232 68899999999988885554431   289999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeee-eEeccCCCceeeeeecCCCccEEEecCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVD-QIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +.++..+..+. |...|.+++|+|++. .++   .|+.|++||...+..+. .+..+.... ...+++++.  ++++ ++
T Consensus       185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~-~~  260 (466)
T COG2319         185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS--LLAS-GS  260 (466)
T ss_pred             cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC--EEEE-ec
Confidence            99888888887 899999999999986 444   78999999988777777 577776664 447888883  3444 66


Q ss_pred             CCeeEEEEecCCee--eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          157 LKGQVRVEDYGTKK--SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       157 ~d~~v~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      .++.+++|+.....  ...+..|...+.++.|+|++..+++++.|+. +.+||..+...........|...+..+.|.++
T Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
T COG2319         261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD  339 (466)
T ss_pred             CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEECCC
Confidence            89999998876433  3444678899999999998888888999988 99999988877666651125557899999434


Q ss_pred             CCEEEEE-cCCCcEEEEEccCCCCCCCC--Cc-cccCCCCCccCCCCCc-eeeeeEeeeecceEEecccceeEEeecC--
Q 018248          235 AQWLAAS-SDKGTVHVFGLKVDSGSPGT--SK-LHSASEPNLSSKNSSA-ISSFRFIRGVLPKYFSSKWSMAQFRLPE--  307 (359)
Q Consensus       235 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  307 (359)
                      +..++.+ ..|+.+.+|++.........  .. .....+.+ . ..... ...-.     ....+.............  
T Consensus       340 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  412 (466)
T COG2319         340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGSTDG-----TVRLWDLSTGSLLRNLDGHT  412 (466)
T ss_pred             CCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEecCCC-----ceEEEecccCeeeeeccCCC
Confidence            3555555 67889999999887611100  00 11111111 1 00000 00000     001111111111111111  


Q ss_pred             CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          308 NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       308 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ..+..+.+++++..++.++.++.+.+|+...
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            4778889999999999999999999998865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=3.3e-15  Score=129.61  Aligned_cols=178  Identities=11%  Similarity=0.060  Sum_probs=120.7

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
                      ...|.++|...........+...+...+|+|||+.++      .+..|++|++.+++.... ...........|+|+++.
T Consensus       178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence            3579999977655444444677899999999998877      245799999987754322 222333456899999987


Q ss_pred             cEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC-CC-eEEEEEcCCCcEEEEeecCCCCcce
Q 018248          149 MVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK-GT-LIRVFNTMDGSLLQEMRRGAERAEI  226 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~i  226 (359)
                      ++++.....+..|++|+..+.....+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+..  .....
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~  333 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQN  333 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCc
Confidence            554432222335777888776666666666678899999999988777654 33 1455566666543 3332  22345


Q ss_pred             EEEEecCCCCEEEEEcCC---CcEEEEEccCCC
Q 018248          227 YSLAFSSNAQWLAASSDK---GTVHVFGLKVDS  256 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~  256 (359)
                      ....|+|||++|+..+.+   ..|.+||+.+++
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            678999999998876543   358888887765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.5e-17  Score=131.99  Aligned_cols=196  Identities=18%  Similarity=0.254  Sum_probs=146.1

Q ss_pred             eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee
Q 018248           54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ  129 (359)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~  129 (359)
                      .++++..++..+++.+    .||++|+|+..+...+.... |..+|.++.|+||+++++   .| ..+||+.+++..+..
T Consensus       148 k~vaf~~~gs~latgg----~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG----TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeecc----ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence            5677777777777766    79999999977776666555 999999999999999998   55 999999999966665


Q ss_pred             EeccC--CCceeeeeecCC--CccEEEecCCCCeeEEEEecCC----ee--eEEeecccccccEEEEccCCcEEEEEeCC
Q 018248          130 IETVV--NPTGLCDVSQNA--GPMVMACPGLLKGQVRVEDYGT----KK--SKYITAHASRIASIAMTLDGRFVATASSK  199 (359)
Q Consensus       130 ~~~~~--~~~~~~~~~~~~--~~~~l~~~g~~d~~v~~~~~~~----~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  199 (359)
                      .....  .....+.|+.++  +.+++++.-...+.|+.++...    ..  .+........|.+++.+++|+++|.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            54322  223456666655  3344444333344444433221    11  11222234579999999999999999999


Q ss_pred             CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          200 GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       200 g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |. |.|++..+.+.++..+ +.|...|+.+.|+||.+++++.+.+....|..+....
T Consensus       303 Gs-Vai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  303 GS-VAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             Cc-EEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence            99 9999999988887776 4488899999999999999999999999999887633

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.76  E-value=1.6e-16  Score=131.15  Aligned_cols=224  Identities=13%  Similarity=0.184  Sum_probs=139.5

Q ss_pred             eEEEEEccCCCEEEEecCCceEEEEcCCCcc----eeeeecccCCCCceeEEEEec----cCCEEEEEecCCCCCCeEEE
Q 018248            9 IHHLALNQDHGCFATGTETGFRVYLSDPYKP----IMRRDFDRNPRGGTQLVSMLF----RSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~~~----~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +....++-.|++|+..-...+.+|+...+..    +....+.   .....+-++..    ....-++++-   .-|.|.+
T Consensus       126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~---gt~P~cHdfn~~~a~~~g~dllIGf---~tGqvq~  199 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK---GTSPTCHDFNSFTATPKGLDLLIGF---TTGQVQL  199 (636)
T ss_pred             eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc---CCCCceecccccccCCCCcceEEee---ccCceEE
Confidence            4455555677788776667788888774221    1111221   11112222210    1112222332   2388888


Q ss_pred             EECCCccEEeeec-----cCcceeEEEEecc--eeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           81 WDDHENRYLGELS-----FRSEVKNVRLRRD--RIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        81 wd~~~~~~~~~~~-----~~~~v~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      .|....+..+.+.     .+..|+++.|-|.  +.+++  .+|.+++||..-      ......  ......++++.+.+
T Consensus       200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~--p~~~~~k~~~~f~i  271 (636)
T KOG2394|consen  200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATA--PSYQALKDGDQFAI  271 (636)
T ss_pred             ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCC--CcccccCCCCeeEE
Confidence            8866533222222     3478999999885  45555  999999999611      001111  11122233433222


Q ss_pred             EecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          152 ACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      .. +       ....+..++..+.-.++.|+..+|+|||++||+.+.||. ++|||..+.+++..++.  .-+...|++|
T Consensus       272 ~t-~-------ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW  340 (636)
T KOG2394|consen  272 LT-S-------KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW  340 (636)
T ss_pred             ee-e-------eccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence            11 0       011122455555556679999999999999999999999 99999988887766665  4468999999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ||||++|++|++|..|.||.+..++.
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erRV  366 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERRV  366 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccceE
Confidence            99999999999999999999988763

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=2.7e-15  Score=124.71  Aligned_cols=275  Identities=11%  Similarity=0.140  Sum_probs=182.1

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEE-----ecCCC-CCCeEEE
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV-----NSGPH-QSNKVMI   80 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-----~~~~~-~d~~i~i   80 (359)
                      .+....++|++|+++|.+.+..++|++...........     ...+..+.++|.++++..-     ..... ....+.+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~-----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v  109 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE-----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV  109 (566)
T ss_pred             CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec-----cceeeeeeecccccccccccccccccCCCCCCCceee
Confidence            34678899999999999999999999998776333322     2366777777777665432     10000 2356889


Q ss_pred             EECCCccEEeeeccC-cceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec---
Q 018248           81 WDDHENRYLGELSFR-SEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP---  154 (359)
Q Consensus        81 wd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---  154 (359)
                      |+++++.....+... ..-++..|++|..+.+  ..+.+++|++.+.+.+.. ..+...+....++|.+....+|+-   
T Consensus       110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence            999997666666522 2226899999998888  889999999865332211 223444566666666444334321   


Q ss_pred             -CCCCeeEEEEecC--------------------------C-------------------------------eeeEEeec
Q 018248          155 -GLLKGQVRVEDYG--------------------------T-------------------------------KKSKYITA  176 (359)
Q Consensus       155 -g~~d~~v~~~~~~--------------------------~-------------------------------~~~~~~~~  176 (359)
                       ++.-..|+||...                          +                               .....--.
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~  268 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL  268 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence             1112233332221                          1                               11111112


Q ss_pred             ccccccEEEEccCCcEEEEE--eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC---CCcEEEEE
Q 018248          177 HASRIASIAMTLDGRFVATA--SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD---KGTVHVFG  251 (359)
Q Consensus       177 ~~~~i~~~~~s~~~~~l~~~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~  251 (359)
                      ..++|.++.|+|+++.++++  -.-.. +.|||+ .+..+..+..    ++-+++-|+|.|++|+.++-   .|.+-|||
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~e----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFPE----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCCC----CCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            36799999999999866543  45566 999996 5777877753    57789999999999988875   47899999


Q ss_pred             ccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec----
Q 018248          252 LKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL----  327 (359)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----  327 (359)
                      +.+.+...                                + +           ....-+.+.|+|||.++++++.    
T Consensus       343 v~n~K~i~--------------------------------~-~-----------~a~~tt~~eW~PdGe~flTATTaPRl  378 (566)
T KOG2315|consen  343 VPNRKLIA--------------------------------K-F-----------KAANTTVFEWSPDGEYFLTATTAPRL  378 (566)
T ss_pred             ccchhhcc--------------------------------c-c-----------ccCCceEEEEcCCCcEEEEEeccccE
Confidence            99966321                                0 0           1112356899999999999886    


Q ss_pred             --CCeEEEEEeC
Q 018248          328 --DGSYYKCEFD  337 (359)
Q Consensus       328 --dg~i~v~~~~  337 (359)
                        |..++||++.
T Consensus       379 rvdNg~Kiwhyt  390 (566)
T KOG2315|consen  379 RVDNGIKIWHYT  390 (566)
T ss_pred             EecCCeEEEEec
Confidence              7889999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=1.6e-16  Score=126.39  Aligned_cols=222  Identities=13%  Similarity=0.115  Sum_probs=158.7

Q ss_pred             CCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcce-----eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248            4 PDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPI-----MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus         4 ~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      .|+.+|..++|+| +...||+|+ |.+|.||.+-.....     ....+. ||...|..++|+|....+++.++   .|+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag---~Dn  154 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAG---SDN  154 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhcc---CCc
Confidence            5899999999999 556778999 999999998643221     123444 99999999999998766655554   589


Q ss_pred             eEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCce-eeeeecCCCccEEE
Q 018248           77 KVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTG-LCDVSQNAGPMVMA  152 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  152 (359)
                      +|.+||+.+|+.+.++.|++.|.++.|+.+|.+++   .|..|+|||.++++.+..-..|.+.-. -+.|-.+++   ++
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~---i~  231 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK---IF  231 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc---ee
Confidence            99999999999999999999999999999999998   899999999999999888766655332 233444444   44


Q ss_pred             ecCC---CCeeEEEEecCC--ee--eEEeecccccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEE-EEeecCCCC
Q 018248          153 CPGL---LKGQVRVEDYGT--KK--SKYITAHASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLL-QEMRRGAER  223 (359)
Q Consensus       153 ~~g~---~d~~v~~~~~~~--~~--~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~-~~~~~~~~~  223 (359)
                      ++|.   .+..+.+|+...  .+  ...+. ..+.|.---|.||.+.+..+ -.|+. |+-|.+.+..+. +-+..-...
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecccccC
Confidence            4343   467778887654  11  22333 23455556678888876554 47888 999998766532 222111123


Q ss_pred             cceEEEEecCC
Q 018248          224 AEIYSLAFSSN  234 (359)
Q Consensus       224 ~~i~~~~~s~~  234 (359)
                      .+-..+.|-|.
T Consensus       310 epQRG~g~mPK  320 (472)
T KOG0303|consen  310 EPQRGMGFMPK  320 (472)
T ss_pred             Ccccccccccc
Confidence            35556666664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=2.4e-15  Score=131.31  Aligned_cols=175  Identities=14%  Similarity=0.080  Sum_probs=122.2

Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      ..|.++|...........+...+...+|+|||+.++      .+..|++||+.+++.. .+......+...+|+|+++.+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            589999975544433334778899999999998777      2468999999877653 344445556678999999875


Q ss_pred             EEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CC--CeEEEEEcCCCcEEEEeecCCCCcce
Q 018248          150 VMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KG--TLIRVFNTMDGSLLQEMRRGAERAEI  226 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~~i~iwd~~~~~~~~~~~~~~~~~~i  226 (359)
                      ++.........|++++..+.....+..+........|+|||+.|+..+. +|  . |+++|+.+++.. .+..  +...+
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~~~  336 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGGRY  336 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCCcc
Confidence            4443222233466677777777777777777788999999998887764 33  5 888887666544 3332  23456


Q ss_pred             EEEEecCCCCEEEEEcCC---CcEEEEEccCC
Q 018248          227 YSLAFSSNAQWLAASSDK---GTVHVFGLKVD  255 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~  255 (359)
                      ....|+|||+.|+..+.+   ..|.+||+..+
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            778999999999876543   25777787544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.3e-17  Score=132.38  Aligned_cols=285  Identities=13%  Similarity=0.124  Sum_probs=201.7

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|++.|..+.|+..|..|++|+ |..|.+||......+  ..+..||...|....|.|...-.-+++++  .||.+++=
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s--~dgqvr~s  214 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSS--RDGQVRVS  214 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceecc--ccCceeee
Confidence            47999999999999999999999 999999999987666  44555899998888888766544444444  68999988


Q ss_pred             ECCC-ccEE---eeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEec---cCC-Cc--eeeeeecCCC
Q 018248           82 DDHE-NRYL---GELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIET---VVN-PT--GLCDVSQNAG  147 (359)
Q Consensus        82 d~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~---~~~-~~--~~~~~~~~~~  147 (359)
                      .+.. +.+.   +..+|.++|..++.-|+...-+    .|+.+.-+|++...+...+..   +.. .|  ..++..|...
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            7543 3333   2223999999999988765443    899999999977655444322   111 13  3445555544


Q ss_pred             ccEEEecCCCCeeEEEEecCC-------eeeEEee------cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC--C-
Q 018248          148 PMVMACPGLLKGQVRVEDYGT-------KKSKYIT------AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD--G-  211 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~-------~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~--~-  211 (359)
                      + .+++ |..|-.+++++.+.       ..+..+.      ...-.|++++|+.++.-|.++..|-. |++|.-..  | 
T Consensus       295 ~-~faV-gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~G~  371 (559)
T KOG1334|consen  295 N-EFAV-GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGDGS  371 (559)
T ss_pred             c-cccc-CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEeccccccCC
Confidence            3 2444 66788888866543       1122222      22346999999988777767777777 99995332  2 


Q ss_pred             ---------cEEEE-eecCCCCcceEEEEe-cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248          212 ---------SLLQE-MRRGAERAEIYSLAF-SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI  280 (359)
Q Consensus       212 ---------~~~~~-~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (359)
                               ..++. +++|.....|..+-| -|...++++|++-|.|.||+-.+++                        
T Consensus       372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e------------------------  427 (559)
T KOG1334|consen  372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE------------------------  427 (559)
T ss_pred             CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH------------------------
Confidence                     22333 666555556777765 5888999999999999999999877                        


Q ss_pred             eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                               +.+++...         ...|+++.=+|--..||+.|-|--|+||.-
T Consensus       428 ---------ii~~MegD---------r~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  428 ---------IIRFMEGD---------RHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             ---------HHHHhhcc---------cceEeccCCCCCCchhhccCCccceeeecC
Confidence                     22233332         347888888998899999999999999954

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.2e-15  Score=118.77  Aligned_cols=237  Identities=16%  Similarity=0.195  Sum_probs=158.8

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      -.+..++|++.-..+|++. |..|++|+-........+..   -...+.+++|.|.....+.++    ..+-|.+|....
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~---sQrnvtclawRPlsaselavg----Cr~gIciW~~s~  171 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSV---SQRNVTCLAWRPLSASELAVG----CRAGICIWSDSR  171 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecch---hhcceeEEEeccCCcceeeee----ecceeEEEEcCc
Confidence            4577899999777788888 99999999876333333332   267899999999876666666    348899997542


Q ss_pred             c----cE--------Eeeec--cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248           86 N----RY--------LGELS--FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        86 ~----~~--------~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      .    ..        .+.++  ...+|++++|++||..++    .+..|.|||..+++.+.......+.+..+.|+|+++
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence            1    11        11222  236899999999998887    889999999988877665544556678899999999


Q ss_pred             ccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC----Cc----------
Q 018248          148 PMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD----GS----------  212 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~----~~----------  212 (359)
                      .++.++   -|+..++|.... ..........+.|...+|+|+|++|..+.....  ++|.+.-    ..          
T Consensus       252 ~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~  326 (445)
T KOG2139|consen  252 VLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRV  326 (445)
T ss_pred             EEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceee
Confidence            744443   589999995443 222333334558999999999997765554332  4444321    10          


Q ss_pred             -EEEEee-----cC--CCCcceEEEEecCCCCEEEEEcCCC--------cEEEEEccCC
Q 018248          213 -LLQEMR-----RG--AERAEIYSLAFSSNAQWLAASSDKG--------TVHVFGLKVD  255 (359)
Q Consensus       213 -~~~~~~-----~~--~~~~~i~~~~~s~~~~~l~~~~~dg--------~i~iw~~~~~  255 (359)
                       ++..+.     .+  .-.+++.+++|.|.|.+|++.-..+        .|.+||.+..
T Consensus       327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence             011110     00  0135788999999999999865433        3555665543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=4.9e-17  Score=134.85  Aligned_cols=241  Identities=10%  Similarity=0.051  Sum_probs=177.4

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--------ccEEeeec-cCcceeEEEEecceeEEE---ecCe
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--------NRYLGELS-FRSEVKNVRLRRDRIVVV---LNQK  115 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~  115 (359)
                      .|...+..+.+.+....++.++    .|+++++|++..        -+++.++. |.++|.|+++.+++..+.   .||+
T Consensus       292 s~~d~ir~l~~~~sep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEec----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            5778888888888888888888    899999999832        25677777 999999999999998888   8999


Q ss_pred             EEEEEccc----------ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc--cccccE
Q 018248          116 VYVYNFTD----------LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH--ASRIAS  183 (359)
Q Consensus       116 i~i~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~--~~~i~~  183 (359)
                      |+.|++..          ......+.+|...++.++++...+.  |++ ++.||+++.|........++...  .+...+
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~--Lls-cs~DgTvr~w~~~~~~~~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR--LLS-CSSDGTVRLWEPTEESPCTFGEPKEHGYPLS  444 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc--eee-ecCCceEEeeccCCcCccccCCccccCCcce
Confidence            99997631          1234566789999999999998887  444 55799999999887655444332  233455


Q ss_pred             EEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-----cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          184 IAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAER-----AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       184 ~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      +.+-.... ..++...-+. -.++++.....+..+.....+     ..+..+.++|.+.+.+++..|+.|+++|..++..
T Consensus       445 vd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             EeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            55543331 2222223333 345555555555555432222     3577889999999999999999999999999873


Q ss_pred             CCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          258 SPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ..                                          ....+...++++++.|+|.+|++++.||.+++|+++
T Consensus       524 l~------------------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  524 LH------------------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             ch------------------------------------------heeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence            31                                          123345678999999999999999999999999997


Q ss_pred             C
Q 018248          338 P  338 (359)
Q Consensus       338 ~  338 (359)
                      .
T Consensus       562 ~  562 (577)
T KOG0642|consen  562 V  562 (577)
T ss_pred             c
Confidence            6

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=4.1e-16  Score=135.08  Aligned_cols=242  Identities=12%  Similarity=0.132  Sum_probs=171.2

Q ss_pred             CCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcceeee--e-cccCCCCceeEEEEeccCCE--EEEEecCCCCCCe
Q 018248            5 DPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIMRR--D-FDRNPRGGTQLVSMLFRSNI--ICLVNSGPHQSNK   77 (359)
Q Consensus         5 h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~~--~~~~~~~~~~d~~   77 (359)
                      .+.+|.|+.|+|.. .+++.|. +|.|.+||+..+......  . ....|..++..+.|..+...  ++.++    .||.
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s----sDG~  316 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS----SDGS  316 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe----cCCc
Confidence            35789999999955 4556666 999999999866552111  1 11257788888888765544  55555    6899


Q ss_pred             EEEEECCCccE-E-----eee-------ccCcceeEEEEecce--eEEE--ecCeEEEEEcccce--------eeeeEec
Q 018248           78 VMIWDDHENRY-L-----GEL-------SFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTDLK--------LVDQIET  132 (359)
Q Consensus        78 i~iwd~~~~~~-~-----~~~-------~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~~~--------~~~~~~~  132 (359)
                      |..|+++.-.. .     ...       .....++++.|.+..  .+++  .+|.|..-+-...+        ....+..
T Consensus       317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~  396 (555)
T KOG1587|consen  317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT  396 (555)
T ss_pred             EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence            99998654321 1     111       122457888887643  3444  78888774432221        2334556


Q ss_pred             cCCCceeeeeecCCCccEEEecCCCCeeEEEEecC--CeeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcC
Q 018248          133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG--TKKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTM  209 (359)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~  209 (359)
                      |.+++..+.++|-...+++.+ |  |.+++||...  ..++..+..+...+++++|||... .++++..||. |.+||+.
T Consensus       397 h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl  472 (555)
T KOG1587|consen  397 HIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLL  472 (555)
T ss_pred             cCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhh
Confidence            788899999999888766665 4  8999998876  356666777778899999999765 7788888999 9999987


Q ss_pred             CCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          210 DGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       210 ~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ...  ++.....  +....+.+.|+++|+.|++|...|++++|++...-
T Consensus       473 ~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  473 QDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL  519 (555)
T ss_pred             ccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence            543  3444433  34567788899999999999999999999997543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=7.2e-15  Score=109.78  Aligned_cols=226  Identities=14%  Similarity=0.153  Sum_probs=159.6

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCC---------CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDP---------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      .|.+-+++|.+++|++|. +|.|.++.++.         ++... ... ++|.+++..+++.  .. +++++    .||.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~i-v~e-qahdgpiy~~~f~--d~-~Lls~----gdG~   82 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKI-VPE-QAHDGPIYYLAFH--DD-FLLSG----GDGL   82 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcce-eec-cccCCCeeeeeee--hh-heeec----cCce
Confidence            466778999999999999 99999998852         22222 222 3899999998876  33 33444    3799


Q ss_pred             EEEEECCCccE------Eeeec---c-----CcceeEEEEecceeE--EE-ecCeEEEEEcccceeeeeEeccCCCceee
Q 018248           78 VMIWDDHENRY------LGELS---F-----RSEVKNVRLRRDRIV--VV-LNQKVYVYNFTDLKLVDQIETVVNPTGLC  140 (359)
Q Consensus        78 i~iwd~~~~~~------~~~~~---~-----~~~v~~~~~~~~~~~--~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (359)
                      |+-|.......      +.+..   +     -.+|+++...|..+-  ++ .|+.++.||+++|+....+++|..-+.++
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV  162 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence            99987543211      11111   1     246788888875443  33 99999999999999999999999988877


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeec---------c-cccccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITA---------H-ASRIASIAMTLDGRFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~---------~-~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~  209 (359)
                      ........  +.+ |++||++++|+... +.++.+..         | ...|.+++.  +..+|++|+...  +.+|+++
T Consensus       163 v~R~~~~q--ils-G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~--lslwhLr  235 (325)
T KOG0649|consen  163 VGRNANGQ--ILS-GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK--LSLWHLR  235 (325)
T ss_pred             eecccCcc--eee-cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc--eeEEecc
Confidence            66333333  554 88999999988765 44444432         1 123455554  556888776554  8999999


Q ss_pred             CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ..++...|.   -++.+..+.|-  .+.+++++..+.|.-|.+..
T Consensus       236 sse~t~vfp---ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  236 SSESTCVFP---IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             CCCceEEEe---cccceeEeeee--cceEEEeccccceeeeeecc
Confidence            999998887   35688889995  44777778777888887764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=6.8e-15  Score=109.91  Aligned_cols=231  Identities=13%  Similarity=0.163  Sum_probs=163.4

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcc------eeeeecccCC-----CCceeEEEEeccCCEEEEEecC
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKP------IMRRDFDRNP-----RGGTQLVSMLFRSNIICLVNSG   71 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~------~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~   71 (359)
                      |.|..+|+.++|.  ..+|++|+||.|+-|..+...+      ..+...+ -|     -..|..+.+.|..+.+++++  
T Consensus        59 qahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P-~~~~~~evPeINam~ldP~enSi~~Ag--  133 (325)
T KOG0649|consen   59 QAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIP-MQVDAVEVPEINAMWLDPSENSILFAG--  133 (325)
T ss_pred             cccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCc-cccCcccCCccceeEeccCCCcEEEec--
Confidence            7899999999999  4588888999999998764322      1111110 12     34577888888899999988  


Q ss_pred             CCCCCeEEEEECCCccEEeeec-cCcceeEEEE-ecceeEEE--ecCeEEEEEcccceeeeeEeccCCC--------cee
Q 018248           72 PHQSNKVMIWDDHENRYLGELS-FRSEVKNVRL-RRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNP--------TGL  139 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~-~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~  139 (359)
                        .|+.+.-||+++|+..++++ |.+.|.++.- +.+++++.  .||++++||.++++.+..+....++        -++
T Consensus       134 --GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi  211 (325)
T KOG0649|consen  134 --GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI  211 (325)
T ss_pred             --CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence              58999999999999999999 9999999998 67778877  9999999999999999888654332        123


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      .++.-+.+  .++|.|  ...+.+|..+.........-..++..+.|..  ..+++++.... |.-|.+ +|........
T Consensus       212 gala~~ed--WlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~-v~~~~l-~Gvl~a~ip~  283 (325)
T KOG0649|consen  212 GALAVNED--WLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNH-VQSYTL-NGVLQANIPV  283 (325)
T ss_pred             EEEeccCc--eEEecC--CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccc-eeeeee-ccEEEEeccC
Confidence            44444444  477633  4578888887644444334456677778854  45667777767 899975 5665555555


Q ss_pred             CCCCcceEEEEecCC-CCEEEEEcCCCcEEEE
Q 018248          220 GAERAEIYSLAFSSN-AQWLAASSDKGTVHVF  250 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw  250 (359)
                      ..  ...++..|+.. -++|..++....+.|+
T Consensus       284 ~s--~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  284 ES--TACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             Cc--cceeeecccCCceEEEEecccceeeeee
Confidence            32  34566666533 3456666777777765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=8.4e-16  Score=117.58  Aligned_cols=235  Identities=14%  Similarity=0.162  Sum_probs=157.1

Q ss_pred             CCCCceEEEEEccCCC-----EEEEecCCceEEEEcCCCcc--eeeeecc----cCCCCceeEEEEec-cCCEEEEEecC
Q 018248            4 PDPITIHHLALNQDHG-----CFATGTETGFRVYLSDPYKP--IMRRDFD----RNPRGGTQLVSMLF-RSNIICLVNSG   71 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~-----~l~~~~d~~i~iw~~~~~~~--~~~~~~~----~~h~~~v~~~~~~~-~~~~~~~~~~~   71 (359)
                      .|+-+++.+.|.|+..     +||+ ++..+|+|.+...+.  .....+.    ..+..+++...|.. +++++.+.+  
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS--  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS--  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec--
Confidence            5778899999999873     3444 456789999874222  1111111    13455666666553 456666666  


Q ss_pred             CCCCCeEEEEECCCccE---E-eeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEecc---CCCceee
Q 018248           72 PHQSNKVMIWDDHENRY---L-GELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETV---VNPTGLC  140 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~---~-~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~  140 (359)
                        -|-+..|||++++..   . +-+.|..+|.+++|...+.-++    .||.++++|++..+--..+...   ..+.--+
T Consensus       171 --iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  171 --IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL  248 (364)
T ss_pred             --ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence              789999999998733   2 2334999999999999765443    9999999999876544443222   2233334


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecC--CeeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCc-----
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYG--TKKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGS-----  212 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~-----  212 (359)
                      +|++... .++|+-+.....|.+-+.+  ..++..++.|++.|+.++|.|.. ..|+++++|.. +.+||+.+.-     
T Consensus       249 swnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~~  326 (364)
T KOG0290|consen  249 SWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENGE  326 (364)
T ss_pred             ccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCCC
Confidence            4544333 3455545555667774443  36788899999999999999965 58999999998 9999986532     


Q ss_pred             -EEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEE
Q 018248          213 -LLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHV  249 (359)
Q Consensus       213 -~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i  249 (359)
                       ++..+.   -.+.|+.+.|++ .+.+++.+... .+.|
T Consensus       327 dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  327 DPILAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             Cchhhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence             222333   246899999996 56678776543 3444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.7e-15  Score=130.77  Aligned_cols=177  Identities=14%  Similarity=0.095  Sum_probs=120.8

Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      ..|.+||...........+...+.+.+|+|+++.++      ....|++||+.+++... +...........|+|+++.+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            579999976544444334777899999999998777      23479999997776533 32233344567899999875


Q ss_pred             EEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CCC-eEEEEEcCCCcEEEEeecCCCCcceE
Q 018248          150 VMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KGT-LIRVFNTMDGSLLQEMRRGAERAEIY  227 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~-~i~iwd~~~~~~~~~~~~~~~~~~i~  227 (359)
                      ++......+..|++++..+.....+..+......++|+|||+.|+..+. +|. .|+++|+.+++......   +.....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~---~g~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF---QGNYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec---CCCCcc
Confidence            5443222234688888877777777766666678999999998887764 333 16666776665433222   223445


Q ss_pred             EEEecCCCCEEEEEcCCC---cEEEEEccCCC
Q 018248          228 SLAFSSNAQWLAASSDKG---TVHVFGLKVDS  256 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~  256 (359)
                      ..+|||||++|+..+.++   .|.+||+.+++
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            789999999998765433   58999987765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.72  E-value=3.3e-15  Score=115.85  Aligned_cols=204  Identities=17%  Similarity=0.141  Sum_probs=149.6

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ..+|+|.+|++|++.+|++. +..+.||.....+ -....++. .|...+..++|.+..+.++.++    .|..-++|..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs----~drnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCS----HDRNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEcc----CCCCcccccc
Confidence            57899999999999999999 7899999988766 34445565 7899999999999999998888    7889999986


Q ss_pred             CC-ccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           84 HE-NRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        84 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      .. ++-.                                    +...+..+.....++.|+|..+.  +|+ |+....|.
T Consensus        85 ~~~~~Wk------------------------------------ptlvLlRiNrAAt~V~WsP~enk--FAV-gSgar~is  125 (361)
T KOG1523|consen   85 PSGGTWK------------------------------------PTLVLLRINRAATCVKWSPKENK--FAV-GSGARLIS  125 (361)
T ss_pred             CCCCeec------------------------------------cceeEEEeccceeeEeecCcCce--EEe-ccCccEEE
Confidence            32 2211                                    11122223344566677776665  444 44556666


Q ss_pred             EEecCCeee-----EEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC------------------CcEEEEeec
Q 018248          163 VEDYGTKKS-----KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD------------------GSLLQEMRR  219 (359)
Q Consensus       163 ~~~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~------------------~~~~~~~~~  219 (359)
                      |+-.+.+.-     +.-+.+...|+++.|+|++-+|++|+.|+. .++|...-                  |+++.++..
T Consensus       126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~  204 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS  204 (361)
T ss_pred             EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence            644443221     122456788999999999999999999999 99997421                  223333422


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                        ..+.+..+.|+|+|..|+-.+.|.++.+-|...+.
T Consensus       205 --~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  205 --SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             --CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence              45789999999999999999999999999887765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=5.8e-16  Score=116.86  Aligned_cols=237  Identities=13%  Similarity=0.109  Sum_probs=150.5

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEe--ccCC---EEEEEecCCCCCCeEE
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSML--FRSN---IICLVNSGPHQSNKVM   79 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~---~~~~~~~~~~~d~~i~   79 (359)
                      +...|+.+.--|++.+..-|.|..+.+|++..........+.   ...+....++  +.++   .++...+.. .| .+.
T Consensus        55 g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~---~nslgFCrfSl~~~~k~~eqll~yp~rg-sd-e~h  129 (323)
T KOG0322|consen   55 GRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIV---VNSLGFCRFSLVKKPKNSEQLLEYPSRG-SD-ETH  129 (323)
T ss_pred             ccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeee---ccccccccceeccCCCcchhheecCCcc-cc-hhh
Confidence            566788888888866666666999999999865444333332   2222222222  1111   112221110 11 122


Q ss_pred             EEECCCccEEeeec-----cCcceeEEEEec-ceeE-EE----ecCeEEEEEcccceee----------eeEeccCCCce
Q 018248           80 IWDDHENRYLGELS-----FRSEVKNVRLRR-DRIV-VV----LNQKVYVYNFTDLKLV----------DQIETVVNPTG  138 (359)
Q Consensus        80 iwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~-~~----~d~~i~i~d~~~~~~~----------~~~~~~~~~~~  138 (359)
                      +-|......++...     ..+.+.+..+.. ++.. ++    .+|.+.+||+.++..+          .....|..++.
T Consensus       130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl  209 (323)
T KOG0322|consen  130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL  209 (323)
T ss_pred             hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence            22222222222221     235566666432 2322 22    8999999999887333          33345667777


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCCe-----eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL  213 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~  213 (359)
                      .+.+.+.-+.  =++ |+.+..+..|..+-.     ......-....+..+.+-||++.+|+++.|+. |+||..++..+
T Consensus       210 sldyas~~~r--Gis-gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~p  285 (323)
T KOG0322|consen  210 SLDYASSCDR--GIS-GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNP  285 (323)
T ss_pred             eeeechhhcC--CcC-CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCc
Confidence            7777654433  222 445556666555432     12223334567899999999999999999999 99999999999


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      +..++.  |.+.|++++|+|+...+|+++.|++|-+|++
T Consensus       286 LAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 LAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999987  7799999999999999999999999999986

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=8.7e-15  Score=127.16  Aligned_cols=186  Identities=15%  Similarity=0.106  Sum_probs=121.3

Q ss_pred             CEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--e----cCeEEEEEcccceeeeeEeccCCC
Q 018248           63 NIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L----NQKVYVYNFTDLKLVDQIETVVNP  136 (359)
Q Consensus        63 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~  136 (359)
                      ..+++++... ....|.++|...........+...+.+.+|+|+|+.++  .    ...|++||+.+++... +......
T Consensus       164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~  241 (427)
T PRK02889        164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGS  241 (427)
T ss_pred             cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCC
Confidence            3455555322 24678888864433333334778899999999998776  2    2469999998876543 3333344


Q ss_pred             ceeeeeecCCCccEEEecCCCCeeEEEE--ecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CCCeEEEEEc--CCC
Q 018248          137 TGLCDVSQNAGPMVMACPGLLKGQVRVE--DYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KGTLIRVFNT--MDG  211 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~--~~~  211 (359)
                      ....+|+|+++.+++.  .+.++...+|  +..+...+.+..+........|+|||+.|+..+. ++. ..+|.+  .++
T Consensus       242 ~~~~~~SPDG~~la~~--~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g  318 (427)
T PRK02889        242 NSAPAWSPDGRTLAVA--LSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGG  318 (427)
T ss_pred             ccceEECCCCCEEEEE--EccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCC
Confidence            5678999999874443  3356665554  4455556666666666778899999998876654 455 666654  444


Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC---cEEEEEccCCC
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG---TVHVFGLKVDS  256 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~  256 (359)
                      +... +..  ........+|||||++|+..+.++   .|.+||+.+++
T Consensus       319 ~~~~-lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        319 AAQR-VTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             ceEE-Eec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            4322 221  122345678999999998776554   59999998765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=1.3e-15  Score=116.77  Aligned_cols=149  Identities=14%  Similarity=0.232  Sum_probs=111.4

Q ss_pred             eEEEEecceeEEE---e----------cCeEEEEEcc-cceeeeeEecc-CCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248           99 KNVRLRRDRIVVV---L----------NQKVYVYNFT-DLKLVDQIETV-VNPTGLCDVSQNAGPMVMACPGLLKGQVRV  163 (359)
Q Consensus        99 ~~~~~~~~~~~~~---~----------d~~i~i~d~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~  163 (359)
                      ..+.|+|+|.+++   .          -+...+|.++ .......+... .+++..++|+|+++.++++. |..++.+.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence            3567788877666   1          1234444442 23344455442 34689999999999866665 666789999


Q ss_pred             EecCCeeeEEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEE
Q 018248          164 EDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       164 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  240 (359)
                      |+.+.+.+..+.  ...++.+.|+|+|++|++++.   .|. |.+||.++.+.+..+.   | ..++.++|||||++|++
T Consensus        88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---H-SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---c-CcEEEEEEcCCCCEEEE
Confidence            999877777664  567789999999999999864   467 9999999988887776   3 35789999999999998


Q ss_pred             EcC------CCcEEEEEccCC
Q 018248          241 SSD------KGTVHVFGLKVD  255 (359)
Q Consensus       241 ~~~------dg~i~iw~~~~~  255 (359)
                      ++.      |+.++||++...
T Consensus       161 a~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEeccceeccccEEEEEecCe
Confidence            874      678999999643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2.3e-14  Score=125.09  Aligned_cols=218  Identities=10%  Similarity=0.026  Sum_probs=149.1

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR  107 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  107 (359)
                      .|.++|.+.....   .+. .|...+...+|+++++.+++++... .+..|.+||+.+++......+.+.+...+|+|+|
T Consensus       183 ~l~~~d~dg~~~~---~lt-~~~~~v~~p~wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        183 RLAIMDQDGANVR---YLT-DGSSLVLTPRFSPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEEECCCCCCcE---EEe-cCCCCeEeeEECCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            5777777643332   121 3577888999999999998887543 3579999999888765444466778889999999


Q ss_pred             eEEE----ec--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccc
Q 018248          108 IVVV----LN--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI  181 (359)
Q Consensus       108 ~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i  181 (359)
                      ..++    .+  ..|++||+.+++. ..+..+........|+|+++.+++++.......|++++..+...+.+..+...+
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            8665    23  4588889877654 344444444566899999987555442222346777777776666666556667


Q ss_pred             cEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC------CcEEEEEc
Q 018248          182 ASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK------GTVHVFGL  252 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~iw~~  252 (359)
                      ....|+|||+.|+..+.+   .. |.+||+.++. ...+..   ...+..+.|+|||+.|+..+.+      ..+.++++
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            788999999999877643   24 8888875554 334432   2246788999999988765543      24677777


Q ss_pred             cCCC
Q 018248          253 KVDS  256 (359)
Q Consensus       253 ~~~~  256 (359)
                      ..+.
T Consensus       412 ~g~~  415 (435)
T PRK05137        412 TGRN  415 (435)
T ss_pred             CCCc
Confidence            6544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=7.7e-15  Score=127.92  Aligned_cols=214  Identities=14%  Similarity=0.117  Sum_probs=142.1

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR  107 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  107 (359)
                      .|.+||.+......   +. .|...+....|+++++.+++++... .+..|.+||+.+++........+.....+|+|+|
T Consensus       185 ~l~i~D~~g~~~~~---lt-~~~~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        185 ALQVADSDGYNPQT---IL-RSAEPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEECCCCCCceE---ee-cCCCccccccCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            48888886443321   22 3456778889999999998887543 3467999999888765443355556688999999


Q ss_pred             eEEE----ec--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee--EEEEecCCeeeEEeecccc
Q 018248          108 IVVV----LN--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ--VRVEDYGTKKSKYITAHAS  179 (359)
Q Consensus       108 ~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~--v~~~~~~~~~~~~~~~~~~  179 (359)
                      ..++    .+  ..|++||+.+++. ..+..+.......+|+|+++.+++.+  ..+|.  +++++..+...+.+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence            8665    23  3699999987764 33443433445678999988744333  23444  5555555544554444444


Q ss_pred             cccEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC---CcEEEEEcc
Q 018248          180 RIASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK---GTVHVFGLK  253 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~  253 (359)
                      ....++|+|||++|+..+.++   . |.+||+.+++.. .+..   ........|+|||++|+..+.+   +.|.++++.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            556789999999998765433   5 899999887765 3432   1234567999999988776653   346777775


Q ss_pred             C
Q 018248          254 V  254 (359)
Q Consensus       254 ~  254 (359)
                      .
T Consensus       412 g  412 (433)
T PRK04922        412 G  412 (433)
T ss_pred             C
Confidence            4

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=2.2e-15  Score=116.81  Aligned_cols=211  Identities=16%  Similarity=0.118  Sum_probs=156.9

Q ss_pred             cCcceeEEEEecceeEEE---ecCeEEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-
Q 018248           94 FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-  166 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-  166 (359)
                      ...+|+|.+|++|+..++   ....|.||.....   +..++++.|...++.++|+|..+.  |++ ++.|..-++|.. 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr--Ivt-cs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR--IVT-CSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc--eeE-ccCCCCccccccC
Confidence            567899999999998888   6779999988543   577888899999999999999887  665 668999999887 


Q ss_pred             CC---eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE---EEeecCCCCcceEEEEecCCCCEEEE
Q 018248          167 GT---KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL---QEMRRGAERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       167 ~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~  240 (359)
                      .+   ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...--   +.++ ..+.+.|++++|+|++-+|++
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhC-CccccceeeeeccCCcceecc
Confidence            33   455566778899999999999999999999888 999877543311   1122 125678999999999999999


Q ss_pred             EcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccc----eeEEeecCCcEEEeeec
Q 018248          241 SSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWS----MAQFRLPENVQYLVGFG  316 (359)
Q Consensus       241 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s  316 (359)
                      |+.|+..+||..--.......     .+.                       -|...-+    +.++....+.+..+.|+
T Consensus       164 Gs~D~k~rVfSayIK~Vdekp-----ap~-----------------------pWgsk~PFG~lm~E~~~~ggwvh~v~fs  215 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKP-----APT-----------------------PWGSKMPFGQLMSEASSSGGWVHGVLFS  215 (361)
T ss_pred             cccCcceeEEEEeeeccccCC-----CCC-----------------------CCccCCcHHHHHHhhccCCCceeeeEeC
Confidence            999999999975332211000     000                       0000000    11122345789999999


Q ss_pred             ccCCEEEEEecCCeEEEEEeC
Q 018248          317 RQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       317 ~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      |+|..|+-.+.|+.+.+-+-.
T Consensus       216 ~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  216 PSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             CCCCEeeEecCCCceEEeecC
Confidence            999999999999999876543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=4e-15  Score=114.06  Aligned_cols=163  Identities=9%  Similarity=0.155  Sum_probs=109.4

Q ss_pred             eeeeecCCCccEEEecCC-------CCeeEEE--EecCCeeeEEeec-ccccccEEEEccCCcEEEEE--eCCCCeEEEE
Q 018248          139 LCDVSQNAGPMVMACPGL-------LKGQVRV--EDYGTKKSKYITA-HASRIASIAMTLDGRFVATA--SSKGTLIRVF  206 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~-------~d~~v~~--~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~--~~dg~~i~iw  206 (359)
                      .+.|++.|+.+++.+...       .-+...+  .+....+...+.- ..++|.+++|+|+|+.+|+.  ..+.. |.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEE
Confidence            356666666644443210       1122333  3233344444433 34579999999999987654  35677 9999


Q ss_pred             EcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC---CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeee
Q 018248          207 NTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD---KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSF  283 (359)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (359)
                      |++ ++.+..+.    ...++.+.|||+|++|++++.   .|.|.+||+++.+...                        
T Consensus        89 d~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~------------------------  139 (194)
T PF08662_consen   89 DVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS------------------------  139 (194)
T ss_pred             cCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee------------------------
Confidence            986 77777774    257789999999999999874   4679999999655210                        


Q ss_pred             eEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec------CCeEEEEEeCCCCCCceEEeeeccccC
Q 018248          284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL------DGSYYKCEFDPMKGGEMHQLEHYKFLK  354 (359)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~v~~~~~~~~~~~~~~~~~~~~~  354 (359)
                                          ......+..++|+|||++|++++.      |..++||++.   |..+......+|.+
T Consensus       140 --------------------~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~---G~~l~~~~~~~l~~  193 (194)
T PF08662_consen  140 --------------------TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ---GRLLYKKPFDELYQ  193 (194)
T ss_pred             --------------------ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec---CeEeEecchhhhhC
Confidence                                011224578999999999999885      7889999985   45555555555543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.3e-15  Score=119.05  Aligned_cols=186  Identities=15%  Similarity=0.215  Sum_probs=139.4

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeeccc-ccccEEEEc
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHA-SRIASIAMT  187 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~-~~i~~~~~s  187 (359)
                      .+|.|++||..+++.+..+++++..++.+.|..+...-.+.+ ++.||.|++|+.+..   .......+. .+..+++.+
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s-~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVIS-CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN  126 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEE-eccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence            899999999999999999999988888888876422222333 667999999998763   233344444 466777777


Q ss_pred             cCCcEEEEEeC----CCCeEEEEEcCCCcE-EEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCC
Q 018248          188 LDGRFVATASS----KGTLIRVFNTMDGSL-LQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGT  261 (359)
Q Consensus       188 ~~~~~l~~~~~----dg~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~  261 (359)
                      -.++.+++|..    +-. |.+||++..+. +..+. ..|...|+++.|+| +.++|++|+.||.|.|||++....... 
T Consensus       127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa-  203 (376)
T KOG1188|consen  127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA-  203 (376)
T ss_pred             CcCCeEEeccccccCceE-EEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh-
Confidence            67888888864    455 99999998876 65555 34778999999999 457999999999999999988643210 


Q ss_pred             CccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCCC
Q 018248          262 SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~  339 (359)
                                                  +...+.          +...|..+.|..++ +.|.+.+..+...+|++...
T Consensus       204 ----------------------------L~~viN----------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  204 ----------------------------LLHVIN----------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             ----------------------------HHHhhc----------ccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence                                        111111          12457889998876 56999999999999999763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=9.3e-15  Score=126.86  Aligned_cols=219  Identities=16%  Similarity=0.097  Sum_probs=147.9

Q ss_pred             CCCceEEEEEccCCCEEEEec----CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT----ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +...+.+.+|||||+.|+..+    +..+.+|++.+++......+    .+......|+|+++.++++.... .+..|.+
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~----~~~~~~~~~SPDG~~La~~~~~~-g~~~I~~  271 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF----PRHNGAPAFSPDGSKLAFALSKT-GSLNLYV  271 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC----CCCcCCeEECCCCCEEEEEEcCC-CCcEEEE
Confidence            345788999999999998754    34689999987654433333    23345678999999988875422 2346999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE--e--cC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L--NQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ||+.+++..+.......+....|+|+|+.++  .  ++  .|+++|+.+++. ..+...........|+|+++.++++..
T Consensus       272 ~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        272 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             EECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc
Confidence            9998887665544556778899999998776  2  33  556667665543 333333334456889999987544432


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCC--eEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGT--LIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                      ......+.+++..+...+.+... .......|+|||+.|+.++.++.  .+.++++ +|.....+..  +.+.+...+|+
T Consensus       351 ~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~--~~~~~~~p~Ws  426 (429)
T PRK03629        351 NGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA--TDGQVKFPAWS  426 (429)
T ss_pred             cCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc--CCCCcCCcccC
Confidence            12234566677766555555532 23457889999999999887764  1566666 5666666765  56778889998


Q ss_pred             C
Q 018248          233 S  233 (359)
Q Consensus       233 ~  233 (359)
                      |
T Consensus       427 p  427 (429)
T PRK03629        427 P  427 (429)
T ss_pred             C
Confidence            7

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=8e-17  Score=130.62  Aligned_cols=192  Identities=13%  Similarity=0.156  Sum_probs=161.6

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI  130 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~  130 (359)
                      ...+..+-++..+++.+    ..|.|..+|..++++..++.....|.++.|..+.++++  ....++|||- .|..++.+
T Consensus       132 PY~~~ytrnGrhlllgG----rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGG----RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             CeeeeecCCccEEEecC----CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeeh
Confidence            34455666667776665    67999999999999999999889999999998888887  8899999995 67778888


Q ss_pred             eccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248          131 ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~  209 (359)
                      +.+. .+.-+.|-|..  ++|++ ++..|.++. +...++.+..+....+.+..++-+|-...+-+|...|+ |.+|...
T Consensus       207 k~~~-~v~rLeFLPyH--fLL~~-~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~  281 (545)
T KOG1272|consen  207 KRHI-RVARLEFLPYH--FLLVA-ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPN  281 (545)
T ss_pred             hhcC-chhhhcccchh--heeee-cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCC
Confidence            7654 45667777654  45665 667888887 66677888888888889999999999999999999999 9999998


Q ss_pred             CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..+++..+..  |.++|.++++.++|+|++|++.|..++|||++.-.
T Consensus       282 skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  282 SKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             CcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            8888877776  88999999999999999999999999999999865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4.1e-14  Score=122.96  Aligned_cols=205  Identities=12%  Similarity=0.086  Sum_probs=131.9

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR  107 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  107 (359)
                      .|.++|.+.....  ...  .+...+...+|+|+++.+++++... ....|.+||+.+++........+.+....|+|||
T Consensus       177 ~L~~~D~dG~~~~--~l~--~~~~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        177 QLQISDADGQNAQ--SAL--SSPEPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             EEEEECCCCCCce--Eec--cCCCCcccceEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            4666666432222  111  3567788889999999998887433 3467999999988765443355667789999999


Q ss_pred             eEEE----ecCeEEE--EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEe--cCCeeeEEeecccc
Q 018248          108 IVVV----LNQKVYV--YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED--YGTKKSKYITAHAS  179 (359)
Q Consensus       108 ~~~~----~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~--~~~~~~~~~~~~~~  179 (359)
                      ..++    .++...+  +|+..+. ...+..+........|+|+++.+++.+  ..++...+|.  ..+...+.+.....
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~  328 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGS  328 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCC
Confidence            7665    4555444  4554443 344443444445678999998754433  2344555543  33333443333334


Q ss_pred             cccEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC
Q 018248          180 RIASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG  245 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  245 (359)
                      .....+|+|||++|+..+.++   . |.+||+.+++... +...   .......|+|||+.|+.++.++
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~-I~v~d~~~g~~~~-lt~~---~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFK-LYVQDLATGQVTA-LTDT---TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEE-EEEEECCCCCeEE-ccCC---CCccCceECCCCCEEEEEEecC
Confidence            455789999999998776553   5 8999998887543 3321   2346789999999988777544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1.5e-14  Score=112.86  Aligned_cols=191  Identities=15%  Similarity=0.173  Sum_probs=147.5

Q ss_pred             EEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeE
Q 018248           55 LVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQI  130 (359)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~  130 (359)
                      ..+++|++++++..+     +..+.|-|..+-+..+.+..-+.|.-+.|..+..++.    .++.|.+|++...+--..+
T Consensus        13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence            567899999998876     4688888888877777666667788899998887665    8899999999888877888


Q ss_pred             eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC------------
Q 018248          131 ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS------------  198 (359)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------------  198 (359)
                      .....+....+|+|+++.+++.  ..-+-.|.+|....+....++-.+..+..++|+|||++.+.++.            
T Consensus        88 deg~agls~~~WSPdgrhiL~t--seF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLT--SEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             ccCCCcceeeeECCCcceEeee--ecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            8778888899999999874443  44677888899998887777766777899999999998886654            


Q ss_pred             -----------------------CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          199 -----------------------KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       199 -----------------------dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                                             ||.-+.+||.--.-.+..++.   .-.+..++|+|.+++|+.|+.|+.+||.+--+-
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee---ccceeEEEeccccceEEeeccchhhhhhceeee
Confidence                                   232256666433333334432   247889999999999999999999998665443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.3e-15  Score=120.90  Aligned_cols=189  Identities=16%  Similarity=0.210  Sum_probs=140.4

Q ss_pred             EEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248           10 HHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      .+++|+++|..|++|+ ||.+|||+...........   .|...|..+.|++++..++.++    .| ..+||+..++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~---~~~~eV~DL~FS~dgk~lasig----~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI---AHHAEVKDLDFSPDGKFLASIG----AD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH---hhcCccccceeCCCCcEEEEec----CC-ceEEEEeccCch
Confidence            6899999999999999 9999999977554442222   6889999999999999999988    56 999999999977


Q ss_pred             Eeeec---cCcceeEEEEecce-----eEEE---ecCeEEEEEccccee-----eeeEeccCCCceeeeeecCCCccEEE
Q 018248           89 LGELS---FRSEVKNVRLRRDR-----IVVV---LNQKVYVYNFTDLKL-----VDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        89 ~~~~~---~~~~v~~~~~~~~~-----~~~~---~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      +....   .+.....+.|+.++     .+.+   ..+.|..|++.....     ..+.......+.+++++.+++.  +|
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~A  297 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--LA  297 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--EE
Confidence            77665   33456677887766     2222   556677777632211     1111112346788999998875  55


Q ss_pred             ecCCCCeeEEEEec-CCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248          153 CPGLLKGQVRVEDY-GTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       153 ~~g~~d~~v~~~~~-~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~  210 (359)
                      . |+.||.|.|++. +.+.++.. +.|..-|+.+.|+||.+++++.+.+.. +.+..+.-
T Consensus       298 l-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v  355 (398)
T KOG0771|consen  298 L-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV  355 (398)
T ss_pred             E-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence            5 668999999554 44554444 579999999999999999999998888 88877643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=6.5e-15  Score=124.36  Aligned_cols=178  Identities=15%  Similarity=0.169  Sum_probs=132.9

Q ss_pred             CCeEEEEECCCc-c----EEeeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccc-------eeeeeEeccCCCce
Q 018248           75 SNKVMIWDDHEN-R----YLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDL-------KLVDQIETVVNPTG  138 (359)
Q Consensus        75 d~~i~iwd~~~~-~----~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~-------~~~~~~~~~~~~~~  138 (359)
                      -|.|-||++... +    .+-.+.....|+++.|.| |...++   .||.|++|.+..+       .+...+..|...+.
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            499999998753 2    233334567899999998 333333   9999999998543       34566778888899


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE-EEE
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL-LQE  216 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~-~~~  216 (359)
                      .+.|+|-...+ |++ .+.|-+|++|+... .....+.+|.+.|..++|||+|+.+|+.+.||+ |++|+.++++. +++
T Consensus       682 slRfHPLAadv-La~-asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~E  758 (1012)
T KOG1445|consen  682 SLRFHPLAADV-LAV-ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYE  758 (1012)
T ss_pred             EEEecchhhhH-hhh-hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCcccc
Confidence            99999976653 343 66899999998876 455678999999999999999999999999999 99999887653 333


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEcCCC----cEEEEEccCCC
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASSDKG----TVHVFGLKVDS  256 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~  256 (359)
                      =++. -...--.+.|.-||+++++.+.|.    .|.+||.++-.
T Consensus       759 g~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  759 GKGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             CCCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            3221 123345678888999998887664    57788776643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=9.3e-14  Score=125.63  Aligned_cols=246  Identities=9%  Similarity=0.061  Sum_probs=161.1

Q ss_pred             CCCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcc-----eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            3 QPDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKP-----IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      ++|...|..++.++.. .+|++|+ ||+|++|++.....     ....++. -....+..+.+.+.++.+++++    .|
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t----~D 1119 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVST----KD 1119 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEc----CC
Confidence            4678888889888765 9999999 99999999863211     1112221 1256788888888999999886    79


Q ss_pred             CeEEEEECCCc-------cEEeeec--cCcceeEE-EEecc-ee-EEE---ecCeEEEEEcccceeeeeEec--cCCCce
Q 018248           76 NKVMIWDDHEN-------RYLGELS--FRSEVKNV-RLRRD-RI-VVV---LNQKVYVYNFTDLKLVDQIET--VVNPTG  138 (359)
Q Consensus        76 ~~i~iwd~~~~-------~~~~~~~--~~~~v~~~-~~~~~-~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~  138 (359)
                      |.|.+.++...       ...+...  ..+.+.++ ++... +. .++   ..+.|..||++....+..++.  ..+.++
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            99999998752       1122222  23444443 33322 12 222   788999999977666555543  345677


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCCeee-EEe-ecccccccEEEEccCC---cEEEEEe--CCCCeEEEEEcCCC
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYI-TAHASRIASIAMTLDG---RFVATAS--SKGTLIRVFNTMDG  211 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~-~~~-~~~~~~i~~~~~s~~~---~~l~~~~--~dg~~i~iwd~~~~  211 (359)
                      .++++|.+.  +++. |...|.+.+|+.+-+.. ... ..+..+++.+..+|-.   ...++++  ..+. |.+|++.+|
T Consensus      1200 Si~idp~~~--Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~~~g 1275 (1431)
T KOG1240|consen 1200 SIVIDPWCN--WLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNMETG 1275 (1431)
T ss_pred             EEEecCCce--EEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeecccC
Confidence            888888776  4555 77899999999986543 222 3445788888877643   3444444  4666 999999998


Q ss_pred             cEEEEeecCC-----------------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          212 SLLQEMRRGA-----------------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       212 ~~~~~~~~~~-----------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      .....+....                 +.-......+..-+..+.+|+.|..|+.||......
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            7766655420                 000111222223345888999999999999988764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.66  E-value=1.4e-13  Score=120.30  Aligned_cols=177  Identities=14%  Similarity=0.130  Sum_probs=122.6

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
                      ...|.++|...........+...+....|+|+++.++      ....|++||+.+++... +..........+|+|+++.
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            4578888876544444444666788999999999887      12589999998775433 2333444556889999887


Q ss_pred             cEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          149 MVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                      +++......+..|++++..+.....+..+........|+|||+.|+..+..+   . |+++|+.+++... +..  +...
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~~-l~~--~~~~  323 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVRR-LTF--RGGY  323 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEEE-eec--CCCC
Confidence            5544322223457778877766666666666666789999999887765432   4 7788887766443 332  2346


Q ss_pred             eEEEEecCCCCEEEEEcCCC---cEEEEEccCCC
Q 018248          226 IYSLAFSSNAQWLAASSDKG---TVHVFGLKVDS  256 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~  256 (359)
                      +..+.|+|+|++|+.++.++   .|.+||+.++.
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            67889999999998887765   68888887643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=1.3e-12  Score=110.33  Aligned_cols=188  Identities=16%  Similarity=0.124  Sum_probs=118.7

Q ss_pred             CEEE-Eec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248           19 GCFA-TGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS   96 (359)
Q Consensus        19 ~~l~-~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~   96 (359)
                      ++++ +-. ++.|.+.|.++.+.......  + ...-..+.++++++++.+++    .|+.|.++|+.+++.+.+++...
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~-~~~h~~~~~s~Dgr~~yv~~----rdg~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPT--G-GAPHAGLKFSPDGRYLYVAN----RDGTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE---S-TTEEEEEE-TT-SSEEEEEE----TTSEEEEEETTSSSEEEEEE-SS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcC--C-CCceeEEEecCCCCEEEEEc----CCCeEEEEECCcccEEEEEecCC
Confidence            3443 344 89999999998666543332  1 22233456788888888776    68999999999999999999777


Q ss_pred             ceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCC-------CceeeeeecCCCccEEEecCCCCeeEEEEe
Q 018248           97 EVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVN-------PTGLCDVSQNAGPMVMACPGLLKGQVRVED  165 (359)
Q Consensus        97 ~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~  165 (359)
                      ...++++++||++++    ..+.+.++|.++.+.++.+.....       .+..+..++..... ++. -.+.+.|.+-+
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f-Vv~-lkd~~~I~vVd  156 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF-VVN-LKDTGEIWVVD  156 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE-EEE-ETTTTEEEEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE-EEE-EccCCeEEEEE
Confidence            889999999999887    789999999999999988865322       23334445555543 333 23446676644


Q ss_pred             cC-CeeeE-EeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEE
Q 018248          166 YG-TKKSK-YITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       166 ~~-~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~  216 (359)
                      .. ...+. .............|+|++++++++. .... |-++|.++++.+..
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~  209 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVAL  209 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEE
T ss_pred             eccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEE
Confidence            32 22222 2222344567889999999877654 4445 88888877765544

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=6.7e-13  Score=103.18  Aligned_cols=234  Identities=12%  Similarity=0.193  Sum_probs=149.9

Q ss_pred             EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCc--ceeEEEEecceeEEE--------ecCeEEEEEcccc
Q 018248           56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRS--EVKNVRLRRDRIVVV--------LNQKVYVYNFTDL  124 (359)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~--~v~~~~~~~~~~~~~--------~d~~i~i~d~~~~  124 (359)
                      ++|..+....+++.     |.-.+||+.+.-+.....+ +.+  .+..+-|-.+-..++        .-+.+.|||-...
T Consensus        11 vs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen   11 VSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             EEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            56655555555544     6778999876533322222 111  122222222222222        3457999996666


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc--CCcEEEEEe-CC
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL--DGRFVATAS-SK  199 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~-~d  199 (359)
                      +++.++.- ..++..+.+.++  .++++    ..+.|+||....  +.++.+.....+---++..|  +..+||.-+ .-
T Consensus        86 ~~i~el~f-~~~I~~V~l~r~--riVvv----l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   86 RCIIELSF-NSEIKAVKLRRD--RIVVV----LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             cEEEEEEe-ccceeeEEEcCC--eEEEE----ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            66666653 456777777654  33333    377899987763  44555543332222334444  344565544 45


Q ss_pred             CCeEEEEEcCCCcE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCCc-EEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248          200 GTLIRVFNTMDGSL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGT-VHVFGLKVDSGSPGTSKLHSASEPNLSSKN  276 (359)
Q Consensus       200 g~~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
                      |. |.|-|+...+.  ...+..  |.+.|.+++++.+|..+||++..|+ |||||..+++...                 
T Consensus       159 Gq-vQi~dL~~~~~~~p~~I~A--H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~-----------------  218 (346)
T KOG2111|consen  159 GQ-VQIVDLASTKPNAPSIINA--HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ-----------------  218 (346)
T ss_pred             ce-EEEEEhhhcCcCCceEEEc--ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee-----------------
Confidence            77 99999876655  345555  8899999999999999999999998 8999999988431                 


Q ss_pred             CCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCce
Q 018248          277 SSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEM  344 (359)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~  344 (359)
                             .+-++                .....+.+++|||+..+|+++++-|+++||.+.....++.
T Consensus       219 -------E~RRG----------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~  263 (346)
T KOG2111|consen  219 -------ELRRG----------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED  263 (346)
T ss_pred             -------eeecC----------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence                   00000                1124689999999999999999999999999987544433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.63  E-value=1.3e-11  Score=104.36  Aligned_cols=278  Identities=16%  Similarity=0.211  Sum_probs=171.0

Q ss_pred             CceEEEEcC--CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc--c--EEeeec-cCccee
Q 018248           27 TGFRVYLSD--PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN--R--YLGELS-FRSEVK   99 (359)
Q Consensus        27 ~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~--~--~~~~~~-~~~~v~   99 (359)
                      +.|.+|+++  +++......+  .-......++++++++.+..+......++.|..|.+...  +  .+.... ......
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~--~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTV--AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEE--EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CcEEEEEEcCCCCCceEeeee--cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            679999884  4433333322  124556778888888888877653102589999987664  2  333333 455667


Q ss_pred             EEEEecceeEEE----ecCeEEEEEccc-ceeeee---Ee--c--------cCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248          100 NVRLRRDRIVVV----LNQKVYVYNFTD-LKLVDQ---IE--T--------VVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus       100 ~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~---~~--~--------~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      .++++|++.+++    .+|.|.++++.. +.....   +.  +        .......+.++|+++.++++--|  ...|
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v  168 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRV  168 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEE
Confidence            899999998777    689999999965 443322   11  0        11223568889998876655433  3367


Q ss_pred             EEEecCCee--e---EEee-cccccccEEEEccCCcEEEEEeCCCCeEEEEEcC--CCcE--EEEeec---CC-CCcceE
Q 018248          162 RVEDYGTKK--S---KYIT-AHASRIASIAMTLDGRFVATASSKGTLIRVFNTM--DGSL--LQEMRR---GA-ERAEIY  227 (359)
Q Consensus       162 ~~~~~~~~~--~---~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~--~~~~--~~~~~~---~~-~~~~i~  227 (359)
                      .++..+...  +   ..+. ......+.++|+|+++++++..+....|.++++.  ++..  +..+..   .. ......
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            775544322  2   2222 2345678999999999887776544339999987  4432  222221   11 112678


Q ss_pred             EEEecCCCCEEEEEc-CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248          228 SLAFSSNAQWLAASS-DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP  306 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (359)
                      .++++|||++|.++. ..+.|.+|+++.....                        +..+..              +...
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~------------------------l~~~~~--------------~~~~  290 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGT------------------------LTLVQT--------------VPTG  290 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTT------------------------EEEEEE--------------EEES
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCc------------------------eEEEEE--------------EeCC
Confidence            999999999987765 5568999999543211                        111110              1112


Q ss_pred             CCcEEEeeecccCCEEEEEec-CCeEEEEEeCCCCCCceEEe
Q 018248          307 ENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDPMKGGEMHQL  347 (359)
Q Consensus       307 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~  347 (359)
                      ....+.++|+|+|++|+++.. ++.|.+|+++.++ |.+...
T Consensus       291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t-G~l~~~  331 (345)
T PF10282_consen  291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT-GKLTPV  331 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC-CcEEEe
Confidence            234678999999999999886 7799999998765 445443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.62  E-value=4.2e-13  Score=105.44  Aligned_cols=244  Identities=13%  Similarity=0.217  Sum_probs=160.3

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCc---ceeeeecccCC------------CCceeEEEEeccCCE--EEE
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK---PIMRRDFDRNP------------RGGTQLVSMLFRSNI--ICL   67 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~---~~~~~~~~~~h------------~~~v~~~~~~~~~~~--~~~   67 (359)
                      .+-|.++.|...|.+||+|. +|.|.+|.-+...   ..+...++ .|            ...+..+.|...++.  .++
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            45689999999999999999 8999999765322   12222222 23            244667777766654  333


Q ss_pred             EecCCCCCCeEEEEECCCcc-----------------------------------EEeeec--cCcceeEEEEecceeEE
Q 018248           68 VNSGPHQSNKVMIWDDHENR-----------------------------------YLGELS--FRSEVKNVRLRRDRIVV  110 (359)
Q Consensus        68 ~~~~~~~d~~i~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~~~~~~~~  110 (359)
                      ++    .|.+|++|.+....                                   +.+.+.  |...|.++.++.|...+
T Consensus       104 st----NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~  179 (433)
T KOG1354|consen  104 ST----NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF  179 (433)
T ss_pred             ec----CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence            34    68999999864321                                   112222  56678999999998777


Q ss_pred             E--ecCeEEEEEcccce-ee--eeEecc-----CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-----eEEe-
Q 018248          111 V--LNQKVYVYNFTDLK-LV--DQIETV-----VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-----SKYI-  174 (359)
Q Consensus       111 ~--~d~~i~i~d~~~~~-~~--~~~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-----~~~~-  174 (359)
                      .  .|=.|.+|+++-.. ..  ..++++     ..-++...|+|..-..+ ++ .+..|+|++-+++...     .+.+ 
T Consensus       180 lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f-~Y-SSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  180 LSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF-VY-SSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             eeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE-EE-ecCCCcEEEeechhhhhhcchhhhhc
Confidence            7  77899999984322 11  112221     22356678888876644 44 3468999996555211     1111 


Q ss_pred             -----------ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCC----------Ccc---eEEE
Q 018248          175 -----------TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAE----------RAE---IYSL  229 (359)
Q Consensus       175 -----------~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~----------~~~---i~~~  229 (359)
                                 ..--..|..+.|+++|+|+++-..- + |++||+. ..+++.++..+..          ...   -..+
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence                       1223468899999999999886544 4 9999994 4556666554211          112   2457


Q ss_pred             EecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          230 AFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      +|+.++.+++||+.....+++++..+...
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCCCcce
Confidence            89999999999999999999997766543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=2.3e-13  Score=108.49  Aligned_cols=244  Identities=16%  Similarity=0.175  Sum_probs=165.1

Q ss_pred             CCceEEEEEccCCC--EEEEec-CCceEEEEcCCCcceeee-ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            6 PITIHHLALNQDHG--CFATGT-ETGFRVYLSDPYKPIMRR-DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         6 ~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ...|..++|.-|++  .+...+ +..+..+..+........ .+..-|-+.-.+..+......++++.    .+|.+.+|
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~----~sG~l~~~  130 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCV----SSGNLQVR  130 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEe----cCCcEEEE
Confidence            45677888876654  444443 666666666543322111 00001112222223333345555555    57999999


Q ss_pred             ECCCc----cEEeeeccCcceeEEEEecceeEEE----ec--CeEEEEEcccceeeeeEeccCC-------Cce--eeee
Q 018248           82 DDHEN----RYLGELSFRSEVKNVRLRRDRIVVV----LN--QKVYVYNFTDLKLVDQIETVVN-------PTG--LCDV  142 (359)
Q Consensus        82 d~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~-------~~~--~~~~  142 (359)
                      ..+.+    ..+..+.....+..+.-++....++    ..  ..+.+||++..+.+..-+..++       +++  .+.|
T Consensus       131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            98744    3344445456677777777665555    33  6799999987766555433221       222  3444


Q ss_pred             ecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE-eec
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE-MRR  219 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~-~~~  219 (359)
                      -+......+|+ +..-+.+++|+...  +++..+.-...+++++...|.++++++|...+. +..||++.++.+.. +.+
T Consensus       211 l~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~~~kg  288 (412)
T KOG3881|consen  211 LEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGCGLKG  288 (412)
T ss_pred             cCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeeccccCC
Confidence            44422334554 55788999988764  677778878899999999999999999999999 99999999998887 544


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                        -.+.|.++..+|.+++|++++-|..|||+|+++.+.
T Consensus       289 --~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  289 --ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             --ccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence              568999999999999999999999999999999653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.5e-13  Score=122.65  Aligned_cols=244  Identities=17%  Similarity=0.254  Sum_probs=163.3

Q ss_pred             CCCCceEEEEEcc--CCCEEEEec-CCceEEEEcCCC---cceeeeecc------cCCCCceeEEEEeccCCEEEEEecC
Q 018248            4 PDPITIHHLALNQ--DHGCFATGT-ETGFRVYLSDPY---KPIMRRDFD------RNPRGGTQLVSMLFRSNIICLVNSG   71 (359)
Q Consensus         4 ~h~~~v~~~~~s~--~g~~l~~~~-d~~i~iw~~~~~---~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~   71 (359)
                      .....|+.+.+-.  |..++++|+ ||.|+||+--..   +..+...+.      .+-.+.-..++|......+++.+  
T Consensus      1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-- 1184 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-- 1184 (1387)
T ss_pred             CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC--
Confidence            3456788888864  556788888 999999974321   112111111      01112123445554445555444  


Q ss_pred             CCCCCeEEEEECCCccEEeeec--cCcceeEEEEec-ceeEEE---ecCeEEEEEcccce---eeeeEeccCCC--ceee
Q 018248           72 PHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLK---LVDQIETVVNP--TGLC  140 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~---~~~~~~~~~~~--~~~~  140 (359)
                        .-..|+|||....+.+..+.  ....|+++.-+. .|..++   .||.|++||.+...   .+...+.|...  +.-+
T Consensus      1185 --d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1185 --DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred             --CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence              34899999999988888887  334566665433 345555   99999999986432   34555666655  5556


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecCCeeeE---Eeeccc--c-cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK---YITAHA--S-RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~~~~--~-~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      .+.+.|-. -+++ |+.+|.|++|+.+.....   .+..|.  + ..+++..+++...+|+|+. +. |+||++ .|+.+
T Consensus      1263 slq~~G~~-elvS-gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~l 1337 (1387)
T KOG1517|consen 1263 SLQRQGLG-ELVS-GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQL 1337 (1387)
T ss_pred             EeecCCCc-ceee-eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhhh
Confidence            66665554 2444 789999999998874222   223332  3 4999999999999999998 77 999997 45544


Q ss_pred             EEeecC-----CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          215 QEMRRG-----AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       215 ~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..++..     ...+.+.+++|+|-.-+||+|+.|.+|.||....+.
T Consensus      1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            444321     123578999999999999999999999999887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.59  E-value=1.4e-12  Score=114.10  Aligned_cols=214  Identities=14%  Similarity=0.092  Sum_probs=140.9

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR  107 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  107 (359)
                      .|.++|.+......  .+  .+...+....|+++++.++++.... ....|++||+.+++......+...+.+++|+|++
T Consensus       171 ~l~~~d~~g~~~~~--l~--~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       171 ELQVADYDGANPQT--IT--RSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             eEEEEcCCCCCCEE--ee--cCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            47777776433322  12  2355677788999999998877433 2468999999988765544466667789999999


Q ss_pred             eEEE----e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccc
Q 018248          108 IVVV----L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI  181 (359)
Q Consensus       108 ~~~~----~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i  181 (359)
                      +.++    .  +..|++||+.+++.. .+..+........|+|+++.+++.+.-.....|++++..+.....+..+....
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~  324 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN  324 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            7665    2  346999998766543 33333333445688898876444431111235666666665556666566677


Q ss_pred             cEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC---cEEEEEc
Q 018248          182 ASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG---TVHVFGL  252 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iw~~  252 (359)
                      ..+.|+|+|++|+.++.++   . |.+||+.++... .+...   .......|+|||++|+..+.++   .+.+.+.
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            8899999999998888765   6 889998876543 33321   2334568999999888777654   3444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=1.1e-12  Score=109.55  Aligned_cols=234  Identities=11%  Similarity=0.173  Sum_probs=168.3

Q ss_pred             EEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC--CEEEEEecC-CCCCCeEEEEECCCc
Q 018248           10 HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS--NIICLVNSG-PHQSNKVMIWDDHEN   86 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~-~~~d~~i~iwd~~~~   86 (359)
                      ++..|++|..+.|--..+.+.+|+....+... ..+   |...+....+++.+  ..+++..-+ ......|+||.....
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl---~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKL---SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCcccee-eee---eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            58889988876655558899999998754443 333   57888888888874  334432211 114688999986632


Q ss_pred             cEEeee---c-cCcceeEEEEecceeEEE---------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248           87 RYLGEL---S-FRSEVKNVRLRRDRIVVV---------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        87 ~~~~~~---~-~~~~v~~~~~~~~~~~~~---------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      ..-..+   . +...=..+.|++-|.-++               .+.++++++++.......+ ...++|..+.|++++.
T Consensus       205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGR  283 (566)
T ss_pred             cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCC
Confidence            221111   1 333344577877654332               3457889988743433333 3478999999999999


Q ss_pred             ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          148 PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      .+.+++ |..-..+.+++.++.++..+.  .++-+++-|+|.|++|+.++-   .|. |.+||..+.+++..+..    .
T Consensus       284 EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a----~  355 (566)
T KOG2315|consen  284 EFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKA----A  355 (566)
T ss_pred             EEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhcccccc----C
Confidence            877777 888889999999998887764  567789999999999988775   477 99999999888888875    3


Q ss_pred             ceEEEEecCCCCEEEEEcC------CCcEEEEEccCCC
Q 018248          225 EIYSLAFSSNAQWLAASSD------KGTVHVFGLKVDS  256 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~  256 (359)
                      .-+-+.|+|||++++|++.      |+.++||+.....
T Consensus       356 ~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  356 NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            4567899999999998874      5779999997643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.5e-12  Score=112.21  Aligned_cols=216  Identities=13%  Similarity=0.065  Sum_probs=132.1

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR  107 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  107 (359)
                      .+.++|.+........    .+...+....|+|+++.+++++... ....|.+||+.+++...............|+|+|
T Consensus       199 ~l~i~d~dG~~~~~l~----~~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYNEQMLL----RSPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCCceEee----cCCCcccCceECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence            4566676654333211    2356677889999999998876432 2357999999888754333334445578999999


Q ss_pred             eEEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccc
Q 018248          108 IVVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI  181 (359)
Q Consensus       108 ~~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i  181 (359)
                      +.++    .++  .|+++|+.+++. ..+..+.......+|+|+++.+++.+.......|++++..+.....+.......
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~  352 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN  352 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence            8776    344  588889877654 333333444556789999887544432111234555555544444443333334


Q ss_pred             cEEEEccCCcEEEEEeCC-CC-eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-Cc--EEEEEcc
Q 018248          182 ASIAMTLDGRFVATASSK-GT-LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-GT--VHVFGLK  253 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~iw~~~  253 (359)
                      ...+|+|||++|+..+.+ +. .|.++|+.+++.. .+...   .......|+|||+.|+..+.+ +.  +++++.+
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            567999999988776553 32 1566788777653 33321   122345799999988765543 33  5666654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=6.6e-13  Score=114.06  Aligned_cols=289  Identities=13%  Similarity=0.159  Sum_probs=195.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-------------ceeeeecccCCCCceeEEEEeccCCEEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-------------PIMRRDFDRNPRGGTQLVSMLFRSNIICLV   68 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~   68 (359)
                      -|......|++|+....++|+|+ ||.+++..+.+..             ....+++. ||.+.|..+.|......+...
T Consensus        11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEecccccccccc
Confidence            46677899999999999999999 9999999886422             12234455 999999998886554444433


Q ss_pred             ecCCCCCCeEEEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248           69 NSGPHQSNKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV  142 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (359)
                      .    .+|.|.+|-+-.|....++.   ..+-|.+++|+.+|..++   .||.|.+=.+. |..+.--+........+.|
T Consensus        90 D----t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~w  164 (1189)
T KOG2041|consen   90 D----TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLW  164 (1189)
T ss_pred             C----CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceee
Confidence            3    57999999998887666553   557789999999998777   89998887763 3333222222222345788


Q ss_pred             ecCCCccEEEecCCCCeeEEEEecCCeeeEE------------eecccccccEEEEc--------cCCcEEEEEeCCCCe
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDYGTKKSKY------------ITAHASRIASIAMT--------LDGRFVATASSKGTL  202 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~------------~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~~  202 (359)
                      ++|.+..++   +..+|.+.+++..+.....            +......|..+.|.        ||...|+++...|. 
T Consensus       165 s~D~~~~Lf---~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr-  240 (1189)
T KOG2041|consen  165 SEDLEQALF---KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR-  240 (1189)
T ss_pred             cccHHHHHh---hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-
Confidence            888775333   4468899998877632111            11112235555553        57889999999998 


Q ss_pred             EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                      +.|-.-.+......+..   .-.+....|+++|..|+.++.+..-     ...+                      ....
T Consensus       241 ~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da-----~~~~----------------------d~n~  290 (1189)
T KOG2041|consen  241 MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDA-----DEPT----------------------DSNK  290 (1189)
T ss_pred             ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccc-----cCcc----------------------ccce
Confidence            88876555544444443   2478999999999999999876421     1111                      0011


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      +.|...       -...+.+++.|...|++++|...|-.++. ..|+.|++-++.|+
T Consensus       291 v~Fysp-------~G~i~gtlkvpg~~It~lsWEg~gLriA~-AvdsfiyfanIRP~  339 (1189)
T KOG2041|consen  291 VHFYSP-------YGHIVGTLKVPGSCITGLSWEGTGLRIAI-AVDSFIYFANIRPE  339 (1189)
T ss_pred             EEEecc-------chhheEEEecCCceeeeeEEcCCceEEEE-EecceEEEEeeccc
Confidence            111111       12334568888899999999888777664 46888998888886

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.7e-12  Score=112.37  Aligned_cols=215  Identities=11%  Similarity=0.067  Sum_probs=136.2

Q ss_pred             eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEeccee
Q 018248           29 FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRI  108 (359)
Q Consensus        29 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  108 (359)
                      |.++|.+......  ..  .+...+....|+++++.+++++... ....|.+||+.+++........+.+....|+|+|+
T Consensus       181 l~~~d~~g~~~~~--l~--~~~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        181 LQRSDYDGARAVT--LL--QSREPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEECCCCCCceE--Ee--cCCCceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC
Confidence            6666766443321  12  2456778889999999998877432 23579999998887654444455566789999998


Q ss_pred             EEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccccccc
Q 018248          109 VVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA  182 (359)
Q Consensus       109 ~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~  182 (359)
                      .++    .++  .|++||+.+++.. .+..+........|+|+++.+++.+.......|++++..+.....+........
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~  334 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA  334 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence            766    233  7899999776543 343344444567899998875444321112356666655544444433233345


Q ss_pred             EEEEccCCcEEEEEeCC-C--CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-C--cEEEEEccC
Q 018248          183 SIAMTLDGRFVATASSK-G--TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-G--TVHVFGLKV  254 (359)
Q Consensus       183 ~~~~s~~~~~l~~~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~  254 (359)
                      ...|+|||++|+..+.+ +  . |.++|+.+++.. .+...   .......|+|||+.|+..+.+ +  .|.++++..
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            67899999998877643 2  4 788998887653 33321   122356899999998776643 3  355666643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.7e-12  Score=113.23  Aligned_cols=216  Identities=14%  Similarity=0.104  Sum_probs=136.0

Q ss_pred             CCceEEEEEccCCCEEEEec--CC--ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT--ET--GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ...+.+..|||||+.|+..+  ++  .|.+||+.+++......+    .+......|+++++.++++.... ....|.++
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~----~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~  291 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF----PGINGAPRFSPDGKKLALVLSKD-GQPEIYVV  291 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC----CCCcCCeeECCCCCEEEEEEeCC-CCeEEEEE
Confidence            45677899999999998775  33  488888887655433333    23334578999999888765422 22458888


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE----ec--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV----LN--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      |+.+++......+........|+|+++.++    .+  ..|+++|+.+++... +..........+|+|+++.+++..  
T Consensus       292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~--  368 (448)
T PRK04792        292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVN--  368 (448)
T ss_pred             ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEE--
Confidence            988876554433555667889999998776    22  367777887665433 221222223468999998754443  


Q ss_pred             CCCee--EEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC-C-eEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          156 LLKGQ--VRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG-T-LIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       156 ~~d~~--v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      ..++.  |.+.+..+.....+... .......|+|||+.|+..+.++ . .+++++. +|.....+..  +.+.+...+|
T Consensus       369 ~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~--~~g~~~~p~W  444 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA--GQGEVKSPAW  444 (448)
T ss_pred             ecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC--CCCCcCCCcc
Confidence            23443  44455555544444432 2234568999999887765443 2 1666675 5666666654  3456777888


Q ss_pred             cC
Q 018248          232 SS  233 (359)
Q Consensus       232 s~  233 (359)
                      +|
T Consensus       445 sp  446 (448)
T PRK04792        445 SP  446 (448)
T ss_pred             CC
Confidence            87

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.1e-12  Score=113.03  Aligned_cols=218  Identities=14%  Similarity=0.092  Sum_probs=138.9

Q ss_pred             CCCceEEEEEccCCCEEEEec-C---CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-E---TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d---~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +...+...+|+|||+.|+..+ +   ..|.+|++++++......+    .+......|+++++.+++..... .+..|.+
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~----~g~~~~~~~SpDG~~la~~~~~~-g~~~Iy~  271 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF----EGLNGAPAWSPDGSKLAFVLSKD-GNPEIYV  271 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC----CCCcCCeEECCCCCEEEEEEccC-CCceEEE
Confidence            456788999999999998766 3   3488889987654432222    33445678999999888765432 2357999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE--e----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ||+.+++......+........|+|++..++  .    ...|+++++.+++... +...........|+|+++.+++.. 
T Consensus       272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~-  349 (430)
T PRK00178        272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVH-  349 (430)
T ss_pred             EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEE-
Confidence            9998877554333555567789999998766  2    2368888887766432 222222234568899998754443 


Q ss_pred             CCCCe--eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC-C-eEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          155 GLLKG--QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG-T-LIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       155 g~~d~--~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                       ..++  .|.+++..+...+.+.. ........|+|||+.++..+.++ . .|.++++. +.....+..  +.+.+...+
T Consensus       350 -~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~~~~p~  424 (430)
T PRK00178        350 -RQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGEVREPS  424 (430)
T ss_pred             -ccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCCcCCCc
Confidence             2233  45666766655555543 22334678999999888776542 2 16667763 444444543  345677778


Q ss_pred             ecCC
Q 018248          231 FSSN  234 (359)
Q Consensus       231 ~s~~  234 (359)
                      |+|-
T Consensus       425 ws~~  428 (430)
T PRK00178        425 WSPY  428 (430)
T ss_pred             cCCC
Confidence            8763

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=5.3e-14  Score=116.94  Aligned_cols=205  Identities=12%  Similarity=0.120  Sum_probs=139.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|.+-|.|++|+.||.+|++|+ |-.+.|||.-..+.  ...+..||...|.++.|.|..+...++++.  .|..|+++
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgA--gDk~i~lf  122 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGA--GDKLIKLF  122 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEecc--CcceEEEE
Confidence            35899999999999999999999 88899999874333  355555999999999999876554444444  58999999


Q ss_pred             ECCCc----------cEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEccccee----------eeeEeccCCC
Q 018248           82 DDHEN----------RYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKL----------VDQIETVVNP  136 (359)
Q Consensus        82 d~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~----------~~~~~~~~~~  136 (359)
                      |+...          +....+. |...|..++..|++...+    .||+|+-||++....          +..+....-.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            98741          2333344 778888899888873332    999999999965311          1111111223


Q ss_pred             ceeeeeecCCCccEEEecCCCCeeEEEEecCC-------------------eeeEEe-eccc--------c---cccEEE
Q 018248          137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-------------------KKSKYI-TAHA--------S---RIASIA  185 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-------------------~~~~~~-~~~~--------~---~i~~~~  185 (359)
                      ..++.++|.... +|++ |..|-..++++.+.                   .+++.+ .+|-        .   .++-++
T Consensus       203 lk~ltisp~rp~-~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  203 LKCLTISPSRPY-YLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             eeeeeecCCCCc-eEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            457888888765 4555 66788888877321                   012221 1221        1   245678


Q ss_pred             EccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          186 MTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       186 ~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      |+|+|..|++.-.... |+++|+..++..
T Consensus       281 fnpNGtElLvs~~gEh-VYlfdvn~~~~~  308 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEH-VYLFDVNEDKSP  308 (758)
T ss_pred             ECCCCcEEEEeeCCeE-EEEEeecCCCCc
Confidence            9999986655544444 999998766543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.4e-12  Score=104.38  Aligned_cols=241  Identities=15%  Similarity=0.145  Sum_probs=165.6

Q ss_pred             CCCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            1 MNQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         1 m~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      |..+|.+.|.|++|+...+++.+|. +++|.+.|+++.+.+....-. ...+.|..+..+|..+.++.++    .++.|.
T Consensus       100 ~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t----~~~~V~  174 (609)
T KOG4227|consen  100 MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVT----RAKLVS  174 (609)
T ss_pred             ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEe----cCceEE
Confidence            4567889999999999999999999 999999999987666443311 1234888899999988888888    789999


Q ss_pred             EEECCCcc----EEeeeccCcceeEEEEecceeEEE----ecCeEEEEEccccee-eeeE---ecc---CCCceeeeeec
Q 018248           80 IWDDHENR----YLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKL-VDQI---ETV---VNPTGLCDVSQ  144 (359)
Q Consensus        80 iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~~~~---~~~---~~~~~~~~~~~  144 (359)
                      +||....+    ++..-........+.|+|....++    ..+.+-+||++..+. +...   .+.   ...-....|+|
T Consensus       175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~  254 (609)
T KOG4227|consen  175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP  254 (609)
T ss_pred             EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence            99987654    333333667788999999765444    678899999854332 1111   111   11124567888


Q ss_pred             CCCccEEEecCCCCeeEEE-EecCCeeeEEee-ccc-------ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----
Q 018248          145 NAGPMVMACPGLLKGQVRV-EDYGTKKSKYIT-AHA-------SRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----  211 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~-~~~-------~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----  211 (359)
                      ++..+ ++.   ..+..-+ ++.-.+....++ .|.       ..+.+++|--|-. +++|+.+-. |++|.+...    
T Consensus       255 ~G~Q~-msi---RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-i~~WklP~~~ds~  328 (609)
T KOG4227|consen  255 SGNQF-MSI---RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-IHIWKLPRANDSY  328 (609)
T ss_pred             CCCee-hhh---hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccc-eEEEecCCCcccc
Confidence            88763 222   2333333 443332222222 222       2466777865544 889999988 999987521    


Q ss_pred             -------------------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          212 -------------------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       212 -------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                                         +.+..+++  |.+-++.+.|+|...+|++.+-...++||.--.
T Consensus       329 G~~~IG~~~~~~~~~~~i~~~~~VLrG--HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  329 GFTQIGHDEEEMPSEIFIEKELTVLRG--HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             CccccCcchhhCchhheecceeEEEec--ccccccceeecCCcceEeccchhhheecccccc
Confidence                               12334555  778899999999999999999999999996543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.3e-13  Score=114.63  Aligned_cols=234  Identities=15%  Similarity=0.187  Sum_probs=156.7

Q ss_pred             eeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           90 GELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        90 ~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      .++. |.+-|.++.|+.+|.+++   .|-.+.|||.-..++++.+. +|...+.++.|-|.....++++ |..|..|+++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s-gAgDk~i~lf  122 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS-GAGDKLIKLF  122 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe-ccCcceEEEE
Confidence            3455 899999999999999999   78899999998888888874 5788899999999887777776 7789999997


Q ss_pred             ecCC-----------eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcE-------EEEee-cCCCCc
Q 018248          165 DYGT-----------KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSL-------LQEMR-RGAERA  224 (359)
Q Consensus       165 ~~~~-----------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~-------~~~~~-~~~~~~  224 (359)
                      +.+.           .+...+..|...|..++..|++ ..+.++++||+ |+-+|++....       ...+. ....--
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHHHHhchhhh
Confidence            7763           2344566789999999999998 68889999999 99999986321       11110 000113


Q ss_pred             ceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee-E
Q 018248          225 EIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA-Q  302 (359)
Q Consensus       225 ~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  302 (359)
                      ...++.++|.. .+|++|+.|-..++||.+...+.-........+.          ......+     ++|.+..... .
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p----------p~~~~cv-----~yf~p~hlkn~~  266 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP----------PKDCRCV-----RYFSPGHLKNSQ  266 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC----------Ccccchh-----heecCccccCcc
Confidence            56788999854 5789999999999999654332211111100000          0000001     1111111000 0


Q ss_pred             --EeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCC
Q 018248          303 --FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMK  340 (359)
Q Consensus       303 --~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~  340 (359)
                        ...-.-..+-++|+|+|.-|++.-..-.||++++...+
T Consensus       267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence              00000124567899999888877666789999887643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=6e-12  Score=109.00  Aligned_cols=218  Identities=11%  Similarity=0.051  Sum_probs=134.3

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEE--EEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEec
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNII--CLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRR  105 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  105 (359)
                      .|.+.|.+......   +. ........-.|+|+++.+  ++++... ....|.+.++.+++........+.....+|+|
T Consensus       166 ~l~~~d~dG~~~~~---lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP  240 (428)
T PRK01029        166 ELWSVDYDGQNLRP---LT-QEHSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQLMPTFSP  240 (428)
T ss_pred             eEEEEcCCCCCceE---cc-cCCCCcccceEccCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCccceEECC
Confidence            35566665443321   21 123445566899998764  3355432 24678899998886655444566666789999


Q ss_pred             ceeEEE--e--cC--e--EEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEe--cC--Cee
Q 018248          106 DRIVVV--L--NQ--K--VYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED--YG--TKK  170 (359)
Q Consensus       106 ~~~~~~--~--d~--~--i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~--~~--~~~  170 (359)
                      ||+.++  .  +|  .  +..|++..+   +...............+|+|+++.+++.+  ..+|...+|.  .+  +..
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECcccccc
Confidence            998777  3  22  3  344676542   32222222223335678999998744443  2355444443  32  233


Q ss_pred             eEEeecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC---C
Q 018248          171 SKYITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD---K  244 (359)
Q Consensus       171 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d  244 (359)
                      .+.+..+...+....|+|||+.|+..+.+   .. |.+||+.+++......   ....+....|+|||+.|+....   .
T Consensus       319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~  394 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQLTT---SPENKESPSWAIDSLHLVYSAGNSNE  394 (428)
T ss_pred             eEEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEEccC---CCCCccceEECCCCCEEEEEECCCCC
Confidence            45555555677889999999988876543   35 8999998887654332   2235678999999998875432   3


Q ss_pred             CcEEEEEccCCC
Q 018248          245 GTVHVFGLKVDS  256 (359)
Q Consensus       245 g~i~iw~~~~~~  256 (359)
                      ..|.++|+..++
T Consensus       395 ~~L~~vdl~~g~  406 (428)
T PRK01029        395 SELYLISLITKK  406 (428)
T ss_pred             ceEEEEECCCCC
Confidence            458888887765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=9.5e-13  Score=104.13  Aligned_cols=194  Identities=12%  Similarity=0.148  Sum_probs=134.8

Q ss_pred             CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-
Q 018248           95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-  169 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-  169 (359)
                      +..+..++|++.-..++   .|..|++||-.. +....++ .....+.+++|-|.+... ++. |. .+-|.+|..+.. 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsase-lav-gC-r~gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASE-LAV-GC-RAGICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcce-eee-ee-cceeEEEEcCccc
Confidence            45678899998654444   899999999755 4444443 245568899999987653 343 44 345777766531 


Q ss_pred             ----e----------eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248          170 ----K----------SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       170 ----~----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                          .          +..-.+| .+|++++|.+||..+++++.+...|.|||..++..+.....  ..+.+.-+.|||||
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPdg  250 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCCC
Confidence                1          1111233 68999999999999999987655599999999887766543  44688999999999


Q ss_pred             CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee
Q 018248          236 QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF  315 (359)
Q Consensus       236 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  315 (359)
                      .+|.+++-|+..++|+....-..                                     ..     ..+..+.|....|
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~-------------------------------------er-----w~lgsgrvqtacW  288 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTK-------------------------------------ER-----WILGSGRVQTACW  288 (445)
T ss_pred             CEEEEecccceeeeehhccccee-------------------------------------cc-----eeccCCceeeeee
Confidence            99999999999999966543200                                     00     1122357788899


Q ss_pred             cccCCEEEEEec-CCeEEEEEeC
Q 018248          316 GRQNNTIVIVGL-DGSYYKCEFD  337 (359)
Q Consensus       316 s~~~~~l~~~~~-dg~i~v~~~~  337 (359)
                      +|+|++|+.++. .-.+|-..++
T Consensus       289 spcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  289 SPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             cCCCCEEEEEEcCCceEEEEeec
Confidence            999988766554 4445444443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=1.2e-11  Score=104.44  Aligned_cols=234  Identities=15%  Similarity=0.165  Sum_probs=143.9

Q ss_pred             EEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248           10 HHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      ..+.|+|||+++.+++ |+.|.++|+.+.+.......    ......+++++++++++.+..   .++.+.++|.++.+.
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~  112 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANY---EPGTVSVIDAETLEP  112 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEE---ETTEEEEEETTT--E
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEec---CCCceeEeccccccc
Confidence            3477999999998888 99999999998876644443    455677899999998877664   469999999999999


Q ss_pred             Eeeecc--------CcceeEEEEeccee-EEE---ecCeEEEEEcccceee--eeEeccCCCceeeeeecCCCccEEEec
Q 018248           89 LGELSF--------RSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLV--DQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        89 ~~~~~~--------~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ++.+..        ...+..+..+|... +++   ..+.|.+.|..+.+.+  ..+.. .....-..|.|++++++++..
T Consensus       113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEG
T ss_pred             eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeeccc
Confidence            988762        23566777777765 444   4588888887655433  23332 233345677887776555432


Q ss_pred             CCCCeeEEEEecCC--------------------------------------------------------eeeEEeeccc
Q 018248          155 GLLKGQVRVEDYGT--------------------------------------------------------KKSKYITAHA  178 (359)
Q Consensus       155 g~~d~~v~~~~~~~--------------------------------------------------------~~~~~~~~~~  178 (359)
                        .++.+.+.+...                                                        +.++.+....
T Consensus       192 --~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G  269 (369)
T PF02239_consen  192 --GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG  269 (369)
T ss_dssp             --GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred             --ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence              222333322221                                                        1122222222


Q ss_pred             ccccEEEEccCCcEEEEE----eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC--CCcEEEEEc
Q 018248          179 SRIASIAMTLDGRFVATA----SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD--KGTVHVFGL  252 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~----~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iw~~  252 (359)
                      .+ .-+..+|+++++.+.    ...+. |.++|.++.+.+..+... ....+..+.|++||+.+..+..  ++.|.|||.
T Consensus       270 ~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  270 GG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             SS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             Cc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            23 566779999999988    34467 999999999888887643 1235899999999997655443  347999999


Q ss_pred             cCCC
Q 018248          253 KVDS  256 (359)
Q Consensus       253 ~~~~  256 (359)
                      ++.+
T Consensus       347 ~Tl~  350 (369)
T PF02239_consen  347 KTLK  350 (369)
T ss_dssp             TTTE
T ss_pred             CCcE
Confidence            9976

...

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=3.2e-13  Score=112.06  Aligned_cols=194  Identities=11%  Similarity=0.131  Sum_probs=127.5

Q ss_pred             cCCCEEEEec-CCceEEEEcCCCccee----eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           16 QDHGCFATGT-ETGFRVYLSDPYKPIM----RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        16 ~~g~~l~~~~-d~~i~iw~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      |++--+.+|- .|.+.+.+....+...    .+.+.   ...+.++.|.+..+.+++++-   .+|.+.+||.+-     
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~---ktsvT~ikWvpg~~~~Fl~a~---~sGnlyly~~~~-----  251 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLIN---KSSVTCIKWVPGSDSLFLVAH---ASGNLYLYDKEI-----  251 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhccccc---ccceEEEEEEeCCCceEEEEE---ecCceEEeeccc-----
Confidence            5566677777 7888888765421110    11121   467899999998887777765   569999998511     


Q ss_pred             eeccCcceeEEEEecceeEEEecCeEEEEEc-ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe
Q 018248           91 ELSFRSEVKNVRLRRDRIVVVLNQKVYVYNF-TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK  169 (359)
Q Consensus        91 ~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~  169 (359)
                        .....-.+....+++..+.    |..|.- .+..++..+......+...+|+||++.  ||+ -+.||.++|++....
T Consensus       252 --~~~~t~p~~~~~k~~~~f~----i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~--LA~-VSqDGfLRvF~fdt~  322 (636)
T KOG2394|consen  252 --VCGATAPSYQALKDGDQFA----ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY--LAT-VSQDGFLRIFDFDTQ  322 (636)
T ss_pred             --cccCCCCcccccCCCCeeE----EeeeeccccCCccceeEeccccccceeEcCCCce--EEE-EecCceEEEeeccHH
Confidence              1010011111122222222    111111 112344444444557778899998776  666 458999999887764


Q ss_pred             e-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          170 K-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       170 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                      . +..++.--+...|++|||||+||++|++|.- |.||.+...+.+..-.+  |.++|..++|.
T Consensus       323 eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGqG--HkSWVs~VaFD  383 (636)
T KOG2394|consen  323 ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQG--HKSWVSVVAFD  383 (636)
T ss_pred             HHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEeccc--cccceeeEeec
Confidence            4 3344556678999999999999999999998 99999988888776655  88999999997

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.55  E-value=1.9e-10  Score=97.28  Aligned_cols=240  Identities=22%  Similarity=0.254  Sum_probs=152.6

Q ss_pred             ceEEEEEccCCCEEEEec-C----CceEEEEcCCC--cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            8 TIHHLALNQDHGCFATGT-E----TGFRVYLSDPY--KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d----~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      ....++++|++++|.+.. .    +.|..|.++..  +........ ........+++.++++.++++..+   ++.|.+
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~---~g~v~v  113 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYG---GGSVSV  113 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETT---TTEEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEcc---CCeEEE
Confidence            346688999999998776 3    47888888753  333333322 123344567888888888887653   599999


Q ss_pred             EECCC-ccEEee---ec-----------cCcceeEEEEecceeEEE----ecCeEEEEEcccce--e--eeeEec-cCCC
Q 018248           81 WDDHE-NRYLGE---LS-----------FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLK--L--VDQIET-VVNP  136 (359)
Q Consensus        81 wd~~~-~~~~~~---~~-----------~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~--~--~~~~~~-~~~~  136 (359)
                      +++.. +.....   +.           ......++.++|++++++    ....|.+|++....  .  ...+.. ....
T Consensus       114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G  193 (345)
T PF10282_consen  114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG  193 (345)
T ss_dssp             EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred             EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence            99877 332222   21           124567899999998776    56799999996543  2  222322 2233


Q ss_pred             ceeeeeecCCCccEEEecCCCCeeEEEEecC--Ce---eeEEeecc------cccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248          137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYG--TK---KSKYITAH------ASRIASIAMTLDGRFVATASSKGTLIRV  205 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~---~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~~i~i  205 (359)
                      ...+.|+|+++..+++.  ..++.|.++...  ..   .+..+...      ......++++|||++|+++......|.+
T Consensus       194 PRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             EEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            45789999998877764  357778885444  22   22222211      1256789999999999887754433999


Q ss_pred             EEcC--CCc--EEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCC
Q 018248          206 FNTM--DGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVD  255 (359)
Q Consensus       206 wd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~  255 (359)
                      |++.  +++  .+..+..  .......++++|+|++|+++. .++.|.+|+++..
T Consensus       272 f~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             EEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence            9983  343  3334433  234589999999999998876 5678999998643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.54  E-value=9.9e-12  Score=102.74  Aligned_cols=291  Identities=9%  Similarity=0.042  Sum_probs=182.8

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-----------
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-----------   73 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-----------   73 (359)
                      ..-++..++|||.|++|++..-..|.+|........  ..+.   ...|..+.++|.++++..-.....           
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhhe--eeee---cCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence            345788999999999999998888999998876633  3332   577888899988888776542211           


Q ss_pred             CCCeEEEEECCCccEEeeec-cCcc--ee-EEEEecceeEEE--ecCeEEEEEcccceee-eeEec-cCCCceeeeeecC
Q 018248           74 QSNKVMIWDDHENRYLGELS-FRSE--VK-NVRLRRDRIVVV--LNQKVYVYNFTDLKLV-DQIET-VVNPTGLCDVSQN  145 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~-~~~~--v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~~~~~~  145 (359)
                      .++.+.+||+.+|..+..+. ...+  .+ -+.|+-+..+++  ....++|+++ +.... ..+.. ....+....++|.
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence            34579999999999999887 3333  44 678888888888  7788999986 22110 00000 0112222333333


Q ss_pred             CCccEEEec----CCCCeeE-----------------------------------------------------EEEecCC
Q 018248          146 AGPMVMACP----GLLKGQV-----------------------------------------------------RVEDYGT  168 (359)
Q Consensus       146 ~~~~~l~~~----g~~d~~v-----------------------------------------------------~~~~~~~  168 (359)
                      ++...+|+-    +...+.+                                                     ++...+.
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence            222111110    0111222                                                     2222222


Q ss_pred             eeeEEeecccccccEEEEccCCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC--
Q 018248          169 KKSKYITAHASRIASIAMTLDGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK--  244 (359)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--  244 (359)
                      ..+.......++|...+|.|.++.+++.+  .+.. +.++|++.. ....+.    +..=+.+.|||.+++++.++-|  
T Consensus       265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~-~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl  338 (561)
T COG5354         265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS-VSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNL  338 (561)
T ss_pred             cccceeccccccceeeeecccCCceeEEecccccc-eeecccccc-eEEecC----CcccccccccCcccEEEEecCCcc
Confidence            22222224467899999999998776655  5667 999998766 444443    2455678899999999998765  


Q ss_pred             -CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEE
Q 018248          245 -GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIV  323 (359)
Q Consensus       245 -g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  323 (359)
                       |.+-+||....-..                           +.     -+.           .....-+.|+||++++.
T Consensus       339 ~gni~i~~~~~rf~~---------------------------~~-----~~~-----------~~n~s~~~wspd~qF~~  375 (561)
T COG5354         339 QGNIEIFDPAGRFKV---------------------------AG-----AFN-----------GLNTSYCDWSPDGQFYD  375 (561)
T ss_pred             ccceEEeccCCceEE---------------------------EE-----Eee-----------cCCceEeeccCCceEEE
Confidence             67999998775411                           00     011           11234578999999988


Q ss_pred             EEec------CCeEEEEEeCCCCCCceEEeeec
Q 018248          324 IVGL------DGSYYKCEFDPMKGGEMHQLEHY  350 (359)
Q Consensus       324 ~~~~------dg~i~v~~~~~~~~~~~~~~~~~  350 (359)
                      +...      |..+.+|++.-..--++..+.|.
T Consensus       376 ~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~  408 (561)
T COG5354         376 TDTTSEKLRVDNSIKLWDVYGAKVFELTNITWD  408 (561)
T ss_pred             ecCCCcccccCcceEEEEecCchhhhhhhcccc
Confidence            7764      78899999865433333344443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1e-11  Score=103.79  Aligned_cols=278  Identities=12%  Similarity=0.202  Sum_probs=178.9

Q ss_pred             EEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-------CCCeEEEEE
Q 018248           10 HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-------QSNKVMIWD   82 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-------~d~~i~iwd   82 (359)
                      +.+.|||.|+||++-....|.+|--+.....  +.|.  | ..|..+.++|+.++++..+....       ....++|||
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~--H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY--H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc--C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            5789999999999998888999987765555  4453  4 56889999999999987764332       236899999


Q ss_pred             CCCccEEeeecc---Ccce-eEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           83 DHENRYLGELSF---RSEV-KNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        83 ~~~~~~~~~~~~---~~~v-~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +.+|...+.+..   +..+ .-+.||.|+++++  ....|.||+..+..++..-...-..+....|+|.+.  +||+=.-
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~--llAYwtp  366 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN--LLAYWTP  366 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcc--eEEEEcc
Confidence            999998888862   2223 2468999999999  778999999765444332222334455566777644  3554111


Q ss_pred             C--C--eeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeC----------CCCeEEEEEcCCCcE-EEEeecC
Q 018248          157 L--K--GQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASS----------KGTLIRVFNTMDGSL-LQEMRRG  220 (359)
Q Consensus       157 ~--d--~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~~i~iwd~~~~~~-~~~~~~~  220 (359)
                      .  +  ..+.+ -..+.+.++...-+.-.=..+-|..+|.+|+.--.          -.. +.|+.++.... +..+.  
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve--  443 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE--  443 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee--
Confidence            1  1  12223 22333444444444444455677788888864311          112 56666655442 22232  


Q ss_pred             CCCcceEEEEecCCCCEEEEEcC---CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecc
Q 018248          221 AERAEIYSLAFSSNAQWLAASSD---KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK  297 (359)
Q Consensus       221 ~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (359)
                       -...|..++|-|.|..+++-+.   ..++.+|.+++....+                        .+++     .    
T Consensus       444 -lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~------------------------~lVk-----~----  489 (698)
T KOG2314|consen  444 -LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP------------------------SLVK-----E----  489 (698)
T ss_pred             -cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch------------------------hhhh-----h----
Confidence             2357899999999987766543   3568899888532110                        0111     1    


Q ss_pred             cceeEEeecCCcEEEeeecccCCEEEEEec---CCeEEEEEeCC
Q 018248          298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGL---DGSYYKCEFDP  338 (359)
Q Consensus       298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~v~~~~~  338 (359)
                             ++.-..+.+.|+|.|++++++.-   .|.+..++.+.
T Consensus       490 -------~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  490 -------LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             -------hcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence                   11224477999999999888765   68899888774

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=1.2e-12  Score=116.71  Aligned_cols=194  Identities=16%  Similarity=0.209  Sum_probs=142.4

Q ss_pred             ceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCc--eeeeeecCCCccEEEecCCCCeeEEEEecCCeee
Q 018248           97 EVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPT--GLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS  171 (359)
Q Consensus        97 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~  171 (359)
                      .|....+..+...++   .++.+.+||...+.....+.......  .++-+-...+..++++ |+.-+.|.+|.......
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccCC
Confidence            333333333443333   88899999988777766654433211  1122233445566776 77889999987764332


Q ss_pred             E-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE-EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEE
Q 018248          172 K-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ-EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV  249 (359)
Q Consensus       172 ~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  249 (359)
                      . .+.+|.+.|.++.++.||+++++.|+|.+ +++|++.+.+... ..-+  |.+.|+.+.|.|+  .+++++.|.+.++
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccccc--ccceeEEEEeccc--eeEEeccceEEEE
Confidence            2 58899999999999999999999999999 9999999988776 3333  8899999999998  9999999999999


Q ss_pred             EEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCcEEEeeecccCCEEEEEecC
Q 018248          250 FGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENVQYLVGFGRQNNTIVIVGLD  328 (359)
Q Consensus       250 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d  328 (359)
                      |+.+-.+                                 +..          ++.| ...+..++..++...+++++.|
T Consensus       243 W~~~~~~---------------------------------l~~----------y~~h~g~~iw~~~~~~~~~~~vT~g~D  279 (967)
T KOG0974|consen  243 WGVNGTQ---------------------------------LEV----------YDEHSGKGIWKIAVPIGVIIKVTGGND  279 (967)
T ss_pred             Eecccce---------------------------------ehh----------hhhhhhcceeEEEEcCCceEEEeeccC
Confidence            9665433                                 110          1112 2467889999999999999999


Q ss_pred             CeEEEEEeCCC
Q 018248          329 GSYYKCEFDPM  339 (359)
Q Consensus       329 g~i~v~~~~~~  339 (359)
                      |.+++|++...
T Consensus       280 s~lk~~~l~~r  290 (967)
T KOG0974|consen  280 STLKLWDLNGR  290 (967)
T ss_pred             cchhhhhhhcc
Confidence            99999987654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.53  E-value=4.6e-10  Score=92.82  Aligned_cols=265  Identities=12%  Similarity=0.097  Sum_probs=162.7

Q ss_pred             CCCEEEEec-C-----CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEec-------CCCCCCeEEEEEC
Q 018248           17 DHGCFATGT-E-----TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS-------GPHQSNKVMIWDD   83 (359)
Q Consensus        17 ~g~~l~~~~-d-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------~~~~d~~i~iwd~   83 (359)
                      ++..+.+.. .     +.|.+.|.++.+.+-....  |...  ..+ ++++++.+.++..       |. .+..|.+||.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~--G~~P--~~~-~spDg~~lyva~~~~~R~~~G~-~~d~V~v~D~   84 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDG--GFLP--NPV-VASDGSFFAHASTVYSRIARGK-RTDYVEVIDP   84 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEc--cCCC--cee-ECCCCCEEEEEeccccccccCC-CCCEEEEEEC
Confidence            445554444 3     7899999998765543333  2222  223 8899888887775       11 3689999999


Q ss_pred             CCccEEeeeccCcc--------eeEEEEecceeEEE----e-cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248           84 HENRYLGELSFRSE--------VKNVRLRRDRIVVV----L-NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        84 ~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~----~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      .+.+.+.++..+..        ...++++|+|++++    . +..|.+.|+.+++.+..+..... ...... .... .+
T Consensus        85 ~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t-~e~~-~~  161 (352)
T TIGR02658        85 QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPT-ANDT-FF  161 (352)
T ss_pred             ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEe-cCCc-cE
Confidence            99999999874333        23789999998776    3 78999999999999998876432 222222 2222 22


Q ss_pred             EEecCCCCeeEEE--EecCCeee-E---Eeecccccc-cEEEEcc-CCcEEEEEeCCCCeEEEEEcCC-----CcEEEEe
Q 018248          151 MACPGLLKGQVRV--EDYGTKKS-K---YITAHASRI-ASIAMTL-DGRFVATASSKGTLIRVFNTMD-----GSLLQEM  217 (359)
Q Consensus       151 l~~~g~~d~~v~~--~~~~~~~~-~---~~~~~~~~i-~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~-----~~~~~~~  217 (359)
                      +.|   .||....  .+.+++.. .   .+.....++ ..-.|.+ +|+++.+..+ |. |.+.|+..     .+....+
T Consensus       162 ~~~---~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~  236 (352)
T TIGR02658       162 MHC---RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAF  236 (352)
T ss_pred             EEe---ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeec
Confidence            222   2333332  22222211 1   111101110 0114455 8888877777 88 99999543     2333322


Q ss_pred             ec-----CCCCcceEEEEecCCCCEEEEEcC----------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          218 RR-----GAERAEIYSLAFSSNAQWLAASSD----------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       218 ~~-----~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                      ..     +..++.+.-++++|+++.+.....          .+.|.++|..+.+..                        
T Consensus       237 ~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi------------------------  292 (352)
T TIGR02658       237 TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL------------------------  292 (352)
T ss_pred             cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE------------------------
Confidence            21     123345556999999998877431          246888888877621                        


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEe-cCCeEEEEEeCC
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVG-LDGSYYKCEFDP  338 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~v~~~~~  338 (359)
                               ..         +.. ...+..++|+||++ .|++.. .++.|.+++...
T Consensus       293 ---------~~---------i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       293 ---------RK---------IEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             ---------EE---------EeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence                     00         111 23567899999999 888777 478899998655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=5.3e-10  Score=89.17  Aligned_cols=276  Identities=13%  Similarity=0.143  Sum_probs=173.0

Q ss_pred             CCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--ccEE--eeec-cCcce
Q 018248           26 ETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--NRYL--GELS-FRSEV   98 (359)
Q Consensus        26 d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--~~~~--~~~~-~~~~v   98 (359)
                      +..|++|++++..  .......  .+.+..+.+++.++.+.+..+.... .++.|..|.+..  |+..  .... ...+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v--~~~~nptyl~~~~~~~~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLV--AELGNPTYLAVNPDQRHLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhc--cccCCCceEEECCCCCEEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence            5679999998432  2222222  4577888999999888877766433 468888877664  4332  2222 33444


Q ss_pred             eEEEEecceeEEE----ecCeEEEEEccc-ceeeeeE--eccCCC----------ceeeeeecCCCccEEEecCCCCeeE
Q 018248           99 KNVRLRRDRIVVV----LNQKVYVYNFTD-LKLVDQI--ETVVNP----------TGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        99 ~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      ..+++++++++++    ..|.|.++-++. |.+....  ..|...          +....+.|+++.++...  -.-..|
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D--LG~Dri  169 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD--LGTDRI  169 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee--cCCceE
Confidence            8899999998887    678999999854 4332221  112222          55677888887643332  223356


Q ss_pred             EEEecCCeeeEEe----ecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCC-cEEEEeec------C-CCCcceEE
Q 018248          162 RVEDYGTKKSKYI----TAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDG-SLLQEMRR------G-AERAEIYS  228 (359)
Q Consensus       162 ~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~-~~~~~~~~------~-~~~~~i~~  228 (359)
                      .+++.+...+...    .......+.|.|+|++++..+.++ +++ |.+|..... ..+.+++.      . ........
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st-V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa  248 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST-VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA  248 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE-EEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence            6655543222221    133456789999999998877765 666 999998763 22222221      1 02346678


Q ss_pred             EEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248          229 LAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE  307 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                      +.++|||++|.++.. ...|-+|.+.....                        .+.++..+     ..         ..
T Consensus       249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g------------------------~L~~~~~~-----~t---------eg  290 (346)
T COG2706         249 IHISPDGRFLYASNRGHDSIAVFSVDPDGG------------------------KLELVGIT-----PT---------EG  290 (346)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEcCCCC------------------------EEEEEEEe-----cc---------CC
Confidence            899999999987653 23688888876541                        12222211     11         11


Q ss_pred             CcEEEeeecccCCEEEEEecC-CeEEEEEeCCCCCCceEE
Q 018248          308 NVQYLVGFGRQNNTIVIVGLD-GSYYKCEFDPMKGGEMHQ  346 (359)
Q Consensus       308 ~~v~~~~~s~~~~~l~~~~~d-g~i~v~~~~~~~~~~~~~  346 (359)
                      -..+...|++++++|+++..+ ..|.+|.+++++| ++.+
T Consensus       291 ~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG-~L~~  329 (346)
T COG2706         291 QFPRDFNINPSGRFLIAANQKSDNITVFERDKETG-RLTL  329 (346)
T ss_pred             cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc-eEEe
Confidence            224678899999999999984 5799999998764 4433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=2.8e-10  Score=90.74  Aligned_cols=245  Identities=18%  Similarity=0.208  Sum_probs=166.8

Q ss_pred             CCCceEEEEEccCCCEEEEec----CCceEEEEcCC--CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            5 DPITIHHLALNQDHGCFATGT----ETGFRVYLSDP--YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      +...++-|+|+|++++|.++.    ++.|..|.++.  ++..+..... ....+...++++.++.+++.+.-.   -+.|
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~---~g~v  113 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYH---SGSV  113 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEcc---CceE
Confidence            456788999999999997775    36788888875  4433322221 113333678888888888877764   4999


Q ss_pred             EEEECCC-cc---EEeeeccCcc----------eeEEEEecceeEEE----ecCeEEEEEcccceeeee----EeccCCC
Q 018248           79 MIWDDHE-NR---YLGELSFRSE----------VKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQ----IETVVNP  136 (359)
Q Consensus        79 ~iwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~----~~~~~~~  136 (359)
                      .++-+.. |.   .+..+.|.+.          +....+.|++++++    .-..|.+|++..++....    ++. ...
T Consensus       114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~-G~G  192 (346)
T COG2706         114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP-GAG  192 (346)
T ss_pred             EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC-CCC
Confidence            9999865 42   2334445554          88899999998887    567899999987654322    222 233


Q ss_pred             ceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeec---------ccccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248          137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITA---------HASRIASIAMTLDGRFVATASSKGTLIRV  205 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~~i~i  205 (359)
                      ..-+.|+|+++..++++  --+++|.+|..+.  ..+..++.         .......|.++|||++|.++..--..|.+
T Consensus       193 PRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         193 PRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             cceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            45799999999877775  3588899876665  33333322         23466788999999999888653333888


Q ss_pred             EEcCCC-cEEEEeec-CCCCcceEEEEecCCCCEEEEEcCC-CcEEEEEccCCC
Q 018248          206 FNTMDG-SLLQEMRR-GAERAEIYSLAFSSNAQWLAASSDK-GTVHVFGLKVDS  256 (359)
Q Consensus       206 wd~~~~-~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~  256 (359)
                      |.+... ..+..+.. ..+......+.|++.|++|+++..+ ..|.+|.++...
T Consensus       271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            877542 22222221 1133457899999999999988865 469999987655

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.51  E-value=2.5e-10  Score=106.99  Aligned_cols=311  Identities=13%  Similarity=0.134  Sum_probs=191.1

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEE----EcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVY----LSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      ..+.|.++.|-++...++++. +|.|.+.    +.+.......-.+    ..++.+++|+|+...+++++    .++++.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v----d~GI~a~~WSPD~Ella~vT----~~~~l~  145 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV----DSGILAASWSPDEELLALVT----GEGNLL  145 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE----cCcEEEEEECCCcCEEEEEe----CCCEEE
Confidence            457899999999999888888 9999999    5555444444555    68999999999999999999    457776


Q ss_pred             EEECCCccEE------------------------eeec-------------------------cCcceeEEEEecceeEE
Q 018248           80 IWDDHENRYL------------------------GELS-------------------------FRSEVKNVRLRRDRIVV  110 (359)
Q Consensus        80 iwd~~~~~~~------------------------~~~~-------------------------~~~~v~~~~~~~~~~~~  110 (359)
                      +.. .+.+.+                        .+|.                         ....-..++|-.||.++
T Consensus       146 ~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF  224 (928)
T PF04762_consen  146 LMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF  224 (928)
T ss_pred             EEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence            654 111111                        1110                         11233467899999998


Q ss_pred             E-------e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC--CeeEEEEecCCeeeEEee----
Q 018248          111 V-------L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL--KGQVRVEDYGTKKSKYIT----  175 (359)
Q Consensus       111 ~-------~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--d~~v~~~~~~~~~~~~~~----  175 (359)
                      +       .  -..++||+- .|+...+-+.-.+--..++|.|.|..  +|++-..  ...|.++.++|-.-..|.    
T Consensus       225 AVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~l--IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~  301 (928)
T PF04762_consen  225 AVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNL--IASSQRLPDRHDVVFFERNGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCE--EEEEEEcCCCcEEEEEecCCcEeeeEecCCC
Confidence            8       1  258999995 47655555444444456788888864  5553222  234444888875444432    


Q ss_pred             cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc--EEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEc
Q 018248          176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS--LLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGL  252 (359)
Q Consensus       176 ~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~  252 (359)
                      .....|..+.|++|+..||..-.|.  |.+|-..+..  ..+++... ....+..+.|+|.. ..|...+.+|.+..+++
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            3456899999999999999977664  9999987764  33344322 22345569999954 45666776677766554


Q ss_pred             cCCCCCCCCCccccCCCCC--ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCe
Q 018248          253 KVDSGSPGTSKLHSASEPN--LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGS  330 (359)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  330 (359)
                      .-.....       ....+  .+......+..+.+. .+......+--+...+.++ ..|..++|++++..+++...||.
T Consensus       379 ~~~v~~s-------~~~~~~D~g~vaVIDG~~lllT-pf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~avl~~d~~  449 (928)
T PF04762_consen  379 AWDVSRS-------PGSSPNDNGTVAVIDGNKLLLT-PFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRFAVLTSDGS  449 (928)
T ss_pred             EEEEEec-------CCCCccCceEEEEEeCCeEEEe-cccccCCCchHhceEEcCC-CCcEEEEEeCCCCeEEEEECCCC
Confidence            3221000       00000  000001111111100 0000000011111224443 57899999999888999999999


Q ss_pred             EEEEEeCCC
Q 018248          331 YYKCEFDPM  339 (359)
Q Consensus       331 i~v~~~~~~  339 (359)
                      +.+|.++..
T Consensus       450 l~~~~~~~~  458 (928)
T PF04762_consen  450 LSIYEWDLK  458 (928)
T ss_pred             EEEEEecCC
Confidence            999997664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.1e-11  Score=105.72  Aligned_cols=222  Identities=8%  Similarity=-0.012  Sum_probs=137.6

Q ss_pred             CCceEEEEEccCCCEEE---Eec-CC--ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeE
Q 018248            6 PITIHHLALNQDHGCFA---TGT-ET--GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKV   78 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~---~~~-d~--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i   78 (359)
                      ...+.+-+|||||+.++   +.. ++  .|.+.++++++......+    .+......|+|+++.+++++.... .+-.+
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~----~g~~~~p~wSPDG~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL----QGNQLMPTFSPRKKLLAFISDRYGNPDLFI  259 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC----CCCccceEECCCCCEEEEEECCCCCcceeE
Confidence            34566789999998632   333 43  477778887765544444    344456789999999988774210 23344


Q ss_pred             EEEECCCc---cEEeeecc-CcceeEEEEecceeEEE----ecCe--EEEEEccc-ceeeeeEeccCCCceeeeeecCCC
Q 018248           79 MIWDDHEN---RYLGELSF-RSEVKNVRLRRDRIVVV----LNQK--VYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        79 ~iwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~~~----~d~~--i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      .+|++..+   +....... .......+|+|||+.++    .++.  |+++++.. +.....+......+....|+|+++
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence            55776653   33333322 23446789999998776    3454  44555432 233344443444556788999998


Q ss_pred             ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          148 PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      .++++........|.+++..+...+.+......+....|+|||+.|+..+.   ... |.++|+.+++......   ..+
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~---~~g  415 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI---GSG  415 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec---CCC
Confidence            744443211234677788877666666655556788999999998875443   245 8888988777654443   234


Q ss_pred             ceEEEEecCCC
Q 018248          225 EIYSLAFSSNA  235 (359)
Q Consensus       225 ~i~~~~~s~~~  235 (359)
                      .+...+|+|-.
T Consensus       416 ~~~~p~Ws~~~  426 (428)
T PRK01029        416 EKRFPSWGAFP  426 (428)
T ss_pred             cccCceecCCC
Confidence            56778888753

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.49  E-value=8.8e-14  Score=121.07  Aligned_cols=229  Identities=14%  Similarity=0.150  Sum_probs=174.0

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD  123 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~  123 (359)
                      ||...|.|+.+.-.+.+++..+    .|..++||..+++.++.... |.+.|+.++.+.++.+++   .|..|++|.+.+
T Consensus       188 gH~naVyca~fDrtg~~Iitgs----dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGS----DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             hhhhheeeeeeccccceEeecC----ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            8999999999888888887777    78999999999999999998 999999999999888877   788899999999


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee-----cccccccEEEEccCCcEEEEEeC
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT-----AHASRIASIAMTLDGRFVATASS  198 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~  198 (359)
                      +.++..+.+|.+.++.++|+|-.      + .+.||++++|+.+..+.....     .....+.++.|..++.-++|++.
T Consensus       264 ~~pvsvLrghtgavtaiafsP~~------s-ss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPRA------S-SSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CchHHHHhccccceeeeccCccc------c-CCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99999999999999999999965      2 457999999998843332221     12345677888888888999999


Q ss_pred             CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCC
Q 018248          199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNS  277 (359)
Q Consensus       199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (359)
                      |+. -..|.+.....        +...+.-+.++.| ..+.+++-.+-.+++|++.++....                  
T Consensus       337 d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H------------------  389 (1113)
T KOG0644|consen  337 DGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH------------------  389 (1113)
T ss_pred             Ccc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh------------------
Confidence            998 77776532211        1111111222222 2466677778889999999886221                  


Q ss_pred             CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCC
Q 018248          278 SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~  338 (359)
                                     .         ...+.+.+..+.++|-+ +...+++.||...||++-.
T Consensus       390 ---------------~---------l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e  427 (1113)
T KOG0644|consen  390 ---------------N---------LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE  427 (1113)
T ss_pred             ---------------h---------hcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence                           0         22344677889999944 5667888999999999865

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=4.9e-12  Score=101.09  Aligned_cols=208  Identities=14%  Similarity=0.149  Sum_probs=144.8

Q ss_pred             CCCEEEEecCCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-
Q 018248           17 DHGCFATGTETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-   93 (359)
Q Consensus        17 ~g~~l~~~~d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-   93 (359)
                      ||.++++-++|.+.+|..+.+.  ......+.  -..++..+.-.+....++..+|-. .-..+.+||+++.+.+.+-+ 
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke-~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKE-NINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchh-cccceeeeecccceeeeeccC
Confidence            5555566559999999988432  11112221  134455555555445555444422 23789999999886665543 


Q ss_pred             ---------cCcceeEEEEecc--eeEEE---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           94 ---------FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        94 ---------~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                               .+-.++++.|-+.  ...++   .-+++++||.+.+ +++..+.....++.++...|+++.++  + |...
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy--~-gn~~  268 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY--T-GNTK  268 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE--E-eccc
Confidence                     1224567888776  45554   7899999999654 56777877888999999999988633  3 5578


Q ss_pred             eeEEEEecCC-eeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          159 GQVRVEDYGT-KKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       159 ~~v~~~~~~~-~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +.+..++.++ ..... +.+-.+.|+++..+|.+++||+++-|.. |+|+|+++.+++.....   .+.++++.+.++
T Consensus       269 g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv---Ks~lt~il~~~~  342 (412)
T KOG3881|consen  269 GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV---KSRLTFILLRDD  342 (412)
T ss_pred             chhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh---hccccEEEecCC
Confidence            8888866655 44433 6788999999999999999999999999 99999999777766553   345677777654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.46  E-value=4e-11  Score=94.49  Aligned_cols=205  Identities=11%  Similarity=0.196  Sum_probs=139.2

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE-CCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD-DHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNF  121 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~  121 (359)
                      ||.+.+......+..+.++.++    .|.++++|- ...++.-..+.  .+.+++++.+.++...++   .+|++.-+.+
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s----~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVS----EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             CchhhhhhheeccCCCCeEEcc----ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            8888888888888888999888    799999995 34455555554  467888899988876665   7777777765


Q ss_pred             c----cceeeeeEeccCCCceeeeeecCCCc------------------------------------cEEEecCCCCeeE
Q 018248          122 T----DLKLVDQIETVVNPTGLCDVSQNAGP------------------------------------MVMACPGLLKGQV  161 (359)
Q Consensus       122 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~l~~~g~~d~~v  161 (359)
                      .    ....++....|...+..+-++-..+.                                    ...+..|...|.|
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv  177 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI  177 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence            2    11112222222222222222111111                                    0011223333444


Q ss_pred             EE---EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE-EEeecCCCCcceEEEEecCCCCE
Q 018248          162 RV---EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL-QEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       162 ~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      .+   .......+..+.+|.+.+.+++|.|....|.+|..|.. +.+||+.-.+-+ .++.+  |...|..+..-+--+.
T Consensus       178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g--h~~kV~~l~~~~~t~~  254 (404)
T KOG1409|consen  178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG--HNDKVQALSYAQHTRQ  254 (404)
T ss_pred             EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--chhhhhhhhhhhhhee
Confidence            33   33334667788899999999999999999999999999 999999755433 33443  6678888888888889


Q ss_pred             EEEEcCCCcEEEEEccCCCCCC
Q 018248          238 LAASSDKGTVHVFGLKVDSGSP  259 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~~  259 (359)
                      |.+++.||.|.+|+.+....+.
T Consensus       255 l~S~~edg~i~~w~mn~~r~et  276 (404)
T KOG1409|consen  255 LISCGEDGGIVVWNMNVKRVET  276 (404)
T ss_pred             eeeccCCCeEEEEeccceeecC
Confidence            9999999999999998766443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.45  E-value=3.5e-11  Score=109.43  Aligned_cols=268  Identities=10%  Similarity=0.061  Sum_probs=161.8

Q ss_pred             eeeecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEECCC-------ccEEeeec-cCcceeEEEEecceeEEE
Q 018248           41 MRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDDHE-------NRYLGELS-FRSEVKNVRLRRDRIVVV  111 (359)
Q Consensus        41 ~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~  111 (359)
                      ....+. .|...+..++.+... .+++.++    .||+|++|+...       .+...++. ....+.++.+.+.+..++
T Consensus      1040 lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS----~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLH-EHSSAVIKLAVSSEHTSLFVSGS----DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             Eeehhh-hccccccceeecCCCCceEEEec----CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            334443 566666666665544 4444444    689999999653       13334444 567888899888887777


Q ss_pred             ---ecCeEEEEEcccc--e-----eeeeEeccC--CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeee---EEeec
Q 018248          112 ---LNQKVYVYNFTDL--K-----LVDQIETVV--NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS---KYITA  176 (359)
Q Consensus       112 ---~d~~i~i~d~~~~--~-----~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~---~~~~~  176 (359)
                         .||.|.+.++...  +     .......+.  .-+...++........+++ +..-+.+..|+......   .....
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcCc
Confidence               8999999998542  1     111111111  1222333333333323444 33556666687765321   12233


Q ss_pred             ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC---CCEEEEEc--CCCcEEEEE
Q 018248          177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN---AQWLAASS--DKGTVHVFG  251 (359)
Q Consensus       177 ~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~--~dg~i~iw~  251 (359)
                      ..+.|++++.+|.+.++++|+..|. +.+||++=+.++....-. +..+|..+..+|-   ....++++  ..+.|.+|+
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            4678999999999999999999999 999999999988888744 4478888887763   34555554  467799999


Q ss_pred             ccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeE
Q 018248          252 LKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSY  331 (359)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  331 (359)
                      +.++......-....             ...+..   .+|..  ..     .+-+.-....+++..-+..+++|+.|+.|
T Consensus      1272 ~~~g~~~~vl~~s~~-------------~p~ls~---~~Ps~--~~-----~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDG-------------APILSY---ALPSN--DA-----RKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred             cccCcceEEEEcCCC-------------Ccchhh---hcccc--cC-----CCCCcccceeeecccCCceeeecCCccce
Confidence            999864321100000             000000   00000  00     00011122345555566899999999999


Q ss_pred             EEEEeCCC
Q 018248          332 YKCEFDPM  339 (359)
Q Consensus       332 ~v~~~~~~  339 (359)
                      +.|+....
T Consensus      1329 R~wD~~~p 1336 (1431)
T KOG1240|consen 1329 RKWDPTRP 1336 (1431)
T ss_pred             eeccCCCc
Confidence            99987653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=1.5e-09  Score=89.87  Aligned_cols=234  Identities=13%  Similarity=0.085  Sum_probs=148.7

Q ss_pred             EccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccC-C---CCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248           14 LNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRN-P---RGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus        14 ~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~-h---~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      +||||+.|+++.           +..|.+||..+.+......+... +   ......++++++++.+++..-.  .+..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~--p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS--PSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC--CCCEE
Confidence            899999886654           37799999999877755554200 0   1122367888888888766543  36999


Q ss_pred             EEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEccc-ceee-ee---EeccCCCce-eeeeec-CCCccE
Q 018248           79 MIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTD-LKLV-DQ---IETVVNPTG-LCDVSQ-NAGPMV  150 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~-~~---~~~~~~~~~-~~~~~~-~~~~~~  150 (359)
                      .+.|+.+++.+.++..++...-...+++...+. .||......+.+ ++.. ..   +.....++. .-.+.+ ++.. +
T Consensus       131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-~  209 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-V  209 (352)
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE-E
Confidence            999999999999988655444444444444433 666666654422 2211 11   111000000 013345 5543 3


Q ss_pred             EEecCCCCeeEEEEecCC------eeeEEeec-------ccccccEEEEccCCcEEEEEe----------CCCCeEEEEE
Q 018248          151 MACPGLLKGQVRVEDYGT------KKSKYITA-------HASRIASIAMTLDGRFVATAS----------SKGTLIRVFN  207 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~------~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~----------~dg~~i~iwd  207 (359)
                      .++   ..|.|.+-+..+      .....+..       ..+.+.-++++|+++.+++..          ..+. |.++|
T Consensus       210 ~vs---~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ViD  285 (352)
T TIGR02658       210 WPT---YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVVD  285 (352)
T ss_pred             EEe---cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEEE
Confidence            332   248999855332      11222111       123344599999999887743          1135 99999


Q ss_pred             cCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEEc-CCCcEEEEEccCCCC
Q 018248          208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAASS-DKGTVHVFGLKVDSG  257 (359)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~  257 (359)
                      ..+++.+..+..+   ..+..++++||++ +|++.+ .++.|.+.|..+++.
T Consensus       286 ~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       286 AKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             CCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            9999999998853   4789999999999 777666 578899999998863

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1e-09  Score=94.58  Aligned_cols=174  Identities=14%  Similarity=0.079  Sum_probs=112.5

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeE-EE----e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIV-VV----L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      ...|.+-|..... .+.+..........|+|+|+. ++    .  +..|+++|+.+++...... ..+......|+|+++
T Consensus       168 ~~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        168 KSNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             cceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            3577777754433 443443347788999999974 44    2  4679999998876544433 344445678999998


Q ss_pred             ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC-C--CeEEEEEcCCCcEEEEeecCCCCc
Q 018248          148 PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK-G--TLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      .+++......+..|++.+..+...+.+..+........|+|||+.|+..+.. +  . |.+.|+.+++..+....+ .  
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~-Iy~~dl~~g~~~rlt~~g-~--  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN-IFMKKLNSGSVEQVVFHG-K--  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCce-EEEEECCCCCeEeCccCC-C--
Confidence            8665543333456777666666666666555444567899999977766543 2  4 888888877764433221 1  


Q ss_pred             ceEEEEecCCCCEEEEEcCC---------CcEEEEEccCCC
Q 018248          225 EIYSLAFSSNAQWLAASSDK---------GTVHVFGLKVDS  256 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~d---------g~i~iw~~~~~~  256 (359)
                        ....|||||+.|+..+..         ..|.+.|++++.
T Consensus       322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence              124899999988776543         256677776654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=9.3e-11  Score=98.53  Aligned_cols=202  Identities=8%  Similarity=0.104  Sum_probs=138.6

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEE-ecceeE--EE-ecCeEEEEEccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRL-RRDRIV--VV-LNQKVYVYNFTD  123 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~-~d~~i~i~d~~~  123 (359)
                      +|....+.+.+++++.+++..+.   ....|++||+.+-.+...-.....+..+.. +.|-.-  ++ .|.+|.+... -
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~---YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGT---YKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-Y  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecc---cCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-c
Confidence            57777888999999998876665   568999999876554444334444444443 333222  22 7778777653 2


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLI  203 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i  203 (359)
                      |. -..+..+ .....++++.-.-.++++  |+....-++....+.-+..+....+.++++..++-..+|++|+.+|. |
T Consensus       125 G~-hy~~RIP-~~GRDm~y~~~scDly~~--gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-V  199 (703)
T KOG2321|consen  125 GR-HYRTRIP-KFGRDMKYHKPSCDLYLV--GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-V  199 (703)
T ss_pred             Ce-eeeeecC-cCCccccccCCCccEEEe--ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCce-E
Confidence            21 1111111 112234444333334444  33344555566777888888888899999999999999999999999 9


Q ss_pred             EEEEcCCCcEEEEeecCC----CC-----cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          204 RVFNTMDGSLLQEMRRGA----ER-----AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~----~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      ..||.++...+..+....    ++     ..|+++.|+.+|-.+++|+.+|.|.|||+++.++.
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence            999999887766655321    22     24999999999999999999999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.40  E-value=1.4e-10  Score=89.54  Aligned_cols=220  Identities=14%  Similarity=0.142  Sum_probs=141.6

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEEEec---cCCEEEEEecCCCCCCeEEEEECCCccEEeeec------cC-c
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF---RSNIICLVNSGPHQSNKVMIWDDHENRYLGELS------FR-S   96 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~-~   96 (359)
                      |.+.+|+++..+......+...-...+..+.|..   ++. .++.-..  ..|.|.++..........++      .. .
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~--a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~  122 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAH--ARGQIQLYRNDEDESSVHLRGLSSKKISVV  122 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeecc--ccceEEEEeeccceeeeeecccchhhhhhe
Confidence            4578888876544322222101123344444442   223 2222211  46889998755444433333      11 1


Q ss_pred             ceeEEEEecceeEEE---ecCeEEEEEccccee--eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-
Q 018248           97 EVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL--VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-  170 (359)
Q Consensus        97 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-  170 (359)
                      ...++.|++.+.-++   .+|.+.+-+...+..  ++.++.|.-+.+.+.|+.....  ++.+|+.|+.+..|+.+... 
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn--lvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN--LVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc--eEEecCCCceEEEEEecCCcc
Confidence            245667887776555   778888666544433  3477888888888888876665  56669999999999988322 


Q ss_pred             --eEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEecCCC--CEEEEEcCC
Q 018248          171 --SKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFSSNA--QWLAASSDK  244 (359)
Q Consensus       171 --~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d  244 (359)
                        .+..+.|...|.++.-+| .+.++++|+.|.. |++||.+ .++++..-.   -.+.|+.+.++|.-  +.|+++-.+
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHN  276 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhc
Confidence              222456888999998886 5779999999999 9999998 467766554   34799999999853  455555555


Q ss_pred             CcEEEEEccCCC
Q 018248          245 GTVHVFGLKVDS  256 (359)
Q Consensus       245 g~i~iw~~~~~~  256 (359)
                      | .+|-+.+...
T Consensus       277 G-~ki~~~~~~~  287 (339)
T KOG0280|consen  277 G-AKILDSSDKV  287 (339)
T ss_pred             C-ceEEEecccc
Confidence            5 7888877654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=9.1e-10  Score=92.39  Aligned_cols=236  Identities=9%  Similarity=0.103  Sum_probs=151.3

Q ss_pred             CceEEEEEccCCCEEEEec-C-----------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCC
Q 018248            7 ITIHHLALNQDHGCFATGT-E-----------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQ   74 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d-----------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~   74 (359)
                      ..|.-+.|||+.+||++=+ .           ..+.|||+.+|..........+....-....|++++++++-..+    
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----  325 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----  325 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence            4578899999999998853 1           45999999998766333221122233456789999999998873    


Q ss_pred             CCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE--------ecCeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248           75 SNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                       ..|.||+..+-.++..-. ....|....|+|.+++++        .-.++.+..+.+++.+++-..+.  +..+.+.+.
T Consensus       326 -~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQ  402 (698)
T KOG2314|consen  326 -NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQ  402 (698)
T ss_pred             -ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEec
Confidence             789999977654443333 446789999999999998        23467778887777766654432  334444444


Q ss_pred             CCccEEEecC---------CCCeeEEEEecCCeee-EEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCC-C
Q 018248          146 AGPMVMACPG---------LLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMD-G  211 (359)
Q Consensus       146 ~~~~~l~~~g---------~~d~~v~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~-~  211 (359)
                      .++-+|+.--         +.-..+.|...+.+.+ .....-...|...+|-|.|..+++-+.   ..+ +.+|.+++ .
T Consensus       403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~t-vsfY~~e~~~  481 (698)
T KOG2314|consen  403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNT-VSFYAVETNI  481 (698)
T ss_pred             cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccc-eeEEEeecCC
Confidence            4444454310         0011122222221111 111123557788899999997766543   235 88998773 2


Q ss_pred             ---cEEEEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEEEEEccC
Q 018248          212 ---SLLQEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVHVFGLKV  254 (359)
Q Consensus       212 ---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~  254 (359)
                         +++..+.    ....+.+.|+|.|++++.+.   ..|.+.++|+..
T Consensus       482 ~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  482 KKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             Cchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence               2333343    35678999999999988764   568899999885

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.2e-11  Score=101.76  Aligned_cols=257  Identities=14%  Similarity=0.125  Sum_probs=168.8

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecce--eEEE---ecCeEEEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDR--IVVV---LNQKVYVYN  120 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~---~d~~i~i~d  120 (359)
                      +|.+.|..+.+...+..++..+    .|..|.+||...++....+.  |...|....|-|..  +.++   .||.+++=.
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgS----DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGS----DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             CCCCccceeeecccCceeeccC----ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            7899999888877777666555    68999999999998888886  77888777787742  3333   899999877


Q ss_pred             c-cccee--eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeee---EEeecccc---cccEEEEccCC
Q 018248          121 F-TDLKL--VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKS---KYITAHAS---RIASIAMTLDG  190 (359)
Q Consensus       121 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~---~~~~~~~~---~i~~~~~s~~~  190 (359)
                      + .++..  ...+..|.+++..+++-|+....++.+  +.|+.+.- +.....+.   ..-..+..   ....++..|-.
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            7 33333  345567888999999999887765544  46777765 33333222   22223333   56788888866


Q ss_pred             c-EEEEEeCCCCeEEEEEcCCCcE------EEEeecC----CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248          191 R-FVATASSKGTLIRVFNTMDGSL------LQEMRRG----AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP  259 (359)
Q Consensus       191 ~-~l~~~~~dg~~i~iwd~~~~~~------~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  259 (359)
                      . .+++++.|.. +++||.+.-..      +..+..+    .....|++++|+.++.-|.++-.|-.|++|.-..+....
T Consensus       294 t~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  294 TNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             ccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            5 8899999998 99999875322      2222211    234579999999887766667777789999443332110


Q ss_pred             CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee-ecccCCEEEEEecCCeEEEEEeCC
Q 018248          260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG-FGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                         ..                 .......+.++.++.++.-       ..|..+- |.|...++++|++-|.|++|+-..
T Consensus       373 ---p~-----------------~~s~~~~~~k~vYKGHrN~-------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  373 ---PD-----------------PSSPREQYVKRVYKGHRNS-------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             ---CC-----------------CCcchhhccchhhcccccc-------cccceeeeccCccceEEecCccceEEEEecch
Confidence               00                 0000011222223333221       2344454 578889999999999999996543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.37  E-value=7.9e-10  Score=91.77  Aligned_cols=234  Identities=12%  Similarity=0.122  Sum_probs=159.6

Q ss_pred             EEEEccCCCEEEEecCCceEEEEcC-CCcceeeeecccCCCCceeEEEEeccCCE--EEEEec-CCCCCCeEEEEECCCc
Q 018248           11 HLALNQDHGCFATGTETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNI--ICLVNS-GPHQSNKVMIWDDHEN   86 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~-~~~~d~~i~iwd~~~~   86 (359)
                      -+.|+.+.+++|--....+.|+++. ...+.....++   ...+...+++|.++.  +++... -...+..+++|.+..+
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~  212 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN  212 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEecCCccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence            5677777777765556778899852 22222222332   345555666665433  222221 1116789999999988


Q ss_pred             cEEeeec-cCcceeEEEEecceeEEE--------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           87 RYLGELS-FRSEVKNVRLRRDRIVVV--------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        87 ~~~~~~~-~~~~v~~~~~~~~~~~~~--------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      ..+.+.. ....=..+.|++.|.+++              ....+++++++.. .+.......++|...+|.|.++.+.+
T Consensus       213 s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~v  291 (561)
T COG5354         213 SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAV  291 (561)
T ss_pred             CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeE
Confidence            8777766 555556788999888776              2467888988533 23332245778899999999998777


Q ss_pred             EecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEE-EeecCCCCcceE
Q 018248          152 ACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQ-EMRRGAERAEIY  227 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~-~~~~~~~~~~i~  227 (359)
                      ++ |...-.+.+++.+++....+  ....-+.+.|+|.+++++.++-|   |. |.+||........ .+.+    ....
T Consensus       292 i~-g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s  363 (561)
T COG5354         292 IS-GYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTS  363 (561)
T ss_pred             Ee-cccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCce
Confidence            76 77888888888888744443  34555778899999999987754   56 9999976655444 5543    2445


Q ss_pred             EEEecCCCCEEEEEc------CCCcEEEEEccCCC
Q 018248          228 SLAFSSNAQWLAASS------DKGTVHVFGLKVDS  256 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~------~dg~i~iw~~~~~~  256 (359)
                      -+.|+||++++.+..      .|..+.|||+....
T Consensus       364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             EeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            678999999987764      46789999998765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.36  E-value=2.9e-09  Score=99.91  Aligned_cols=242  Identities=14%  Similarity=0.129  Sum_probs=148.7

Q ss_pred             CceEEEEEccCCCEEEEec--CC---ceEEEEcCCCc-ceeeeecc----cCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248            7 ITIHHLALNQDHGCFATGT--ET---GFRVYLSDPYK-PIMRRDFD----RNPRGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~--d~---~i~iw~~~~~~-~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      ..+...+|.+....+.++.  ..   .|.+-...... ......+.    ......+..+.+..+.+.++++.    .+|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~----~~G   97 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIAL----ASG   97 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEE----CCc
Confidence            4677788887665553333  22   23343333222 11122221    01235566677777777777777    568


Q ss_pred             eEEEE----ECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEccc------------------------ce
Q 018248           77 KVMIW----DDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD------------------------LK  125 (359)
Q Consensus        77 ~i~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~------------------------~~  125 (359)
                      .|.+.    +..+......-..+..|.+++||||+.+++   .++++.+.+- +                        |+
T Consensus        98 di~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGk  176 (928)
T PF04762_consen   98 DIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGK  176 (928)
T ss_pred             eEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCc
Confidence            99988    544443332223678899999999998888   5667666542 1                        11


Q ss_pred             eeeeEeccC----------------------CCceeeeeecCCCccEEEecCC--C---CeeEEEEecCCeeeEEeeccc
Q 018248          126 LVDQIETVV----------------------NPTGLCDVSQNAGPMVMACPGL--L---KGQVRVEDYGTKKSKYITAHA  178 (359)
Q Consensus       126 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~g~--~---d~~v~~~~~~~~~~~~~~~~~  178 (359)
                      ...+|.+..                      ..-..+.+++.|++.++|++.-  .   ...++||++++.....-..-.
T Consensus       177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~  256 (928)
T PF04762_consen  177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVD  256 (928)
T ss_pred             ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCC
Confidence            112221100                      0012345556566656665322  1   367888999976554444444


Q ss_pred             ccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecC--CCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          179 SRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRG--AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      +--.+++|.|.|++||+...   ... |.+|. ++|-.-.+|...  .....|..+.|++|+..||..-.|. |.+|-..
T Consensus       257 gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~  333 (928)
T PF04762_consen  257 GLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS  333 (928)
T ss_pred             CccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence            55568899999999998865   233 77777 566655555442  2456899999999999999987665 9999988


Q ss_pred             CCC
Q 018248          254 VDS  256 (359)
Q Consensus       254 ~~~  256 (359)
                      +-.
T Consensus       334 NYH  336 (928)
T PF04762_consen  334 NYH  336 (928)
T ss_pred             CCE
Confidence            754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.36  E-value=1.3e-09  Score=92.16  Aligned_cols=182  Identities=14%  Similarity=0.225  Sum_probs=134.6

Q ss_pred             CEEEEEecCCCCCCeEEEEECCCccEEeeec----cCcceeEEEEe------c--------------ceeEEE---ecCe
Q 018248           63 NIICLVNSGPHQSNKVMIWDDHENRYLGELS----FRSEVKNVRLR------R--------------DRIVVV---LNQK  115 (359)
Q Consensus        63 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~------~--------------~~~~~~---~d~~  115 (359)
                      .++++..    .||.+++|+..+++..+.+.    ..+...+..|.      |              +...++   ..|.
T Consensus         6 ~~~A~~~----~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    6 DYFALST----GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             heEeecC----CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            4566666    68999999999998888875    33445555553      1              122233   6789


Q ss_pred             EEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcE
Q 018248          116 VYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRF  192 (359)
Q Consensus       116 i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~  192 (359)
                      |.+|+...++.-..+.+  |.+.+.++.++.+-.  .+- +++.|+.+..|.... ..++.....+..+.+++.+|||..
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~--ciy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~  158 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG--CIY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI  158 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccC--ceE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE
Confidence            99999999998888864  555565554443332  233 355788888877765 556667778888999999999999


Q ss_pred             EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-----CCEEEE-EcCCCcEEEEEccCCC
Q 018248          193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-----AQWLAA-SSDKGTVHVFGLKVDS  256 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~-~~~dg~i~iw~~~~~~  256 (359)
                      |++++..   |++||+++++.+..|.+  |.++|.++.|..+     |.++.+ ...+..+.+|-+....
T Consensus       159 l~~as~~---ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  159 LLTASRQ---IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             EEeccce---EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence            9998765   99999999999999998  8899999999876     666554 4455668899887744

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3.8e-09  Score=91.16  Aligned_cols=196  Identities=9%  Similarity=0.078  Sum_probs=125.9

Q ss_pred             CceeEEEEeccCCE-EEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEccc
Q 018248           51 GGTQLVSMLFRSNI-ICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTD  123 (359)
Q Consensus        51 ~~v~~~~~~~~~~~-~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~  123 (359)
                      +......|+|+++. +++.+... .+..|.++|+.+++.......++......|+|||..++      .+..|+++|+.+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            35566789999985 55555432 24789999998887666555666667788999997666      346799999877


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC----
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK----  199 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----  199 (359)
                      ++. ..+...........|+|+++.+++.+.......|++.+..+...+.+......  ...|+|||++|+..+..    
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcc
Confidence            653 33433333234568999999866665322223566666665555444322212  24899999988776643    


Q ss_pred             -----CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-C--cEEEEEccCC
Q 018248          200 -----GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-G--TVHVFGLKVD  255 (359)
Q Consensus       200 -----g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~~  255 (359)
                           .. |.+.|+.+++.. .+...   .......|+|||+.|+..+.+ +  .+.+.+++..
T Consensus       344 ~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        344 FGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             cCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence                 24 888898887654 34322   123358899999988766543 3  3556666543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.34  E-value=3.1e-09  Score=87.70  Aligned_cols=184  Identities=14%  Similarity=0.214  Sum_probs=131.6

Q ss_pred             eccCCEEEEEecCCCCCCeEEEEECCCccEEeeecc----------Cccee---EEE-Eec-ceeEEE--ecCeEEEEEc
Q 018248           59 LFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSF----------RSEVK---NVR-LRR-DRIVVV--LNQKVYVYNF  121 (359)
Q Consensus        59 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~v~---~~~-~~~-~~~~~~--~d~~i~i~d~  121 (359)
                      ..++..+++..     -|.|.+||..+.+.. .+..          ...+.   -+. |++ +|.+++  ..|...+.+.
T Consensus       275 nsDGkrIvFq~-----~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~  348 (668)
T COG4946         275 NSDGKRIVFQN-----AGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP  348 (668)
T ss_pred             CCCCcEEEEec-----CCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence            34566666654     388999997765322 2210          00011   111 222 455555  8888888887


Q ss_pred             ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe-eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248          122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG-QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~-~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  200 (359)
                      ..+-.++.  ++...+....+..+++..++   |..|| .+-+++..+...+.+...-+.|.++..+|+|++++.+....
T Consensus       349 ~~~~~iqv--~~~~~VrY~r~~~~~e~~vi---gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~  423 (668)
T COG4946         349 WDGYSIQV--GKKGGVRYRRIQVDPEGDVI---GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF  423 (668)
T ss_pred             CCCeeEEc--CCCCceEEEEEccCCcceEE---eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence            55544433  34555777778778776333   44677 78889999999999998899999999999999999999888


Q ss_pred             CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC----cEEEEEccCCC
Q 018248          201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG----TVHVFGLKVDS  256 (359)
Q Consensus       201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~  256 (359)
                      . |.+.|+.++.....-+.  ..+-|+.++|||+++++|-+--+|    .|+++|+..++
T Consensus       424 e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         424 E-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             E-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            8 99999999986544333  457899999999999999887665    58999999876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=1.5e-08  Score=97.10  Aligned_cols=240  Identities=13%  Similarity=0.117  Sum_probs=149.2

Q ss_pred             EEEEEccC-CCEEEEec-CCceEEEEcCCCcceeeeecc-c---------CCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248           10 HHLALNQD-HGCFATGT-ETGFRVYLSDPYKPIMRRDFD-R---------NPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus        10 ~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-~---------~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      ..++++++ ++++++-. ++.|++||.+........... .         ++-.....+++.++++.+.++..   ..+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt---~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT---ENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC---CCce
Confidence            46788875 55555555 788999998743211111100 0         00112355666666666555543   3478


Q ss_pred             EEEEECCCccEEeeecc------------------CcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEecc--
Q 018248           78 VMIWDDHENRYLGELSF------------------RSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETV--  133 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~--  133 (359)
                      |+++|..++.. ..+..                  -.....++++| ++.+++   .++.|++||..++... .+.+.  
T Consensus       648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~  725 (1057)
T PLN02919        648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY  725 (1057)
T ss_pred             EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence            99999776543 22210                  11346789999 454444   6789999998766432 22111  


Q ss_pred             -------------CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec----------------------cc
Q 018248          134 -------------VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA----------------------HA  178 (359)
Q Consensus       134 -------------~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~----------------------~~  178 (359)
                                   ......++++|+++.++++-  ..++.|++|+........+.+                      .-
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                         01223478889887766554  457889998765432221110                      01


Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-----------CCcceEEEEecCCCCEEEEEcCCCcE
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-----------ERAEIYSLAFSSNAQWLAASSDKGTV  247 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~i  247 (359)
                      .....++++++|+++++-+.++. |++||..++........+.           .-.....++++++|+++++-+.++.|
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            13468999999998888888888 9999988776553322110           11256789999999999988899999


Q ss_pred             EEEEccCCCC
Q 018248          248 HVFGLKVDSG  257 (359)
Q Consensus       248 ~iw~~~~~~~  257 (359)
                      ++||+++++.
T Consensus       883 rvid~~~~~~  892 (1057)
T PLN02919        883 RYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCcc
Confidence            9999988754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=6e-10  Score=88.03  Aligned_cols=196  Identities=10%  Similarity=0.161  Sum_probs=134.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCC-Cc-ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDP-YK-PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      -+.++++++++++.+.|.+|- .|++.-+.+.. .+ ....+.. ..|...+..+-++..+..++..+    .|..+.--
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~e~V~s~~----~dk~~~~h  141 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTHEWVLSTG----KDKQFAWH  141 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCceeEEEec----cccceEEE
Confidence            467899999999999999999 88888887652 11 1222222 26888888887777777766665    45555444


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEc--ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNF--TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      -.+.+..+..+.......++.+.-.-.++- ..|.|....+  .....+.++.+|...+.+++|.+...  ++.+ |..|
T Consensus       142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--~LfS-g~~d  218 (404)
T KOG1409|consen  142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR--LLFS-GASD  218 (404)
T ss_pred             eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc--EEEe-cccc
Confidence            455555554444332233333322211111 4455555444  45567888889998888888777654  3555 8889


Q ss_pred             eeEEEEecCCee--eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248          159 GQVRVEDYGTKK--SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       159 ~~v~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~  209 (359)
                      ..+.+|+..+..  ...+.+|...|..+..-+--+.|.+++.||. |.+|++.
T Consensus       219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn  270 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN  270 (404)
T ss_pred             CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence            999999988744  4556789999999998888899999999999 9999983

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=5.1e-11  Score=112.26  Aligned_cols=184  Identities=11%  Similarity=0.088  Sum_probs=134.8

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccce
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK  125 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~  125 (359)
                      ..+..+.-+|...+.+..+    .||.+++|....++.+..++  .+..|+.+.|+.+|+...   .||.+.+|.+. .+
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs----~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGS----QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             CceeeecCCCCCceEEecC----CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence            4444444444444444333    68999999999998888887  457888999999887665   89999999985 55


Q ss_pred             eeeeEeccCCCceeeeeecCCCccEEEecC--CCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCC
Q 018248          126 LVDQIETVVNPTGLCDVSQNAGPMVMACPG--LLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGT  201 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  201 (359)
                      +....+.|........|--  ..  +++.|  +.++.+.+|+.......  .-+.|.+.++++++-|..++|++|+.+|.
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s~--~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SL--LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             ceeccccCCccccceeeee--hh--hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence            5555565655444444433  22  33333  45678888886543221  12789999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                       |++||++..+.++.++.           +. ...++++++..|.++||++....
T Consensus      2360 -v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2360 -VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             -EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccc
Confidence             99999998888777653           33 46689999999999999998865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.25  E-value=3.2e-08  Score=81.90  Aligned_cols=170  Identities=14%  Similarity=0.063  Sum_probs=124.1

Q ss_pred             CCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC-eEEEEECCCccEEeeeccC
Q 018248           17 DHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN-KVMIWDDHENRYLGELSFR   95 (359)
Q Consensus        17 ~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~   95 (359)
                      +|.+++..+.|...|.+...+-.   ..+  +|.+.|....+.-+++..++..    .|| .+-|+|..+++.....+.-
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~---iqv--~~~~~VrY~r~~~~~e~~vigt----~dgD~l~iyd~~~~e~kr~e~~l  401 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYS---IQV--GKKGGVRYRRIQVDPEGDVIGT----NDGDKLGIYDKDGGEVKRIEKDL  401 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCee---EEc--CCCCceEEEEEccCCcceEEec----cCCceEEEEecCCceEEEeeCCc
Confidence            68888888888888777654322   223  6788899999988888777766    567 8999998888766666677


Q ss_pred             cceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec---CCCCeeEEEEecCCe
Q 018248           96 SEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP---GLLKGQVRVEDYGTK  169 (359)
Q Consensus        96 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~d~~v~~~~~~~~  169 (359)
                      +.|.++..+++|+.++   ....|.++|+.+++....=+...+-+....|+|++..  +|.+   |-....|++++..+.
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~--iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW--IAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee--EEEecCcceeeeeEEEEecCCC
Confidence            8899999999998766   4557777788888654443444555666777777765  5552   223356788888887


Q ss_pred             eeEEeecccccccEEEEccCCcEEEEEe
Q 018248          170 KSKYITAHASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       170 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~  197 (359)
                      .+...+...+.=.+-+|.||+++|.--+
T Consensus       480 Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         480 KIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eEEEecCCcccccCcccCCCCcEEEEEe
Confidence            7777766666667889999999876554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.24  E-value=6.7e-08  Score=92.68  Aligned_cols=246  Identities=10%  Similarity=0.093  Sum_probs=145.6

Q ss_pred             EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeecc--C-------------cceeEEEEecceeEE--E--ecCeE
Q 018248           56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSF--R-------------SEVKNVRLRRDRIVV--V--LNQKV  116 (359)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~-------------~~v~~~~~~~~~~~~--~--~d~~i  116 (359)
                      +++....+.++++..   .++.|.++|.. ++.+..+..  .             .....+++++++..+  +  .++.|
T Consensus       573 vavd~~~g~lyVaDs---~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        573 LAIDLLNNRLFISDS---NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             EEEECCCCeEEEEEC---CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            455444444444433   45899999964 544443321  0             135788998876533  3  45789


Q ss_pred             EEEEcccceeeeeEecc-----------------CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc--
Q 018248          117 YVYNFTDLKLVDQIETV-----------------VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH--  177 (359)
Q Consensus       117 ~i~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~--  177 (359)
                      +++|+.++. +.++.+.                 -.....+++++++..++++.  ..++.|++|+.....+..+.+.  
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~v~~~~G~G~  725 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGVTRVFSGDGY  725 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCeEEEEecCCc
Confidence            999986654 3333210                 01123578888666555543  3577888877765544433211  


Q ss_pred             -------------cccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEEEEeec-----------CCC--------Cc
Q 018248          178 -------------ASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLLQEMRR-----------GAE--------RA  224 (359)
Q Consensus       178 -------------~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~~~~~~-----------~~~--------~~  224 (359)
                                   -.....++++|+++.|+++ +.++. |++||+.++.......+           +..        -.
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence                         1235679999999855554 45567 99999987653211100           000        11


Q ss_pred             ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      ....++++++|+++++-..++.|++||..++.....      ..   .+..+..                +...    ..
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti------aG---~G~~G~~----------------dG~~----~~  855 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL------AG---TGKAGFK----------------DGKA----LK  855 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE------ec---cCCcCCC----------------CCcc----cc
Confidence            346899999999888888999999999987652100      00   0000000                0000    00


Q ss_pred             ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ..-.....++++++|+.+++-+.++.|++|++..
T Consensus       856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        856 AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             cccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            0012346899999999888888899999999876

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.23  E-value=5.1e-07  Score=72.91  Aligned_cols=221  Identities=16%  Similarity=0.103  Sum_probs=138.1

Q ss_pred             EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEe-cceeEEE-ecCeEEEEEcccceeeeeEec-
Q 018248           56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLR-RDRIVVV-LNQKVYVYNFTDLKLVDQIET-  132 (359)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-  132 (359)
                      ..|.+..+.+.++..   ..+.|..|+..+++... +.... ...+.+. +++.+++ ..+.+.++|..+++....... 
T Consensus         5 p~~d~~~g~l~~~D~---~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDI---PGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEETTTTEEEEEET---TTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEE
T ss_pred             eEEECCCCEEEEEEc---CCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeecc
Confidence            345554556666554   35899999987765433 34333 6777777 7887777 777888889988765544443 


Q ss_pred             ----cCCCceeeeeecCCCccEEEecCCCC------eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEE-eCCCC
Q 018248          133 ----VVNPTGLCDVSQNAGPMVMACPGLLK------GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA-SSKGT  201 (359)
Q Consensus       133 ----~~~~~~~~~~~~~~~~~~l~~~g~~d------~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~  201 (359)
                          .....+.+++.+++. +++...+...      |.+...+..++ ...+...-...+.++|+|+++.|+.+ +..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCCe-EEEEecCcccccceEECCcchheeecccccce
Confidence                223345677777766 4443322211      56776666643 44444445667899999999977655 45566


Q ss_pred             eEEEEEcCCCcE----EEEe-ecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248          202 LIRVFNTMDGSL----LQEM-RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKN  276 (359)
Q Consensus       202 ~i~iwd~~~~~~----~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
                       |..|++.....    ...+ ......+..-.+++..+|++.++....+.|.+++.+ ++.                   
T Consensus       158 -i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~-------------------  216 (246)
T PF08450_consen  158 -IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL-------------------  216 (246)
T ss_dssp             -EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-------------------
T ss_pred             -eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-------------------
Confidence             88888853221    1222 111122357889999999988887788889999977 441                   


Q ss_pred             CCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee-cccCCEEEEEec
Q 018248          277 SSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF-GRQNNTIVIVGL  327 (359)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~  327 (359)
                                             ...+.+|...++.++| .++.+.|++.++
T Consensus       217 -----------------------~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  217 -----------------------LREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -----------------------EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             -----------------------EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence                                   1124556557889999 467788877654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.23  E-value=8.3e-08  Score=82.78  Aligned_cols=218  Identities=15%  Similarity=0.132  Sum_probs=132.1

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS   96 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~   96 (359)
                      +..+.+++ ++.+..+|..+++......+.    ..+.. ....+++.+++.+    .++.+..+|..+|+.+.......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~----~~~~~-~p~v~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLD----ERLSG-GVGADGGLVFVGT----EKGEVIALDAEDGKELWRAKLSS  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCC----CCccc-ceEEcCCEEEEEc----CCCEEEEEECCCCcEeeeeccCc
Confidence            55666676 899999999999888777764    22111 1122345555544    57999999999999988776544


Q ss_pred             ceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCce-----eeeeecCCCccEEEecCCCCeeEEEEe-cCC
Q 018248           97 EVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTG-----LCDVSQNAGPMVMACPGLLKGQVRVED-YGT  168 (359)
Q Consensus        97 ~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~g~~d~~v~~~~-~~~  168 (359)
                      .+.+.-...++.+++  .++.++.+|.++++.+..++.......     ...+  .++.  +.. +..++.+...+ .++
T Consensus       136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~--v~~-~~~~g~v~ald~~tG  210 (377)
T TIGR03300       136 EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGG--VLV-GFAGGKLVALDLQTG  210 (377)
T ss_pred             eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCE--EEE-ECCCCEEEEEEccCC
Confidence            443322223455555  789999999999998877754332111     1111  1222  222 44567776644 445


Q ss_pred             eeeEEeeccc----cc---ccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          169 KKSKYITAHA----SR---IASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       169 ~~~~~~~~~~----~~---i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      +.+-......    ..   ...+.-+|  .+..+++++.+|. +..||..+|+.+......    ......  .++..++
T Consensus       211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vy  283 (377)
T TIGR03300       211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLY  283 (377)
T ss_pred             CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEEE
Confidence            4433221100    00   00011111  3456777888998 999999999887666521    112222  2466777


Q ss_pred             EEcCCCcEEEEEccCCC
Q 018248          240 ASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       240 ~~~~dg~i~iw~~~~~~  256 (359)
                      .++.+|.+..+|..+++
T Consensus       284 v~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       284 VTDADGVVVALDRRSGS  300 (377)
T ss_pred             EECCCCeEEEEECCCCc
Confidence            88899999999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.23  E-value=3.6e-08  Score=85.00  Aligned_cols=219  Identities=14%  Similarity=0.104  Sum_probs=129.4

Q ss_pred             CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC
Q 018248           17 DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR   95 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~   95 (359)
                      ++..+++++ ++.+..+|.++++......+.    +.+..... ..++.+++..    .++.+..+|.++|+.+.+++..
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~~~p~-v~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~  174 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS----SEVLSPPL-VANGLVVVRT----NDGRLTALDAATGERLWTYSRV  174 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC----ceeecCCE-EECCEEEEEC----CCCeEEEEEcCCCceeeEEccC
Confidence            456677777 999999999988887766652    22221111 1234455444    5799999999999988877633


Q ss_pred             ccee------EEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCC----Cc---eeeeeec--CCCccEEEecCCCC
Q 018248           96 SEVK------NVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVN----PT---GLCDVSQ--NAGPMVMACPGLLK  158 (359)
Q Consensus        96 ~~v~------~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~----~~---~~~~~~~--~~~~~~l~~~g~~d  158 (359)
                      .+..      +.... ++.+++  .++.+..+|.++++.+........    ..   ....-+|  .++.+++   ++.+
T Consensus       175 ~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~---~~~~  250 (377)
T TIGR03300       175 TPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA---VSYQ  250 (377)
T ss_pred             CCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE---EEcC
Confidence            2221      11222 344444  678999999999987665432110    00   0000011  2333222   2257


Q ss_pred             eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          159 GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       159 ~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      |.++.++.. ++.+-... . .....+.  .++..++.++.+|. +..+|..+++.+...... ......+...  .+..
T Consensus       251 g~l~a~d~~tG~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~  322 (377)
T TIGR03300       251 GRVAALDLRSGRVLWKRD-A-SSYQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGY  322 (377)
T ss_pred             CEEEEEECCCCcEEEeec-c-CCccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--ECCE
Confidence            778776654 33333222 1 1112222  24567778889999 999999999887665321 1111222222  4668


Q ss_pred             EEEEcCCCcEEEEEccCCC
Q 018248          238 LAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~  256 (359)
                      |++++.+|.|+++|..+++
T Consensus       323 l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       323 LVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            8889999999999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.21  E-value=6.1e-10  Score=99.90  Aligned_cols=184  Identities=13%  Similarity=0.134  Sum_probs=141.6

Q ss_pred             CCEEEEEecCCCCCCeEEEEECCCccEEeeeccCccee-----EEEEecceeEEE---ecCeEEEEEcccceeeeeEecc
Q 018248           62 SNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVK-----NVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV  133 (359)
Q Consensus        62 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~  133 (359)
                      ...+++..    .++.+.+||...+.....+.+.....     -+..+++..+++   .-+.|.+|+...-+....+.+|
T Consensus        99 ~k~i~l~~----~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH  174 (967)
T KOG0974|consen   99 NKKIALVT----SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH  174 (967)
T ss_pred             cceEEEEE----cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence            34455555    56899999988887777776544322     223456666666   6789999998643333467889


Q ss_pred             CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       134 ~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                      .+.+..+.++-++..  +++ .++|.++++|..+....-  ...+|...+..+.|.|+  .+++++.|.+ .++|+. ++
T Consensus       175 eG~iF~i~~s~dg~~--i~s-~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~  247 (967)
T KOG0974|consen  175 EGSIFSIVTSLDGRY--IAS-VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NG  247 (967)
T ss_pred             CCceEEEEEccCCcE--EEE-EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-cc
Confidence            998888888888875  555 568999999998864432  45689999999999998  8999999999 999974 56


Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      +.+..+..+ ....|..++..++...++|++.|+.+++|++.....
T Consensus       248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence            666677764 346899999999999999999999999999977553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=1e-09  Score=85.65  Aligned_cols=293  Identities=12%  Similarity=0.147  Sum_probs=161.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc---ceeeeecccCCC------------CceeEEEEeccC--CEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK---PIMRRDFDRNPR------------GGTQLVSMLFRS--NII   65 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~---~~~~~~~~~~h~------------~~v~~~~~~~~~--~~~   65 (359)
                      ...+.|+++.|...|.+|++|. .|.|.+|.-+...   ..+...|+ +|.            ..+..+.|.-+.  +..
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            3567899999999999999999 7889999876433   22223333 443            335556665433  334


Q ss_pred             EEEecCCCCCCeEEEEECCCccEE--eeeccCcceeEE----EEecceeEEE----ecCeEEEEEcccceeeeeEeccCC
Q 018248           66 CLVNSGPHQSNKVMIWDDHENRYL--GELSFRSEVKNV----RLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVN  135 (359)
Q Consensus        66 ~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~----~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~  135 (359)
                      ++++    .|.+|++|.+......  .+-.....+...    ..++....+-    .|..|....    ..+. -..|.-
T Consensus       103 Llst----NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p----~rvy-aNaH~y  173 (460)
T COG5170         103 LLST----NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP----CRVY-ANAHPY  173 (460)
T ss_pred             EEec----CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc----ceec-ccccee
Confidence            4455    6899999997654221  111111111100    0011111110    111221111    1100 023444


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCC--e--eeEEeecc-----cccccEEEEccCC-cEEEEEeCCCCeEEE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--K--KSKYITAH-----ASRIASIAMTLDG-RFVATASSKGTLIRV  205 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~--~~~~~~~~-----~~~i~~~~~s~~~-~~l~~~~~dg~~i~i  205 (359)
                      .+..+.+..+.+.  +.++  .|=.|.+|....  .  .+..++.|     ..-|++..|+|.. ..+...+..|. |++
T Consensus       174 hiNSiS~NsD~et--~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl  248 (460)
T COG5170         174 HINSISFNSDKET--LLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKL  248 (460)
T ss_pred             EeeeeeecCchhe--eeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEe
Confidence            4555666655543  5542  466677787763  1  22333444     3468899999964 46777888999 999


Q ss_pred             EEcCCCcE------EEEee--cCC------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCC
Q 018248          206 FNTMDGSL------LQEMR--RGA------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPN  271 (359)
Q Consensus       206 wd~~~~~~------~~~~~--~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  271 (359)
                      -|++....      +....  +-.      -...|..+.|+++|+++++-+. -+|+|||++..+..-.....++.    
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~----  323 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD----  323 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH----
Confidence            99984321      11111  000      1246888999999999987654 57999999886632110000000    


Q ss_pred             ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                    +..-+....+....|..        ..+.||.|.+.+++|+.....-+|..+.
T Consensus       324 --------------l~~~l~d~YEnDaifdk--------FeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         324 --------------LMDELNDVYENDAIFDK--------FEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             --------------HHHHHHhhhhccceeee--------EEEEecCCcccccccccccceeeecccc
Confidence                          00001111222222222        3478899999999999988888887544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=1.9e-08  Score=85.21  Aligned_cols=186  Identities=14%  Similarity=0.153  Sum_probs=132.7

Q ss_pred             ccCCCEEEEec-CCceEEEEcCCCcceeeeeccc-CC-CCceeEEEEe----c--------------cCCEEEEEecCCC
Q 018248           15 NQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDR-NP-RGGTQLVSML----F--------------RSNIICLVNSGPH   73 (359)
Q Consensus        15 s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~-~h-~~~v~~~~~~----~--------------~~~~~~~~~~~~~   73 (359)
                      .|-+.++|... ||.+++|+...++..  +.|.+ .| ++...+..|.    .              ..+..+++-+.  
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~--~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt--   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQ--QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT--   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceee--eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec--
Confidence            35567888888 999999999876544  22210 11 1222222221    1              11222222222  


Q ss_pred             CCCeEEEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248           74 QSNKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      ..|.|.+|++..|+.-..+.   |.+.|.++.++.+-..+.   .|+.+..|+....+.+..+......+..++++|++.
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            46999999999999888876   889999999888766655   899999999999999999988888888999999976


Q ss_pred             ccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccC-----CcEEEEEe-CCCCeEEEEEcCC
Q 018248          148 PMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLD-----GRFVATAS-SKGTLIRVFNTMD  210 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~-~dg~~i~iwd~~~  210 (359)
                      .  +++   ..+.|++|+.. .+.+..|++|.++|+++.|--+     |.++.++. .+.. |.+|-+..
T Consensus       158 ~--l~~---as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~  221 (541)
T KOG4547|consen  158 I--LLT---ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK  221 (541)
T ss_pred             E--EEe---ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence            5  444   25689996665 5778889999999999999876     66665544 3444 78886654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=2.8e-10  Score=95.60  Aligned_cols=205  Identities=14%  Similarity=0.183  Sum_probs=144.5

Q ss_pred             eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC-------ccEEeeec-cCcceeEEEEecceeEEE-ec
Q 018248           43 RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE-------NRYLGELS-FRSEVKNVRLRRDRIVVV-LN  113 (359)
Q Consensus        43 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d  113 (359)
                      ..+. ||...+..+.-..+.+..+.++    .|.+|++|.++.       ..+..+++ |..+|.++.|-.+.+.++ .|
T Consensus       729 ~nf~-GH~~~iRai~AidNENSFiSAS----kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD  803 (1034)
T KOG4190|consen  729 CNFT-GHQEKIRAIAAIDNENSFISAS----KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD  803 (1034)
T ss_pred             eccc-CcHHHhHHHHhcccccceeecc----CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc
Confidence            3444 8888888877666777777666    799999999763       23555666 999999999999999998 99


Q ss_pred             CeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEe-----ecccccccEEE
Q 018248          114 QKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYI-----TAHASRIASIA  185 (359)
Q Consensus       114 ~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~-----~~~~~~i~~~~  185 (359)
                      +.|.+||.--++++..+..  ..+.+..+..-++-+..++...++...+|++.+.+. .-...+     .+....+.+++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            9999999877776654432  222333444445433333444356788899855443 322222     34456789999


Q ss_pred             EccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEE-EEccCCC
Q 018248          186 MTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV-FGLKVDS  256 (359)
Q Consensus       186 ~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-w~~~~~~  256 (359)
                      ..+.|+.++.+-..|. |.+.|.++|+.+...+.  -......++ .|..+.|+....|.++.| |..-.+.
T Consensus       884 Va~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             eccCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            9999999999999999 99999999998887764  223333333 256677887778888888 8766553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.11  E-value=2.5e-09  Score=86.25  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=106.6

Q ss_pred             EEEEecceeEEE---ecCeEEEEEcccc----eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE
Q 018248          100 NVRLRRDRIVVV---LNQKVYVYNFTDL----KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK  172 (359)
Q Consensus       100 ~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~  172 (359)
                      .+..++.+++++   .+....+++....    +.+........ ...+.+..+.....++-..+....+.+|.....+..
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~-~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR-PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC-cceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence            344556666666   4445445554322    22222222222 233444444444444443334455555655545566


Q ss_pred             EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          173 YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       173 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      .+-+|-.-+..++|+||+++|+++..|.. |++-.......+..+..+ |...|..++.-++ +.|++++.|++|++||+
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence            67899999999999999999999999999 999888777777777655 7789999998754 56899999999999999


Q ss_pred             cCCCCCC
Q 018248          253 KVDSGSP  259 (359)
Q Consensus       253 ~~~~~~~  259 (359)
                      .+++...
T Consensus       223 ~sgk~L~  229 (390)
T KOG3914|consen  223 TSGKLLD  229 (390)
T ss_pred             ccCCccc
Confidence            9998664

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=2e-08  Score=77.90  Aligned_cols=176  Identities=11%  Similarity=0.115  Sum_probs=117.2

Q ss_pred             CCeEEEEECCCccEEe--eec--cCcceeEEEEec---cee-EEE---ecCeEEEEEcccceeeeeEeccC------CCc
Q 018248           75 SNKVMIWDDHENRYLG--ELS--FRSEVKNVRLRR---DRI-VVV---LNQKVYVYNFTDLKLVDQIETVV------NPT  137 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~--~~~--~~~~v~~~~~~~---~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~------~~~  137 (359)
                      -|++.+|++...+.+.  +++  ....+..+.|.-   ++. .++   ..|.|.+|..........+.+-.      ...
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            3778888877665444  222  344566666653   333 222   78889888874443333333211      112


Q ss_pred             eeeeeecCCCccEEEecCCCCeeEEE-EecCC--eeeEEeecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcC-CCc
Q 018248          138 GLCDVSQNAGPMVMACPGLLKGQVRV-EDYGT--KKSKYITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTM-DGS  212 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~--~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~-~~~  212 (359)
                      -.+.|++.+..  +++ +..+|.+.+ +....  +.++..+.|+-..+...|+.. .+++.+|++|+. +..||++ .++
T Consensus       125 lslD~~~~~~~--i~v-s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~  200 (339)
T KOG0280|consen  125 LSLDISTSGTK--IFV-SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKT  200 (339)
T ss_pred             eEEEeeccCce--EEE-EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcc
Confidence            34567777766  444 445777775 33333  445578999999999999853 458899999999 9999999 344


Q ss_pred             EEEE-eecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCC
Q 018248          213 LLQE-MRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       213 ~~~~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+.. .+.  |...|.++.-+| .+.+|++|+.|..|++||.++-.
T Consensus       201 ~i~~n~kv--H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  201 FIWHNSKV--HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             eeeeccee--eecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            4433 222  678899998885 67899999999999999999644

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.10  E-value=3e-08  Score=76.04  Aligned_cols=228  Identities=11%  Similarity=0.071  Sum_probs=138.0

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCE-EEEEecCCCCCCeEEEEECCCccEEeeec-c
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNI-ICLVNSGPHQSNKVMIWDDHENRYLGELS-F   94 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~   94 (359)
                      ..+||.|+ .|.+.+|...+.+.....--  .|...|..+.-.-+... +.+++    .|.++++.++.-+....... .
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~s----ndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIAS----NDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeec--ccccchhhhhhhcccccceeecc----CCcceeEEEEecCcccceeecc
Confidence            35788887 89999999986554332221  24555544332222233 34444    57888888765543332222 1


Q ss_pred             CcceeEEEEecceeEEE---ecCeEEEEEccc-ceeeeeEe--ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC
Q 018248           95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-LKLVDQIE--TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT  168 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~  168 (359)
                      .-.+.++++++++.+.+   ....|..|.+.. ++.+..+.  .....-.+..|+....  .+|+ +..||.+.||+.+.
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv-~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAV-VFQDGTCAIYDVRN  234 (344)
T ss_pred             ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEE-EecCCcEEEEEecc
Confidence            13478899999999888   567888898843 33333222  2222223455555444  4555 66899999988764


Q ss_pred             ee------eEEeecccccccEEEEccCCc--EEEEEeCCCCeEEEEEcCCCcEEEEeecCC-----C-CcceEEEEecCC
Q 018248          169 KK------SKYITAHASRIASIAMTLDGR--FVATASSKGTLIRVFNTMDGSLLQEMRRGA-----E-RAEIYSLAFSSN  234 (359)
Q Consensus       169 ~~------~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-----~-~~~i~~~~~s~~  234 (359)
                      ..      ..+-..|.+.+..+.|+|.|.  +|...-.-+. +.+.|++++...+.+....     | ...|..-.|+.+
T Consensus       235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~  313 (344)
T KOG4532|consen  235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE  313 (344)
T ss_pred             cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence            21      122346899999999998765  4444444455 9999999987555443211     1 134777778777


Q ss_pred             CCEEEEEcCCCcEEEEEccCCC
Q 018248          235 AQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +..+.+.+++. +.=|++.+..
T Consensus       314 n~s~~v~~e~~-~ae~ni~srs  334 (344)
T KOG4532|consen  314 NESNDVKNELQ-GAEYNILSRS  334 (344)
T ss_pred             Ccccccccchh-hheeeccccc
Confidence            77666655543 5667666654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.09  E-value=7.3e-10  Score=104.81  Aligned_cols=192  Identities=13%  Similarity=0.201  Sum_probs=144.1

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      +-..|.++.=+|...+.++|+ ||.+++|....++.+...... | ...+..+.++..++...++.    .||.+.+|.+
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGnk~~i~d----~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGNKFGIVD----GDGDLSLWQA 2280 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCCceeeec----cCCceeeccc
Confidence            446788888899999999999 999999999877665443332 3 36777778888888887777    6899999996


Q ss_pred             CCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEccc-c--eeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           84 HENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTD-L--KLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      . .++....+ |.....+++|-.....-+    .++.+.+||..- +  ..+.  ..|.+.++++++.|...  ++++ |
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--llis-g 2354 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LLIS-G 2354 (2439)
T ss_pred             C-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EEEe-c
Confidence            6 55666666 888888888876333333    678999999722 1  2233  67888889999998765  3555 8


Q ss_pred             CCCeeEEEEecCCeeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          156 LLKGQVRVEDYGTKKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      +.+|.|++|+.+.+.++ .++.         +. ...++++|+..|. |+||++.....++.++.
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence            89999999998765443 2222         33 5668999999999 99999998888877764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=3.8e-09  Score=83.66  Aligned_cols=228  Identities=12%  Similarity=0.166  Sum_probs=136.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceee-eecccCC-----CCceeEEEEeccCCEEEEEecCCCCCC
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMR-RDFDRNP-----RGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~-~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      +.|+=-|.+++++.|+..++++.|=.|.+|+++-....+. ..++ .|     ..-++...|+|....++..+.   ..|
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSS---SKG  236 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSS---SKG  236 (433)
T ss_pred             ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEec---CCC
Confidence            5688889999999999999999999999999974333221 1221 11     233566677776544444443   469


Q ss_pred             eEEEEECCCccEEe----ee------------c-cCcceeEEEEecceeEEE-ec-CeEEEEEc-ccceeeeeEeccCCC
Q 018248           77 KVMIWDDHENRYLG----EL------------S-FRSEVKNVRLRRDRIVVV-LN-QKVYVYNF-TDLKLVDQIETVVNP  136 (359)
Q Consensus        77 ~i~iwd~~~~~~~~----~~------------~-~~~~v~~~~~~~~~~~~~-~d-~~i~i~d~-~~~~~~~~~~~~~~~  136 (359)
                      +|++.|++...+--    .+            . .-..|.++.|+++|++++ .| -+|++||+ ...+++.+++.|..-
T Consensus       237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~l  316 (433)
T KOG1354|consen  237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYL  316 (433)
T ss_pred             cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhH
Confidence            99999987432110    01            0 124688999999999999 55 79999999 556666666654321


Q ss_pred             -------------ceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee--ccccc--ccEEEEccCCcEEEEEeCC
Q 018248          137 -------------TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT--AHASR--IASIAMTLDGRFVATASSK  199 (359)
Q Consensus       137 -------------~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~--~~~~~--i~~~~~s~~~~~l~~~~~d  199 (359)
                                   ..-...+++|+...+++ |+..+.+++++......+.+.  .....  ...+   ..-+.+.+++..
T Consensus       317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~T-Gsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r  392 (433)
T KOG1354|consen  317 RSKLCSLYENDAIFDKFECSWSGNDSYVMT-GSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKR  392 (433)
T ss_pred             HHHHHHHhhccchhheeEEEEcCCcceEec-ccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCc
Confidence                         11123344555455666 888999999774433333322  22211  1111   111233333333


Q ss_pred             CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          200 GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       200 g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      .. ..++       ...+.   ....+...+|+|..+.+|.+..+. ++||
T Consensus       393 ~~-~~~~-------vd~ld---f~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  393 KR-DEIS-------VDALD---FRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             cc-cccc-------cchhh---hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            22 2222       11121   234677789999999998887654 6665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.08  E-value=4.9e-07  Score=70.44  Aligned_cols=226  Identities=11%  Similarity=0.118  Sum_probs=129.5

Q ss_pred             EEEEccCCCEEEEecCCceEEEEcCCC-cce-eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248           11 HLALNQDHGCFATGTETGFRVYLSDPY-KPI-MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~-~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      .++.++||+.||+-.|..|.|-..... ..+ ............-+-++|++++..++++.    ..|+|+++|+... .
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~----S~G~i~vfdl~g~-~   76 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE----STGTIRVFDLMGS-E   76 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc----CCCeEEEEecccc-e
Confidence            467889999999999999998876532 111 12222211223356789999999999888    5699999997653 3


Q ss_pred             Eeeec--------cCcceeEEEEecce-------eEEE--ecCeEEEEEcc-----cceeeeeEec---cCCCceeeeee
Q 018248           89 LGELS--------FRSEVKNVRLRRDR-------IVVV--LNQKVYVYNFT-----DLKLVDQIET---VVNPTGLCDVS  143 (359)
Q Consensus        89 ~~~~~--------~~~~v~~~~~~~~~-------~~~~--~d~~i~i~d~~-----~~~~~~~~~~---~~~~~~~~~~~  143 (359)
                      +..+.        ....|..+.|.+..       .+++  ..|.++-|-+.     ..+..+.+..   ....+..+.++
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            33332        23566777775432       3344  77777777652     2234444433   34567777777


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEc---cCCcEEEEEeCCCC-----eEEEEEcCCCcEEE
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMT---LDGRFVATASSKGT-----LIRVFNTMDGSLLQ  215 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~-----~i~iwd~~~~~~~~  215 (359)
                      |...-  |..+|.....-...          ++....+++=.+-   |..+. ++...|+.     .-.+|.+-+.+...
T Consensus       157 p~h~L--LlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs  223 (282)
T PF15492_consen  157 PKHRL--LLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS  223 (282)
T ss_pred             CCCCE--EEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee
Confidence            76543  44445544321111          1112222222221   22211 12222221     02344433322221


Q ss_pred             EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..  ......|..|..||||+.||+...+|.|.+|++.+-.
T Consensus       224 ~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  224 RQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             cc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            11  1245689999999999999999999999999998765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.02  E-value=4.3e-07  Score=83.77  Aligned_cols=238  Identities=15%  Similarity=0.113  Sum_probs=143.6

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      -...|.++.|..+...+..+. .|.|.+-|.++.........    ..+|.+++|+++...++++++    .+++.+-. 
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v----d~GI~aaswS~Dee~l~liT~----~~tll~mT-  137 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV----DNGISAASWSPDEELLALITG----RQTLLFMT-  137 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec----cCceEEEeecCCCcEEEEEeC----CcEEEEEe-
Confidence            346899999999999888888 99999998887665555554    689999999999999999994    45665544 


Q ss_pred             CCccEEeeec------cCcceeEEEEecceeEEE-ecCeEEEEEccc-ceeeeeEeccCCCceeeeeecCCCccEEEec-
Q 018248           84 HENRYLGELS------FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVMACP-  154 (359)
Q Consensus        84 ~~~~~~~~~~------~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  154 (359)
                      .+-.++....      ..+..-.+-|-.....+- ..|....-+... .+.......+.+ -..+.|..+++.  +|++ 
T Consensus       138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~--fAVs~  214 (1265)
T KOG1920|consen  138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEY--FAVSF  214 (1265)
T ss_pred             ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC-CceEEEccCCcE--EEEEE
Confidence            3333333222      112233344433222221 222222222110 011111111222 234666666654  4431 


Q ss_pred             ---CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe---CCCCeEEEEEcCCCcEEEEeec--CCCCcce
Q 018248          155 ---GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS---SKGTLIRVFNTMDGSLLQEMRR--GAERAEI  226 (359)
Q Consensus       155 ---g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~~i~iwd~~~~~~~~~~~~--~~~~~~i  226 (359)
                         ......+++|+..+..-..-....+.-.+++|-|.|.++++-.   .|+. |.+|. ++|-.-.+|..  .....++
T Consensus       215 ~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEV  292 (1265)
T ss_pred             EeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccch
Confidence               2222789999988543333233344557899999999998764   4556 88887 45543333221  2234458


Q ss_pred             EEEEecCCCCEEEE---EcCCCcEEEEEccCCC
Q 018248          227 YSLAFSSNAQWLAA---SSDKGTVHVFGLKVDS  256 (359)
Q Consensus       227 ~~~~~s~~~~~l~~---~~~dg~i~iw~~~~~~  256 (359)
                      ..++|+.++..|++   ......|++|-+.+-.
T Consensus       293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             heeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            99999999999987   4444559999988754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.01  E-value=1.5e-06  Score=67.74  Aligned_cols=221  Identities=13%  Similarity=0.089  Sum_probs=128.8

Q ss_pred             EEEecceeEEE--ecCeEEEEEcccc--eeeeeEecc---CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE
Q 018248          101 VRLRRDRIVVV--LNQKVYVYNFTDL--KLVDQIETV---VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY  173 (359)
Q Consensus       101 ~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~  173 (359)
                      ++.+++|++++  .|..|.|=..++.  ..+.+...+   ...-.-++|+||+..  ||+ ....|+|++++..+..+..
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tl--La~-a~S~G~i~vfdl~g~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTL--LAY-AESTGTIRVFDLMGSELFV   79 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcE--EEE-EcCCCeEEEEecccceeEE
Confidence            56678888888  8888877665432  222222222   223356899988865  555 3458999998888766665


Q ss_pred             eecc-------cccccEEEEccCC------cEEEEEeCCCCeEEEEEcCC-----CcEEEEeecCC-CCcceEEEEecCC
Q 018248          174 ITAH-------ASRIASIAMTLDG------RFVATASSKGTLIRVFNTMD-----GSLLQEMRRGA-ERAEIYSLAFSSN  234 (359)
Q Consensus       174 ~~~~-------~~~i~~~~~s~~~------~~l~~~~~dg~~i~iwd~~~-----~~~~~~~~~~~-~~~~i~~~~~s~~  234 (359)
                      +...       ...|..+.|-+..      ..|++-..+|. ++=|-+..     .+....+.... .+..|.++.++|.
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~-L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ-LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccce-eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            5432       2356666665421      24666677777 77776532     23333333221 4678999999999


Q ss_pred             CCEEEEEcCCC-----------cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEE
Q 018248          235 AQWLAASSDKG-----------TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF  303 (359)
Q Consensus       235 ~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (359)
                      .++|+.|+...           -+.-|.+-++.+-...  +.  .... ..  ........+.+....+.+..      .
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~--v~--~~~~-~~--~~~~~~~~~~~~~~~~~fs~------~  225 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ--VT--SSED-DI--TASSKRRGLLRIPSFKFFSR------Q  225 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE--cc--ccCc-cc--cccccccceeeccceeeeec------c
Confidence            99888776321           2666777665532110  00  0000 00  00001111111110011111      1


Q ss_pred             eecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       304 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .-..+.|..+..||||..|++..-+|.|.+|.++.
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence            11236789999999999999999999999999986

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=4.6e-08  Score=85.77  Aligned_cols=242  Identities=14%  Similarity=0.060  Sum_probs=165.2

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC----------CEEEEEecCCC
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS----------NIICLVNSGPH   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~~~~~~~~~~   73 (359)
                      +|.+.-.++.|+|.| +||.|+...|.+.|..+.+.+...+   -|...|..+.|.|-+          ..+.++++.  
T Consensus        13 l~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie---~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD--   86 (1062)
T KOG1912|consen   13 LSRSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIE---LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD--   86 (1062)
T ss_pred             CCcccccccccCccc-eEEEecCceEEEEehhhhhhhhccc---cCccceeEEEeccCCCchhccCccccceeEEecc--
Confidence            345557788999887 8899998889999988766664444   578999999998643          233444444  


Q ss_pred             CCCeEEEEECCCccEEeeec-cCcceeEEEEecc---e-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248           74 QSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRD---R-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~---~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                      ..|.|.+||...+..+..+. +..++.+++|-+.   . .+++   ....+.+|+..+|+.............++.+.|-
T Consensus        87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPf  166 (1062)
T KOG1912|consen   87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPF  166 (1062)
T ss_pred             ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCC
Confidence            46999999999999888888 6788999998663   3 2232   7889999999999998887766666666777775


Q ss_pred             CCccEEEecCCCCeeEEE-EecC-------CeeeEEeecccc-------------------------cccEEEEccCCcE
Q 018248          146 AGPMVMACPGLLKGQVRV-EDYG-------TKKSKYITAHAS-------------------------RIASIAMTLDGRF  192 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~-~~~~-------~~~~~~~~~~~~-------------------------~i~~~~~s~~~~~  192 (359)
                      ....+.+. |+ .|.+.+ .+..       ++..+....|..                         ....++|+|.-+-
T Consensus       167 d~rh~~~l-~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn  244 (1062)
T KOG1912|consen  167 DSRHFCVL-GS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN  244 (1062)
T ss_pred             CcceEEEE-cc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence            44433333 43 555555 3222       122222222211                         0123467887665


Q ss_pred             EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC--CEEEEEcCCCcEEEEEccCCC
Q 018248          193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA--QWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++-...... +.++|++-..++....-  ..+.+.-+.+-|++  ..|++.-.||.+.||-.+...
T Consensus       245 ~lfi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  245 ILFITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             eEEEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            555555666 99999988888877765  33455556666665  478899999999999887643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.00  E-value=1.1e-06  Score=70.70  Aligned_cols=215  Identities=15%  Similarity=0.145  Sum_probs=130.9

Q ss_pred             CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEec
Q 018248           26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRR  105 (359)
Q Consensus        26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  105 (359)
                      ++.|..||..+++......+..+....+  ......++.+++.+    .++.|..||..+|+.+..+..+..+.......
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV--ATAVPDGGRVYVAS----GDGNLYALDAKTGKVLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE--ETEEEETTEEEEEE----TTSEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc--ceEEEeCCEEEEEc----CCCEEEEEECCCCCEEEEeeccccccceeeec
Confidence            5788999998888888777631112211  11223456666665    57999999999999998887554443333334


Q ss_pred             ceeEEE--ecCeEEEEEcccceeeeeE-eccCCC---ceeeeeecCCCccEEEecCCCCeeEEEEe-cCCeeeEEeeccc
Q 018248          106 DRIVVV--LNQKVYVYNFTDLKLVDQI-ETVVNP---TGLCDVSQNAGPMVMACPGLLKGQVRVED-YGTKKSKYITAHA  178 (359)
Q Consensus       106 ~~~~~~--~d~~i~i~d~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~g~~d~~v~~~~-~~~~~~~~~~~~~  178 (359)
                      ++.+++  .++.++.+|..+|+.+... ......   .........++.+++..   .++.+...+ .+++.+-......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCC
Confidence            444444  6889999999999998884 332111   12223333455433332   367777755 5666666555433


Q ss_pred             ccc----------cEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          179 SRI----------ASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       179 ~~i----------~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      ...          ..-....++ .+..++.++. +..+|+.+++.+.....    ..+..+ ...++..|+.++.++.|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~tg~~~w~~~~----~~~~~~-~~~~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLATGEKLWSKPI----SGIYSL-PSVDGGTLYVTSSDGRLY  225 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSS-EEEEETTTTEEEEEECS----S-ECEC-EECCCTEEEEEETTTEEE
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCe-EEEEECCCCCEEEEecC----CCccCC-ceeeCCEEEEEeCCCEEE
Confidence            221          122222344 6777777776 44449999996643321    222221 345677888777999999


Q ss_pred             EEEccCCC
Q 018248          249 VFGLKVDS  256 (359)
Q Consensus       249 iw~~~~~~  256 (359)
                      .||+++++
T Consensus       226 ~~d~~tG~  233 (238)
T PF13360_consen  226 ALDLKTGK  233 (238)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCC
Confidence            99999986

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.99  E-value=5.6e-06  Score=66.87  Aligned_cols=212  Identities=14%  Similarity=0.094  Sum_probs=132.8

Q ss_pred             EEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248           11 HLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus        11 ~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      ++.|.+ ++.++.+.. .+.|..|+.+++.... ..+    .. ...+.+....+.++++.     .+.+.++|+.+++.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----~~-~~G~~~~~~~g~l~v~~-----~~~~~~~d~~~g~~   72 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----PG-PNGMAFDRPDGRLYVAD-----SGGIAVVDPDTGKV   72 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES----SS-EEEEEEECTTSEEEEEE-----TTCEEEEETTTTEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec----CC-CceEEEEccCCEEEEEE-----cCceEEEecCCCcE
Confidence            578998 666666666 8889999998754432 232    22 44455553334444444     25566669888855


Q ss_pred             Eeeec------cCcceeEEEEecceeEEE-e--------c--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           89 LGELS------FRSEVKNVRLRRDRIVVV-L--------N--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        89 ~~~~~------~~~~v~~~~~~~~~~~~~-~--------d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      .....      .....+++++.|+|.+.+ .        .  +.|..++.. ++...... .-...+-++|+|+++.+++
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEE
T ss_pred             EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheee
Confidence            44333      235678999999998776 1        1  567888875 55433333 2344567999999987655


Q ss_pred             EecCCCCeeEEEEecC--Ce---eeEEe---ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          152 ACPGLLKGQVRVEDYG--TK---KSKYI---TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~--~~---~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                      +-  +..+.|..++.+  +.   ..+.+   ....+..-.+++..+|++.++....+. |.++|.. |+.+..+...  .
T Consensus       151 ~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p--~  224 (246)
T PF08450_consen  151 AD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP--V  224 (246)
T ss_dssp             EE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S--S
T ss_pred             cc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC--C
Confidence            54  345566664442  32   11222   222224778999999998777777787 9999965 9988888764  2


Q ss_pred             cceEEEEec-CCCCEEEEE
Q 018248          224 AEIYSLAFS-SNAQWLAAS  241 (359)
Q Consensus       224 ~~i~~~~~s-~~~~~l~~~  241 (359)
                      ..+++++|. ++.+.|+..
T Consensus       225 ~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  225 PRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             SSEEEEEEESTTSSEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEE
Confidence            489999994 676655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.97  E-value=4.3e-07  Score=69.91  Aligned_cols=195  Identities=9%  Similarity=0.037  Sum_probs=118.6

Q ss_pred             ecCeEEEEEccccee-eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccc--cccEEEEcc
Q 018248          112 LNQKVYVYNFTDLKL-VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHAS--RIASIAMTL  188 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~--~i~~~~~s~  188 (359)
                      .-|...+|...+.+- ++....+...+..+.-..+....++.+  +.|.++++...++...+.. .|..  .+.++++++
T Consensus        92 ~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~--sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~sn  168 (344)
T KOG4532|consen   92 ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIA--SNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSN  168 (344)
T ss_pred             ccceeeeecccCcccceeeecccccchhhhhhhcccccceeec--cCCcceeEEEEecCcccce-eeccccceeeeEEcC
Confidence            567888888765433 222333444444332222333333433  3677777755555433322 2322  378999999


Q ss_pred             CCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccC
Q 018248          189 DGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSA  267 (359)
Q Consensus       189 ~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  267 (359)
                      |++++++.+.... |..|.+... +.+...........-.+..|+.....+|++..||++.|||++.....-        
T Consensus       169 d~~~~~~Vgds~~-Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm--------  239 (344)
T KOG4532|consen  169 DPSWGSSVGDSRR-VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM--------  239 (344)
T ss_pred             CCceEEEecCCCc-ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch--------
Confidence            9999999999888 999988653 332222222133445688899999999999999999999999865210        


Q ss_pred             CCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC--CEEEEEecCCeEEEEEeCCCCCCceE
Q 018248          268 SEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN--NTIVIVGLDGSYYKCEFDPMKGGEMH  345 (359)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~~~~~~~~  345 (359)
                                              ......     -..|.|.+..+.|++-|  ..|+..-.=+.+++.++..-..-+.+
T Consensus       240 ------------------------~~~sst-----rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  240 ------------------------AEISST-----RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             ------------------------hhhccc-----CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence                                    000001     11256889999999855  44555555677777766654333333


Q ss_pred             Ee
Q 018248          346 QL  347 (359)
Q Consensus       346 ~~  347 (359)
                      ++
T Consensus       291 ~i  292 (344)
T KOG4532|consen  291 VI  292 (344)
T ss_pred             ec
Confidence            33

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.6e-08  Score=82.95  Aligned_cols=243  Identities=12%  Similarity=0.094  Sum_probs=164.7

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      |.+.|+.+.-+ -.+++.+++ ||.++.|.-.. ....+...+. .|...+..++.+.++-....++.   .|..++++|
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d---~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVED---PDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccC---cccceeEEE
Confidence            66777777544 456889999 99999998764 2233334444 67777888887777665555442   389999999


Q ss_pred             CCCccEEeeec---cCcceeEEEEecce--eEEE----ecCeEEEEEcccc--eeeeeEeccCCCceeeeeecCCCccEE
Q 018248           83 DHENRYLGELS---FRSEVKNVRLRRDR--IVVV----LNQKVYVYNFTDL--KLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        83 ~~~~~~~~~~~---~~~~v~~~~~~~~~--~~~~----~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      +++-..+.-++   .++.+..+ .++..  ..++    .++.+.++|-...  +....-..|..++..+.+.+.++.  .
T Consensus        83 vEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds--~  159 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS--A  159 (558)
T ss_pred             eeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc--e
Confidence            88766554444   22322222 22221  1222    7899999997432  233333568889999999998885  3


Q ss_pred             EecCCCCeeEEEEecCCe---e-------------eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE
Q 018248          152 ACPGLLKGQVRVEDYGTK---K-------------SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ  215 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~~---~-------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~  215 (359)
                      .+ ....|.|.-|...+.   +             +..+...+....++.|+|+|..+.+-+.|.. |++++.++|+.++
T Consensus       160 vS-iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGklvq  237 (558)
T KOG0882|consen  160 VS-IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKLVQ  237 (558)
T ss_pred             ee-ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchhhh
Confidence            33 556788998988751   0             1112233557789999999999999999999 9999999987665


Q ss_pred             EeecC-------------------------------CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          216 EMRRG-------------------------------AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       216 ~~~~~-------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      .+...                               .....-+.+.|...|++|+.++-=| |+|.++.+.+..
T Consensus       238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV  310 (558)
T ss_pred             hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence            43310                               0112345677888899999998777 999999987743

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.95  E-value=1.2e-08  Score=88.91  Aligned_cols=289  Identities=10%  Similarity=0.087  Sum_probs=182.4

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCC-cce-eeeecccCCCCceeEEEEeccCCE-EEEEecCCCCCCeEEEEE
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPY-KPI-MRRDFDRNPRGGTQLVSMLFRSNI-ICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~-~~~-~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~~d~~i~iwd   82 (359)
                      ..++.++..+|.|+-+|.++.-.+.+-|++.. ... +...+.   .-.+..+.|++.+.. ..+++.   ....-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~t---pw~vad~qws~h~a~~~wiVst---s~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHIT---PWQVADVQWSPHPAKPYWIVST---SNQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccC---cchhcceecccCCCCceeEEec---Ccchhhhhh
Confidence            45678899999999999999777788888633 222 222221   233555677766533 223333   347778888


Q ss_pred             CCC--ccEEeeec--cCcceeEEEEecceeEEE----ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           83 DHE--NRYLGELS--FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        83 ~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      +..  .+.+.-+.  |...|+++.|+|+..-+.    .|-.+..||+++. .++..+.........++|+..... ++|+
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-vlas  176 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-VLAS  176 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-hhhh
Confidence            653  33443333  888999999999876554    8899999999765 344555555555667888776554 3443


Q ss_pred             cCCCCeeEEEEecCC--eeeEEeecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCc--EEEEeecCCCCcceEE
Q 018248          154 PGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGS--LLQEMRRGAERAEIYS  228 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~i~~  228 (359)
                        +..+.|.+|+.+.  .++..+++|...|+.+.|..- -..+.+++.|++ |+.||.....  ..+...   ...+|..
T Consensus       177 --shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~piw~  250 (1081)
T KOG0309|consen  177 --SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPIWR  250 (1081)
T ss_pred             --ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCccee
Confidence              3566788888764  678888899999999998753 336789999999 9999976543  233333   3457777


Q ss_pred             EEecCCCC--EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248          229 LAFSSNAQ--WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP  306 (359)
Q Consensus       229 ~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (359)
                      -.+-|-|.  ++.---.+..+.+++.+....+.                                ..++..+++.+|..|
T Consensus       251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~--------------------------------n~~~~~~pVh~F~GH  298 (1081)
T KOG0309|consen  251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW--------------------------------NVFDLNTPVHTFVGH  298 (1081)
T ss_pred             ccccccCceeEeccccCCeeeeeccccchhhhh--------------------------------ccccCCcceeeecCc
Confidence            77877544  33222223355555555432110                                112223344445555


Q ss_pred             CCcEEEeeecc--------c--CCEEEEEecCCeEEEEEeCCC
Q 018248          307 ENVQYLVGFGR--------Q--NNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       307 ~~~v~~~~~s~--------~--~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      .+.|...-|-.        |  .-+|++=+.|-.+++|.++.+
T Consensus       299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            54443333321        1  246899999999999998764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.95  E-value=4.2e-06  Score=67.27  Aligned_cols=211  Identities=18%  Similarity=0.191  Sum_probs=129.5

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEE---EEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNV---RLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      ++.|..+|..+|+.+............   ....++.+++  .++.|+.||..+|+.+..... ...+.... ...++.+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence            689999999999999988743222222   3334555555  899999999999999988876 33332222 3344444


Q ss_pred             EEEecCCCCeeEEEEe-cCCeeeEEe-eccc---ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          150 VMACPGLLKGQVRVED-YGTKKSKYI-TAHA---SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~-~~~~~~~~~-~~~~---~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      ++++   .++.++.++ .+++.+... ....   ..........++..++.+..++. |..+|.++|+.+..........
T Consensus        80 ~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   80 YVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred             cccc---ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence            4443   466777755 666666653 3221   11122333334778888888888 9999999999988876532111


Q ss_pred             --c------e-EEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248          225 --E------I-YSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS  295 (359)
Q Consensus       225 --~------i-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (359)
                        .      + ..+.+. ++ .+..++.++.+.-+|+.+++..                                   |.
T Consensus       156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~-----------------------------------w~  198 (238)
T PF13360_consen  156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL-----------------------------------WS  198 (238)
T ss_dssp             S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE-----------------------------------EE
T ss_pred             CcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE-----------------------------------EE
Confidence              1      1 233333 44 6666777775333388887510                                   10


Q ss_pred             cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .         +...... ...+++..|++++.+|.++.|++..
T Consensus       199 ~---------~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  199 K---------PISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             E---------CSS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             e---------cCCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence            0         0111111 2456778999888999999998775

...

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.93  E-value=7e-06  Score=63.27  Aligned_cols=127  Identities=9%  Similarity=-0.025  Sum_probs=89.5

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS   96 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~   96 (359)
                      .++++.|+ .+.+.-.|..+++...+..+    ...+.+-++. -++.+++..    ..+.+++.+.++|+.+..+...+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il----g~RiE~sa~v-vgdfVV~GC----y~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL----GVRIECSAIV-VGDFVVLGC----YSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh----CceeeeeeEE-ECCEEEEEE----ccCcEEEEEecchhheeeeeehh
Confidence            35667788 88889999999988887776    4555554444 466666666    67999999999998888887444


Q ss_pred             ceeE-EEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           97 EVKN-VRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        97 ~v~~-~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .|.+ ....+++.++.   .|++.+..|.++...+...+.........++.+-...++.++
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~  154 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI  154 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence            4543 33456666665   899999999998888887765554444455666444455554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.93  E-value=2.5e-06  Score=73.99  Aligned_cols=224  Identities=13%  Similarity=0.087  Sum_probs=127.9

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCc-------eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGG-------TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL   89 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~   89 (359)
                      +..+.+++ ++.+.-+|.++++......+. .....       ...-.....++.+++.+    .++.+..+|.++|+.+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~v~v~~----~~g~l~ald~~tG~~~  143 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLS-EKDGWFSKNKSALLSGGVTVAGGKVYIGS----EKGQVYALNAEDGEVA  143 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCC-CcccccccccccccccccEEECCEEEEEc----CCCEEEEEECCCCCCc
Confidence            44555555 889999999999888877764 10000       00000111244555444    5799999999999998


Q ss_pred             eeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCcee-eeeec--CCCccEEEecCCCCeeEEE-
Q 018248           90 GELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGL-CDVSQ--NAGPMVMACPGLLKGQVRV-  163 (359)
Q Consensus        90 ~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~g~~d~~v~~-  163 (359)
                      .+.+....+.+--.-.++.+++  .++.+..+|.++|+.+............ ..-+|  .++.. ++  +..++.+.. 
T Consensus       144 W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v-~~--~~~~g~v~a~  220 (394)
T PRK11138        144 WQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGA-IV--GGDNGRVSAV  220 (394)
T ss_pred             ccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEE-EE--EcCCCEEEEE
Confidence            8887544443321222455555  7889999999999998887643211100 00011  12222 22  234666665 


Q ss_pred             EecCCeeeEEeeccc----c---cccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          164 EDYGTKKSKYITAHA----S---RIASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       164 ~~~~~~~~~~~~~~~----~---~i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +..+++.+-......    .   ....+.-+|  .+..++.++.+|. +..+|..+|+.+-.....    ....+..  +
T Consensus       221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~~--~  293 (394)
T PRK11138        221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFAV--D  293 (394)
T ss_pred             EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcEE--E
Confidence            444444332221100    0   011111122  2445667778898 999999999887655431    1112222  4


Q ss_pred             CCEEEEEcCCCcEEEEEccCCC
Q 018248          235 AQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +..|+.++.+|.+..+|.++++
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCc
Confidence            5677778889999999998876

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.92  E-value=6.3e-06  Score=66.33  Aligned_cols=196  Identities=14%  Similarity=0.149  Sum_probs=126.9

Q ss_pred             EEEeccC-CEEEEEecCCCCCCeEEEEECCCccEEeeecc-Ccce--eEEEEecceeEEE--------ecCeEEEEEcc-
Q 018248           56 VSMLFRS-NIICLVNSGPHQSNKVMIWDDHENRYLGELSF-RSEV--KNVRLRRDRIVVV--------LNQKVYVYNFT-  122 (359)
Q Consensus        56 ~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v--~~~~~~~~~~~~~--------~d~~i~i~d~~-  122 (359)
                      ++.+|.. ..++++--   .-....+||..+++....+.. ++.-  -.-.|++||+++.        ..|.|-|||.. 
T Consensus        10 ~a~~p~~~~avafaRR---PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARR---PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             eeeCCCCCeEEEEEeC---CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            4555633 34444431   224568899999998887762 2221  1467999999888        46789999997 


Q ss_pred             cceeeeeEeccCCCceeeeeecCCCccEEEecCCC----C------------eeEEEEecCCeeeEE--e--eccccccc
Q 018248          123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL----K------------GQVRVEDYGTKKSKY--I--TAHASRIA  182 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----d------------~~v~~~~~~~~~~~~--~--~~~~~~i~  182 (359)
                      +.+.+..+..+.-.-.-+.+.|+++.+++|-.|-.    .            ..++++..++..+..  +  .-|+..|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            67788888776555556778899987666653211    1            223334445554444  3  33777899


Q ss_pred             EEEEccCCcEEEEEeCCCC------eEEEEEcCCCcEEEEeecC-----CCCcceEEEEecCCCCEEEEEc-CCCcEEEE
Q 018248          183 SIAMTLDGRFVATASSKGT------LIRVFNTMDGSLLQEMRRG-----AERAEIYSLAFSSNAQWLAASS-DKGTVHVF  250 (359)
Q Consensus       183 ~~~~s~~~~~l~~~~~dg~------~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw  250 (359)
                      -+++.++|..++..-..|.      +|-+++  .++.+..+...     .-.+.+-+|++++++..+++.+ .-+.+.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            9999999987766544442      134443  33333333321     1236899999999998876555 66789999


Q ss_pred             EccCCC
Q 018248          251 GLKVDS  256 (359)
Q Consensus       251 ~~~~~~  256 (359)
                      |..++.
T Consensus       245 d~~tg~  250 (305)
T PF07433_consen  245 DAATGR  250 (305)
T ss_pred             ECCCCC
Confidence            999987

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.90  E-value=8.5e-06  Score=65.59  Aligned_cols=234  Identities=18%  Similarity=0.199  Sum_probs=144.7

Q ss_pred             CCceEEEEEcc-CCCEEEEec-CCc-eEEEEcCCCcceeeeecccCCCCce--eEEEEeccCCEEEEEecCCC-CCCeEE
Q 018248            6 PITIHHLALNQ-DHGCFATGT-ETG-FRVYLSDPYKPIMRRDFDRNPRGGT--QLVSMLFRSNIICLVNSGPH-QSNKVM   79 (359)
Q Consensus         6 ~~~v~~~~~s~-~g~~l~~~~-d~~-i~iw~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~~~~~~~~-~d~~i~   79 (359)
                      +..-..++.+| ++..++.+. -|. ..+||..+++......-.   .+.-  .--.|+++++.++..-.... ..|.|-
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~---~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP---PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC---CCCEEecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence            45667889999 566677787 555 789999987766433321   1111  12357777877765532211 468999


Q ss_pred             EEECC-CccEEeeec-cCcceeEEEEecceeEEE-ec--------------------CeEEEEEcccceeeeeEec----
Q 018248           80 IWDDH-ENRYLGELS-FRSEVKNVRLRRDRIVVV-LN--------------------QKVYVYNFTDLKLVDQIET----  132 (359)
Q Consensus        80 iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d--------------------~~i~i~d~~~~~~~~~~~~----  132 (359)
                      |||.. +.+.+.++. +.-....+.+.||+..++ .+                    -.+...|..+|+.+.+...    
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            99988 567777777 666677888999995444 22                    2455566667777666433    


Q ss_pred             cCCCceeeeeecCCCccEEEecCCCCe-------eEEEEecCCeeeEEee-------cccccccEEEEccCCcEEEEEeC
Q 018248          133 VVNPTGLCDVSQNAGPMVMACPGLLKG-------QVRVEDYGTKKSKYIT-------AHASRIASIAMTLDGRFVATASS  198 (359)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~-------~v~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~  198 (359)
                      +...+.-+++..++.   +++..-..|       .+.++... ..+..+.       .-.+.+-+|++++++.++++.+-
T Consensus       161 ~~lSiRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cccceeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence            444556666666543   111111111       11112222 2122222       23467899999999998888876


Q ss_pred             CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .|..+.+||..+++.+.....    ..+..++-.+++ ++++.+ .|.  ++.+..
T Consensus       237 rGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~--~~~~~~  284 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQ--LIRLSP  284 (305)
T ss_pred             CCCEEEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCC-Ccc--EEEccC
Confidence            665599999999998877754    356778877776 555544 453  444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.90  E-value=1.2e-05  Score=69.45  Aligned_cols=224  Identities=16%  Similarity=0.172  Sum_probs=118.4

Q ss_pred             EEEEccCCCEEEEecCC------------ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248           11 HLALNQDHGCFATGTET------------GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .++.+|.|..+|...|.            .|+||+.. |+.+....+.   .+.+-.+.|..+.+ ++++.    .||.+
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~---~~~iv~~~wt~~e~-LvvV~----~dG~v  103 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWD---SGRIVGMGWTDDEE-LVVVQ----SDGTV  103 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEEC---CCCEEEEEECCCCe-EEEEE----cCCEE
Confidence            45667777777777644            48888876 3455556665   37777777776544 44555    58999


Q ss_pred             EEEECCCccEEeeec--------cCcceeEEEEecceeEEE-ecCeEEEEEcccce-eeeeEeccCCCceeeeeecCCCc
Q 018248           79 MIWDDHENRYLGELS--------FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLK-LVDQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
                      +++|+. |+....+.        ....+....+..+|..+. .++.+.+.+-.... ....+.............+....
T Consensus       104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence            999975 33311111        112222234444676655 66666555432211 11111110000000000111111


Q ss_pred             cEEEecCCCCeeEEEEecCCeeeEEeec-------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248          149 MVMACPGLLKGQVRVEDYGTKKSKYITA-------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      ..+..   .++.+.+....+..+..+..       ..+++..+++||+|+++|.-..+|. +.+....-.+.+.++... 
T Consensus       183 i~~l~---~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~~-  257 (410)
T PF04841_consen  183 IPLLS---SDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDTD-  257 (410)
T ss_pred             ceEee---cCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeecC-
Confidence            11111   12233332222222222222       2368999999999999999999999 999887666666666653 


Q ss_pred             CCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          222 ERAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       222 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      .......+.|.-+...++.-  ...+.+..
T Consensus       258 ~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  258 SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            23466778886554433332  33455544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=4e-07  Score=80.11  Aligned_cols=284  Identities=10%  Similarity=0.143  Sum_probs=182.7

Q ss_pred             CCCCceEEEEEccCC------------CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC----CEEE
Q 018248            4 PDPITIHHLALNQDH------------GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS----NIIC   66 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g------------~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~   66 (359)
                      .|+..|+.+.|.|-.            -+||++. .|.|.+||........  .++ .|..++..++|.+..    ..++
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--~l~-~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--WLS-HSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--hhc-CCCcchhheeeeeccCcchheeE
Confidence            478899999998632            2457777 8999999998655543  333 567888888887643    2344


Q ss_pred             EEecCCCCCCeEEEEECCCccEEeeeccC-cceeEEEEecc-----------eeEE------------------------
Q 018248           67 LVNSGPHQSNKVMIWDDHENRYLGELSFR-SEVKNVRLRRD-----------RIVV------------------------  110 (359)
Q Consensus        67 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-----------~~~~------------------------  110 (359)
                      ...    ....+.+|+..+|+....+... ....|+.+.|-           |..+                        
T Consensus       130 aIh----~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S  205 (1062)
T KOG1912|consen  130 AIH----GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS  205 (1062)
T ss_pred             Eec----CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence            444    2488999998888776665522 22222333331           0000                        


Q ss_pred             ------------------------------------------E-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248          111 ------------------------------------------V-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus       111 ------------------------------------------~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                                                                + ....+.++|++-..++..+....+.+..+.+-|+++
T Consensus       206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~  285 (1062)
T KOG1912|consen  206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR  285 (1062)
T ss_pred             chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence                                                      0 344566666666666666666667777888889888


Q ss_pred             ccEEEecCCCCeeEEEEecCCe--------------------eeEEe---------------------------------
Q 018248          148 PMVMACPGLLKGQVRVEDYGTK--------------------KSKYI---------------------------------  174 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~~--------------------~~~~~---------------------------------  174 (359)
                      .-.+.+ ...||.+.+|.....                    .++.+                                 
T Consensus       286 rd~Lfc-lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~  364 (1062)
T KOG1912|consen  286 RDALFC-LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS  364 (1062)
T ss_pred             cceEEE-EecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence            777777 667888888765420                    00000                                 


Q ss_pred             ---------------------------------------ecccccccEEEEcc-----------CC-------cEEEEEe
Q 018248          175 ---------------------------------------TAHASRIASIAMTL-----------DG-------RFVATAS  197 (359)
Q Consensus       175 ---------------------------------------~~~~~~i~~~~~s~-----------~~-------~~l~~~~  197 (359)
                                                             .+|.....+....|           .|       .++|.|.
T Consensus       365 ~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT  444 (1062)
T KOG1912|consen  365 NGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT  444 (1062)
T ss_pred             cCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence                                                   01222222222211           11       2678899


Q ss_pred             CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc---------CCCcEEEEEccCCCCCCCCCccccCC
Q 018248          198 SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS---------DKGTVHVFGLKVDSGSPGTSKLHSAS  268 (359)
Q Consensus       198 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~  268 (359)
                      ..|+ |.++|+.++..-..+..  |.+.|.++.|-...+++-.+.         --+.+.|-|+++|....         
T Consensus       445 ~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~---------  512 (1062)
T KOG1912|consen  445 NSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR---------  512 (1062)
T ss_pred             CCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---------
Confidence            9999 99999999988888877  788999999987665553332         12346677777765221         


Q ss_pred             CCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          269 EPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                               |      ..++.+. .+|..+..|.-+++|+..-.+--+.+|++..
T Consensus       513 -------------------------f------R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt  552 (1062)
T KOG1912|consen  513 -------------------------F------RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT  552 (1062)
T ss_pred             -------------------------c------ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence                                     1      1112222 6788899999999999999999999998843

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.89  E-value=9.1e-08  Score=73.14  Aligned_cols=189  Identities=12%  Similarity=0.153  Sum_probs=109.4

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCccee-----EEEEecceeEEE--------ecCeE
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVK-----NVRLRRDRIVVV--------LNQKV  116 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~--------~d~~i  116 (359)
                      .++-..-+.+-.++.+++..    .|+.+.+.+.+.   ...+.+.-++.     +.+....+..+.        .-+..
T Consensus        89 sep~p~~~~s~~~t~V~~~~----~dg~~~v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   89 SEIDPNDACTMTDNRVCIGY----ADGSLAVFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             CCCCCcccccccCCceEecC----CCceEEEEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence            33333333333455666555    789999998654   22222221111     112222333332        33445


Q ss_pred             EEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc-CCcEE
Q 018248          117 YVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL-DGRFV  193 (359)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l  193 (359)
                      +.|+++..+.+..-......+..++-+|....  +.+.|+.||.+-+|+.+.  .+...+..|+.+++.+-|+| ++..|
T Consensus       162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~--~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQH--LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             eeecccccccccccccccccchhhhCCccccc--EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            56665433222221222334777777887766  444488999999988775  34455788999999999998 56789


Q ss_pred             EEEeCCCCeEEEEEcCCCcEEEE----------eecC-------------CCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          194 ATASSKGTLIRVFNTMDGSLLQE----------MRRG-------------AERAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~~~~~~----------~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      +++++||. +.-||..+ +.+..          +.+.             .....|+++.  --|..|++|++-+.|+++
T Consensus       240 ft~sedGs-lw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD--V~g~~lVcgtd~eaIyl~  315 (319)
T KOG4714|consen  240 FTCSEDGS-LWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD--VLGPCLVCGTDAEAIYLT  315 (319)
T ss_pred             eEecCCCc-EEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeee--ccCceEEeccccceEEEe
Confidence            99999999 99999653 22211          0000             0001223322  347788998888888876


Q ss_pred             E
Q 018248          251 G  251 (359)
Q Consensus       251 ~  251 (359)
                      +
T Consensus       316 ~  316 (319)
T KOG4714|consen  316 R  316 (319)
T ss_pred             c
Confidence            5

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=1.4e-08  Score=85.64  Aligned_cols=233  Identities=12%  Similarity=0.201  Sum_probs=151.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-----ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      .|...|..++--.+.+-+++++ |++|++|.+.+..     ..+..++. .|..++..+.+..+-..++  +    .|+.
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~--S----cD~g  805 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIA--S----CDGG  805 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceee--e----ccCc
Confidence            3667777777666777888888 9999999987422     22334444 7899998888876655544  4    4799


Q ss_pred             EEEEECCCccEEeeec---cCcceeEEEEecc--e-eEEE---ecCeEEEEEcccceeeeeEec-----cCCCceeeeee
Q 018248           78 VMIWDDHENRYLGELS---FRSEVKNVRLRRD--R-IVVV---LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVS  143 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~--~-~~~~---~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~  143 (359)
                      |.+||.--++.+..+.   ..+.+..+..-++  . .+++   ...+|+++|.+..+-...++.     +...+.++++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999988887766543   2233333333332  2 2233   678999999988766555543     33446778888


Q ss_pred             cCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEE-EEcCCCcEEEEeecCC
Q 018248          144 QNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRV-FNTMDGSLLQEMRRGA  221 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~i-wd~~~~~~~~~~~~~~  221 (359)
                      +.++.  ++. +-.+|.+.+ +.++++.+..++.-......++ .|..+.|+....|.+ +.+ |...++....+.+.. 
T Consensus       886 ~~GN~--lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgimh~q~kpp-  959 (1034)
T KOG4190|consen  886 DKGNK--LAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIMHLQDKPP-  959 (1034)
T ss_pred             cCcch--hhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCeeeeccCCC-
Confidence            88877  554 445777777 7777777776665555555554 366677888888888 888 987777665555432 


Q ss_pred             CCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          222 ERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       222 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                       +.+..-+  -.-|..|+++.....+.||.-
T Consensus       960 -pepahfl--qsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  960 -PEPAHFL--QSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             -Ccchhhh--hccCceeEEeccCcEEEEEec
Confidence             1111111  123667777777677777743

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=1e-08  Score=56.27  Aligned_cols=39  Identities=31%  Similarity=0.594  Sum_probs=35.5

Q ss_pred             CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      ++++.++..  |...|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356778887  788999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.84  E-value=9.8e-06  Score=70.33  Aligned_cols=218  Identities=10%  Similarity=0.048  Sum_probs=123.8

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS   96 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~   96 (359)
                      +..+++++ ++.+..+|.++++......+.    +.+...-.. .++.+++..    .++.+..+|.++|+.+..+....
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~ssP~v-~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~  190 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA----GEALSRPVV-SDGLVLVHT----SNGMLQALNESDGAVKWTVNLDV  190 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC----CceecCCEE-ECCEEEEEC----CCCEEEEEEccCCCEeeeecCCC
Confidence            44566666 899999999999988877653    222111111 234444444    46899999999999988876332


Q ss_pred             ce------eEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCC-------ceeeeeec--CCCccEEEecCCCCe
Q 018248           97 EV------KNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNP-------TGLCDVSQ--NAGPMVMACPGLLKG  159 (359)
Q Consensus        97 ~v------~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~l~~~g~~d~  159 (359)
                      +.      .+-... ++..++  .++.+..+|..+++.+.........       ...+..+|  .++.+++.   +.+|
T Consensus       191 ~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~---~~~g  266 (394)
T PRK11138        191 PSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL---AYNG  266 (394)
T ss_pred             CcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE---EcCC
Confidence            11      111122 233333  7889999999988877665321110       00011111  22332222   2466


Q ss_pred             eEEEEe-cCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248          160 QVRVED-YGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       160 ~v~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  238 (359)
                      .+...+ .+++.+-...  ......+.  ..+..++.++.+|. +..+|..+|+.+-......+ ....+...  .+.+|
T Consensus       267 ~l~ald~~tG~~~W~~~--~~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l  338 (394)
T PRK11138        267 NLVALDLRSGQIVWKRE--YGSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYL  338 (394)
T ss_pred             eEEEEECCCCCEEEeec--CCCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEE
Confidence            666533 3444332221  11111222  24556777888999 99999999987654432111 11222222  24577


Q ss_pred             EEEcCCCcEEEEEccCCC
Q 018248          239 AASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~  256 (359)
                      +.++.+|.|++.|..+++
T Consensus       339 ~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        339 VVGDSEGYLHWINREDGR  356 (394)
T ss_pred             EEEeCCCEEEEEECCCCC
Confidence            788999999999998876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.84  E-value=1.1e-08  Score=56.14  Aligned_cols=38  Identities=47%  Similarity=0.683  Sum_probs=36.0

Q ss_pred             eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          169 KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      +++..+.+|...|++++|+|++.+|++++.|+. |++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            567889999999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=4.9e-07  Score=78.94  Aligned_cols=223  Identities=10%  Similarity=0.106  Sum_probs=139.2

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.-+.|+.+.+.|.+.. +|-|.+|-+-.+.-..... .......|..++|..++..+.++-    .||.|.+=.
T Consensus        69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~kIcIvY----eDGavIVGs  143 (1189)
T KOG2041|consen   69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTKICIVY----EDGAVIVGS  143 (1189)
T ss_pred             cCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcEEEEEE----ccCCEEEEe
Confidence            4899999999999999999988 9999999887654321111 101245677788888888898888    789988877


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc-------eeeeeEe----ccCCCceeeee-----
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-------KLVDQIE----TVVNPTGLCDV-----  142 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-------~~~~~~~----~~~~~~~~~~~-----  142 (359)
                      +..++ +.--. .......+.|++|...+.   .+|.+.+||.+..       .+.....    .....+..+.|     
T Consensus       144 vdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  144 VDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             eccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            55433 22222 122345788999987665   8999999997431       1111111    11111222222     


Q ss_pred             ---ecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC--------CeEEEEEcCC
Q 018248          143 ---SQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG--------TLIRVFNTMD  210 (359)
Q Consensus       143 ---~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------~~i~iwd~~~  210 (359)
                         -|+...  ++. +..+|.+.+ -..+......+. ..-.+..+.|+++|..||+++.+.        ..|.+|. .-
T Consensus       223 ~~v~pdrP~--lav-cy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~  297 (1189)
T KOG2041|consen  223 QPVPPDRPR--LAV-CYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PY  297 (1189)
T ss_pred             ccCCCCCCE--EEE-EEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cc
Confidence               223333  333 346777777 222222222222 236788999999999999987643        1155554 46


Q ss_pred             CcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          211 GSLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      |+.+.+++.  ....|++++|-..|-.++
T Consensus       298 G~i~gtlkv--pg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  298 GHIVGTLKV--PGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             hhheEEEec--CCceeeeeEEcCCceEEE
Confidence            777778876  456788888865554443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.79  E-value=4e-07  Score=69.71  Aligned_cols=73  Identities=15%  Similarity=0.348  Sum_probs=59.4

Q ss_pred             cccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccC
Q 018248          180 RIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       180 ~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .|.+++-+|..+ .+++|+.||. +-+||.++......+. ..|+.+|+.+-|+| ++..|+++++||.+.-||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l-~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLL-KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHH-HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            488899888654 6677888898 9999999885544433 22789999999998 677899999999999999875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.79  E-value=4.4e-05  Score=62.38  Aligned_cols=239  Identities=14%  Similarity=0.159  Sum_probs=140.9

Q ss_pred             EEEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccCCCC----ceeEEEEeccCCEEEEEecCCCC
Q 018248           10 HHLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRNPRG----GTQLVSMLFRSNIICLVNSGPHQ   74 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~~~~~   74 (359)
                      -.+..+||++.+++++           ...|.+||..+........++.+|..    ......++.+++.+++..-.  .
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T--P  116 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT--P  116 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES--S
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC--C
Confidence            3467899999987743           23489999998877766666522111    22345666777776665544  3


Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcc-cceeeeeEe----ccCCCce-eeeeecCCC
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFT-DLKLVDQIE----TVVNPTG-LCDVSQNAG  147 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~~~~~~----~~~~~~~-~~~~~~~~~  147 (359)
                      -..|.|.|+..++.+.++..++...-.-..+++...+ .||.+.-..+. .|+......    ....++. .-++...+.
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence            4788999999999988887665444333344443333 99999998885 555443221    1111111 122333333


Q ss_pred             ccEEEecCCCCeeEEEEecCCeeeEE---eec----------ccccccEEEEccCCcEEEEEe---CCC------CeEEE
Q 018248          148 PMVMACPGLLKGQVRVEDYGTKKSKY---ITA----------HASRIASIAMTLDGRFVATAS---SKG------TLIRV  205 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~~~~~~---~~~----------~~~~i~~~~~s~~~~~l~~~~---~dg------~~i~i  205 (359)
                      ..++.+   .+|.|+--+..+.....   +..          ..+.-.-+++++....|.+.-   .++      +.|.+
T Consensus       197 ~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  197 RLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             EEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             eEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            333333   57788775554433222   110          123445678887655444321   111      12888


Q ss_pred             EEcCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEE-cCCCcEEEEEccCCC
Q 018248          206 FNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAAS-SDKGTVHVFGLKVDS  256 (359)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~iw~~~~~~  256 (359)
                      +|+.+++.+..+...   .++.++..+.+.+ +|++. ..++.+.+||..+++
T Consensus       274 ~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  274 YDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            999999999999852   4688999998776 55444 467899999999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=8.8e-08  Score=76.17  Aligned_cols=169  Identities=18%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-----cE
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-----SL  213 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-----~~  213 (359)
                      .++|+-+-.... ++.|. +-.+-+-+..+...+.+. .++.|.++.|...++++..|...|. |..+|++.+     .+
T Consensus       216 ~CawSlni~gyh-fs~G~-sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  216 SCAWSLNIMGYH-FSVGL-SQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhhccceee-ecccc-cceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCcc
Confidence            446665444433 33244 445555444444444554 5778999999988999999999999 999999864     45


Q ss_pred             EEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecce
Q 018248          214 LQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPK  292 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (359)
                      ...+.   |.+.|+++..-. ++++|++.+.+|+|++||++..+...                     +           
T Consensus       292 a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---------------------~-----------  336 (425)
T KOG2695|consen  292 AQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK---------------------S-----------  336 (425)
T ss_pred             eEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc---------------------c-----------
Confidence            55555   778999988766 78899999999999999998766321                     0           


Q ss_pred             EEecccceeEEeecC--CcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCCC
Q 018248          293 YFSSKWSMAQFRLPE--NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPE  356 (359)
Q Consensus       293 ~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~~  356 (359)
                             +.++..|-  ..-.-+...+....|++++.|=..+||.++.   |.....-...|..++
T Consensus       337 -------V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~---ghLl~tipf~~s~~e  392 (425)
T KOG2695|consen  337 -------VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS---GHLLCTIPFPYSASE  392 (425)
T ss_pred             -------eeeeecccccccccccccccccceEEEccCeeEEEEEeccc---CceeeccCCCCcccc
Confidence                   00111111  0111233456678899999999999999986   566555555555544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.78  E-value=5.5e-06  Score=71.64  Aligned_cols=217  Identities=14%  Similarity=0.195  Sum_probs=118.1

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      .....++++|+|++++++++|...||.....+..   .     .+.-....|.. .+..++..    ..++|.++.--+.
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k---~-----~G~g~~~vw~~-~n~yAv~~----~~~~I~I~kn~~~   99 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK---A-----FGSGLSFVWSS-RNRYAVLE----SSSTIKIYKNFKN   99 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE---E-----EEE-SEEEE-T-SSEEEEE-----TTS-EEEEETTEE
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc---c-----cCceeEEEEec-CccEEEEE----CCCeEEEEEcCcc
Confidence            3467899999999999988999999985433222   1     12223345655 34455544    3578999743333


Q ss_pred             cEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           87 RYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        87 ~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      +....++.+..+..+-.   |.++.  .++.|.+||..+++.+..+...  ++..+.|+++++.+.+++    +..+.+.
T Consensus       100 ~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~il  170 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIYIL  170 (443)
T ss_dssp             -TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEE
T ss_pred             ccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEEEE
Confidence            33334443333444433   66665  6677999999999999998754  367899999988755554    4567775


Q ss_pred             ecCCe------------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          165 DYGTK------------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       165 ~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                      ..+..            ....+..-...|.+.+|..+  .++-.+.. . |+-+  ..|+.- .+..  -..++.=+.+.
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yllgy~  241 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLLGYL  241 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEEEEE
T ss_pred             EecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEEEEE
Confidence            55544            45555554678899999766  33333333 5 7663  344432 2221  12466777788


Q ss_pred             CCCCEEEEEcCCCcEEEEEccC
Q 018248          233 SNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      |+.+.+.....|+.|..+.+..
T Consensus       242 ~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  242 PKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             TTTTEEEEE-TT--EEEEE--H
T ss_pred             ccCCEEEEEECCCCEEEEEECH
Confidence            8778888888999898887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.76  E-value=5e-06  Score=77.02  Aligned_cols=232  Identities=13%  Similarity=0.134  Sum_probs=129.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------CCCe
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------QSNK   77 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------~d~~   77 (359)
                      -.+.|.+++||||++.++..+ .+++.+ ...+...+..+.+.   ...-       ..+..+-++.|+.      ..|.
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~-mT~~f~~i~E~~L~---~d~~-------~~sk~v~VGwGrkeTqfrgs~gr  176 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLF-MTKDFEPIAEKPLD---ADDE-------RKSKFVNVGWGRKETQFRGSEGR  176 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEE-Eeccccchhccccc---cccc-------cccccceecccccceeeecchhh
Confidence            357899999999999999888 455444 44434444333331   1100       0112222333220      1122


Q ss_pred             EEEEECCCc-cEEeeeccCcceeEEEEecceeEEE-------ec-CeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248           78 VMIWDDHEN-RYLGELSFRSEVKNVRLRRDRIVVV-------LN-QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        78 i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-------~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
                      ...-+.... +.+......+.=.++.|--||++++       .+ ..|++||-+ |..-..-......-.+++|-|.|..
T Consensus       177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~  255 (1265)
T KOG1920|consen  177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSL  255 (1265)
T ss_pred             hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCe
Confidence            222111110 1111111222334689999998887       34 799999975 5443333333444467888887654


Q ss_pred             cEEEec--CCCCeeEEEEecCCeeeEE----eecccccccEEEEccCCcEEEE---EeCCCCeEEEEEcCCCcEE--EEe
Q 018248          149 MVMACP--GLLKGQVRVEDYGTKKSKY----ITAHASRIASIAMTLDGRFVAT---ASSKGTLIRVFNTMDGSLL--QEM  217 (359)
Q Consensus       149 ~~l~~~--g~~d~~v~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~---~~~dg~~i~iwd~~~~~~~--~~~  217 (359)
                        +++.  -..++.|.++..+|-.-..    +......+..++|+.++..||+   ...... |++|-+.+..-.  +.+
T Consensus       256 --iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l  332 (1265)
T KOG1920|consen  256 --IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSL-VQLWTTGNYHWYLKQEL  332 (1265)
T ss_pred             --EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccce-EEEEEecCeEEEEEEEE
Confidence              4432  2345678888877743322    2334445999999999999987   445555 999998775432  223


Q ss_pred             ecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCC
Q 018248          218 RRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       218 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~  255 (359)
                      ..  .....  +.|+|-. ..|..-..+|...++++.-.
T Consensus       333 ~~--~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~  367 (1265)
T KOG1920|consen  333 QF--SQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWT  367 (1265)
T ss_pred             ec--ccccc--ccccCCCceeEEEEecCCcEEEEEEEEe
Confidence            22  11122  8899843 23444447787777776543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4.8e-07  Score=74.63  Aligned_cols=278  Identities=14%  Similarity=0.157  Sum_probs=168.8

Q ss_pred             CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--c-cEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEE
Q 018248           49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--N-RYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYN  120 (359)
Q Consensus        49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--~-~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d  120 (359)
                      |...+.-+.. .-.+.+..++    .||.++.|.-..  + +.+..+. |...|.+++.+-++.+..    .|..++++|
T Consensus         8 hrd~i~hv~~-tka~fiiqAS----lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQAS----LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEee-ehhheEEeee----cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            5555544332 2235566666    789999998433  1 2222333 778899999999998887    389999999


Q ss_pred             cccceeeeeEeccCCCceeeee-ecCCCccEEEecCCCCeeEEEEecCCe---eeEEeecccccccEEEEccCCcEEEEE
Q 018248          121 FTDLKLVDQIETVVNPTGLCDV-SQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASRIASIAMTLDGRFVATA  196 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~  196 (359)
                      +++-..+..++...-+-.+..+ ++......++.+...++.+.+.+..+.   ....-.-|..+|.++.++|-+..+.+.
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            9876655444433322222222 222223345555566788888665542   233345689999999999999999999


Q ss_pred             eCCCCeEEEEEcCC------CcEEEEeec-------CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCc
Q 018248          197 SSKGTLIRVFNTMD------GSLLQEMRR-------GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSK  263 (359)
Q Consensus       197 ~~dg~~i~iwd~~~------~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  263 (359)
                      ...|. |.-|....      .+....++.       ....+...++.|+|+|..+.+-+.|..|+++++++++.....+.
T Consensus       163 D~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  163 DISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            98999 99998752      111111110       01345778999999999999999999999999999885543322


Q ss_pred             ccc-CCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248          264 LHS-ASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                      ..+ ....+...        ..+...-+.+-...++.   +..+. -.-..+.|...+++|+.|+-=| |.|.+++.   
T Consensus       242 ~~t~~~~q~ks~--------y~l~~VelgRRmavere---lek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t---  306 (558)
T KOG0882|consen  242 VLTDAQYQPKSP--------YGLMHVELGRRMAVERE---LEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT---  306 (558)
T ss_pred             cchhhhhccccc--------cccceeehhhhhhHHhh---HhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec---
Confidence            211 11111110        00000000000000111   11111 1224578899999999999887 88888887   


Q ss_pred             CceEEe
Q 018248          342 GEMHQL  347 (359)
Q Consensus       342 ~~~~~~  347 (359)
                      +.+.++
T Consensus       307 n~v~ri  312 (558)
T KOG0882|consen  307 NTVVRI  312 (558)
T ss_pred             CeEEEE
Confidence            455443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.72  E-value=1.6e-07  Score=83.92  Aligned_cols=174  Identities=15%  Similarity=0.178  Sum_probs=121.4

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCC
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDG  190 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~  190 (359)
                      .-..+..+|+++.+..+........+..+  ..+++  ++.+ |...|+|.+ +..+.+.++++.+|.+.|..+..  .|
T Consensus       155 ~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr--~lf~-G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~G  227 (1118)
T KOG1275|consen  155 LQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNR--NLFC-GDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QG  227 (1118)
T ss_pred             hhhheeeeecccceeeeeeeccCCceEEE--EecCc--EEEe-ecccceEEeecCCcCceeeeeeccccceeeeec--cC
Confidence            45667788988887776665544444433  33443  3555 888999999 65666899999999999887655  68


Q ss_pred             cEEEEEeC---------CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCCC
Q 018248          191 RFVATASS---------KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDSGSPG  260 (359)
Q Consensus       191 ~~l~~~~~---------dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~  260 (359)
                      +.|++++.         |.. |+|||+++.+.+.-+...   ....-+.|.|. ...+++++..|...+-|..+-...+ 
T Consensus       228 NlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-  302 (1118)
T KOG1275|consen  228 NLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-  302 (1118)
T ss_pred             CeEEEeecccccccccccch-hhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceeeccccccCCCc-
Confidence            88888875         445 899999988776655432   12245667774 3467888889999998844332110 


Q ss_pred             CCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          261 TSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                                         .         -..+.          .|. ..+....+|++++.|+.|..+|.|.+|.
T Consensus       303 -------------------~---------~~~~v----------~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  303 -------------------A---------GVKMV----------NPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             -------------------c---------ceeEE----------ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                               0         00011          122 2378899999999999999999999997

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.72  E-value=6e-07  Score=72.92  Aligned_cols=157  Identities=12%  Similarity=0.060  Sum_probs=102.3

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      +..+..++++++||++. ++...++++....+  .+..... ....+-.+.....+...++....+  ....+.+|....
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkag--D~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAG--DVYSFDILSADS  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecC--Cceeeeeecccc
Confidence            34556778999999998 67766777653322  1111110 112222222222333344444433  467788888777


Q ss_pred             ccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248           86 NRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      +.+...+.|-..+.+++++||+++++   .|..|++-.....-.+..+ -+|..-|..+++.++..   |++ |+.|+++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~---LlS-~sGD~tl  217 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL---LLS-GSGDKTL  217 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce---eee-cCCCCcE
Confidence            88888888999999999999999888   7889999777554445554 45888888888766542   555 6679999


Q ss_pred             EEEecCC-eeeE
Q 018248          162 RVEDYGT-KKSK  172 (359)
Q Consensus       162 ~~~~~~~-~~~~  172 (359)
                      ++|+... +.+.
T Consensus       218 r~Wd~~sgk~L~  229 (390)
T KOG3914|consen  218 RLWDITSGKLLD  229 (390)
T ss_pred             EEEecccCCccc
Confidence            9999865 4443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.67  E-value=2.4e-06  Score=73.59  Aligned_cols=188  Identities=12%  Similarity=0.090  Sum_probs=123.6

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCC-CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecC--eEEEEEccc
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQS-NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQ--KVYVYNFTD  123 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~--~i~i~d~~~  123 (359)
                      ..+..-+|++++..++.+.-.. .. ..+.++++.+++........+.-..-+|+|||+.++    .|+  .|+++|+..
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~-~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFEL-GGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cceeccccCcCCCceEEEEEec-CCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            3344456777777766554322 22 469999999998877777777777889999998887    344  677788866


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE--EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCC
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV--EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGT  201 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  201 (359)
                      ++ ...+....+.-..-.|+|+++.+++++  +..|.-.|  .+.++.....+......-....|+|||++|+..+..+.
T Consensus       272 ~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~S--dr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         272 KN-LPRLTNGFGINTSPSWSPDGSKIVFTS--DRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             Cc-ceecccCCccccCccCCCCCCEEEEEe--CCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence            55 333544444444678999999866654  34454444  56666666666555444447889999999987774321


Q ss_pred             --eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC
Q 018248          202 --LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG  245 (359)
Q Consensus       202 --~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  245 (359)
                        .|.+.|+.++...+.+..   ......-.|.++|+.+...+..+
T Consensus       349 ~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         349 QWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             ceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccCC
Confidence              166777766665555542   23445667888998877665443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.4e-05  Score=71.61  Aligned_cols=197  Identities=14%  Similarity=0.136  Sum_probs=127.0

Q ss_pred             EEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCc-eeEEEEeccCCEEEEEecCCCCCC-eEEEEECCCc---
Q 018248           13 ALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGG-TQLVSMLFRSNIICLVNSGPHQSN-KVMIWDDHEN---   86 (359)
Q Consensus        13 ~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~---   86 (359)
                      +|++.+..++.|+ +|.|.+.+-.   ......+. ++... +..+......+.++.++.+...+. .++||+++.-   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc---ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            4678899999999 9998888754   22224443 34444 444444444456666664321122 6999997542   


Q ss_pred             ---cEE---eeec-----cCcceeEEEEecceeEEE---ecCeEEEEEc----ccceeeeeEeccCCCceeeeeecCCCc
Q 018248           87 ---RYL---GELS-----FRSEVKNVRLRRDRIVVV---LNQKVYVYNF----TDLKLVDQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        87 ---~~~---~~~~-----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
                         +++   +.+.     .+.++.+++.+.+-+.++   .+|.|..+.-    ..+...........+++.+++..++..
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence               233   2222     246788899998877776   8999988853    122222333345678889999888887


Q ss_pred             cEEEecCCCCeeEEEEecCCee--eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          149 MVMACPGLLKGQVRVEDYGTKK--SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                      .+++++   ...|.++...++.  ...+..|...++|..+++....+++++...  +.+|+....++-..+.
T Consensus       186 ~lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  186 VLFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE  252 (933)
T ss_pred             eEEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence            544442   4567887777766  555777888999999987666566666554  8999976555555555

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.60  E-value=7.1e-05  Score=66.22  Aligned_cols=185  Identities=12%  Similarity=0.069  Sum_probs=109.3

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe-eEEEEec-CCeeeEEeecccccccEEEEccC
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG-QVRVEDY-GTKKSKYITAHASRIASIAMTLD  189 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~-~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~  189 (359)
                      ..+.+.+.|..+.+...++.....+ ..++++++++..++.+..++.+ .+..-+. +......+..  ..+  -++.++
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~i--ea~vkd  287 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARI--EEAVKA  287 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--HHH--HHhhhC
Confidence            4567778888887777777665533 4578888887644433112222 1111111 1111111110  001  133457


Q ss_pred             CcEEEEEeCCCCeEEEEEcCC-----CcEEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCCCCCCCCCc
Q 018248          190 GRFVATASSKGTLIRVFNTMD-----GSLLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDSGSPGTSK  263 (359)
Q Consensus       190 ~~~l~~~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~  263 (359)
                      |++...+  ++. |.+.|.++     .+.+..+..   ......+.+||||+++++++ .+.+|.|.|+.+.+..-    
T Consensus       288 GK~~~V~--gn~-V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~----  357 (635)
T PRK02888        288 GKFKTIG--GSK-VPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF----  357 (635)
T ss_pred             CCEEEEC--CCE-EEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh----
Confidence            8876653  556 99999988     456666664   35778999999999887766 58899999999866310    


Q ss_pred             cccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          264 LHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                      ...+.+-..          ..++.++-.++. -.+|.++|+...+.-.|..|..|+++.
T Consensus       358 ----------------~~~~~~~~~----------vvaevevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 ----------------DGKIKPRDA----------VVAEPELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ----------------hccCCccce----------EEEeeccCCCcc-eEEECCCCCEEEeEeecceeEEEehHH
Confidence                            000000000          011122222333 468999998888888899999999876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=4.6e-08  Score=87.15  Aligned_cols=210  Identities=12%  Similarity=0.114  Sum_probs=144.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...-+|++|+-+.++|++|+ .|.|++|++.++.....  .. +|...++.+.-+-++...++.+...  ..-..+|+
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s--~n-cH~SavT~vePs~dgs~~Ltsss~S--~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES--VN-CHQSAVTLVEPSVDGSTQLTSSSSS--SPLSALWD 1173 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc--cc-ccccccccccccCCcceeeeecccc--CchHHHhc
Confidence            4667889999999999999999 99999999998876633  33 7999999999888888887777553  24678898


Q ss_pred             CCC-ccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec----cCCCceeeeeecCCCccEEEec
Q 018248           83 DHE-NRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET----VVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        83 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ... +...+.+.   .-.++.|+...+.-+   ......+||++++.++.++-.    ....-++..|+|+.+   |+. 
T Consensus      1174 ~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~---LIl- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT---LIL- 1246 (1516)
T ss_pred             cccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc---eEe-
Confidence            654 44444443   334677776543322   556789999999887766321    112235678888876   333 


Q ss_pred             CCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          155 GLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       155 g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                        .||  .+|+.+. ..++.|...... ..-.|+|.|..++.-      -.|||+++.+.++....-    .-..+.|+.
T Consensus      1247 --ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~L----dqc~VtFNs 1311 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPSL----DQCAVTFNS 1311 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEee------chhhhhHHHHHHhcCccc----cceEEEecc
Confidence              366  3477765 334444433322 233589999987653      368999999988777641    336788888


Q ss_pred             CCCEEEE
Q 018248          234 NAQWLAA  240 (359)
Q Consensus       234 ~~~~l~~  240 (359)
                      .|..+..
T Consensus      1312 tG~VmYa 1318 (1516)
T KOG1832|consen 1312 TGDVMYA 1318 (1516)
T ss_pred             Cccchhh
Confidence            8887654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=4.1e-07  Score=72.47  Aligned_cols=138  Identities=11%  Similarity=0.145  Sum_probs=99.1

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe------eeEEeecccccccEEE
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK------KSKYITAHASRIASIA  185 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~------~~~~~~~~~~~i~~~~  185 (359)
                      .+..|-+-|++++-. +.+. ....|....|...++  ++.. |..+|.|...+.+.+      +... --|...|+++.
T Consensus       232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n--Lv~~-GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq  305 (425)
T KOG2695|consen  232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN--LVFN-GCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQ  305 (425)
T ss_pred             ccceeEEEEeecccc-cccc-cchhHHHHHhcccCC--eeEe-cccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhh
Confidence            566777788776633 2333 345555566655443  3444 888999988555432      2233 34888999998


Q ss_pred             Ecc-CCcEEEEEeCCCCeEEEEEcCCCcE---EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          186 MTL-DGRFVATASSKGTLIRVFNTMDGSL---LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       186 ~s~-~~~~l~~~~~dg~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .-. ++++|++.+.+|. |++||.+.-++   +.++++|.....-.-+...+....++++++|...|||.++.+.
T Consensus       306 ~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            776 7889999999999 99999987776   8888885544444455566777889999999999999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.57  E-value=0.00026  Score=59.63  Aligned_cols=173  Identities=11%  Similarity=0.161  Sum_probs=105.9

Q ss_pred             CeEEEEECCCccEEeeec--cCcceeEEEE---ecc----eeEEE------------ec-CeEEEEEcccc----eeeee
Q 018248           76 NKVMIWDDHENRYLGELS--FRSEVKNVRL---RRD----RIVVV------------LN-QKVYVYNFTDL----KLVDQ  129 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~---~~~----~~~~~------------~d-~~i~i~d~~~~----~~~~~  129 (359)
                      ..|++.|..+.+.+..+.  ....+.+++.   ..+    ..+++            .. |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468899988888887776  4455555543   321    34444            12 89999999773    22222


Q ss_pred             E--eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248          130 I--ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVF  206 (359)
Q Consensus       130 ~--~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw  206 (359)
                      +  ....+++.  ++.+-++. ++++.   .+.|.++...... +.....+..++...+....++++++|..... +.++
T Consensus        82 i~~~~~~g~V~--ai~~~~~~-lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~  154 (321)
T PF03178_consen   82 IHSTEVKGPVT--AICSFNGR-LVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLL  154 (321)
T ss_dssp             EEEEEESS-EE--EEEEETTE-EEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEE
T ss_pred             EEEEeecCcce--EhhhhCCE-EEEee---cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEE
Confidence            2  12344444  44444444 44443   4688886665554 5554445454555555556779999998888 8887


Q ss_pred             EcCC-CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          207 NTMD-GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       207 d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      .... ...+..+.....+..++++.+-++++.++.+..+|.+.++.....
T Consensus       155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            5543 343444444334567899999877779999999999999999753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.55  E-value=7.5e-06  Score=70.43  Aligned_cols=76  Identities=14%  Similarity=0.267  Sum_probs=64.1

Q ss_pred             cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       176 ~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      .....+.+++++|+...|+.|+.||. |.+||...+..... +   ..-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46778999999999999999999999 99999866643322 2   2346789999999999999999999999999765


Q ss_pred             C
Q 018248          256 S  256 (359)
Q Consensus       256 ~  256 (359)
                      .
T Consensus       332 p  332 (545)
T PF11768_consen  332 P  332 (545)
T ss_pred             c
Confidence            4

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=0.00038  Score=57.37  Aligned_cols=221  Identities=12%  Similarity=0.088  Sum_probs=126.3

Q ss_pred             ccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEE-EEecceeEEEecCeEEEEEcccceeeeeEecc-----
Q 018248           60 FRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNV-RLRRDRIVVVLNQKVYVYNFTDLKLVDQIETV-----  133 (359)
Q Consensus        60 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----  133 (359)
                      +..+.++++.-   ..+.|.-|+..+++.. .+..++.+.++ .....+.+++.+..+.+++..++..+..+...     
T Consensus        34 ~~~~~L~w~DI---~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~  109 (307)
T COG3386          34 PDRGALLWVDI---LGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLP  109 (307)
T ss_pred             CCCCEEEEEeC---CCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCC
Confidence            34454555544   3588888887655433 33434444444 45556677778888888887655553333211     


Q ss_pred             CCCceeeeeecCCCccEEEecC---------CCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEE
Q 018248          134 VNPTGLCDVSQNAGPMVMACPG---------LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIR  204 (359)
Q Consensus       134 ~~~~~~~~~~~~~~~~~l~~~g---------~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~  204 (359)
                      ....+...+.|++. +++...+         ..-|.++..+..+...+.+..+-..-+.++||||++.|..+......|.
T Consensus       110 ~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         110 LNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             cCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence            12234456666654 2222222         1124344444345666666666667789999999998887766533277


Q ss_pred             EEEcCC--Cc---EEEEeecCCCCcceEEEEecCCCCEEEEEcCCC-cEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248          205 VFNTMD--GS---LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG-TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS  278 (359)
Q Consensus       205 iwd~~~--~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
                      -|++..  +.   ....+......+..-.++...+|.+.+++...| .|.+|+.+ ++.                     
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l---------------------  246 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL---------------------  246 (307)
T ss_pred             EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE---------------------
Confidence            776642  11   111111111345566777777887775544444 78888877 441                     


Q ss_pred             ceeeeeEeeeecceEEecccceeEEeecCCcEEEeee-cccCCEEEEEecC
Q 018248          279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF-GRQNNTIVIVGLD  328 (359)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d  328 (359)
                                           ...+++|...+++++| .|+.+.|++.+..
T Consensus       247 ---------------------~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         247 ---------------------LGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             ---------------------EEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence                                 2235566567778888 4566777776663

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.50  E-value=0.00044  Score=57.81  Aligned_cols=219  Identities=11%  Similarity=-0.008  Sum_probs=107.3

Q ss_pred             EEccCCCEEEEec--CCc--eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248           13 ALNQDHGCFATGT--ETG--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus        13 ~~s~~g~~l~~~~--d~~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      +|.+||+.|+.++  ++.  +.+.|+++++.......   .........+++..+.++.+.    ....|+-.|+.+.+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~Yv~----~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG---PGDNTFGGFLSPDDRALYYVK----NGRSLRRVDLDTLEE  114 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S---S-B-TTT-EE-TTSSEEEEEE----TTTEEEEEETTT--E
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC---CCCCccceEEecCCCeEEEEE----CCCeEEEEECCcCcE
Confidence            5788998876665  555  55666666544332221   112222355667778877776    347899999999887


Q ss_pred             Eeeec-cCcceeEEEE--ecceeEEE-------------------------ecCeEEEEEcccceeeeeEeccCCCceee
Q 018248           89 LGELS-FRSEVKNVRL--RRDRIVVV-------------------------LNQKVYVYNFTDLKLVDQIETVVNPTGLC  140 (359)
Q Consensus        89 ~~~~~-~~~~v~~~~~--~~~~~~~~-------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (359)
                      ...+. .+.-+-...|  +.++..++                         ....|.-.|+.+|+....+. ......-+
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~  193 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV  193 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence            66666 3333333444  34555554                         12467777888887655554 34455677


Q ss_pred             eeecCCCccEEEe-cCCCCee-EEEEec--CCeeeEEeecccc--cccEEEEccCCcEEEEEeC-----CCCeEEEEEcC
Q 018248          141 DVSQNAGPMVMAC-PGLLKGQ-VRVEDY--GTKKSKYITAHAS--RIASIAMTLDGRFVATASS-----KGTLIRVFNTM  209 (359)
Q Consensus       141 ~~~~~~~~~~l~~-~g~~d~~-v~~~~~--~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~-----dg~~i~iwd~~  209 (359)
                      .++|.....+..| -|..+.. -+||..  ++...+.+..+..  .+.-=-|.|||..|..-+.     +.. |.-+|..
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d~~  272 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYDPD  272 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-TT
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeCCC
Confidence            8888776654443 1222321 255544  4444554443322  2333468899986654332     334 6677888


Q ss_pred             CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC
Q 018248          210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK  244 (359)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  244 (359)
                      +++.......    .....+--++||++++-=+.|
T Consensus       273 t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  273 TGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence            8765433322    234566678899988754443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.49  E-value=1.5e-06  Score=76.33  Aligned_cols=198  Identities=18%  Similarity=0.170  Sum_probs=135.0

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC-ccEEeeec--cCcceeEEEEecce---eEEE--ecCeEEEEEc
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE-NRYLGELS--FRSEVKNVRLRRDR---IVVV--LNQKVYVYNF  121 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~--~~~~v~~~~~~~~~---~~~~--~d~~i~i~d~  121 (359)
                      .+++..+.+.|.+..+++++     ..-+.+.|+.. +.+.+-+.  .+-.|-.+.|+|..   ..++  ....-.+|++
T Consensus        24 ~~~~~a~si~p~grdi~lAs-----r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl   98 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLAS-----RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL   98 (1081)
T ss_pred             cCcccceeeccccchhhhhh-----hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence            57778888889998888877     24466666544 33333333  23456777887753   3444  5666778888


Q ss_pred             c---cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc-CCcEEEE
Q 018248          122 T---DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL-DGRFVAT  195 (359)
Q Consensus       122 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~  195 (359)
                      .   +......+.+|...+..+.|.+.... ++++ ++.|-.+..|+.+.  .++..+..-......++|+- ++..+|+
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q~pd-Vlat-csvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLAT-CSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCCCCc-ceee-ccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            3   23344455677777777777776654 3444 67888999999876  44555555566778899986 4445544


Q ss_pred             EeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          196 ASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       196 ~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                       +.... |.+||++.| .++..+++  |...|+.++|.. -...+.+.+.||+|++||.+.....
T Consensus       177 -shg~~-i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  177 -SHGND-IFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             -ccCCc-eEEEeccCCCcceEEecc--cceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence             44445 999999876 46677776  777888888864 2346778899999999999876644

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=7e-06  Score=72.85  Aligned_cols=143  Identities=15%  Similarity=0.170  Sum_probs=102.5

Q ss_pred             EEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          151 MACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                      ++. |..+|.|++...++.+ .....|...      ..+|.++++|+.||+ |.|..+-+.+...++.-   ..++.+++
T Consensus        52 ~~~-GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~df---~rpiksia  119 (846)
T KOG2066|consen   52 FAL-GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYDF---KRPIKSIA  119 (846)
T ss_pred             eee-ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEec---CCcceeEE
Confidence            555 7789999998888776 555555444      668999999999999 99999988887776663   36899999


Q ss_pred             ecCC-----CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248          231 FSSN-----AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL  305 (359)
Q Consensus       231 ~s~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (359)
                      ++|+     .+.+++|+..| +.++.-+--+..                                        .-..+.-
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----------------------------------------~~v~l~~  158 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----------------------------------------DSVVLSE  158 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------------------------cceeeec
Confidence            9998     56788999888 766644322211                                        0001222


Q ss_pred             cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeecc
Q 018248          306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYK  351 (359)
Q Consensus       306 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~  351 (359)
                      ..|.|.++.|.  |++||-++.+| |+||+...  +..+..+++..
T Consensus       159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~--~~~l~~i~~p~  199 (846)
T KOG2066|consen  159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT--RQRLTNIPPPS  199 (846)
T ss_pred             CccceEEEEec--CcEEEEecCCC-cEEEeccc--cceeeccCCCC
Confidence            35889999986  46999999998 89998766  33444444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=1.1e-05  Score=72.25  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=89.7

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceee
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLV  127 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~  127 (359)
                      +..++.+|+|....+++++-+....|.|.||- ++|++......+-.+.+++|+|....++   .-|.+.+|...+.+.-
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            33456688888888877665443568999986 8888877777777788899999998888   7899999998777766


Q ss_pred             eeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC
Q 018248          128 DQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG  167 (359)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~  167 (359)
                      ....+|..++..+.|+++|..  +.+ +..-|.+.+|..+
T Consensus        95 tv~~th~a~i~~l~wS~~G~~--l~t-~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTV--LMT-LDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCe--EEE-cCCCceeEEEEee
Confidence            666789999999999999975  555 6677888888766

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.44  E-value=0.00014  Score=62.17  Aligned_cols=220  Identities=12%  Similarity=0.086  Sum_probs=116.6

Q ss_pred             ccCCCEEEEec----------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248           15 NQDHGCFATGT----------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus        15 s~~g~~l~~~~----------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      |||+++++...          .+.+.|||+++++.......    ...+....|+|+++.++++.     ++.|.+++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~-----~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP----PPKLQDAKWSPDGKYIAFVR-----DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E----ETTBSEEEE-SSSTEEEEEE-----TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC----ccccccceeecCCCeeEEEe-----cCceEEEECC
Confidence            68999988743          35689999998544322111    46788899999999999997     5899999987


Q ss_pred             CccEEeeeccC------------------cceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248           85 ENRYLGELSFR------------------SEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV  142 (359)
Q Consensus        85 ~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (359)
                      +++..+.-...                  +.-..+-|+||++.++    .+..|..+.+........   .......+.+
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~Y  148 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRY  148 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE-
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCccccccc
Confidence            77443322111                  1235688999998888    566666655421100000   0000111111


Q ss_pred             ecCCCccEEEecCCCCeeEEE--EecCCeeeEEe------ecccccccEEEEccCCcEEEE--EeCCCCe--EEEEEcCC
Q 018248          143 SQNAGPMVMACPGLLKGQVRV--EDYGTKKSKYI------TAHASRIASIAMTLDGRFVAT--ASSKGTL--IRVFNTMD  210 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~--~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~--~~~dg~~--i~iwd~~~  210 (359)
                      -.         +|..+..+.+  ++..+.....+      ......+..+.|.++++.|+.  .+.+...  +.++|..+
T Consensus       149 Pk---------~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t  219 (353)
T PF00930_consen  149 PK---------AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST  219 (353)
T ss_dssp             -B---------TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred             CC---------CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence            11         1323333443  44444333222      123456889999999984433  3333321  66778877


Q ss_pred             CcEEEEeecCCCCcce---EEEEec-CCCC-EEEEEcCCCcEEEEEccCCC
Q 018248          211 GSLLQEMRRGAERAEI---YSLAFS-SNAQ-WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i---~~~~~s-~~~~-~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +.....+... ..+.|   ....|. +++. +|.....+|.-+|+-++...
T Consensus       220 g~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~  269 (353)
T PF00930_consen  220 GETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG  269 (353)
T ss_dssp             TTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred             CceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence            7654333321 22333   244544 5554 55555577776666665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=1e-05  Score=72.92  Aligned_cols=178  Identities=11%  Similarity=0.223  Sum_probs=123.4

Q ss_pred             CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-c
Q 018248           17 DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-F   94 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~   94 (359)
                      ++..++.|+ ...+..+|+.+.++.....+.   ..++..++  .++.. ++++.   ..|+|.+-|..+.+.++++. |
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR--~Nnr~-lf~G~---t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMR--YNNRN-LFCGD---TRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeecc---CCceEEEE--ecCcE-EEeec---ccceEEeecCCcCceeeeeecc
Confidence            445666676 777888888876665444443   33455444  33333 33433   46999999999999999999 9


Q ss_pred             CcceeEEEEecceeEEE----------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           95 RSEVKNVRLRRDRIVVV----------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      .+.|.++...-+-.+-+          .|.-|+|||++..+.+..+.-+.++ ..+.|.|.-...+.++  +..|...+-
T Consensus       217 s~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~v  293 (1118)
T KOG1275|consen  217 SGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFV  293 (1118)
T ss_pred             ccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeec
Confidence            99998887754432222          6788999999988887777666555 5677888765544443  246777773


Q ss_pred             e---cCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          165 D---YGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       165 ~---~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      +   ....  .+..+......+..+.+|+++..+|.|..+|. |.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence            3   1112  23333444556999999999999999999999 99997

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.43  E-value=0.00043  Score=58.33  Aligned_cols=214  Identities=12%  Similarity=0.207  Sum_probs=120.9

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEE-EeccC-----CEEEEEecCCC-------CCCeEEEEECCCc-------
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVS-MLFRS-----NIICLVNSGPH-------QSNKVMIWDDHEN-------   86 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~-----~~~~~~~~~~~-------~d~~i~iwd~~~~-------   86 (359)
                      ..|++.|..+.+......+.  ....+.+++ +....     ...++++.+..       ..|.|.++++...       
T Consensus         2 s~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l   79 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL   79 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred             cEEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence            35788888877766666664  222333333 22221     33333333211       1289999998884       


Q ss_pred             cEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE--
Q 018248           87 RYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV--  163 (359)
Q Consensus        87 ~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~--  163 (359)
                      +.+.....+++|.+++--. +.+++ .++.|.+|++...+.+........+....++...++.  +++ |.....+.+  
T Consensus        80 ~~i~~~~~~g~V~ai~~~~-~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~--I~v-gD~~~sv~~~~  155 (321)
T PF03178_consen   80 KLIHSTEVKGPVTAICSFN-GRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNY--ILV-GDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEEEESS-EEEEEEET-TEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTE--EEE-EESSSSEEEEE
T ss_pred             EEEEEEeecCcceEhhhhC-CEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccE--EEE-EEcccCEEEEE
Confidence            2233334788999998774 44555 9999999999776622222223333455666666654  443 333344554  


Q ss_pred             EecCCeeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC-------Cc----EEEEeecCCCCcceEEE-
Q 018248          164 EDYGTKKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMD-------GS----LLQEMRRGAERAEIYSL-  229 (359)
Q Consensus       164 ~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~-------~~----~~~~~~~~~~~~~i~~~-  229 (359)
                      |+.....+..+..  ....++++.|-++++.++.+..+|. +.++....       +.    ....+.   ....|+++ 
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~  231 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFR  231 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEE
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEE---CCCccceEE
Confidence            6765554444432  3456788888867778999999999 99988752       22    223333   23567777 


Q ss_pred             --EecCC--CC------EEEEEcCCCcEEEE
Q 018248          230 --AFSSN--AQ------WLAASSDKGTVHVF  250 (359)
Q Consensus       230 --~~s~~--~~------~l~~~~~dg~i~iw  250 (359)
                        .+.|.  +.      .++.++.+|.|.+.
T Consensus       232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence              55552  22      47778889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.43  E-value=7.6e-05  Score=66.03  Aligned_cols=167  Identities=10%  Similarity=0.064  Sum_probs=106.6

Q ss_pred             CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-e------cCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           74 QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-L------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      ..+.+.+.|.++.+...++........+.++|++.+++ .      ..++...+..+...+..+...    ...++.+++
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~vkdG  288 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEAVKAG  288 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHhhhCC
Confidence            45778888888888888877666778889999998876 1      123333332222111111110    011334455


Q ss_pred             CccEEEecCCCCeeEEEEecCC------eeeEEeecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcE------
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT------KKSKYITAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSL------  213 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~------  213 (359)
                      +..++     .++.|.+.+...      ..+..+. -......+.++|||+++++++. +.. |.|.|+.+.+.      
T Consensus       289 K~~~V-----~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        289 KFKTI-----GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             CEEEE-----CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccC
Confidence            54332     145677744433      2333343 3456689999999998877764 777 99999987552      


Q ss_pred             ------EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          214 ------LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       214 ------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                            ..+.+.+   ......+|.++|....+---|..|-.||+..
T Consensus       362 ~~~~~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                  3444432   2446788999999888888999999999987

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=1e-05  Score=71.89  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=92.7

Q ss_pred             cceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEE
Q 018248           96 SEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKY  173 (359)
Q Consensus        96 ~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~  173 (359)
                      ..+.+.+++..-..+. .+|.|++++.. +.. .+...|...        +-++.++++ ++.||+|.|-.. +.+....
T Consensus        40 D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~--------~~~Gey~as-CS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS--------ILEGEYVAS-CSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc--------ccCCceEEE-ecCCCcEEEeeccCCcccee
Confidence            4455555554333333 78899999863 333 222222221        444556887 889999998433 3333333


Q ss_pred             eecccccccEEEEccC-----CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          174 ITAHASRIASIAMTLD-----GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       174 ~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      + .-..++.+++++|+     .+.+++|+..|  +.++.-+-.........+...++|.++.|  .|.++|-++++| |+
T Consensus       109 ~-df~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~  182 (846)
T KOG2066|consen  109 Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VK  182 (846)
T ss_pred             E-ecCCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cE
Confidence            3 34578999999998     45788888777  66665332111112222335689999999  588999999888 99


Q ss_pred             EEEccCCCC
Q 018248          249 VFGLKVDSG  257 (359)
Q Consensus       249 iw~~~~~~~  257 (359)
                      |||+.+++.
T Consensus       183 vyd~~~~~~  191 (846)
T KOG2066|consen  183 VYDTPTRQR  191 (846)
T ss_pred             EEeccccce
Confidence            999998774

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=0.0001  Score=66.32  Aligned_cols=190  Identities=11%  Similarity=0.200  Sum_probs=117.5

Q ss_pred             eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcc-eeEEEEecceeEEE---ec-C----eEEEEEccc
Q 018248           54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSE-VKNVRLRRDRIVVV---LN-Q----KVYVYNFTD  123 (359)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~---~d-~----~i~i~d~~~  123 (359)
                      ..-++++++..+++.+    .+|.|.+.+ ..-+.++.++ ++.. |..+....+..+++   .| +    .+++|+++.
T Consensus        27 ~isc~~s~~~~vvigt----~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGT----ADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             ceeEEcCCCceEEEee----ccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            3445666677777777    789998887 4555556666 5544 44444444445555   22 2    699999843


Q ss_pred             c------eee--eeEec-----cCCCceeeeeecCCCccEEEecCCCCeeEEEEec---CCeeeEE--eecccccccEEE
Q 018248          124 L------KLV--DQIET-----VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY---GTKKSKY--ITAHASRIASIA  185 (359)
Q Consensus       124 ~------~~~--~~~~~-----~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~---~~~~~~~--~~~~~~~i~~~~  185 (359)
                      .      +++  ..+.+     ...++.+++++.+-  ..+|+ |-.+|.|..+.-   +.+-.+.  ......+|+.++
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence            2      233  12222     24556777777773  34666 888999887332   2222222  233467999999


Q ss_pred             EccCCcE-EEEEeCCCCeEEEEEcCCCcEEEE-eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          186 MTLDGRF-VATASSKGTLIRVFNTMDGSLLQE-MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       186 ~s~~~~~-l~~~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +..+++. +.++.. .. |.+|.+....+... +..  +.....|..+++....+++++.. .+.+|+.+..+
T Consensus       179 ~~~d~~s~lFv~Tt-~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~  246 (933)
T KOG2114|consen  179 LRSDGKSVLFVATT-EQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRG  246 (933)
T ss_pred             EecCCceeEEEEec-ce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEecCc-eEEEEcCCCcc
Confidence            9998886 334433 34 99999874442323 332  66788999998766556666544 49999988654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.37  E-value=7.8e-06  Score=64.53  Aligned_cols=159  Identities=11%  Similarity=0.270  Sum_probs=103.4

Q ss_pred             cCcceeEEEEecceeEEE--ecCeEEEEEcccce---eeeeEeccC-----CCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248           94 FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLK---LVDQIETVV-----NPTGLCDVSQNAGPMVMACPGLLKGQVRV  163 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~d~~v~~  163 (359)
                      |+..|.++.++.|...++  .|=.|.+|++.-..   .+..++++.     .-++...|+|.....+..+  +..|.|++
T Consensus       171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl  248 (460)
T COG5170         171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKL  248 (460)
T ss_pred             ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEe
Confidence            778899999999987777  77789999984321   122222221     2355677888766544443  35899999


Q ss_pred             EecCCee-----eE------------EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCC----
Q 018248          164 EDYGTKK-----SK------------YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGA----  221 (359)
Q Consensus       164 ~~~~~~~-----~~------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~----  221 (359)
                      .+.+...     .+            -+.+-...|..+.|+++|+++++-+.- + |+|||.+.. .++.++.-+.    
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHH
Confidence            5544211     11            112234578899999999999876554 4 999998764 4555553211    


Q ss_pred             ------CCcce---EEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          222 ------ERAEI---YSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       222 ------~~~~i---~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                            ....|   ..+.||.|.+.+.+|+.....-|+-+.+..
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg  370 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSG  370 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCC
Confidence                  01222   357889898999999988888888755543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.34  E-value=7.9e-05  Score=64.39  Aligned_cols=184  Identities=13%  Similarity=0.085  Sum_probs=116.8

Q ss_pred             CCceEEEEEccCCCEEEEec---C--CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            6 PITIHHLALNQDHGCFATGT---E--TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~---d--~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      ...+..-+|+|++..++.-.   .  ..+.++++++++......+    .+....-+|+|+++.++++.... ..-.|.+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~----~g~~~~P~fspDG~~l~f~~~rd-g~~~iy~  266 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF----NGNNGAPAFSPDGSKLAFSSSRD-GSPDIYL  266 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----CCccCCccCCCCCCEEEEEECCC-CCccEEE
Confidence            34566778999999876654   2  3488999998877665665    34445568999999999988754 4556777


Q ss_pred             EECCCccEEeeec-cCcceeEEEEecceeEEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      +|+..++..+ +. ..+.-..-.|+|+|+.++    ..|  .|.+++.+.++. ..+......-....++|+++.+.+..
T Consensus       267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            8877776433 55 333334677999999888    333  577777755544 33333333333678899998755443


Q ss_pred             cCCCCee--EEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCC
Q 018248          154 PGLLKGQ--VRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSK  199 (359)
Q Consensus       154 ~g~~d~~--v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  199 (359)
                        ..+|.  |.+.+..... .+.+ .+........|.|+++.+...+..
T Consensus       345 --~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         345 --SSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             --ccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence              23454  3333333322 3333 344455567788898877655443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.30  E-value=0.0024  Score=57.11  Aligned_cols=109  Identities=10%  Similarity=0.085  Sum_probs=65.8

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccC---CCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEECCCccEEeeec
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRN---PRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDDHENRYLGELS   93 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~   93 (359)
                      ..+.+++ ++.+.-.|..+++.+........   +...+......... ..+++.+    .++.|.-+|.++|+.+..+.
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~----~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT----FDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec----CCCeEEEEECCCCCEeeeec
Confidence            3454555 89999999999888876655300   00000000011122 4555544    57999999999999998877


Q ss_pred             cCcc------ee-EEEEecceeEEE-e----------cCeEEEEEcccceeeeeEec
Q 018248           94 FRSE------VK-NVRLRRDRIVVV-L----------NQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        94 ~~~~------v~-~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~  132 (359)
                      ....      +. ...+. ++.+++ .          ++.+..+|..+++.+..++.
T Consensus       138 ~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            3332      11 12222 244444 1          57899999999998888765

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.30  E-value=0.00054  Score=58.54  Aligned_cols=168  Identities=9%  Similarity=0.091  Sum_probs=90.4

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEecc-----------------CC
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETV-----------------VN  135 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~-----------------~~  135 (359)
                      .+.+.++|+.+++..........+....|+|+|..++  .++.|++++..+++..+.-...                 -.
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~  101 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD  101 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence            4778999999976665554567889999999999988  9999999998766443222111                 11


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec--ccc---cccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA--HAS---RIASIAMTLDGRFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~--~~~---~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~  210 (359)
                      .-..+.|+|+++.  ||+       +++++..-+.......  ...   .+..+.+-.-|.-....    . +.|+|+.+
T Consensus       102 ~~~~~~WSpd~~~--la~-------~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v----~-l~v~~~~~  167 (353)
T PF00930_consen  102 RRSAVWWSPDSKY--LAF-------LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV----S-LFVVDLAS  167 (353)
T ss_dssp             SSBSEEE-TTSSE--EEE-------EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE----E-EEEEESSS
T ss_pred             cccceEECCCCCE--EEE-------EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce----E-EEEEECCC
Confidence            2245678888876  433       2222222222221111  111   23344442222211111    2 77789888


Q ss_pred             CcEEE-Eeec--CCCCcceEEEEecCCCCEEEEE--cCCC---cEEEEEccCCC
Q 018248          211 GSLLQ-EMRR--GAERAEIYSLAFSSNAQWLAAS--SDKG---TVHVFGLKVDS  256 (359)
Q Consensus       211 ~~~~~-~~~~--~~~~~~i~~~~~s~~~~~l~~~--~~dg---~i~iw~~~~~~  256 (359)
                      ++... ....  ......+..+.|+++++.|+..  +.+.   .+.+.|..++.
T Consensus       168 ~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~  221 (353)
T PF00930_consen  168 GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE  221 (353)
T ss_dssp             TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred             CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc
Confidence            76532 2220  1134578999999999844332  2222   36666776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.0016  Score=56.16  Aligned_cols=218  Identities=17%  Similarity=0.127  Sum_probs=145.2

Q ss_pred             EEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248           10 HHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      ..++.++++..+....  ++.|.+.|.++.........  |.  ....+++.++++.+.++..+. .++.+.+.|..+++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNK  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEeccc-CCceEEEEeCCCCe
Confidence            4678888888664444  78899999776544433333  22  556678888888877776542 26999999999999


Q ss_pred             EEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeee-----eEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           88 YLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVD-----QIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      .+........-..+++.|++..+.    .++.|.+.|........     .+..... ...+.+.+++...+++..++.+
T Consensus       152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCC
Confidence            888865333338999999998665    58999999976555442     1222222 2458899999988887754444


Q ss_pred             eeEEEEecCCeeeEEe--ecccccccEEEEccCCcEEEEEeCC-CCeEEEEEcCCCcEEEEeecCCC-CcceEEEEecCC
Q 018248          159 GQVRVEDYGTKKSKYI--TAHASRIASIAMTLDGRFVATASSK-GTLIRVFNTMDGSLLQEMRRGAE-RAEIYSLAFSSN  234 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d-g~~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~~  234 (359)
                      +.+..-+.....+...  .........+.++|+|+++.+.... +. +.+-|..+......+..+.. ...+..+++.+.
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceeccceee
Confidence            6777644444333332  1111146778999999998888544 66 99999888887776654322 123556666554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=1.3e-05  Score=70.20  Aligned_cols=121  Identities=17%  Similarity=0.231  Sum_probs=90.2

Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP  259 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  259 (359)
                      .+.--+++..+++++.|+.-|. +++|+...++....-..+ ..+.+.....|++..++|.|+..|.|.++.+....+.+
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             eEEEEEeecCCceEEEecccce-EEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3444456678899999999999 999997666654433322 33567777889999999999999999999998855332


Q ss_pred             CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                             +.        ++.+.     -+-|...|++++|++|+..+++|..-|+|..-.++.
T Consensus       113 -----------------------~~--------~~t~~-----d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 -----------------------LD--------YVTPC-----DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             -----------------------ce--------eeccc-----cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                                   11        11111     011456899999999999999999999999988887

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=0.00013  Score=59.96  Aligned_cols=238  Identities=10%  Similarity=0.031  Sum_probs=128.1

Q ss_pred             CCCCceEEEEEccCCC-EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHG-CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .+...|..++|||..+ ++..++ ++.|+|.|+++........   .| ..++.++|.-+....+.++.   .+|.|.+|
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~IYaGl---~nG~Vlvy  263 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHVIYAGL---QNGMVLVY  263 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcceeEEec---cCceEEEE
Confidence            3567799999999887 677788 9999999999755443333   23 77888899888876666665   56999999


Q ss_pred             ECCCccE-Eeeec---cCcceeEEEEe------cceeEEE-ecCeEEEEEccc--ceeeeeEecc-CCCceeeeeecCCC
Q 018248           82 DDHENRY-LGELS---FRSEVKNVRLR------RDRIVVV-LNQKVYVYNFTD--LKLVDQIETV-VNPTGLCDVSQNAG  147 (359)
Q Consensus        82 d~~~~~~-~~~~~---~~~~v~~~~~~------~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~~  147 (359)
                      |++..+- +..+.   ...+|..++.-      +.+.+++ .--.+..|++.-  +.....++.. .+....++..+..+
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN  343 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence            9876432 22222   12344443322      2233333 333444555421  1111112111 12111222222223


Q ss_pred             ccEEEecCCCC-----ee--EEEEecCCeeeEEe-ecccc-c------ccEEEEccCCcEEEEE-eCCCCeEEEEEcCCC
Q 018248          148 PMVMACPGLLK-----GQ--VRVEDYGTKKSKYI-TAHAS-R------IASIAMTLDGRFVATA-SSKGTLIRVFNTMDG  211 (359)
Q Consensus       148 ~~~l~~~g~~d-----~~--v~~~~~~~~~~~~~-~~~~~-~------i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~  211 (359)
                      ..++.+ -+.-     ..  .+++..++.++... ..+.+ .      -..+.-.++.++++.- ..... +.+||..++
T Consensus       344 h~l~ty-Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil~D~~s~  421 (463)
T KOG1645|consen  344 HLLLTY-RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LILQDPHSF  421 (463)
T ss_pred             eEEEEe-cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEEeccchh
Confidence            322221 1100     00  12233333332221 11101 0      1112223455655544 44555 999999999


Q ss_pred             cEEEEeecCCCCcceEEEEecC-C-CCEEEEEcCCCcEEEEEccC
Q 018248          212 SLLQEMRRGAERAEIYSLAFSS-N-AQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~iw~~~~  254 (359)
                      +.++++..   ..+|.+++... + +.+|++-+ |..++||..++
T Consensus       422 evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  422 EVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             heeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            99999985   36888887653 3 34676665 45699987654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.21  E-value=0.0033  Score=55.16  Aligned_cols=243  Identities=12%  Similarity=0.085  Sum_probs=130.3

Q ss_pred             ceEEEEEccCCCEEEEec--CCc----eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-C------
Q 018248            8 TIHHLALNQDHGCFATGT--ETG----FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-Q------   74 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~--d~~----i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~------   74 (359)
                      .+...++||||+++|.+-  .|.    ++++|+++++... ..+.   ......+.|..+++.++....... .      
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            344688999999998764  343    9999999875442 2332   111223889888888877765431 2      


Q ss_pred             CCeEEEEECCCccE--Eeeec--cCcc-eeEEEEecceeEEE------ec-CeEEEEEcccc----eeeeeEeccCCCce
Q 018248           75 SNKVMIWDDHENRY--LGELS--FRSE-VKNVRLRRDRIVVV------LN-QKVYVYNFTDL----KLVDQIETVVNPTG  138 (359)
Q Consensus        75 d~~i~iwd~~~~~~--~~~~~--~~~~-v~~~~~~~~~~~~~------~d-~~i~i~d~~~~----~~~~~~~~~~~~~~  138 (359)
                      ...|+.|.+.+...  ...+.  .... ...+..++++++++      .+ ..+++.++..+    .....+......+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            56688998877632  23333  2233 56788899998877      34 67888888664    23333333232222


Q ss_pred             eeeeecCCCccEEEec-CCCCeeEEEEecCC-e---eeEEeecccccccEEEEccCCcEEEEE-eCCCC-eEEEEEcCCC
Q 018248          139 LCDVSQNAGPMVMACP-GLLKGQVRVEDYGT-K---KSKYITAHASRIASIAMTLDGRFVATA-SSKGT-LIRVFNTMDG  211 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~-g~~d~~v~~~~~~~-~---~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~-~i~iwd~~~~  211 (359)
                      ... ...++.+++.+. +...+.|..-+... .   ....+..+...+.-..+...+.+|+.. ..++. .|+++++..+
T Consensus       281 ~~v-~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  281 YYV-DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEE-EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEE-EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence            222 222444555442 12234444433332 2   122455555533333333444455444 33332 1889998745


Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEE--Ec--CCCcEEEEEccCCC
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAA--SS--DKGTVHVFGLKVDS  256 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~--~dg~i~iw~~~~~~  256 (359)
                      .....+... ..+.|..+...+++..+..  .+  .-+++.-||+.+++
T Consensus       360 ~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  360 KESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             cEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            555555543 3355677776666664432  22  23578888888876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=2.3e-05  Score=70.29  Aligned_cols=115  Identities=16%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             eeeeeecCCCccEEEec-CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248          138 GLCDVSQNAGPMVMACP-GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~-g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~  216 (359)
                      +...|+|....+.+|+- ....|.|.|+..++.+-+... ..-.+++++|+|..-.|+.|=.-|. +.+|...+.+.- +
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~h-t   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTETH-T   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccce-eEEEecCCceee-e
Confidence            45677887766555432 224678888887776544332 1234577999999989999999999 999987655443 3


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .. ..|+.+|..+.|||+|..|+++..-|.|.+|......
T Consensus        96 v~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   96 VV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            33 2388999999999999999999999999999998554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.20  E-value=0.0019  Score=53.20  Aligned_cols=197  Identities=16%  Similarity=0.235  Sum_probs=117.9

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeee-------------ecccCCCCceeEEE--EeccCCEEEEEec
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR-------------DFDRNPRGGTQLVS--MLFRSNIICLVNS   70 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~-------------~~~~~h~~~v~~~~--~~~~~~~~~~~~~   70 (359)
                      ..+|..+...|+-+.|++-+|+.+.+++++........             .+  .....+...+  -...+...+++. 
T Consensus        35 ~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va-  111 (275)
T PF00780_consen   35 LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVA-  111 (275)
T ss_pred             cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc--cccCCeeEEeeccccccceEEEEE-
Confidence            34589999999988888888999999998754433211             11  1233444444  112333334444 


Q ss_pred             CCCCCCeEEEEECCCc-----cEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccC-----------
Q 018248           71 GPHQSNKVMIWDDHEN-----RYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVV-----------  134 (359)
Q Consensus        71 ~~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------  134 (359)
                         ...+|.+|.....     +..+++..+..+.+++|.++...+...+...+.|+.++.....+....           
T Consensus       112 ---~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~  188 (275)
T PF00780_consen  112 ---VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS  188 (275)
T ss_pred             ---ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence               3468888876542     566777788999999999666555578889999998665544332211           


Q ss_pred             -CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          135 -NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       135 -~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                       .+.....+  +.+. +|++   .+..-..-+..+...+  .+.- ...+.++++.  ..+|+..+. +. |.||++.++
T Consensus       189 ~~~~~~~~~--~~~e-~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~  257 (275)
T PF00780_consen  189 SKPLGIFQL--SDNE-FLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETG  257 (275)
T ss_pred             CCceEEEEe--CCce-EEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CE-EEEEECcCC
Confidence             11222222  2223 3443   1322222344454333  2222 3355666663  457776665 45 999999999


Q ss_pred             cEEEEeec
Q 018248          212 SLLQEMRR  219 (359)
Q Consensus       212 ~~~~~~~~  219 (359)
                      +.++.+..
T Consensus       258 ~lvQ~i~~  265 (275)
T PF00780_consen  258 ELVQTIPL  265 (275)
T ss_pred             cEEEEEEC
Confidence            99988874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.20  E-value=0.0022  Score=53.03  Aligned_cols=212  Identities=14%  Similarity=0.079  Sum_probs=125.2

Q ss_pred             EEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           13 ALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        13 ~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      .|.++...|.-..  .+.|.-|+.++++.... ..    ...+......- ....++++     +..+.+++.+++..+.
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~----p~~~~~~~~~d-~~g~Lv~~-----~~g~~~~~~~~~~~~t   99 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PS----PGGFSSGALID-AGGRLIAC-----EHGVRLLDPDTGGKIT   99 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-EC----CCCcccceeec-CCCeEEEE-----ccccEEEeccCCceeE
Confidence            4677777666655  77788888875543322 21    33333333332 33333333     3567777776665533


Q ss_pred             eec------cCcceeEEEEecceeEEE---e-----------cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248           91 ELS------FRSEVKNVRLRRDRIVVV---L-----------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        91 ~~~------~~~~v~~~~~~~~~~~~~---~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      .+.      .....++....|+|.+.+   .           -|.++.+|. .+..++.+..+-...+.++|+|+++.++
T Consensus       100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly  178 (307)
T COG3386         100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEE
Confidence            332      124456788888888777   2           123445553 4555555444344446799999999766


Q ss_pred             EEecCCCCeeEEEEecC---C----e-eeEEeecccccccEEEEccCCcEEEEEeCCC-CeEEEEEcCCCcEEEEeecCC
Q 018248          151 MACPGLLKGQVRVEDYG---T----K-KSKYITAHASRIASIAMTLDGRFVATASSKG-TLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~---~----~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      ++=  +..+.|.-+...   +    + ....+....+..-.++...+|.+-+++-..| . |.+|+.. |+++..+... 
T Consensus       179 ~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~lP-  253 (307)
T COG3386         179 VAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKLP-  253 (307)
T ss_pred             EEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEECC-
Confidence            653  344566654333   1    1 1122233456677788888898776555554 6 9999976 9999888863 


Q ss_pred             CCcceEEEEec-CCCCEEEEEc
Q 018248          222 ERAEIYSLAFS-SNAQWLAASS  242 (359)
Q Consensus       222 ~~~~i~~~~~s-~~~~~l~~~~  242 (359)
                       ...+++++|- |+.+.|...+
T Consensus       254 -~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         254 -VKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             -CCCCccceEeCCCcCEEEEEe
Confidence             2577888885 4555554433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.16  E-value=0.00021  Score=61.84  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                      ....+.+++++|+.+.+++   |+.||.|.+|+...+..... ...-.++.++|+|+|..+++|+..|. +.+||+.-..
T Consensus       258 L~s~v~~ca~sp~E~kLvl---GC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALsp  332 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVL---GCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSP  332 (545)
T ss_pred             cCCcceEEecCcccceEEE---EecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCc
Confidence            4556788999999887444   55899999998876654443 34566789999999999999999999 9999986544


Q ss_pred             E
Q 018248          213 L  213 (359)
Q Consensus       213 ~  213 (359)
                      .
T Consensus       333 i  333 (545)
T PF11768_consen  333 I  333 (545)
T ss_pred             c
Confidence            3

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.15  E-value=0.0041  Score=54.08  Aligned_cols=168  Identities=14%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             eEEEEECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEec--cCCCceee---eeecCCCc
Q 018248           77 KVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIET--VVNPTGLC---DVSQNAGP  148 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~  148 (359)
                      .|.+|+ ..|+.+..+. ..+.+.++.|+.+..+++  .||.+++||+. |+....+..  ....+..+   +....+.+
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            699999 6788888877 448999999999887777  99999999985 333111110  11111111   11122244


Q ss_pred             cEEEecCCCCeeEEE-EecCCe-eeEEee---cccc------ccc-EEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248          149 MVMACPGLLKGQVRV-EDYGTK-KSKYIT---AHAS------RIA-SIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~-~~~~~~-~~~~~~---~~~~------~i~-~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~  216 (359)
                      +++.+   .++.+.+ .+.... ..+.+.   ....      ... ...++.+....+....++. +.+.+-...+.   
T Consensus       140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ---  212 (410)
T ss_pred             EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence            44443   2445554 332221 111111   1000      000 0223334433333334444 44333221111   


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +.   ..+++..++.||+|++||.-..+|.+.|...+-.+
T Consensus       213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence            11   23589999999999999999999998888765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.0056  Score=53.41  Aligned_cols=214  Identities=14%  Similarity=0.161  Sum_probs=112.5

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeee
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~  128 (359)
                      -....++.+|+++.+++++     +|...++.....+...    .+.-..+.|.+.+.+.+  ..++|.++.--..+...
T Consensus        33 ~~p~~ls~npngr~v~V~g-----~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCG-----DGEYEIYTALAWRNKA----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEE-----TTEEEEEETTTTEEEE----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             cCCeeEEECCCCCEEEEEc-----CCEEEEEEccCCcccc----cCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence            3456778888888888855     6888888733322222    34566788999888777  56889997432333323


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      .+....   .+-.+-. |. + |+..  .++.|.+++... +.++.+...  +|..+.|+++|.+++..+.+.  +.|++
T Consensus       104 ~i~~~~---~~~~If~-G~-L-L~~~--~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~il~  171 (443)
T PF04053_consen  104 SIKLPF---SVEKIFG-GN-L-LGVK--SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IYILK  171 (443)
T ss_dssp             ----SS----EEEEE--SS-S-EEEE--ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EEEEE
T ss_pred             EEcCCc---ccceEEc-Cc-E-EEEE--CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EEEEE
Confidence            443322   1222222 43 3 4332  244788877764 556666533  389999999999999998775  77776


Q ss_pred             cCCC--------------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCcc
Q 018248          208 TMDG--------------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLS  273 (359)
Q Consensus       208 ~~~~--------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  273 (359)
                      ....              ..+.++     ...|.+..|..|  .++-.+.. .++.  +-.++..               
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~---------------  226 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG---------------  226 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE---------------
T ss_pred             ecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc---------------
Confidence            4322              222222     247888888755  44444433 5665  4444310               


Q ss_pred             CCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          274 SKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                 .                 +..-..++..+...|+.+.|+....|+.+..+.++.
T Consensus       227 -----------~-----------------i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  227 -----------I-----------------IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -----------E-----------------EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             -----------e-----------------EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                       0                 111123567788888778999999999999998875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.08  E-value=0.0028  Score=49.42  Aligned_cols=68  Identities=9%  Similarity=0.019  Sum_probs=49.2

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEE-EEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLV-SMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS   93 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~   93 (359)
                      |++++.|. ++.+++.+.+++.+......    .+.|.+- .+.+++..+...+    .|++....|.++..++...+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~~~vk~~a~~d~~~glIycgs----hd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI----LETVKVRAQCDFDGGLIYCGS----HDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeee----hhhhccceEEcCCCceEEEec----CCCcEEEecccccceEEecc
Confidence            56788888 99999999999877766554    3444433 3445666655555    78999999999888777765

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.07  E-value=3.9e-06  Score=75.38  Aligned_cols=184  Identities=7%  Similarity=0.043  Sum_probs=128.0

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE-----ecCeEEEEEc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-----LNQKVYVYNF  121 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~  121 (359)
                      .|....++++|+-..+.+++.+    ..|.|+++++.+|....... |...|+-+.-+.+|...+     ..--..+|++
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~----~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGS----HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             ccccceeeEEeecCCceEEeee----ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            4667778888888888888877    67999999999999999888 999999999999987666     2235678998


Q ss_pred             c-cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEE-e---ecccccccEEEEccCCcEEEE
Q 018248          122 T-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKY-I---TAHASRIASIAMTLDGRFVAT  195 (359)
Q Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~-~---~~~~~~i~~~~~s~~~~~l~~  195 (359)
                      . .+.+.+.+..    ..++.|+..-...++.+   ......+|+... .++.+ +   .+....-++..|+|+..++. 
T Consensus      1175 ~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt---~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE----DKAVKFSNSLQFRALGT---EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             ccccCccccccc----cceeehhhhHHHHHhcc---cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            3 4555555542    24567776644433433   334566666554 33333 2   22233447889999998775 


Q ss_pred             EeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          196 ASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       196 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                        .||.   +||.+..+.++.|..  .. .-..=.|+|.|..++.-+     .|||+++-+
T Consensus      1247 --ndGv---LWDvR~~~aIh~FD~--ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 --NDGV---LWDVRIPEAIHRFDQ--FT-DYGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             --eCce---eeeeccHHHHhhhhh--he-ecccccccCCCceEEeec-----hhhhhHHHH
Confidence              5664   899998888877764  21 122346999999887654     689998865

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.05  E-value=0.0082  Score=53.74  Aligned_cols=227  Identities=14%  Similarity=0.105  Sum_probs=125.6

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCC---CceeE-EEEeccCCEEEEEecCCC-----CCCeEEEEECCCccE
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR---GGTQL-VSMLFRSNIICLVNSGPH-----QSNKVMIWDDHENRY   88 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~---~~v~~-~~~~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~~   88 (359)
                      ..++.++ ++.|.-+|.++++........ .+.   ..+.. ..+  .+..+++.+.+..     .++.+..+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            5666666 999999999999888777653 110   00111 111  1233333321100     358899999999998


Q ss_pred             EeeeccC-cc--------------------e-eEEEEec-ceeEEE--ecC------------------eEEEEEcccce
Q 018248           89 LGELSFR-SE--------------------V-KNVRLRR-DRIVVV--LNQ------------------KVYVYNFTDLK  125 (359)
Q Consensus        89 ~~~~~~~-~~--------------------v-~~~~~~~-~~~~~~--~d~------------------~i~i~d~~~~~  125 (359)
                      +-.++.. ..                    + ....+.+ .+.+++  .++                  .|.-+|..+++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            8877521 10                    1 1233333 344444  333                  79999999999


Q ss_pred             eeeeEeccCCCce------eeeee----cCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEE
Q 018248          126 LVDQIETVVNPTG------LCDVS----QNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVA  194 (359)
Q Consensus       126 ~~~~~~~~~~~~~------~~~~~----~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  194 (359)
                      .+..++.......      ...+.    -++....+++.+..+|.+.. +..+++.+-.....   ...++.+| + .+.
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vy  342 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVY  342 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEE
Confidence            9888754322111      01111    12221122333556887777 55556555443221   11233444 2 222


Q ss_pred             EE------------------eCCCCeEEEEEcCCCcEEEEeecCCCC------cce--EEEEecCCCCEEEEEcCCCcEE
Q 018248          195 TA------------------SSKGTLIRVFNTMDGSLLQEMRRGAER------AEI--YSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       195 ~~------------------~~dg~~i~iwd~~~~~~~~~~~~~~~~------~~i--~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      .+                  ..+|. +.-.|+.+|+.+-+.....+.      .+.  ..+..  .+..|+.++.||.|+
T Consensus       343 v~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~  419 (488)
T cd00216         343 LGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFR  419 (488)
T ss_pred             EccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEE
Confidence            21                  23567 888899999887776543111      111  11222  467888889999999


Q ss_pred             EEEccCCC
Q 018248          249 VFGLKVDS  256 (359)
Q Consensus       249 iw~~~~~~  256 (359)
                      .+|.++++
T Consensus       420 ald~~tG~  427 (488)
T cd00216         420 AFDATTGK  427 (488)
T ss_pred             EEECCCCc
Confidence            99999987

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.05  E-value=0.0047  Score=50.85  Aligned_cols=173  Identities=18%  Similarity=0.151  Sum_probs=99.2

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------CCCeEEEEECCCccEEeeeccCc----
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------QSNKVMIWDDHENRYLGELSFRS----   96 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~----   96 (359)
                      +.+.++|.++++.+-  .+.   .+-...+.++++++.+..+..--.      ..-.|.+||..+-+...++..+.    
T Consensus        17 ~rv~viD~d~~k~lG--mi~---~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLG--MID---TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEE--EEE---EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEE--Eee---cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            468899988765443  332   333444667888887765432100      34568999999988877765221    


Q ss_pred             ----ceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC-ccEEEecCCCCeeEEE--E
Q 018248           97 ----EVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG-PMVMACPGLLKGQVRV--E  164 (359)
Q Consensus        97 ----~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~d~~v~~--~  164 (359)
                          ....++++.+++++.     --..|.|.|+...+.+..+..+.    |.-+-|.++ .+..+|   .||.+.-  .
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC---~DGsl~~v~L  164 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLC---GDGSLLTVTL  164 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEE---TTSCEEEEEE
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEe---cCCceEEEEE
Confidence                123467788888776     45689999998888888887543    333334443 333333   3666555  4


Q ss_pred             ecCCeeeEEe----ecccc-cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          165 DYGTKKSKYI----TAHAS-RIASIAMTLDGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       165 ~~~~~~~~~~----~~~~~-~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                      +..++..+..    ..... ....-++...+..++--+.+|. |+--|+....
T Consensus       165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~-v~~~dlsg~~  216 (342)
T PF06433_consen  165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN-VYSADLSGDS  216 (342)
T ss_dssp             TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE-EEEEEETTSS
T ss_pred             CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE-EEEEeccCCc
Confidence            4445443221    11122 2233445445544555778888 8888876554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.0017  Score=60.01  Aligned_cols=133  Identities=17%  Similarity=0.252  Sum_probs=90.1

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC-------CccEEEecCCCCeeEEEEecCCee--eEEee----ccc
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA-------GPMVMACPGLLKGQVRVEDYGTKK--SKYIT----AHA  178 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~g~~d~~v~~~~~~~~~--~~~~~----~~~  178 (359)
                      ....|+-.|++.|+.+..+..+... .+..+.|+.       ...++..   .++.+..|+.+...  +..-.    ...
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccC
Confidence            4578999999999999999886643 356666653       3334433   45566666655422  21111    234


Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ....|++-+.+| +||+|+.+|. ||+||- .|..-++.-.+ -..+|..|..+.||++|++.+ +..+.+++..
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            567788877777 6899999999 999994 44333332222 347999999999999988665 4568888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.96  E-value=0.0015  Score=44.03  Aligned_cols=67  Identities=22%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             ccEEEEcc---CC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          181 IASIAMTL---DG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       181 i~~~~~s~---~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      |+++++..   || +.|++|+.|.. |++|+  ..+.+.++..   ...|++++-... ..++.+-.+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence            55666654   33 48999999999 99997  5577888874   468888887766 5677888899998887644

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00015  Score=59.51  Aligned_cols=90  Identities=18%  Similarity=0.269  Sum_probs=74.1

Q ss_pred             EecCCeeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC-CEEEEE
Q 018248          164 EDYGTKKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA-QWLAAS  241 (359)
Q Consensus       164 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~  241 (359)
                      ...+.+....+..+...|..++|||..+ ++..++.+.. |+|.|+++...+..+..  + ..+++++|.-|. .+|..|
T Consensus       179 ~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  179 ESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             ccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcceeEEe
Confidence            4444455566677888999999999888 7788888988 99999999988888876  3 689999999765 467788


Q ss_pred             cCCCcEEEEEccCCCC
Q 018248          242 SDKGTVHVFGLKVDSG  257 (359)
Q Consensus       242 ~~dg~i~iw~~~~~~~  257 (359)
                      -..|.|.|||++..+.
T Consensus       255 l~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEG  270 (463)
T ss_pred             ccCceEEEEEccCCCc
Confidence            8899999999998763

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.86  E-value=5.1e-06  Score=71.92  Aligned_cols=200  Identities=12%  Similarity=0.184  Sum_probs=118.7

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE-eee--ccCcceeEEEEecc-eeEEE-------ecCeEEE
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL-GEL--SFRSEVKNVRLRRD-RIVVV-------LNQKVYV  118 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~--~~~~~v~~~~~~~~-~~~~~-------~d~~i~i  118 (359)
                      ...+.+++..++.+..+++.|.  .+|.|.+-.++...-- .++  ++..+.++++|++- ...++       .|..+.|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~--atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGS--ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCCceeehhhcCCchhhhhhcc--ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            3456777777666533333333  5699988876554222 222  26778999999884 34444       6789999


Q ss_pred             EEcccc--ee--eeeEec-cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc-CCcE
Q 018248          119 YNFTDL--KL--VDQIET-VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL-DGRF  192 (359)
Q Consensus       119 ~d~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  192 (359)
                      ||+.++  .+  -..+.. .......++|-  .+..++.+ |.....+.+.+.+........-.+..+..+.+.| .+.+
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwl--rd~klvla-Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWL--RDTKLVLA-GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             eecccccCCCccccccccccccCccccccc--cCcchhhc-ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCc
Confidence            999765  11  112222 22223445554  33333444 7777788886666544443333455677788888 7778


Q ss_pred             EEEEeCCCCeEEEEEc-CCCc-EEEEeecCC--CCcceEEEEecCCCC-EEEEEc-CCCcEEEEEccCCC
Q 018248          193 VATASSKGTLIRVFNT-MDGS-LLQEMRRGA--ERAEIYSLAFSSNAQ-WLAASS-DKGTVHVFGLKVDS  256 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~-~~~~-~~~~~~~~~--~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~  256 (359)
                      +++-. ||. |.+||. ++-+ ++..+....  ....+..++|.|... .+++.. ..++|+.+++....
T Consensus       211 ~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~  278 (783)
T KOG1008|consen  211 FCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG  278 (783)
T ss_pred             eeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence            76655 888 999993 3322 222222110  112488999999543 444444 45789999987543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.85  E-value=0.0034  Score=56.96  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=72.3

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec---CCCCe--eEEEEecCCeeeEEeecccccccEEEE
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP---GLLKG--QVRVEDYGTKKSKYITAHASRIASIAM  186 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~d~--~v~~~~~~~~~~~~~~~~~~~i~~~~~  186 (359)
                      .+|.+.-.+-..-..+.-..+....+...+++|+++....+..   ...|.  .+.+....+.. +.+..- .......|
T Consensus       327 ~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g-~~~t~PsW  404 (591)
T PRK13616        327 VDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEG-HSLTRPSW  404 (591)
T ss_pred             ECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecC-CCCCCceE
Confidence            6666655442221222212122234567889999987443331   01133  44443443333 333222 24888999


Q ss_pred             ccCCcEEEEEeCCCCeEEEE-----------EcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          187 TLDGRFVATASSKGTLIRVF-----------NTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       187 s~~~~~l~~~~~dg~~i~iw-----------d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      +|||+.|++.......+++.           ++..++...     ...+.|..+.|||||..|+... +|.|++=-+.
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv  476 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE  476 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence            99999888775432213333           332222211     1235799999999999888765 4777774443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.016  Score=50.05  Aligned_cols=236  Identities=17%  Similarity=0.133  Sum_probs=152.5

Q ss_pred             eEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248            9 IHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      ...+.+.+++..+....  ...+...+..  ......... .-......+.+.+.++.+.....   .++.|.+.|..+.
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~---~~~~v~vid~~~~  106 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTG---DSNTVSVIDTATN  106 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccc--cceeeeecc-CCCccccceeeCCCCCeEEEecC---CCCeEEEEcCccc
Confidence            34567788886665544  2333333333  111111111 00012234455555554444432   3589999998888


Q ss_pred             cEEeeeccCcceeEEEEecceeEEE---e---cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee
Q 018248           87 RYLGELSFRSEVKNVRLRRDRIVVV---L---NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ  160 (359)
Q Consensus        87 ~~~~~~~~~~~v~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~  160 (359)
                      +.............+++++++..+.   .   ++.+.+.|..+.+.+........+ ..+++.|++...+++.  ..++.
T Consensus       107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~~~~  183 (381)
T COG3391         107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SDDNT  183 (381)
T ss_pred             ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cCCCe
Confidence            8888877555788999999986555   2   588999998888888886554444 6789999998766654  35778


Q ss_pred             EEEEecCCeeeEE-----eecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEE-eecCCCCcceEEEEe
Q 018248          161 VRVEDYGTKKSKY-----ITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQE-MRRGAERAEIYSLAF  231 (359)
Q Consensus       161 v~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~  231 (359)
                      +.+.+.+...+..     ...-......+.++|+|.++......   +. +...|..++..... .... .. ....+..
T Consensus       184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~v~~  260 (381)
T COG3391         184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRGVAV  260 (381)
T ss_pred             EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCceeE
Confidence            8886666554443     11122345788999999977665544   47 99999888877665 2221 22 4567899


Q ss_pred             cCCCCEEEEEcC-CCcEEEEEccCCC
Q 018248          232 SSNAQWLAASSD-KGTVHVFGLKVDS  256 (359)
Q Consensus       232 s~~~~~l~~~~~-dg~i~iw~~~~~~  256 (359)
                      +|+|+.+.+... .+.+.+-|..+..
T Consensus       261 ~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         261 DPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            999998887744 4778888887755

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.83  E-value=9e-05  Score=65.16  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL  213 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~  213 (359)
                      .+...++....+.  ++. |+..|.++++...+...+.++.  ..+.+..+.++++..++|.|+..|. |.++-+....+
T Consensus        35 ~v~lTc~dst~~~--l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p  110 (726)
T KOG3621|consen   35 RVKLTCVDATEEY--LAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELP  110 (726)
T ss_pred             eEEEEEeecCCce--EEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCC
Confidence            3455566666655  555 6678999999888876666554  5566777888999999999999998 99998765432


Q ss_pred             EE--Eee--cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          214 LQ--EMR--RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       214 ~~--~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ..  .+.  ...|...|++++|++|+..+.+|...|.|..-.+++
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            11  111  122567999999999999999999999999988887

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00014  Score=63.15  Aligned_cols=93  Identities=16%  Similarity=0.197  Sum_probs=73.7

Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccccccc-EEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA-SIAMTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      .+..+.|+|.-+-  +|. +..+|.+.+...+.+.+-++..|...++ +++|.|||++||.|-.||+ |++.|..++..+
T Consensus        22 ~i~~~ewnP~~dL--iA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMDL--IAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccch--hhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence            3556778887665  554 5578999987777788888887777777 9999999999999999999 999999999888


Q ss_pred             EEeecCCCCcceEEEEecC
Q 018248          215 QEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~~~s~  233 (359)
                      ..+... ....|.++-|++
T Consensus        98 ~~~~~s-~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFS-VETDISKGIWDR  115 (665)
T ss_pred             eccccc-cccchheeeccc
Confidence            774321 345788888863

>smart00320 WD40 WD40 repeats

Probab=97.79  E-value=0.00011  Score=39.33  Aligned_cols=38  Identities=32%  Similarity=0.650  Sum_probs=31.9

Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      +.+..+..  |...|.++.|+++++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44555554  667899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.78  E-value=0.0048  Score=57.12  Aligned_cols=129  Identities=19%  Similarity=0.258  Sum_probs=84.0

Q ss_pred             CCCeEEEEECCCccEEeeeccCc--ceeEEEEe-------cceeEEE-ecCeEEEEEcccc--eeeee-Eec--cCCCce
Q 018248           74 QSNKVMIWDDHENRYLGELSFRS--EVKNVRLR-------RDRIVVV-LNQKVYVYNFTDL--KLVDQ-IET--VVNPTG  138 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~-------~~~~~~~-~d~~i~i~d~~~~--~~~~~-~~~--~~~~~~  138 (359)
                      ....|+-.|++.|+.+.+.+...  +|..++-.       +...++. .++.+..||.+-.  +++.. ...  ......
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            35889999999999999998333  34544322       3334555 8999999998643  22211 111  222334


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCCeeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      +++-+.+|.   +|. |+.+|.||+++..+..-+ .+.+-..+|..|..+.||++|++.+.. . +.+++.
T Consensus       582 ~~aTt~~G~---iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t  646 (794)
T PF08553_consen  582 CFATTEDGY---IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT  646 (794)
T ss_pred             EEEecCCce---EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence            444443332   555 778999999876654333 356678899999999999988766544 4 777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.78  E-value=0.027  Score=50.81  Aligned_cols=188  Identities=15%  Similarity=0.123  Sum_probs=104.8

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeE---E-----EEeccCCEEEEEecCCCCCCeEEEEECCCccEE
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQL---V-----SMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL   89 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~---~-----~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~   89 (359)
                      ..+.+++ ++.|.-+|..+++.+...... .. ..+..   .     .....+..+++.+    .|+.+.-.|.++|+.+
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~-~~-~~~~~~~~~~~~~rg~av~~~~v~v~t----~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPK-LP-DDVIPVMCCDVVNRGVALYDGKVFFGT----LDARLVALDAKTGKVV  143 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCC-CC-cccccccccccccccceEECCEEEEEc----CCCEEEEEECCCCCEE
Confidence            3455555 888999999998888766542 11 11110   0     0112234455544    5799999999999998


Q ss_pred             eeeccCc-----ceeEEEEecceeEEE-e-------cCeEEEEEcccceeeeeEeccCCC--------------------
Q 018248           90 GELSFRS-----EVKNVRLRRDRIVVV-L-------NQKVYVYNFTDLKLVDQIETVVNP--------------------  136 (359)
Q Consensus        90 ~~~~~~~-----~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~--------------------  136 (359)
                      .......     .+.+.-.--++.+++ .       +|.|..+|.++|+.+..+..-...                    
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            8765211     121111111445554 1       589999999999988776432111                    


Q ss_pred             -----------ce-eeeeecCCCccEEEecCC---------------CCeeEEEEecCCeeeEEeeccccc---------
Q 018248          137 -----------TG-LCDVSQNAGPMVMACPGL---------------LKGQVRVEDYGTKKSKYITAHASR---------  180 (359)
Q Consensus       137 -----------~~-~~~~~~~~~~~~l~~~g~---------------~d~~v~~~~~~~~~~~~~~~~~~~---------  180 (359)
                                 +. ..++.+..+.+++.+ |.               .+..|.++..+++..-.++.....         
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence                       00 113333333333333 22               123344455555554444332111         


Q ss_pred             ccEEEEccCCc---EEEEEeCCCCeEEEEEcCCCcEE
Q 018248          181 IASIAMTLDGR---FVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       181 i~~~~~s~~~~---~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      ..-+.+..+|+   .++.+..+|. +.+.|..+|+.+
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence            11222334666   7889999999 999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.76  E-value=0.024  Score=49.79  Aligned_cols=195  Identities=12%  Similarity=0.135  Sum_probs=104.4

Q ss_pred             EEEEeccCCEEEEEe--cCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--------e------cCeEEE
Q 018248           55 LVSMLFRSNIICLVN--SGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--------L------NQKVYV  118 (359)
Q Consensus        55 ~~~~~~~~~~~~~~~--~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~------d~~i~i  118 (359)
                      ...++|+++.+++.-  +|. ....+++.|+.+|+.+...-.......+.|.+++..++        .      ...|+.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~-e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGS-EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTS-SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCC-ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            467788899887653  232 44679999999997765432222223499999976655        1      345888


Q ss_pred             EEccccee--eeeEeccCCCc--eeeeeecCCCccEEEecCCCC-eeEEEEecCC-----eeeEEeecccccccEEEEcc
Q 018248          119 YNFTDLKL--VDQIETVVNPT--GLCDVSQNAGPMVMACPGLLK-GQVRVEDYGT-----KKSKYITAHASRIASIAMTL  188 (359)
Q Consensus       119 ~d~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~d-~~v~~~~~~~-----~~~~~~~~~~~~i~~~~~s~  188 (359)
                      |.+.+...  ...++......  ..+..+.+++.+++.+....+ ..+++-+...     ...+.+......+....-+.
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~  286 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH  286 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence            88865532  23444444333  346678888776665544445 5677644433     24444444444444433333


Q ss_pred             CCcEEEEEeC---CCCeEEEEEcCCCcE---EEEeecCCCCcceEEEEecCCCCEEE-EEcCCC--cEEEEEcc
Q 018248          189 DGRFVATASS---KGTLIRVFNTMDGSL---LQEMRRGAERAEIYSLAFSSNAQWLA-ASSDKG--TVHVFGLK  253 (359)
Q Consensus       189 ~~~~l~~~~~---dg~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg--~i~iw~~~  253 (359)
                      .+.+++....   .+. |.-.++.+...   ...+..+.....+..+..  .+.+|+ .-..++  .|+++++.
T Consensus       287 ~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  287 GDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             TTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             CCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            4544444432   344 66667766542   223333212224555554  344444 444444  47788887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.76  E-value=0.022  Score=49.11  Aligned_cols=235  Identities=14%  Similarity=0.104  Sum_probs=111.7

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeE--EEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQL--VSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      .|.++.|.++..-|++|. .|.|.||.....+..-..... . ......  +.....+..+.-++.-  .+..     ++
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~di~~r--~~~~-----~~   73 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP-P-DLDYNFRRFSLNNSPGKLTDISDR--APPS-----LK   73 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--GGGSS-SEEE-GGG----TT------S
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC-c-ccCcccccccccCCCcceEEehhh--CCcc-----cc
Confidence            589999999988999988 999999987643221100100 0 000000  0000011111111100  0000     01


Q ss_pred             Cc-cEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccC--------CCceeeeee---cCCCc-
Q 018248           85 EN-RYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVV--------NPTGLCDVS---QNAGP-  148 (359)
Q Consensus        85 ~~-~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~-  148 (359)
                      .| .+...+. ..++|++++.+.-|-..+  .+|.+.|.|++....+..-....        ..+..+.|+   ..++. 
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             cccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            11 2233333 468999999987776666  78999999998887776633222        123344443   23332 


Q ss_pred             --cEEEecCCCCeeEEEEecC----Ce----eeEEeecccccccEEE-EccC---------------------CcEEEEE
Q 018248          149 --MVMACPGLLKGQVRVEDYG----TK----KSKYITAHASRIASIA-MTLD---------------------GRFVATA  196 (359)
Q Consensus       149 --~~l~~~g~~d~~v~~~~~~----~~----~~~~~~~~~~~i~~~~-~s~~---------------------~~~l~~~  196 (359)
                        ..+.+ |...|.+.++...    +.    .......+.++|..+. ++.+                     ..+++++
T Consensus       154 SSi~L~v-GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  154 SSICLLV-GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             EEEEEEE-EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             cceEEEE-EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence              34444 6677888885432    11    1111124455555554 3211                     1144444


Q ss_pred             eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe-----cCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          197 SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF-----SSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       197 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +.. . ++++...+.+.......  ..-....+.+     ...+..|++-..+|.|+++.+..-+
T Consensus       233 Se~-~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  233 SES-D-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             -SS-E-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             ccc-c-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence            443 4 99999888776655542  2223334444     2356678888999999999998755

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.75  E-value=0.014  Score=46.61  Aligned_cols=193  Identities=8%  Similarity=0.077  Sum_probs=107.8

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFT  122 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~  122 (359)
                      +-...++.+.+.++.+.++.+..   ..+.|..++. +|+.++.+.  ..+....+++..++.+++   .++.+.++++.
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d---~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQD---EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEET---TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CccCCccccEEcCCCCeEEEEEC---CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34566899999998888888876   4688988885 688888887  336788999998888887   47899999883


Q ss_pred             cc------eeeeeEe-----ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC----eeeEEe--------ecccc
Q 018248          123 DL------KLVDQIE-----TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT----KKSKYI--------TAHAS  179 (359)
Q Consensus       123 ~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~----~~~~~~--------~~~~~  179 (359)
                      ..      .....+.     .......-+++.+..+.++++-   +..-..++..+.    ..+...        .....
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccceec
Confidence            21      1112222     1223466789999888766654   333333422221    111111        11234


Q ss_pred             cccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCC--C-----CcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          180 RIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGA--E-----RAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       180 ~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      .+.+++++|... +++.+..... |..+| .+|+.+..+....  |     -...-.|+|.++|++.++ ++-+..++|
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            578899998654 5555555665 88999 6788766554321  1     125788999999976665 455544444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.74  E-value=0.022  Score=48.56  Aligned_cols=235  Identities=14%  Similarity=0.140  Sum_probs=100.7

Q ss_pred             CceEEEEEc-----------cCCCEEEEec--CCceEEEEcCC--Ccceeeeeccc--CCC----CceeEEEEeccCCEE
Q 018248            7 ITIHHLALN-----------QDHGCFATGT--ETGFRVYLSDP--YKPIMRRDFDR--NPR----GGTQLVSMLFRSNII   65 (359)
Q Consensus         7 ~~v~~~~~s-----------~~g~~l~~~~--d~~i~iw~~~~--~~~~~~~~~~~--~h~----~~v~~~~~~~~~~~~   65 (359)
                      ++....-|+           .+.++|+..+  ++.|.|+|+.+  .+..+.+.++.  -+.    .....+...++++.+
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im  144 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM  144 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence            456666666           3567887777  78899999873  23333333320  000    011112223445444


Q ss_pred             EEEecCCC--CCCeEEEEECCCccEEeeeccC----cceeEEEEecceeEEE-----------------------ecCeE
Q 018248           66 CLVNSGPH--QSNKVMIWDDHENRYLGELSFR----SEVKNVRLRRDRIVVV-----------------------LNQKV  116 (359)
Q Consensus        66 ~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~-----------------------~d~~i  116 (359)
                      +.+-+...  ..|.+.+.|-++.+........    .--.++-+.|..+.++                       ...++
T Consensus       145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l  224 (461)
T PF05694_consen  145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL  224 (461)
T ss_dssp             EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred             EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence            43322211  3467888887777777666521    2234566677655554                       14689


Q ss_pred             EEEEcccceeeeeEeccCCCc--eeeeeecCCCccEEEecCCCCeeEEEEec-C-C----eeeEEeecc-----------
Q 018248          117 YVYNFTDLKLVDQIETVVNPT--GLCDVSQNAGPMVMACPGLLKGQVRVEDY-G-T----KKSKYITAH-----------  177 (359)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~-~----~~~~~~~~~-----------  177 (359)
                      .+||+.+.+.++++.......  --+.|..+++...-.+++.-...|..|-. + +    +.+..+...           
T Consensus       225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml  304 (461)
T PF05694_consen  225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML  304 (461)
T ss_dssp             EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred             EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence            999999999999997654322  23455555443222221113445555332 2 2    222222211           


Q ss_pred             ------cccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCc---EEEEeecCC--------------CCcceEEEEecC
Q 018248          178 ------ASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGS---LLQEMRRGA--------------ERAEIYSLAFSS  233 (359)
Q Consensus       178 ------~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~---~~~~~~~~~--------------~~~~i~~~~~s~  233 (359)
                            ..-|+.|.+|.|.++|..++ .+|. |+.||+.+..   +..++..+.              -.+...-+..|.
T Consensus       305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~  383 (461)
T PF05694_consen  305 KPFGAVPPLITDILISLDDRFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL  383 (461)
T ss_dssp             GGG-EE------EEE-TTS-EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred             cccccCCCceEeEEEccCCCEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence                  24578999999999998777 5777 9999997643   333322110              112335677788


Q ss_pred             CCCEEEEEc
Q 018248          234 NAQWLAASS  242 (359)
Q Consensus       234 ~~~~l~~~~  242 (359)
                      ||+.|...+
T Consensus       384 DGkRlYvTn  392 (461)
T PF05694_consen  384 DGKRLYVTN  392 (461)
T ss_dssp             TSSEEEEE-
T ss_pred             CCeEEEEEe
Confidence            888776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=0.00011  Score=39.28  Aligned_cols=38  Identities=32%  Similarity=0.648  Sum_probs=33.2

Q ss_pred             eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          169 KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      .....+..|...|.++.|++++.++++++.|+. +++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            345666788899999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.65  E-value=0.006  Score=41.27  Aligned_cols=84  Identities=14%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE-
Q 018248           74 QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV-  150 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (359)
                      .|..|++|+  ..+.+.++...+.|.++.-...+++..  .+|+|-+|+-  .+.+..++....++....+..++++.. 
T Consensus        23 ~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~e   98 (111)
T PF14783_consen   23 DDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPE   98 (111)
T ss_pred             CCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceE
Confidence            789999997  558888888888899999888877766  9999999984  566667766555555555555554322 


Q ss_pred             EEecCCCCeeEE
Q 018248          151 MACPGLLKGQVR  162 (359)
Q Consensus       151 l~~~g~~d~~v~  162 (359)
                      |++ |-.+|.|-
T Consensus        99 LI~-GwsnGkve  109 (111)
T PF14783_consen   99 LIV-GWSNGKVE  109 (111)
T ss_pred             EEE-EecCCeEE
Confidence            333 55566654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00041  Score=60.49  Aligned_cols=78  Identities=17%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE-EEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY-SLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ..+.-+.|+|.-.++|++..+|. |-+..+. .+.+.++..  +...++ +++|.|||+.||.|-.||+|++-|+.++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            45678899999999999999999 9999876 778888874  334555 999999999999999999999999999886


Q ss_pred             CCC
Q 018248          258 SPG  260 (359)
Q Consensus       258 ~~~  260 (359)
                      ...
T Consensus        97 l~~   99 (665)
T KOG4640|consen   97 LVS   99 (665)
T ss_pred             eec
Confidence            544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.53  E-value=0.064  Score=48.48  Aligned_cols=233  Identities=10%  Similarity=0.090  Sum_probs=126.7

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCC--ceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEeeec
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRG--GTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGELS   93 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~   93 (359)
                      ..+++++ ++.+.-.|.++++........ .+..  .+...-.. .++.+++...+..  .++.|.-+|.++|+.+-.+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            3555666 999999999999888766542 1111  11111111 1234443332110  26899999999998887764


Q ss_pred             -cC-c------------------------------cee-EEEEecceeEEE--e-------------c----CeEEEEEc
Q 018248           94 -FR-S------------------------------EVK-NVRLRRDRIVVV--L-------------N----QKVYVYNF  121 (359)
Q Consensus        94 -~~-~------------------------------~v~-~~~~~~~~~~~~--~-------------d----~~i~i~d~  121 (359)
                       .. .                              .+. .+++.|...++.  .             |    ..|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence             11 1                              111 224444433333  1             1    26788889


Q ss_pred             ccceeeeeEeccCCCce---------eeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEE--------ee---c-cc-
Q 018248          122 TDLKLVDQIETVVNPTG---------LCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKY--------IT---A-HA-  178 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~--------~~---~-~~-  178 (359)
                      ++|+....++...+...         .+.+..+++..-++..+..+|.+++ +..+++.+..        ..   . .. 
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g  358 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG  358 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence            99999888876433322         2233234442223323668999998 4445555311        10   0 00 


Q ss_pred             cc----------------------------ccEEEEccCCcEEEEEeCC-------------------------------
Q 018248          179 SR----------------------------IASIAMTLDGRFVATASSK-------------------------------  199 (359)
Q Consensus       179 ~~----------------------------i~~~~~s~~~~~l~~~~~d-------------------------------  199 (359)
                      .+                            -..++++|+..+++....+                               
T Consensus       359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~  438 (527)
T TIGR03075       359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD  438 (527)
T ss_pred             CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence            00                            0125666665554433222                               


Q ss_pred             --CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          200 --GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       200 --g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                        |. |.-+|+.+++.+-+.+....  ...+. ..-.+.+++.++.+|.++.+|.++++.
T Consensus       439 ~~g~-l~AiD~~tGk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~  494 (527)
T TIGR03075       439 HMGS-LIAWDPITGKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEE  494 (527)
T ss_pred             Ccee-EEEEeCCCCceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCE
Confidence              44 77788888887766653211  11111 112455777788899999999999983

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.48  E-value=0.039  Score=44.66  Aligned_cols=118  Identities=19%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE-cCCCcEE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN-TMDGSLL  214 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd-~~~~~~~  214 (359)
                      .+...+++++++....+..+.....+++....+.......  ...+....|++++...+....+.. .+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence            4667899999886444431223345555544443333333  237888899999887777666666 66663 3333322


Q ss_pred             -EEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEEEEEccCCC
Q 018248          215 -QEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVHVFGLKVDS  256 (359)
Q Consensus       215 -~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~  256 (359)
                       ..+......+.|..+.+||||..++...   .++.|.|=-+....
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence             2222211112899999999999877665   35778887776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.00081  Score=62.40  Aligned_cols=100  Identities=16%  Similarity=0.256  Sum_probs=68.7

Q ss_pred             EEecCCCCeeEEEEecCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-cceE
Q 018248          151 MACPGLLKGQVRVEDYGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER-AEIY  227 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~i~  227 (359)
                      ++. |+..|.+-..+.++.  +...-..-.++|++++|+.+|+.++.|-.+|. |.+||+..++.++.+..+.++ ..+.
T Consensus       102 ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  102 IVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             EEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEE
Confidence            444 556777777555443  22222334679999999999999999999999 999999999988887653221 2333


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .+.+..++..+.++...|.  +|.+.-
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEEEe
Confidence            4445556667788777774  676643

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.0043  Score=53.37  Aligned_cols=137  Identities=18%  Similarity=0.282  Sum_probs=90.0

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe----cCCCCeeEEEEecCCe---eeEEeecc----ccc
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC----PGLLKGQVRVEDYGTK---KSKYITAH----ASR  180 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~d~~v~~~~~~~~---~~~~~~~~----~~~  180 (359)
                      ....++-.|++.|+.+...+.+.. +..+.+.|+.+..-+..    .|-.+..|.-|+.+-+   .+...+.|    ...
T Consensus       354 ~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n  432 (644)
T KOG2395|consen  354 EQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN  432 (644)
T ss_pred             CcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence            345788889999999999887665 77788888765432221    1334555555655432   22222333    234


Q ss_pred             ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ..|.+-..+| ++++||.+|. |++||- .+..-++.-.+ -..+|..+..+.||++|++.+ +..+.+-++.-
T Consensus       433 Fsc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~  501 (644)
T KOG2395|consen  433 FSCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLIDTLI  501 (644)
T ss_pred             cceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence            5566655555 7899999999 999996 55444333322 456999999999999987655 55677777654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.0094  Score=51.39  Aligned_cols=138  Identities=16%  Similarity=0.292  Sum_probs=89.3

Q ss_pred             EEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEeccee---------EEE-ecCeEEEEEcccc-e-eeeeEec
Q 018248           65 ICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRI---------VVV-LNQKVYVYNFTDL-K-LVDQIET  132 (359)
Q Consensus        65 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~-~d~~i~i~d~~~~-~-~~~~~~~  132 (359)
                      +++.+++  ....++-.|++.|+.+.+.+....|.-+.+.|+..         ++. .++.|.-||.+-. + .+...+.
T Consensus       347 lil~~~~--~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  347 LILMDGG--EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             eEeeCCC--CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            3344444  34788899999999999999666688788877642         233 8899999998532 2 2222222


Q ss_pred             cC--CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeee-EEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          133 VV--NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      +.  .....-++...+++ ++++ |+.+|.|++++..+... ..+++-..+|..+..+.+|++|+..+. .. +.+-++
T Consensus       425 kqy~~k~nFsc~aTT~sG-~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-LlLi~t  499 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESG-YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-LLLIDT  499 (644)
T ss_pred             cccccccccceeeecCCc-eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-EEEEEE
Confidence            21  11122233333333 2444 77899999988765443 346778889999999999998865544 34 666664

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.33  E-value=0.053  Score=49.50  Aligned_cols=185  Identities=11%  Similarity=0.114  Sum_probs=96.8

Q ss_pred             CceEEEEEccCCCEEEEec-------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------
Q 018248            7 ITIHHLALNQDHGCFATGT-------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------   73 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------   73 (359)
                      ..+.+.++||||+.+|...       |..-.||-...+.... ....   ......-.|++++..+.++..+..      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~-~lt~---g~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV-QVLE---GHSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce-eeec---CCCCCCceECCCCCceEEEecCcceEEEec
Confidence            3578899999999886653       3333444433222221 1121   223566678888777766653210      


Q ss_pred             --CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEE---EEccccee-e---eeEec-cCCCceeee
Q 018248           74 --QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYV---YNFTDLKL-V---DQIET-VVNPTGLCD  141 (359)
Q Consensus        74 --~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i---~d~~~~~~-~---~~~~~-~~~~~~~~~  141 (359)
                        ..+.+.+.++..++...  .....|..+.|+|||..++  .+++|++   -....|.. +   ..+.. ....+..+.
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence              12445555555544433  4456799999999999888  7788887   33334431 1   11221 122235567


Q ss_pred             eecCCCccEEEecCCCCeeEEEEecCCeeeEEeec--ccccccEEEEccCCcEEEEEeCCCC
Q 018248          142 VSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA--HASRIASIAMTLDGRFVATASSKGT  201 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~  201 (359)
                      |..++. ++++. ...+..+..-..++.....+..  ...++..++=+++  -++....++.
T Consensus       504 W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        504 WRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             EecCCE-EEEEe-cCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            776665 33333 2223334333444433332222  2445666665553  3444444543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.27  E-value=0.078  Score=43.62  Aligned_cols=214  Identities=19%  Similarity=0.278  Sum_probs=117.1

Q ss_pred             cCCCEEEEecCCceEEEEcC-CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe----
Q 018248           16 QDHGCFATGTETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG----   90 (359)
Q Consensus        16 ~~g~~l~~~~d~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~----   90 (359)
                      ..++.|+.|++..+.+++.. ..+..  ...   +...|..+...+.-+.+++.+     |+.+.++++..-....    
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~--~i~---~~~~I~ql~vl~~~~~llvLs-----d~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPT--RIL---KLSSITQLSVLPELNLLLVLS-----DGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccce--eEe---ecceEEEEEEecccCEEEEEc-----CCccEEEEchhhcccccccc
Confidence            46788999995559999993 32222  222   134488888888778877776     5899999976543333    


Q ss_pred             -----------eeccCcceeEEE---EecceeEEE--ecCeEEEEEcccc-----eeeeeEeccCCCceeeeeecCCCcc
Q 018248           91 -----------ELSFRSEVKNVR---LRRDRIVVV--LNQKVYVYNFTDL-----KLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        91 -----------~~~~~~~v~~~~---~~~~~~~~~--~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                                 .+.....+...+   -......++  ...+|.+|.....     +..+.+... ..+..++|.  ++. 
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~-  150 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNK-  150 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCE-
Confidence                       122223344444   112233343  7779999887542     455566554 444556665  444 


Q ss_pred             EEEecCCCCeeEEEEecCCeeeEEeecc------------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE--
Q 018248          150 VMACPGLLKGQVRVEDYGTKKSKYITAH------------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ--  215 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~--  215 (359)
                       ++. |..++...++..++.....+...            ..++..+.. +++.+|++-  +.  +-+|=-..|+..+  
T Consensus       151 -i~v-~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~--~g~fv~~~G~~~r~~  223 (275)
T PF00780_consen  151 -ICV-GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN--IGVFVNKNGEPSRKS  223 (275)
T ss_pred             -EEE-EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc--eEEEEcCCCCcCccc
Confidence             333 33454444444433332222111            122333333 345666543  22  3333224554443  


Q ss_pred             EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+.-   ...+.++++.  ..+|+..+.++ |.||++.+++
T Consensus       224 ~i~W---~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~  258 (275)
T PF00780_consen  224 TIQW---SSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGE  258 (275)
T ss_pred             EEEc---CCchhEEEEE--CCEEEEECCCE-EEEEECcCCc
Confidence            3332   2356677773  45888776654 9999999987

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.18  E-value=0.0018  Score=36.49  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=28.3

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSD   35 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~   35 (359)
                      -...|.+++|+|...+||.|+ +|.|.+|.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            456899999999999999999 9999999984

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.13  E-value=0.094  Score=41.97  Aligned_cols=189  Identities=13%  Similarity=0.082  Sum_probs=95.5

Q ss_pred             CceEEEEEccCCCEEEEe-c-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            7 ITIHHLALNQDHGCFATG-T-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~-~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ..++.++|+|+...|++. . .+.|..++.+ ++.+....+. + .+....+++.- ++.++++..   .++.+.++++.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-g-~~D~EgI~y~g-~~~~vl~~E---r~~~L~~~~~~   94 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-G-FGDYEGITYLG-NGRYVLSEE---RDQRLYIFTID   94 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-S--SSEEEEEE-S-TTEEEEEET---TTTEEEEEEE-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-C-CCCceeEEEEC-CCEEEEEEc---CCCcEEEEEEe
Confidence            459999999987666544 4 5666666654 4555444553 2 34455566543 334444442   46899988873


Q ss_pred             Cc------cEEeeec------cCcceeEEEEecce-eEEE--ecCeEEEEEccc---ceeeeeE--------eccCCCce
Q 018248           85 EN------RYLGELS------FRSEVKNVRLRRDR-IVVV--LNQKVYVYNFTD---LKLVDQI--------ETVVNPTG  138 (359)
Q Consensus        85 ~~------~~~~~~~------~~~~v~~~~~~~~~-~~~~--~d~~i~i~d~~~---~~~~~~~--------~~~~~~~~  138 (359)
                      ..      .....+.      .+..+..++|+|.+ .+++  ...-..+|.+..   ...+...        ........
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            32      1122222      33458899999964 3333  554455555532   1111111        01223456


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccc---------ccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHA---------SRIASIAMTLDGRFVATASSKGTLIRVF  206 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~~i~iw  206 (359)
                      .+++.|....+++.+  ..+..+...+.+++.+..+.-..         .+...|+|.++|++.+ .++-+. .++|
T Consensus       175 ~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl-fy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL-FYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-EEEE
T ss_pred             ceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-EEEe
Confidence            778888877776665  25666666778887766553222         3577899999997554 445444 4444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.1  Score=41.75  Aligned_cols=157  Identities=11%  Similarity=0.103  Sum_probs=98.4

Q ss_pred             CCccEEeeeccCcceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCC--CceeeeeecCCCccEEEecCC
Q 018248           84 HENRYLGELSFRSEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVN--PTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +.|+++.....+..-..+.++|.....+     -.....++|..+.+....+...++  -..--.|++++..+| ++-+.
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd  134 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND  134 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence            5677777777777778889988654332     344677899888777666644332  223347889887533 33222


Q ss_pred             ---CCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCC------------------CCeEEEEEcCCCcE
Q 018248          157 ---LKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSK------------------GTLIRVFNTMDGSL  213 (359)
Q Consensus       157 ---~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------g~~i~iwd~~~~~~  213 (359)
                         ..|.|-||+.+.  +.+-.+..|.-....+.+.+||+.|+.+...                  -+ +.+.|..+|+.
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l  213 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL  213 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence               236777877664  3455677788788899999999998876431                  12 33444455554


Q ss_pred             EEEeecC--CCCcceEEEEecCCCCEEEEEc
Q 018248          214 LQEMRRG--AERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       214 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      +.+....  .+.-.|..++..+||+.++.+-
T Consensus       214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             hhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            4332221  2345677788888877666543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.08  E-value=0.0026  Score=35.83  Aligned_cols=31  Identities=16%  Similarity=0.424  Sum_probs=28.7

Q ss_pred             CcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ...|..++|+|...+||.++.+|.|.+++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4579999999999999999999999999994

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.91  E-value=0.24  Score=42.91  Aligned_cols=77  Identities=16%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-----------------CC-EEE
Q 018248          178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-----------------AQ-WLA  239 (359)
Q Consensus       178 ~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----------------~~-~l~  239 (359)
                      ...+.+++.+|++++.|+...-|. |.++|+.++..++.+++-.+ ..+.-+.....                 .. +++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYRd-Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYRD-AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCcc-ceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            445788999999999988878888 99999999888777765211 11111111100                 11 234


Q ss_pred             EEcCCCcEEEEEccCCC
Q 018248          240 ASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       240 ~~~~dg~i~iw~~~~~~  256 (359)
                      -+-..|.|.||.++.+.
T Consensus       385 yaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGP  401 (415)
T ss_pred             EeccCCeEEEEecCCCC
Confidence            45677888999988876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.90  E-value=0.00024  Score=62.02  Aligned_cols=159  Identities=13%  Similarity=0.083  Sum_probs=92.9

Q ss_pred             CCCCceEEEEEcc-CCCEEEEec-----CCceEEEEcCCC--cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            4 PDPITIHHLALNQ-DHGCFATGT-----ETGFRVYLSDPY--KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         4 ~h~~~v~~~~~s~-~g~~l~~~~-----d~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      ++-...++++|++ |...||+|-     |..+.|||+.+.  .......|..+-......++|.-+ ..+++++.   ..
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm---~s  175 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGM---TS  175 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC-cchhhccc---cc
Confidence            3456788999998 567788875     355999999865  222222222112334456666633 33333333   34


Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEec-ceeEEE--ecCeEEEEEc-cc-ceeeeeEeccC----CCceeeeeecCC
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRR-DRIVVV--LNQKVYVYNF-TD-LKLVDQIETVV----NPTGLCDVSQNA  146 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~--~d~~i~i~d~-~~-~~~~~~~~~~~----~~~~~~~~~~~~  146 (359)
                      ..+.++|++........-....+..+...| ...+++  .|+.|.+||. .. .+++..+....    .....++|+|..
T Consensus       176 r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  176 RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            789999976432211111334567788888 677777  8999999993 22 22222222222    236678889987


Q ss_pred             CccEEEecCCCCeeEEEEecC
Q 018248          147 GPMVMACPGLLKGQVRVEDYG  167 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~  167 (359)
                      .+.+... ....++|++++..
T Consensus       256 tglla~l-~RdS~tIrlydi~  275 (783)
T KOG1008|consen  256 TGLLAVL-SRDSITIRLYDIC  275 (783)
T ss_pred             cchhhhh-ccCcceEEEeccc
Confidence            6654444 4456777776554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.85  E-value=0.033  Score=48.02  Aligned_cols=82  Identities=16%  Similarity=0.235  Sum_probs=56.8

Q ss_pred             eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC------CCCcceEEEEecC-----CC---
Q 018248          170 KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG------AERAEIYSLAFSS-----NA---  235 (359)
Q Consensus       170 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~------~~~~~i~~~~~s~-----~~---  235 (359)
                      +...+....++|++++.|. =-++|.|..+|. +.|.|++....+..-...      .....++++.|+.     |+   
T Consensus        78 P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSD-IGFVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEE---S-SEEEEEE-B-TSEEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             chhheeccCCcEeEEecCC-CcEEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            3444556689999999974 449999999999 999999988877663221      1334688888872     33   


Q ss_pred             CEEEEEcCCCcEEEEEcc
Q 018248          236 QWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       236 ~~l~~~~~dg~i~iw~~~  253 (359)
                      -.|++|++.|.+.+|.+.
T Consensus       156 i~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             eEEEEEeCCCCEEEEEEe
Confidence            378889999999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.77  E-value=0.5  Score=44.58  Aligned_cols=228  Identities=13%  Similarity=0.194  Sum_probs=134.1

Q ss_pred             CEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-----------CCCeEEEEECCCcc
Q 018248           19 GCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-----------QSNKVMIWDDHENR   87 (359)
Q Consensus        19 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-----------~d~~i~iwd~~~~~   87 (359)
                      ..|+.+..+.+++..++.-++...+++.  -......++..+. ...+.+.+.+.           .-..++++|-++-+
T Consensus       685 d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~-sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~  761 (1096)
T KOG1897|consen  685 DSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQES-SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE  761 (1096)
T ss_pred             ceEEEecCCceEEEEecchhhcceeeec--CCCChhheEeccc-ceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence            4567777788888888766555555543  1222333333331 22222221111           12346788877777


Q ss_pred             EEeeeccC-----cceeEEEEecc-eeEEE-------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248           88 YLGELSFR-----SEVKNVRLRRD-RIVVV-------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        88 ~~~~~~~~-----~~v~~~~~~~~-~~~~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
                      .+...+..     ..+.+..|..| +.+++             ..|.|.++....++.++.+..+.-.-...++..-+. 
T Consensus       762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fng-  840 (1096)
T KOG1897|consen  762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNG-  840 (1096)
T ss_pred             EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCC-
Confidence            66665522     23445557766 44433             358899998866444444432222222333333222 


Q ss_pred             cEEEecCCCCeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC--CcEEEEeecCCCCcc
Q 018248          149 MVMACPGLLKGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD--GSLLQEMRRGAERAE  225 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~--~~~~~~~~~~~~~~~  225 (359)
                      .++|.-   ...|+++..+.+ .++.-..+..++..+.+.-.|..+++|..-++ +.+...+.  |... ++...-++.+
T Consensus       841 kllA~I---n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~W  915 (1096)
T KOG1897|consen  841 KLLAGI---NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNW  915 (1096)
T ss_pred             eEEEec---CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccc
Confidence            345543   558999776655 55555677888999999999999999998887 77655443  3333 3433446678


Q ss_pred             eEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+++.+-.+. .++.+..+|.+.+-..++..
T Consensus       916 mtaveil~~d-~ylgae~~gNlf~v~~d~~~  945 (1096)
T KOG1897|consen  916 MTAVEILDDD-TYLGAENSGNLFTVRKDSDA  945 (1096)
T ss_pred             eeeEEEecCc-eEEeecccccEEEEEecCCC
Confidence            8888886544 44556778888888777543

>PRK10115 protease 2; Provisional

Probab=96.76  E-value=0.5  Score=44.41  Aligned_cols=238  Identities=8%  Similarity=-0.003  Sum_probs=120.9

Q ss_pred             ceEEEEEccCCCEEEEec--CCc----eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC--CCCeEE
Q 018248            8 TIHHLALNQDHGCFATGT--ETG----FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH--QSNKVM   79 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~--d~~----i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~   79 (359)
                      .+..+.+||||++|+.+.  +|.    |++.|+.++.... ..+    ...-..++|.++++.+++......  ....|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-~~i----~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-ELL----DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-ccc----cCcceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            477789999999998876  232    7888888764321 222    122245888888888877764210  236788


Q ss_pred             EEECCCc--cEEeeec-cCccee-EEEEecceeEEE------ecCeEEEEEc--ccceeeeeEeccCCCceeeeeecCCC
Q 018248           80 IWDDHEN--RYLGELS-FRSEVK-NVRLRRDRIVVV------LNQKVYVYNF--TDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        80 iwd~~~~--~~~~~~~-~~~~v~-~~~~~~~~~~~~------~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      .+++.++  +....+. ...... ....+.++.+++      .++.+.+++.  .+++....+. ....... .+...++
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~  280 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHEY-SLDHYQH  280 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCEE-EEEeCCC
Confidence            8998887  3333343 222222 333344666554      5678888885  2333222222 2222222 2222334


Q ss_pred             ccEEEecC-CCCeeEEEEecC-CeeeEEeecc-c-ccccEEEEccCCcEEEEEeCCCCeEEE--EEcCCCcEEEEeecCC
Q 018248          148 PMVMACPG-LLKGQVRVEDYG-TKKSKYITAH-A-SRIASIAMTLDGRFVATASSKGTLIRV--FNTMDGSLLQEMRRGA  221 (359)
Q Consensus       148 ~~~l~~~g-~~d~~v~~~~~~-~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~~dg~~i~i--wd~~~~~~~~~~~~~~  221 (359)
                      .+++.+.. .....|...... ......+..+ . ..+..+.+. .+.++++...++. -++  ++..+ ..+..+... 
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~-~~l~~~~~~~-~~~~~l~~~-  356 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGL-TSLRQINRKT-REVIGIAFD-  356 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCE-EEEEEEcCCC-CceEEecCC-
Confidence            45554421 112222222222 2222344444 2 367777776 3345555555665 444  45433 334444311 


Q ss_pred             CCcceEEEEec--CCCC-EEEEEc---CCCcEEEEEccCCC
Q 018248          222 ERAEIYSLAFS--SNAQ-WLAASS---DKGTVHVFGLKVDS  256 (359)
Q Consensus       222 ~~~~i~~~~~s--~~~~-~l~~~~---~dg~i~iw~~~~~~  256 (359)
                      ....+..+.++  +++. ++++.+   .-+.+..+|+.+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            12233334444  4443 444333   23568888887654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.1  Score=39.70  Aligned_cols=100  Identities=9%  Similarity=0.049  Sum_probs=61.6

Q ss_pred             CCCEEEEec---CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec
Q 018248           17 DHGCFATGT---ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS   93 (359)
Q Consensus        17 ~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~   93 (359)
                      +|.++.+.+   ...|++|++.+++......+.   ...+..-.+...++.+.....   .++.-..+|..+-+++..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA---PDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC---CccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccc
Confidence            344454444   456999999999888777763   222222222333555555554   57899999999999999888


Q ss_pred             cCcceeEEEEecceeEEEecC--eEEEEEccc
Q 018248           94 FRSEVKNVRLRRDRIVVVLNQ--KVYVYNFTD  123 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~~~d~--~i~i~d~~~  123 (359)
                      .+++=+.++..... ++..||  +++.-|.++
T Consensus       129 y~GeGWgLt~d~~~-LimsdGsatL~frdP~t  159 (262)
T COG3823         129 YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKT  159 (262)
T ss_pred             cCCcceeeecCCcc-eEeeCCceEEEecCHHH
Confidence            77777776654333 233444  344444443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.73  E-value=0.22  Score=39.88  Aligned_cols=178  Identities=12%  Similarity=0.114  Sum_probs=102.6

Q ss_pred             eEEEEEccCCCEEEEec-C--CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            9 IHHLALNQDHGCFATGT-E--TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d--~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ...+.|..+|.++-+.+ -  ..|+.+|+++++......+.    .....=.+..-++.+...+.   .++...+||..+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----~~~FgEGit~~~d~l~qLTW---k~~~~f~yd~~t  119 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP----PRYFGEGITILGDKLYQLTW---KEGTGFVYDPNT  119 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T----TT--EEEEEEETTEEEEEES---SSSEEEEEETTT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC----ccccceeEEEECCEEEEEEe---cCCeEEEEcccc
Confidence            45677777787775555 3  46999999998877666664    22222222223556665665   569999999999


Q ss_pred             ccEEeeeccCcceeEEEEecceeEEEec--CeEEEEEcccceeeeeEeccCC--C---ceeeeeecCCCccEEEecCCCC
Q 018248           86 NRYLGELSFRSEVKNVRLRRDRIVVVLN--QKVYVYNFTDLKLVDQIETVVN--P---TGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      -+.+.++..+.+=+.++.. +..++..|  ..|+.+|..+.+....+.....  +   .+-+.+. +  +.+.|-.=..|
T Consensus       120 l~~~~~~~y~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~--G~IyANVW~td  195 (264)
T PF05096_consen  120 LKKIGTFPYPGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N--GKIYANVWQTD  195 (264)
T ss_dssp             TEEEEEEE-SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T--TEEEEEETTSS
T ss_pred             ceEEEEEecCCcceEEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c--CEEEEEeCCCC
Confidence            9999999877777778733 22333344  5788888877776666654322  1   2223332 2  23344333456


Q ss_pred             eeEEEEecCCeeeEEeec---------------ccccccEEEEccCCcEEEEEe
Q 018248          159 GQVRVEDYGTKKSKYITA---------------HASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~---------------~~~~i~~~~~s~~~~~l~~~~  197 (359)
                      ..++|+..++.....+.-               ...-.+.||+.|....|...+
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            666667777766554421               124578999988766554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.016  Score=54.39  Aligned_cols=67  Identities=16%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          189 DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       189 ~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      .+..++.|+..|. +-..|.... .-.-..+....++|++++|+.+|+.++.|-.+|.|.+||+..++.
T Consensus        98 ~~~~ivi~Ts~gh-vl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGH-VLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI  164 (1206)
T ss_pred             eeeeEEEEcCchh-hhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence            4557888988888 988887543 111122222457999999999999999999999999999998763

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.55  E-value=0.25  Score=38.37  Aligned_cols=192  Identities=15%  Similarity=0.201  Sum_probs=104.5

Q ss_pred             CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc---CCEEEEEecCCCCCCeEEEEECC--CccEEeee---c---c
Q 018248           26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR---SNIICLVNSGPHQSNKVMIWDDH--ENRYLGEL---S---F   94 (359)
Q Consensus        26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~---~---~   94 (359)
                      .+.|.-||.... ...+..++    ++...-.+.|-   +...++ +.+  ..-.|--||-.  .....+++   +   .
T Consensus        36 ag~v~r~D~~qn-~v~ra~ie----~p~~ag~ilpv~~~~q~~~v-~~G--~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   36 AGEVHRYDIEQN-KVYRAKIE----GPPSAGFILPVEGGPQEFAV-GCG--SKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             cCceehhhhhhh-heEEEEEe----cCcceeEEEEecCCCceEEE-eec--ceEEEEEcccccceeeeeeeccccCchHH
Confidence            677777888753 33444442    33222122221   223332 322  22445557632  22333332   1   2


Q ss_pred             CcceeEEEEecceeEEE------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           95 RSEVKNVRLRRDRIVVV------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      ....++-..+|+|++.+            ..|.++.|-. .++ +..+...-.--+.++|..+.+.++..  .+.+-+|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~-v~~i~~~v~IsNgl~Wd~d~K~fY~i--Dsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQ-VELIWNCVGISNGLAWDSDAKKFYYI--DSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCC-ceeeehhccCCccccccccCcEEEEE--ccCceEEe
Confidence            34556677889998876            2456666654 222 22222222223456777666654444  44566666


Q ss_pred             EEecCC--------eeeEEeec----ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          163 VEDYGT--------KKSKYITA----HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       163 ~~~~~~--------~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                      -|+.+.        +.+..++.    .....-.+++..+|++.++.-..++ |...|..+|+.+.+++.  ....|++++
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl--Pt~qitscc  260 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL--PTPQITSCC  260 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc--CCCceEEEE
Confidence            666332        11222221    1112234566667887777777777 99999999999999987  456899999


Q ss_pred             ec
Q 018248          231 FS  232 (359)
Q Consensus       231 ~s  232 (359)
                      |-
T Consensus       261 Fg  262 (310)
T KOG4499|consen  261 FG  262 (310)
T ss_pred             ec
Confidence            96

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.50  E-value=0.0099  Score=45.59  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             EEecCCCCeeEEEEecCC--eeeEEeecccccccEE-EEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-cce
Q 018248          151 MACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI-AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER-AEI  226 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~i  226 (359)
                      +++ |..+|.|++|....  ............|.++ .--.++.+..+++.+|. |+.|++.-++.+...-.  |. .++
T Consensus        73 ~~v-G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~  148 (238)
T KOG2444|consen   73 LMV-GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESG  148 (238)
T ss_pred             EEe-ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCc
Confidence            454 77899999966652  2222222222233222 22235557889999999 99999988777655543  44 456


Q ss_pred             EEEEecCCCCEEEEE--cCCCcEEEEEccCCCC
Q 018248          227 YSLAFSSNAQWLAAS--SDKGTVHVFGLKVDSG  257 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~  257 (359)
                      ..+..+..++.|+.+  +.|..++.|++..-..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence            666666667777777  7888888888877553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.47  E-value=0.4  Score=39.70  Aligned_cols=236  Identities=15%  Similarity=0.135  Sum_probs=102.5

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCC-ceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRG-GTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +-..++..|.|..+..-+++|..+.  |+....+.............. .....++.+.++...+++    ..+ +.+..
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG----~~g-~ll~T   86 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG----EPG-LLLHT   86 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE----ETT-EEEEE
T ss_pred             CCCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc----CCc-eEEEe
Confidence            4467899999997777788887764  455554443332221100111 233334444455555555    234 33333


Q ss_pred             CCCccEEeeec----cCcceeEEEEecceeEE-E-ecCeEEEEEccc-ceeeeeE-eccCCCceeeeeecCCCccEEEec
Q 018248           83 DHENRYLGELS----FRSEVKNVRLRRDRIVV-V-LNQKVYVYNFTD-LKLVDQI-ETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        83 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~-~-~d~~i~i~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ...|+.-..+.    .+.....+....++... + ..|.  ||...+ ++.-+.+ ......+..+..++++.  ++++ 
T Consensus        87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vav-  161 (302)
T PF14870_consen   87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGR--YVAV-  161 (302)
T ss_dssp             SSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS---EEEE-
T ss_pred             cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCc--EEEE-
Confidence            34454433332    23333444443333333 3 3333  333322 3222222 22233344444555554  4655 


Q ss_pred             CCCCeeEEE-EecCCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEc-CCCcEEEE--eecCCCCcceEEE
Q 018248          155 GLLKGQVRV-EDYGTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNT-MDGSLLQE--MRRGAERAEIYSL  229 (359)
Q Consensus       155 g~~d~~v~~-~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~-~~~~~~~~--~~~~~~~~~i~~~  229 (359)
                      + ..|.+.+ |+.....-... +.....|.+|.|+|++.+.+.+ ..|. |++=+. ...+.-..  .......-.+.++
T Consensus       162 s-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~  238 (302)
T PF14870_consen  162 S-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDL  238 (302)
T ss_dssp             E-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred             E-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEE
Confidence            3 4777777 66554322222 3346789999999998876655 6666 776651 22222211  1111122248899


Q ss_pred             EecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          230 AFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +|.+++...++|+ .|. .+...+.++
T Consensus       239 a~~~~~~~wa~gg-~G~-l~~S~DgGk  263 (302)
T PF14870_consen  239 AYRPPNEIWAVGG-SGT-LLVSTDGGK  263 (302)
T ss_dssp             EESSSS-EEEEES-TT--EEEESSTTS
T ss_pred             EecCCCCEEEEeC-Ccc-EEEeCCCCc
Confidence            9999888777665 443 333444444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.34  E-value=0.55  Score=39.92  Aligned_cols=198  Identities=8%  Similarity=-0.022  Sum_probs=91.0

Q ss_pred             EEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC-cceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec
Q 018248           57 SMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR-SEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      +|..+++.+++.+... ....+.+.|+.+++..+.-... .......++|+...++   .+..|+-.|+++.+....+..
T Consensus        42 ~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            4566778888877543 4678888899998877665533 3344566778776654   456899999988876655555


Q ss_pred             cCCCceeeeeecCCCccEEEecC--CC--------------------CeeEEEEecCCeeeEEeecccccccEEEEccCC
Q 018248          133 VVNPTGLCDVSQNAGPMVMACPG--LL--------------------KGQVRVEDYGTKKSKYITAHASRIASIAMTLDG  190 (359)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~g--~~--------------------d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  190 (359)
                      +...+....+..+.+...++..-  ..                    .+.+.|+.. ....+.+..-...+.-+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~-tG~~~~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK-TGERKVVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT-T--EEEEEEESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC-CCceeEEEecCccccCcccCCCC
Confidence            55555445554443333332110  00                    122222333 33444454456678889999965


Q ss_pred             cE-EEEEeC---CCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEecCCCCEEEEEc-----CCCcEEEEEccCCC
Q 018248          191 RF-VATASS---KGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS-----DKGTVHVFGLKVDS  256 (359)
Q Consensus       191 ~~-l~~~~~---dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~  256 (359)
                      .- |+-|-+   +..--+||-+. .+.....+..+.....+..=-|.|||..|.--+     .+..|.-+|+.+++
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            54 444432   11002455443 344444444332223444556889998665422     12335555555543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.33  E-value=0.99  Score=42.74  Aligned_cols=279  Identities=13%  Similarity=0.137  Sum_probs=143.9

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcC--CCcceeee--ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSD--PYKPIMRR--DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~--~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +..|.-..|-.|..+|.++. ||.+.-|.++  ++...-.+  .+-   ..++..-.++.....-+++.    .|.-..+
T Consensus       583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG---t~P~~Lr~f~sk~~t~vfa~----sdrP~vi  655 (1096)
T KOG1897|consen  583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG---TQPISLRTFSSKSRTAVFAL----SDRPTVI  655 (1096)
T ss_pred             chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccC---CCCcEEEEEeeCCceEEEEe----CCCCEEE
Confidence            44566666767788888888 9987666554  43322222  231   45555556665555555555    3555666


Q ss_pred             EECCCccEEee-eccCcceeEE-EEe----cceeEEEecCeEEEEEcccceee--eeEeccCCCceeeeeecCCCccEEE
Q 018248           81 WDDHENRYLGE-LSFRSEVKNV-RLR----RDRIVVVLNQKVYVYNFTDLKLV--DQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        81 wd~~~~~~~~~-~~~~~~v~~~-~~~----~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      |. .+++.... +..+ .+..+ .|+    |++..++..+.+++..+..-+.+  +++..+.. ...+++.+. +..+.+
T Consensus       656 Y~-~n~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~-prrI~~q~~-sl~~~v  731 (1096)
T KOG1897|consen  656 YS-SNGKLVYSPLSLK-EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGES-PRRICYQES-SLTFGV  731 (1096)
T ss_pred             Ee-cCCcEEEeccchH-HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCC-hhheEeccc-ceEEEE
Confidence            65 33433322 2211 12111 122    34455557788888776543332  22332222 223444331 111111


Q ss_pred             ec------C---CCCeeEEE-EecCCeeeEEeecccc-------cccEEEEccC-CcEEEEEeC----------CCCeEE
Q 018248          153 CP------G---LLKGQVRV-EDYGTKKSKYITAHAS-------RIASIAMTLD-GRFVATASS----------KGTLIR  204 (359)
Q Consensus       153 ~~------g---~~d~~v~~-~~~~~~~~~~~~~~~~-------~i~~~~~s~~-~~~l~~~~~----------dg~~i~  204 (359)
                      .+      +   .....+.. ...+.+....+..|+-       .+.++.|..| +.++++|..          .|. |.
T Consensus       732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR-Ii  810 (1096)
T KOG1897|consen  732 LSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR-II  810 (1096)
T ss_pred             EecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce-EE
Confidence            10      0   01111221 2222333333433322       4555668777 677877753          467 88


Q ss_pred             EEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          205 VFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                      +|....++.+.......-.+.+.++.. -+|++||.-  ...|++|++.+.+....                        
T Consensus       811 vfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~------------------------  863 (1096)
T KOG1897|consen  811 VFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRI------------------------  863 (1096)
T ss_pred             EEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehh------------------------
Confidence            888777444444332223455555543 268887754  45799999988753210                        


Q ss_pred             EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                                +.        -+..++..+...-.|..+++|..-+++.+..+..++|
T Consensus       864 ----------e~--------~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg  902 (1096)
T KOG1897|consen  864 ----------EC--------NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG  902 (1096)
T ss_pred             ----------hh--------cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence                      00        0113445666666777888888877777777766543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.22  E-value=0.48  Score=38.02  Aligned_cols=184  Identities=11%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             CCCceeEEEEec-cCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcce--eEEEEecceeEEE--ecCeEEEEEccc
Q 018248           49 PRGGTQLVSMLF-RSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEV--KNVRLRRDRIVVV--LNQKVYVYNFTD  123 (359)
Q Consensus        49 h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~--~d~~i~i~d~~~  123 (359)
                      |......-.+.+ +++.+.-.+ |.+....|+.+|+.+++.......+...  ..+....+..+.+  .++...+||..+
T Consensus        41 Hd~~aFTQGL~~~~~g~LyEST-G~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   41 HDPTAFTQGLEFLDDGTLYEST-GLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             --TT-EEEEEEEEETTEEEEEE-CSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCCcccCccEEecCCCEEEEeC-CCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcccc
Confidence            555544444444 334444444 3334568999999999988877644333  3566666665555  899999999999


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEEeecc--c---ccccEEEEccCCcEEEEEe
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKYITAH--A---SRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~~~~~--~---~~i~~~~~s~~~~~l~~~~  197 (359)
                      .+.+.++.-.. .-+-++  .+++. ++.+-|  ...++..+. +.+..+.+...  .   ..++.+.+- +|...|=.=
T Consensus       120 l~~~~~~~y~~-EGWGLt--~dg~~-Li~SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW  192 (264)
T PF05096_consen  120 LKKIGTFPYPG-EGWGLT--SDGKR-LIMSDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW  192 (264)
T ss_dssp             TEEEEEEE-SS-S--EEE--ECSSC-EEEE-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred             ceEEEEEecCC-cceEEE--cCCCE-EEEECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence            99988886543 233333  56665 344423  335555443 33444443322  1   235556664 676666555


Q ss_pred             CCCCeEEEEEcCCCcEEEEeecC-------------CCCcceEEEEecCCCCEE-EEE
Q 018248          198 SKGTLIRVFNTMDGSLLQEMRRG-------------AERAEIYSLAFSSNAQWL-AAS  241 (359)
Q Consensus       198 ~dg~~i~iwd~~~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l-~~~  241 (359)
                      .... |...|..+|+....+...             ....-.+.+++.|..+.| +||
T Consensus       193 ~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  193 QTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5556 888899999887765310             012457899998876654 554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=0.6  Score=37.59  Aligned_cols=223  Identities=17%  Similarity=0.184  Sum_probs=119.7

Q ss_pred             eEEEEEccCC-CEEEEec-CCc-eEEEEcCCCcceeeeecc-cCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEEEC
Q 018248            9 IHHLALNQDH-GCFATGT-ETG-FRVYLSDPYKPIMRRDFD-RNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIWDD   83 (359)
Q Consensus         9 v~~~~~s~~g-~~l~~~~-d~~-i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~   83 (359)
                      -..|+|+|.- .-++.+. -|+ ..++|.+..++.....-. .-|-  -.--.+++++.++...-++.. ..|.|-+||.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf--yGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF--YGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee--ecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            3456677643 3455555 444 567887766554332211 0010  011235666666554332211 4588999997


Q ss_pred             CCc-cEEeeec-cCcceeEEEEecceeEEE-ecCeEEEE-Ec-------ccce------------eeeeEecc----CCC
Q 018248           84 HEN-RYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVY-NF-------TDLK------------LVDQIETV----VNP  136 (359)
Q Consensus        84 ~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~-d~-------~~~~------------~~~~~~~~----~~~  136 (359)
                      ..+ +.+.++. |.-....+.+.+||+.++ .+|-|... |.       .+.+            .+.+....    ...
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence            754 5556665 666778899999999988 77766665 22       2222            22111111    111


Q ss_pred             ceeeeeecCCCccEEEecCCCCeeEEE-EecC---------------CeeeEEee-------cccccccEEEEccCCcEE
Q 018248          137 TGLCDVSQNAGPMVMACPGLLKGQVRV-EDYG---------------TKKSKYIT-------AHASRIASIAMTLDGRFV  193 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~---------------~~~~~~~~-------~~~~~i~~~~~s~~~~~l  193 (359)
                      +.-++..+             ||+|.. -...               +++++.+.       .-...|-+++.+.+..++
T Consensus       228 iRHld~g~-------------dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV  294 (366)
T COG3490         228 IRHLDIGR-------------DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV  294 (366)
T ss_pred             eeeeeeCC-------------CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence            22222222             344333 1111               22222221       123467788888777777


Q ss_pred             EEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          194 ATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       194 ~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      +..+-.|....+||..+|..+..-...    ....++-  ...-++..+.+|.+.++.-
T Consensus       295 ~lTSP~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         295 ALTSPRGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EEecCCCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEeccc
Confidence            777776664789999999887655431    2223332  3334555567888888743

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.04  E-value=0.36  Score=44.04  Aligned_cols=74  Identities=19%  Similarity=0.168  Sum_probs=51.0

Q ss_pred             cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec--CCCCEEEEEcCCCcEEEEEcc
Q 018248          178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS--SNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       178 ~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      -..+.-+.-|.-++ +|....++..+.|||.+.+....+-.- .....|.++.|.  |||+.+++.+....|.++--.
T Consensus        29 i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   29 ISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             CCCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            33445555555444 444455555599999988875544332 135789999986  799999999999999998653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.79  E-value=0.02  Score=52.76  Aligned_cols=141  Identities=18%  Similarity=0.278  Sum_probs=79.5

Q ss_pred             CCeEEEEECCCccEEeee-c-cCcceeEEEEecc-eeEEE-ecCeEEEEEcc--cceeeeeE-----eccCCCceeeeee
Q 018248           75 SNKVMIWDDHENRYLGEL-S-FRSEVKNVRLRRD-RIVVV-LNQKVYVYNFT--DLKLVDQI-----ETVVNPTGLCDVS  143 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~-~~~~~-~d~~i~i~d~~--~~~~~~~~-----~~~~~~~~~~~~~  143 (359)
                      .+-+++-+..+...-..+ + +.+.+-.++|... ...+. .-|.+.+|++.  .|+....+     .........+.|+
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wc  189 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWC  189 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeec
Confidence            355666654433211122 2 5677777777432 11222 45778888873  34433332     2233344556666


Q ss_pred             cCCC-ccEEEecCCCCeeEEE--EecCCeeeEEeecccccccEE-----------EEccCCcEEEEEeCCCCeEEEEEcC
Q 018248          144 QNAG-PMVMACPGLLKGQVRV--EDYGTKKSKYITAHASRIASI-----------AMTLDGRFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       144 ~~~~-~~~l~~~g~~d~~v~~--~~~~~~~~~~~~~~~~~i~~~-----------~~s~~~~~l~~~~~dg~~i~iwd~~  209 (359)
                      |--- ..++.+ +..++.+++  |+....  ..+.+|...+..+           .+||||+.++.++.||. ++.|.+.
T Consensus       190 p~~~~~~~ic~-~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy  265 (1283)
T KOG1916|consen  190 PIAVNKVYICY-GLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY  265 (1283)
T ss_pred             ccccccceeee-ccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence            5322 234554 778889998  444333  4445566555443           36899999999999998 8888653


Q ss_pred             -----CCcEEEEeec
Q 018248          210 -----DGSLLQEMRR  219 (359)
Q Consensus       210 -----~~~~~~~~~~  219 (359)
                           ...++...+.
T Consensus       266 i~g~~~~rclhewkp  280 (1283)
T KOG1916|consen  266 ITGKIVHRCLHEWKP  280 (1283)
T ss_pred             eeccccHhhhhccCC
Confidence                 2344555554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.72  E-value=0.42  Score=41.72  Aligned_cols=143  Identities=13%  Similarity=0.180  Sum_probs=85.6

Q ss_pred             cceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC-------ccEEEecCCCCeeEEEEec-CCeeeE
Q 018248          105 RDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG-------PMVMACPGLLKGQVRVEDY-GTKKSK  172 (359)
Q Consensus       105 ~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~g~~d~~v~~~~~-~~~~~~  172 (359)
                      .+..++.    ....++-.|++.|+.+.....+...  .+.+.|..+       +.++.  -+..+..+|+.+ ++..+.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvG--lS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVG--LSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEe--ecccceEEecccccCCcee
Confidence            3444554    3446788888999999988877653  677777543       22222  223455555333 333333


Q ss_pred             EeecccccccEEEEcc----CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          173 YITAHASRIASIAMTL----DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       173 ~~~~~~~~i~~~~~s~----~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      ... ....++.-.||.    ..-++|+++..|. |++||.-.......+++  -...|..+..+.+|+++++.+. ..+.
T Consensus       553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yll  627 (776)
T COG5167         553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYLL  627 (776)
T ss_pred             eee-ehhccccccccccccccCceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceEE
Confidence            222 222233333332    3348999999999 99999433222223332  3457889999999998876664 4688


Q ss_pred             EEEccCCC
Q 018248          249 VFGLKVDS  256 (359)
Q Consensus       249 iw~~~~~~  256 (359)
                      +-|+.-..
T Consensus       628 L~d~~ik~  635 (776)
T COG5167         628 LTDVPIKY  635 (776)
T ss_pred             EEeccccc
Confidence            88876543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.60  E-value=2.2  Score=40.60  Aligned_cols=111  Identities=12%  Similarity=0.032  Sum_probs=66.3

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCC-----ceeEEEEe----------------ccCCEEEEEecCCCCC
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRG-----GTQLVSML----------------FRSNIICLVNSGPHQS   75 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~-----~v~~~~~~----------------~~~~~~~~~~~~~~~d   75 (359)
                      +..|.+++ ++.|.-.|.++++++...........     ....+.+.                .....+++.+    .|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T----~D  269 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT----SD  269 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec----CC
Confidence            34555556 88888889988888777655310000     00111111                1223455544    68


Q ss_pred             CeEEEEECCCccEEeeeccCccee-------------EEEEec---ceeEEE--e----------cCeEEEEEcccceee
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVK-------------NVRLRR---DRIVVV--L----------NQKVYVYNFTDLKLV  127 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~--~----------d~~i~i~d~~~~~~~  127 (359)
                      +.+.-.|.++|+....+..++.|.             .+.-.|   ++.+++  .          +|.|+-+|.++|+.+
T Consensus       270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999999999987765433321             011111   344444  1          578999999999998


Q ss_pred             eeEec
Q 018248          128 DQIET  132 (359)
Q Consensus       128 ~~~~~  132 (359)
                      ..+..
T Consensus       350 W~~~~  354 (764)
T TIGR03074       350 WAWDP  354 (764)
T ss_pred             eEEec
Confidence            88753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.60  E-value=0.54  Score=38.03  Aligned_cols=80  Identities=14%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          175 TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       175 ~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .+-...+.++.|+|+.+.|++...... -.|+=...|+.+.++.... -.....+.+..++++.++--.++.+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~-~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPA-AIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCc-eEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            344556999999999998888887777 6677667899998887532 23556788888898888888889999999987


Q ss_pred             CC
Q 018248          255 DS  256 (359)
Q Consensus       255 ~~  256 (359)
                      ..
T Consensus       160 ~t  161 (316)
T COG3204         160 DT  161 (316)
T ss_pred             Cc
Confidence            65

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.56  E-value=0.83  Score=40.73  Aligned_cols=147  Identities=10%  Similarity=0.057  Sum_probs=84.5

Q ss_pred             cceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC---CccEEEecCCCCeeEEEEecC
Q 018248           96 SEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA---GPMVMACPGLLKGQVRVEDYG  167 (359)
Q Consensus        96 ~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~g~~d~~v~~~~~~  167 (359)
                      .++..++|....+.+.     .+|.+++=|   .+.+..|    ..+..+.|+|-.   ...+||..  ....|.+|...
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQ--HkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQ--HKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEe--ccceEEEEEec
Confidence            4677888875544444     455554433   2233333    335567777753   22456653  56788889875


Q ss_pred             Cee------eEEeecc-----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC--cEEEEeecCCCCcceEEEEecCC
Q 018248          168 TKK------SKYITAH-----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG--SLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       168 ~~~------~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      ...      +.....+     .--...+.|+|....|++-..... =.+++++..  .....++   ..+.|.|.+|.+|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~---~~G~IhCACWT~D  166 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK---TSGLIHCACWTKD  166 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc---CCceEEEEEecCc
Confidence            311      1111111     112346789999988877665543 345555433  3333444   4578999999999


Q ss_pred             CCEEEEEcC-CCcEEEEEccCC
Q 018248          235 AQWLAASSD-KGTVHVFGLKVD  255 (359)
Q Consensus       235 ~~~l~~~~~-dg~i~iw~~~~~  255 (359)
                      |+.|+.+-. .=.-+|||-...
T Consensus       167 G~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  167 GQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CCEEEEEeCCeEEEEEecCchh
Confidence            998876543 334677875443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.52  E-value=0.5  Score=43.17  Aligned_cols=104  Identities=8%  Similarity=0.108  Sum_probs=71.9

Q ss_pred             EEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC--CEEEEEecCCCCCCeEEEEECC----
Q 018248           12 LALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS--NIICLVNSGPHQSNKVMIWDDH----   84 (359)
Q Consensus        12 ~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~d~~i~iwd~~----   84 (359)
                      +.-|.-++.-++-+ ...+.|||...+...+...+  ...+.|..+.|...+  +.++.++    ..+.|.++.-.    
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVG----f~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVG----FPHHVLLYTQLRYDY  108 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEE----cCcEEEEEEccchhh
Confidence            33344444444444 55699999998877777776  356788888887544  5556666    67899988531    


Q ss_pred             -----CccEEeeec---c-CcceeEEEEecceeEEE-ecCeEEEEEc
Q 018248           85 -----ENRYLGELS---F-RSEVKNVRLRRDRIVVV-LNQKVYVYNF  121 (359)
Q Consensus        85 -----~~~~~~~~~---~-~~~v~~~~~~~~~~~~~-~d~~i~i~d~  121 (359)
                           +-..+..+.   + +.+|.+..|.++|.+++ .++.+.|+|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence                 113344443   3 36899999999999998 9999999985

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.42  E-value=0.079  Score=28.89  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=26.4

Q ss_pred             cceEEEEecCCC---CEEEEEcCCCcEEEEEccCC
Q 018248          224 AEIYSLAFSSNA---QWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       224 ~~i~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~  255 (359)
                      +.|.++.|||+.   .+|+.+-..|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368899999854   48888888899999999963

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.38  E-value=1.1  Score=42.11  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=55.1

Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccC-CCCCceeeeeEeeeecceEEecccceeE
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSS-KNSSAISSFRFIRGVLPKYFSSKWSMAQ  302 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (359)
                      -.|..+.++|+|++|+..|..| |.|-.+...-..             .+. .+.......... .+-..++...     
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~-------------~~~~~~g~~~i~Crt~-~v~~~~~~~~-----  144 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGK-------------NGEFEDGKKEINCRTV-PVDERFFTSN-----  144 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCc-------------cccccCCCcceeEEEE-EechhhccCC-----
Confidence            3688999999999999998866 677666432100             000 000000000000 0011122111     


Q ss_pred             EeecCCcEEEeeeccc---CCEEEEEecCCeEEEEEeCC
Q 018248          303 FRLPENVQYLVGFGRQ---NNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       303 ~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~v~~~~~  338 (359)
                         +...|..+.|+|.   +..|++-++|+++++|++..
T Consensus       145 ---~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 ---SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             ---CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence               2356788999986   58999999999999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.19  E-value=2.6  Score=38.93  Aligned_cols=208  Identities=14%  Similarity=0.140  Sum_probs=103.9

Q ss_pred             EEccCCCEEEEec-C----------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248           13 ALNQDHGCFATGT-E----------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus        13 ~~s~~g~~l~~~~-d----------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +..|-|.-+|+.- +          -.|+||+... .......+.  | +.+-.+.|+-+. .++++.    .+|++.+|
T Consensus        39 a~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG-~lL~~~~w~--~-~~lI~mgWs~~e-eLI~v~----k~g~v~Vy  109 (829)
T KOG2280|consen   39 ACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISG-QLLGRILWK--H-GELIGMGWSDDE-ELICVQ----KDGTVHVY  109 (829)
T ss_pred             EecccCCceEEEecccccccccccceeEEEEeccc-cchHHHHhc--C-CCeeeecccCCc-eEEEEe----ccceEEEe
Confidence            3445555555554 2          1267777653 333223332  2 244444554333 344445    68999999


Q ss_pred             ECCCccEEee--e--c-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec-cCC--CceeeeeecCCC-ccEE
Q 018248           82 DDHENRYLGE--L--S-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET-VVN--PTGLCDVSQNAG-PMVM  151 (359)
Q Consensus        82 d~~~~~~~~~--~--~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~--~~~~~~~~~~~~-~~~l  151 (359)
                      ++.. +.+..  .  . ....|....+..+|-.+. .+|++.+-+-.....+..++. +..  +..+....+.+. ...+
T Consensus       110 ~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l  188 (829)
T KOG2280|consen  110 GLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTIL  188 (829)
T ss_pred             ecch-hhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeE
Confidence            9643 33333  2  1 334566666666777766 777766655322222233322 111  112222222221 1111


Q ss_pred             EecCCCCeeEEEEecC--CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248          152 ACPGLLKGQVRVEDYG--TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSL  229 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  229 (359)
                      +-..-..+. .+...+  ......+......+..+..||+.++|+--...|. |.+-+....+.+.++....+ .+...+
T Consensus       189 l~v~~~v~~-~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~-~~p~qm  265 (829)
T KOG2280|consen  189 LDVDVAVGL-HICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDH-DPPKQM  265 (829)
T ss_pred             Eeechhhhh-cccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCC-CchHhc
Confidence            110100010 001111  1112222222456788999999999999999999 99988887777777764323 233356


Q ss_pred             EecC
Q 018248          230 AFSS  233 (359)
Q Consensus       230 ~~s~  233 (359)
                      +|.-
T Consensus       266 ~Wcg  269 (829)
T KOG2280|consen  266 AWCG  269 (829)
T ss_pred             eeec
Confidence            6643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.15  E-value=0.11  Score=28.35  Aligned_cols=32  Identities=13%  Similarity=0.268  Sum_probs=25.1

Q ss_pred             ccccEEEEccCCc---EEEEEeCCCCeEEEEEcCCC
Q 018248          179 SRIASIAMTLDGR---FVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       179 ~~i~~~~~s~~~~---~l~~~~~dg~~i~iwd~~~~  211 (359)
                      +.+.+++|+|+..   +|+.+-..|. |.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence            3578999998544   7777777777 999999853

It contains a characteristic DLL sequence motif.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=95.01  E-value=0.49  Score=35.78  Aligned_cols=31  Identities=3%  Similarity=-0.022  Sum_probs=25.6

Q ss_pred             CcEEEeeecccC------CEEEEEecCCeEEEEEeCC
Q 018248          308 NVQYLVGFGRQN------NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       308 ~~v~~~~~s~~~------~~l~~~~~dg~i~v~~~~~  338 (359)
                      ..+..++|||-|      ..|++.+.+|.|.+|.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478899999954      5799999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.97  E-value=3.7  Score=39.55  Aligned_cols=182  Identities=13%  Similarity=0.045  Sum_probs=98.8

Q ss_pred             EEEEEcccceeeeeEeccCC----CceeeeeecCCCccEEEecCCC----------CeeEEEEe--cCCeeeEEeecccc
Q 018248          116 VYVYNFTDLKLVDQIETVVN----PTGLCDVSQNAGPMVMACPGLL----------KGQVRVED--YGTKKSKYITAHAS  179 (359)
Q Consensus       116 i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~g~~----------d~~v~~~~--~~~~~~~~~~~~~~  179 (359)
                      |++.|..+++.+..++...+    .+..+.|+..+...++++.+..          +|.++.+.  .+++.+..+..-.-
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            77777777776666654333    1233445544444233332211          22333321  22232222221111


Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP  259 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  259 (359)
                      +-.-.++.|...++.+|-.+ . +++||+...++++..+...-+..|..+.+  .+..++.|...-.+.++..+..... 
T Consensus       935 ~~~v~Ai~~f~~~~LagvG~-~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~- 1009 (1205)
T KOG1898|consen  935 PGPVGAICPFQGRVLAGVGR-F-LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ- 1009 (1205)
T ss_pred             CccceEEeccCCEEEEeccc-E-EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe-
Confidence            12234556766666655433 4 99999988888776665434567888887  4667888876666777666654421 


Q ss_pred             CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                                    +..+.+..        -..+|+++.+- |-..++.+..=|.+++-+++++
T Consensus      1010 ------------------------------l~~fadD~--------~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1010 ------------------------------LIVFADDP--------VPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             ------------------------------EEEEeCCC--------ccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence                                          11111110        01244544443 4467888888899999998876


Q ss_pred             CC
Q 018248          340 KG  341 (359)
Q Consensus       340 ~~  341 (359)
                      ..
T Consensus      1051 ~~ 1052 (1205)
T KOG1898|consen 1051 VS 1052 (1205)
T ss_pred             ch
Confidence            43

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.84  E-value=0.64  Score=43.60  Aligned_cols=76  Identities=13%  Similarity=0.249  Sum_probs=53.4

Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCC----------CcEE---EEee------cCCCCcceEEEEecCC---CC
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMD----------GSLL---QEMR------RGAERAEIYSLAFSSN---AQ  236 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~----------~~~~---~~~~------~~~~~~~i~~~~~s~~---~~  236 (359)
                      -.|..+.++|+|++|+..+..|  |.|-.+..          |+..   +++.      .......|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4688899999999999998877  55555431          1111   1111      1113457899999996   47


Q ss_pred             EEEEEcCCCcEEEEEccCCC
Q 018248          237 WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .|+.-+.|+++|+||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888999999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=94.83  E-value=3.7  Score=38.85  Aligned_cols=198  Identities=9%  Similarity=-0.004  Sum_probs=99.9

Q ss_pred             eeEEEEeccCCEEEEEecCCC-CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---e--c----CeEEEEEcc
Q 018248           53 TQLVSMLFRSNIICLVNSGPH-QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---L--N----QKVYVYNFT  122 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~--d----~~i~i~d~~  122 (359)
                      +..+.++++++.+++...... ....|++.|+.+++.+...- ...-..++|.+|+..++   .  +    ..|+.+++.
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            555678888888877643211 34568899998886432221 11114589999886555   2  2    378888887


Q ss_pred             cc--eeeeeEeccCCCceeeeeec-CCCccEEEecCCCCeeEEEEec---CCeeeEEeecccccccEEEEccCCcEEEEE
Q 018248          123 DL--KLVDQIETVVNPTGLCDVSQ-NAGPMVMACPGLLKGQVRVEDY---GTKKSKYITAHASRIASIAMTLDGRFVATA  196 (359)
Q Consensus       123 ~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~d~~v~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  196 (359)
                      ++  +....+...........+.. +++.+++.+....++.+.+++.   .+.. ..+..+...+..-..+..+.+.+..
T Consensus       208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ly~~t  286 (686)
T PRK10115        208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLDHYQHRFYLRS  286 (686)
T ss_pred             CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEEeCCCEEEEEE
Confidence            76  33334443333333233333 6666555555555667777553   2222 2222222222211122333333333


Q ss_pred             eCCC-C-eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          197 SSKG-T-LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       197 ~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ..++ . .|...++.+......+..+.....|..+.++ ...++++...+|.-+++-+.
T Consensus       287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        287 NRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             cCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            2221 2 0333344321112233322123468888887 33456666667776665554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.77  E-value=0.3  Score=38.43  Aligned_cols=69  Identities=17%  Similarity=0.279  Sum_probs=52.1

Q ss_pred             EccCCcEEEEEeCCCCeEEEEEcCCCcEEEEe------ecC------CCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          186 MTLDGRFVATASSKGTLIRVFNTMDGSLLQEM------RRG------AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       186 ~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~------~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      +..++.+|++.+.+|. +++||+.+++.+..-      -..      .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4567889999999999 999999988764332      100      1345789999999998887765 4778999887


Q ss_pred             CCC
Q 018248          254 VDS  256 (359)
Q Consensus       254 ~~~  256 (359)
                      -+.
T Consensus        96 L~~   98 (219)
T PF07569_consen   96 LGC   98 (219)
T ss_pred             cce
Confidence            654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.76  E-value=2.1  Score=35.63  Aligned_cols=146  Identities=16%  Similarity=0.247  Sum_probs=68.4

Q ss_pred             ceeEEEEecceeEEEecCeEEEEEcccceeeeeEec----cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE
Q 018248           97 EVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIET----VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK  172 (359)
Q Consensus        97 ~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~  172 (359)
                      ...++.|..+.-+++.+..+.+.....++.-..+..    ...+....++.+  ....++  + ..|.|+.-...++.-+
T Consensus        63 ~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~--~~~~l~--~-~~G~iy~T~DgG~tW~  137 (302)
T PF14870_consen   63 HLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGD--GSAELA--G-DRGAIYRTTDGGKTWQ  137 (302)
T ss_dssp             EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEET--TEEEEE--E-TT--EEEESSTTSSEE
T ss_pred             eEEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCC--CcEEEE--c-CCCcEEEeCCCCCCee
Confidence            466778876666666443444444444443333321    112222233322  222233  2 3566665333333322


Q ss_pred             E-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          173 Y-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       173 ~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      . ...-.+.+..+.-++||+++++++.-.. ..-||--...-...-+.  ....|.+|.|+|++.+.+.+ ..|.|++=+
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~-~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNF-YSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSE-EEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccE-EEEecCCCccceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            2 3344567888889999999888765544 56777432212222221  34689999999998876654 778777766

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.64  E-value=0.14  Score=39.61  Aligned_cols=97  Identities=11%  Similarity=0.091  Sum_probs=53.7

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCE--EEEEecCCCCCCeEEEEECCCccEEeeec-
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNI--ICLVNSGPHQSNKVMIWDDHENRYLGELS-   93 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-   93 (359)
                      +..+++|+ +|.|.+|+.........+..    ...-......|....  +.++++   .|+.|+.|+++-++.+.... 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~----s~~e~i~~~Ip~~~~~~~~c~~~---~dg~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC----SGEESIDLGIPNGRDSSLGCVGA---QDGRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh----cccccceeccccccccceeEEec---cCCceeeeccccCceeeeecc
Confidence            35677777 99999999873322221111    111112222333332  444444   58999999998888777665 


Q ss_pred             cC-cceeEEEEecceeEEE-----ecCeEEEEEc
Q 018248           94 FR-SEVKNVRLRRDRIVVV-----LNQKVYVYNF  121 (359)
Q Consensus        94 ~~-~~v~~~~~~~~~~~~~-----~d~~i~i~d~  121 (359)
                      |. .++..+..+..+.++.     .|..++.|++
T Consensus       143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            55 4444444444443333     4555566655

>PHA02713 hypothetical protein; Provisional

Probab=94.59  E-value=3.7  Score=37.79  Aligned_cols=21  Identities=5%  Similarity=0.028  Sum_probs=14.5

Q ss_pred             cCCEEEEEecCC--eEEEEEeCC
Q 018248          318 QNNTIVIVGLDG--SYYKCEFDP  338 (359)
Q Consensus       318 ~~~~l~~~~~dg--~i~v~~~~~  338 (359)
                      +++..++||.||  .+..|+...
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccc
Confidence            667888888888  555565443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.52  E-value=2.2  Score=34.96  Aligned_cols=215  Identities=12%  Similarity=0.143  Sum_probs=113.6

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEcCCC-----cceeeeecc--cC--CCCceeEEEEeccC------------CEEE
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLSDPY-----KPIMRRDFD--RN--PRGGTQLVSMLFRS------------NIIC   66 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~-----~~~~~~~~~--~~--h~~~v~~~~~~~~~------------~~~~   66 (359)
                      -+.|+++|.+.+-++.. .+...+||.++.     ...+...+.  .+  .....+-+.+....            ...+
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            46899999987767666 788999999721     122223322  01  01122333333211            2234


Q ss_pred             EEecCCCCCCeEEEEECCCccE-----Eeeec--cCcce-eEEEEecc--eeEEE----ecCeEEEEEcccceeeeeEec
Q 018248           67 LVNSGPHQSNKVMIWDDHENRY-----LGELS--FRSEV-KNVRLRRD--RIVVV----LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        67 ~~~~~~~~d~~i~iwd~~~~~~-----~~~~~--~~~~v-~~~~~~~~--~~~~~----~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      +++    +||+|.-|...-+..     ...+.  ....| ..+++...  +.++.    ..++|.++|-. -+++..-..
T Consensus       105 f~t----EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~  179 (336)
T TIGR03118       105 FVT----EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGS  179 (336)
T ss_pred             EEe----CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCC
Confidence            555    789999998533222     12222  12333 34555432  33333    77889998842 222211000


Q ss_pred             cCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                      ...+---..+.|-+    +..   -.+.++| |..+                   .++++.=+.+..-|. |-+||+ +|
T Consensus       180 F~DP~iPagyAPFn----Iqn---ig~~lyVtYA~q-------------------d~~~~d~v~G~G~G~-VdvFd~-~G  231 (336)
T TIGR03118       180 FIDPALPAGYAPFN----VQN---LGGTLYVTYAQQ-------------------DADRNDEVAGAGLGY-VNVFTL-NG  231 (336)
T ss_pred             ccCCCCCCCCCCcc----eEE---ECCeEEEEEEec-------------------CCcccccccCCCcce-EEEEcC-CC
Confidence            11110011223322    222   1345665 4433                   122222234445567 899985 78


Q ss_pred             cEEEEeecCCCCcceEEEEecC------CCCEEEEEcCCCcEEEEEccCCC
Q 018248          212 SLLQEMRRGAERAEIYSLAFSS------NAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..++++.....-...+.|+..|      .|.+|+---.||+|..||..+++
T Consensus       232 ~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       232 QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence            8888876443445667787765      46677766679999999998876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=1.3  Score=38.21  Aligned_cols=139  Identities=7%  Similarity=0.062  Sum_probs=90.8

Q ss_pred             EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      .+-|....+.|.+...|.+.=|-+.+...-....+.....+++..+.|+++.+.+++--    .+.+|.+++....+...
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR----~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQR----TSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEe----cCceEEEEecCCCchhh
Confidence            34455555566655577777787765443222333223467899999999998888776    67999999975444433


Q ss_pred             eec-----cCcceeEEEEecceeEEE-ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           91 ELS-----FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        91 ~~~-----~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .+.     ....|....|+.+..+.. .+..+-+|..... +.++..+.+.-.+....|+++..-.++++
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            332     335588999988755544 8888888876433 33455566677777788888776544444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.48  E-value=0.34  Score=38.20  Aligned_cols=61  Identities=13%  Similarity=0.263  Sum_probs=44.8

Q ss_pred             EeccCCEEEEEecCCCCCCeEEEEECCCccEEeee---------------ccCcceeEEEEecceeEEE--ecCeEEEEE
Q 018248           58 MLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGEL---------------SFRSEVKNVRLRRDRIVVV--LNQKVYVYN  120 (359)
Q Consensus        58 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~--~d~~i~i~d  120 (359)
                      +...+++++.++    .+|.+++||+.+++.+..-               .....|..+.++.+|.-++  .+|..+.|+
T Consensus        18 l~~~~~~Ll~iT----~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAIT----SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEe----CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            445677877777    6899999999998765543               1235677788888886666  788888888


Q ss_pred             cc
Q 018248          121 FT  122 (359)
Q Consensus       121 ~~  122 (359)
                      ..
T Consensus        94 ~~   95 (219)
T PF07569_consen   94 PD   95 (219)
T ss_pred             cc
Confidence            63

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.47  E-value=3  Score=38.84  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=51.3

Q ss_pred             cccccEEEEc--cCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCC---C---EEEEEcCCCcEE
Q 018248          178 ASRIASIAMT--LDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNA---Q---WLAASSDKGTVH  248 (359)
Q Consensus       178 ~~~i~~~~~s--~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~  248 (359)
                      ....++++++  ...++||+++.... |.||-.... +.......+.+...|.+++|-++.   .   .|++++-.|.+.
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~  241 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW  241 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence            3478899998  77888998888887 888865432 111111111244578888887643   2   788889999999


Q ss_pred             EEEcc
Q 018248          249 VFGLK  253 (359)
Q Consensus       249 iw~~~  253 (359)
                      +|++.
T Consensus       242 ~~~I~  246 (717)
T PF08728_consen  242 TFKIK  246 (717)
T ss_pred             EEEEE
Confidence            98883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.37  E-value=2  Score=33.71  Aligned_cols=88  Identities=13%  Similarity=0.047  Sum_probs=56.5

Q ss_pred             eEEEEeccCCEEEEEecCCCCCCeEEEEE--CCCcc-----EEeeecc----C-cceeEEEEecceeEEE---ecCeEEE
Q 018248           54 QLVSMLFRSNIICLVNSGPHQSNKVMIWD--DHENR-----YLGELSF----R-SEVKNVRLRRDRIVVV---LNQKVYV  118 (359)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd--~~~~~-----~~~~~~~----~-~~v~~~~~~~~~~~~~---~d~~i~i  118 (359)
                      ..++|..+.+.+.+...   .+-.|.-||  ..+|.     .+..++.    + ...-.+++..+|.+.+   ..++|..
T Consensus       161 Ngl~Wd~d~K~fY~iDs---ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDS---LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             ccccccccCcEEEEEcc---CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            34566644454444433   457787787  55553     3333321    1 1223455556666555   7889999


Q ss_pred             EEcccceeeeeEeccCCCceeeeeec
Q 018248          119 YNFTDLKLVDQIETVVNPTGLCDVSQ  144 (359)
Q Consensus       119 ~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (359)
                      .|..+|+.+..+..+...+++++|--
T Consensus       238 ~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  238 VDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ECCCCCcEEEEEEcCCCceEEEEecC
Confidence            99999999999998888888888754

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.06  E-value=2.7  Score=34.11  Aligned_cols=147  Identities=12%  Similarity=0.013  Sum_probs=87.8

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEE-ccccee-
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYN-FTDLKL-  126 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d-~~~~~~-  126 (359)
                      .+...+++++++.++++.... ....+.++..  +...........+..-.|++++...+   .+...+++. ..+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~-~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGD-GGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcC-CCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            577788999999888877221 2355666653  33333322334777788999977666   344445553 223322 


Q ss_pred             eeeEecc--CCCceeeeeecCCCccEEEecCCCCeeEEEE--ec--CC------eeeEEeecccccccEEEEccCCcEEE
Q 018248          127 VDQIETV--VNPTGLCDVSQNAGPMVMACPGLLKGQVRVE--DY--GT------KKSKYITAHASRIASIAMTLDGRFVA  194 (359)
Q Consensus       127 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~--~~--~~------~~~~~~~~~~~~i~~~~~s~~~~~l~  194 (359)
                      ...+...  ...|..+.++|++....++.....++.|.+-  ..  ++      ............+..++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1122221  1278899999999997777755556788872  11  22      11122223356789999999999777


Q ss_pred             EEeCCCC
Q 018248          195 TASSKGT  201 (359)
Q Consensus       195 ~~~~dg~  201 (359)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            6655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.99  E-value=2.2  Score=32.82  Aligned_cols=171  Identities=11%  Similarity=0.132  Sum_probs=88.6

Q ss_pred             ccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC-cceeEEEE--ecceeEEE--ecCeEEEEEcccceeeeeEeccC
Q 018248           60 FRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR-SEVKNVRL--RRDRIVVV--LNQKVYVYNFTDLKLVDQIETVV  134 (359)
Q Consensus        60 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~--~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~  134 (359)
                      ..++.++ .+.|.+....|++||+.+++.+.+.+.. ..+..--.  ..+.-+..  .++.-.++|..+.+.+..+.-..
T Consensus        53 ~~~g~i~-esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G  131 (262)
T COG3823          53 YLDGHIL-ESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG  131 (262)
T ss_pred             eeCCEEE-EeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence            3444443 4444435688999999999988776633 23322112  22333333  88999999998887777664322


Q ss_pred             CCceeeeeecCCCccEEEecCCCCeeEEEEecCC---eeeEEe--eccc---ccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248          135 NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---KKSKYI--TAHA---SRIASIAMTLDGRFVATASSKGTLIRVF  206 (359)
Q Consensus       135 ~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---~~~~~~--~~~~---~~i~~~~~s~~~~~l~~~~~dg~~i~iw  206 (359)
                      .   -..+..+++.  +..+   ||+-.+.-++.   .....+  ....   ..++.+.| -||...|-.=.+.. |...
T Consensus       132 e---GWgLt~d~~~--Lims---dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~-I~rI  201 (262)
T COG3823         132 E---GWGLTSDDKN--LIMS---DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTR-IARI  201 (262)
T ss_pred             c---ceeeecCCcc--eEee---CCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecc-eEEE
Confidence            2   2345566665  3331   44444411111   111111  1111   12233333 25555554444444 5555


Q ss_pred             EcCCCcEEEEeec----------CCCCcceEEEEecCCC-CEEEEE
Q 018248          207 NTMDGSLLQEMRR----------GAERAEIYSLAFSSNA-QWLAAS  241 (359)
Q Consensus       207 d~~~~~~~~~~~~----------~~~~~~i~~~~~s~~~-~~l~~~  241 (359)
                      |..+|+.+..+..          ..+..-.+.+++.|++ +++++|
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            6666665554432          1133456789999887 455554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.98  E-value=3.8  Score=35.58  Aligned_cols=181  Identities=15%  Similarity=0.142  Sum_probs=78.7

Q ss_pred             CCCeEEEEECCCc----cEEeeecc----C----cceeEEEEecceeEEE---------ecCeEEEEEcccceeeeeEec
Q 018248           74 QSNKVMIWDDHEN----RYLGELSF----R----SEVKNVRLRRDRIVVV---------LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        74 ~d~~i~iwd~~~~----~~~~~~~~----~----~~v~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      ..+.|.|.|+.+.    +..+.++.    .    .....+..-|+|.+++         .-|.+.++|-++.+.....+.
T Consensus        96 ~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~  175 (461)
T PF05694_consen   96 RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK  175 (461)
T ss_dssp             TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S
T ss_pred             ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceecc
Confidence            4589999998743    33333331    1    2233455567885555         235788888777777666654


Q ss_pred             cCCC---ceeeeeecCCCccEEEec-------------------CCCCeeEEEEecCCee-eEEeeccc--ccccEEEEc
Q 018248          133 VVNP---TGLCDVSQNAGPMVMACP-------------------GLLKGQVRVEDYGTKK-SKYITAHA--SRIASIAMT  187 (359)
Q Consensus       133 ~~~~---~~~~~~~~~~~~~~l~~~-------------------g~~d~~v~~~~~~~~~-~~~~~~~~--~~i~~~~~s  187 (359)
                      ....   -....+.|..+  +++++                   +....++.+|+...+. ++++.-..  .-...+.|.
T Consensus       176 ~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl  253 (461)
T PF05694_consen  176 DRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL  253 (461)
T ss_dssp             B-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-
T ss_pred             CCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEec
Confidence            3221   12233444332  34432                   1224688899988744 44444322  234567775


Q ss_pred             c--CCcEEEEEe-CCCCeEEEEEc-CCCc----EEEEeecCC---------------CCcceEEEEecCCCCEEEEEc-C
Q 018248          188 L--DGRFVATAS-SKGTLIRVFNT-MDGS----LLQEMRRGA---------------ERAEIYSLAFSSNAQWLAASS-D  243 (359)
Q Consensus       188 ~--~~~~l~~~~-~dg~~i~iwd~-~~~~----~~~~~~~~~---------------~~~~i~~~~~s~~~~~l~~~~-~  243 (359)
                      .  +..+-++++ -... |..|-- ..++    .+.++....               -+.-|+.+.+|.|.++|...+ .
T Consensus       254 H~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~  332 (461)
T PF05694_consen  254 HDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL  332 (461)
T ss_dssp             SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETT
T ss_pred             CCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEccc
Confidence            4  444433333 3334 554433 3443    222222110               034589999999999987665 6


Q ss_pred             CCcEEEEEccCCCC
Q 018248          244 KGTVHVFGLKVDSG  257 (359)
Q Consensus       244 dg~i~iw~~~~~~~  257 (359)
                      .|.|+.||+.....
T Consensus       333 ~GdvrqYDISDP~~  346 (461)
T PF05694_consen  333 HGDVRQYDISDPFN  346 (461)
T ss_dssp             TTEEEEEE-SSTTS
T ss_pred             CCcEEEEecCCCCC
Confidence            89999999998763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.83  E-value=3.8  Score=37.93  Aligned_cols=172  Identities=13%  Similarity=0.239  Sum_probs=92.7

Q ss_pred             CeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE----eccCCCceeeeeecCCCc
Q 018248           76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI----ETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  148 (359)
                      ..|+|++ .+|+.+..+. ...++-.+.|+.+..+++  .+|++++|++. |..+...    +.....+.-+.+..  ++
T Consensus        64 ~~I~If~-~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~--~G  139 (829)
T KOG2280|consen   64 PYIRIFN-ISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH--NG  139 (829)
T ss_pred             eeEEEEe-ccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec--Cc
Confidence            6689998 5777777766 445888999999998888  99999999983 3222221    11122233233333  34


Q ss_pred             cEEEecCCCCeeEEE-EecCCeeeEEeec---ccccccEEEEccCCc---EEEEEe-CCCCeEEEEEcCCCc-EEEEeec
Q 018248          149 MVMACPGLLKGQVRV-EDYGTKKSKYITA---HASRIASIAMTLDGR---FVATAS-SKGTLIRVFNTMDGS-LLQEMRR  219 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~-~~~~~~~~~~~~~---~~~~i~~~~~s~~~~---~l~~~~-~dg~~i~iwd~~~~~-~~~~~~~  219 (359)
                      +.+.+   .+|.+.+ .......+..++.   ...+-.|-...+++.   .++-.. ..+  ..++...... ....+..
T Consensus       140 Vavlt---~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~--~~~~q~~~~~~q~~~~~~  214 (829)
T KOG2280|consen  140 VAVLT---VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG--LHICQVEESRVQLHALSW  214 (829)
T ss_pred             eEEEe---cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh--hcccceecccccccccCC
Confidence            44444   3555555 3333323333322   111112222222221   111111 111  1122111111 1112221


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                        ..+.+..+..||+.++|+.=..+|.|.+-..+..+..
T Consensus       215 --~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  215 --PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             --CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence              2357889999999999999999999888887766543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.18  E-value=0.014  Score=49.92  Aligned_cols=135  Identities=15%  Similarity=0.221  Sum_probs=87.2

Q ss_pred             EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEe
Q 018248           56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIE  131 (359)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~  131 (359)
                      ..|.+.+..++.++    .+..+..|| +.++.+.....++...+++|..++..++    ..+.+.+||+.+.. ..+++
T Consensus        40 ~~w~~e~~nlavac----a~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE  113 (615)
T KOG2247|consen   40 HRWRPEGHNLAVAC----ANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLE  113 (615)
T ss_pred             eeEecCCCceehhh----hhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHh
Confidence            34455555555555    568888999 7777777777788888899988876555    88999999995432 22222


Q ss_pred             -ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec-ccccccEEEEccCCcEEEEEeCCC
Q 018248          132 -TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA-HASRIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       132 -~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg  200 (359)
                       +....-....|++....  ++. |...|.+.++...........+ |...+.++++.+.+..+ .++.|.
T Consensus       114 ~gg~~s~sll~wsKg~~e--l~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~  180 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPE--LVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN  180 (615)
T ss_pred             ccCcchHHHHhhccCCcc--ccc-cccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence             22222344667776655  443 5577888886655433333334 88899999999877544 444443

>PHA02713 hypothetical protein; Provisional

Probab=93.10  E-value=7.1  Score=35.97  Aligned_cols=64  Identities=8%  Similarity=0.077  Sum_probs=39.0

Q ss_pred             cCCcEEEEEeCC------CCeEEEEEcCC-CcE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCC--cEEEEEccCCC
Q 018248          188 LDGRFVATASSK------GTLIRVFNTMD-GSL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKG--TVHVFGLKVDS  256 (359)
Q Consensus       188 ~~~~~l~~~~~d------g~~i~iwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~  256 (359)
                      -+++..+.|+.+      .. +..||..+ .+-  +..+..  .......+.+  ++++.++|+.++  .+..||..+.+
T Consensus       462 ~~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        462 HKDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ECCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            356766777654      23 67899876 443  233322  1122223333  788889999888  67788887766

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.08  E-value=5.4  Score=34.50  Aligned_cols=62  Identities=19%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             ccccEEEEccCCcEEEEEeCC-------------------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          179 SRIASIAMTLDGRFVATASSK-------------------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~d-------------------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      .....++|.|||.+.++-+..                   |. |.-++..+++ +..+..+ . .....++|+|+|++++
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~  199 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LFRYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFF  199 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EEEEecCCCe-EEEEecC-c-CCCccceECCCCCEEE
Confidence            447789999999866544421                   33 5555544433 3333322 2 3457899999999887


Q ss_pred             EEcCC
Q 018248          240 ASSDK  244 (359)
Q Consensus       240 ~~~~d  244 (359)
                      +-..+
T Consensus       200 tdn~~  204 (367)
T TIGR02604       200 CDNDD  204 (367)
T ss_pred             EccCC
Confidence            64433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=93.02  E-value=4.5  Score=34.81  Aligned_cols=86  Identities=17%  Similarity=0.260  Sum_probs=59.4

Q ss_pred             CeEEEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248           76 NKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      +.+.+.| +....+..++   ....|.+++|..|-.+++   .-.-+.+.|+.+.+..+.+..-.-+-.+--++|-+++.
T Consensus       406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~  484 (603)
T COG4880         406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR  484 (603)
T ss_pred             ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence            4566776 5556666665   567899999999888887   56678888986654433332222222445678888888


Q ss_pred             EEEecCCCCeeEEE
Q 018248          150 VMACPGLLKGQVRV  163 (359)
Q Consensus       150 ~l~~~g~~d~~v~~  163 (359)
                      ++.. |..+|.+++
T Consensus       485 ~lGv-G~~~g~vKi  497 (603)
T COG4880         485 LLGV-GAYQGGVKI  497 (603)
T ss_pred             EEEe-ecccCCceE
Confidence            8887 778898888

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.75  E-value=5.6  Score=33.82  Aligned_cols=52  Identities=27%  Similarity=0.466  Sum_probs=34.4

Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE---EEEee--cCCCCcceEEEEecCC
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL---LQEMR--RGAERAEIYSLAFSSN  234 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~---~~~~~--~~~~~~~i~~~~~s~~  234 (359)
                      ..+.|+|.|||+++++ ...|. |++++ .++..   +..+.  ..........++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~-i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGR-IWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTE-EEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCce-EEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            3578999999987765 56888 99998 45543   22221  1113457899999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.74  E-value=6.4  Score=34.48  Aligned_cols=139  Identities=14%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             EEEEEecCCCCCCeEEEEECCCcc-----EEeeeccCcceeEEEEec-----ceeEEE--ecCeEEEEEccc--ce----
Q 018248           64 IICLVNSGPHQSNKVMIWDDHENR-----YLGELSFRSEVKNVRLRR-----DRIVVV--LNQKVYVYNFTD--LK----  125 (359)
Q Consensus        64 ~~~~~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~~~--~d~~i~i~d~~~--~~----  125 (359)
                      .+++.+    ..|.++||+...+.     .+.+.+.+.+|..+..-+     +...++  .-..+.+|.+..  +.    
T Consensus        39 ~IivGS----~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   39 KIIVGS----YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             EEEEec----cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence            444444    67999999976543     444555778888887532     333444  788899998821  11    


Q ss_pred             ---eeeeEeccCC--CceeeeeecCCC---ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe
Q 018248          126 ---LVDQIETVVN--PTGLCDVSQNAG---PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       126 ---~~~~~~~~~~--~~~~~~~~~~~~---~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  197 (359)
                         .+..+..|.-  ....++.-|-+.   .-.++. -+.||.+.+++.+.-....+-...--...+.|.+.-..+++++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcV-QS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICV-QSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEE-EecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence               1122222211  112233333222   123333 5679999998877655444433333445667777777777777


Q ss_pred             CCCCeEEEEEc
Q 018248          198 SKGTLIRVFNT  208 (359)
Q Consensus       198 ~dg~~i~iwd~  208 (359)
                      .+.. +..|..
T Consensus       194 ss~~-l~~Yky  203 (418)
T PF14727_consen  194 SSWT-LECYKY  203 (418)
T ss_pred             Ccee-EEEecH
Confidence            7766 776654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.47  E-value=0.79  Score=44.13  Aligned_cols=140  Identities=11%  Similarity=0.071  Sum_probs=81.2

Q ss_pred             cceeEEEEecceeEEE-----ecCeEEEEEcccceeee-----eEec------cCCCceeeeeecCCCccEEEecCCCCe
Q 018248           96 SEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVD-----QIET------VVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        96 ~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      -.+..+...+|+...+     .+..|..||++.-..-.     .+..      ......++.|.|.-....++  ...|+
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av--~l~dl  178 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV--DLSDL  178 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh--hcccc
Confidence            3455555666654433     44478889985432111     1111      11222345666654433333  34677


Q ss_pred             eEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC--CCcceEEEEecCCC
Q 018248          160 QVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA--ERAEIYSLAFSSNA  235 (359)
Q Consensus       160 ~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~  235 (359)
                      .|++.....  ..+..+ .-....++++|+|.|+.++.|-..|+ +.-|. ..++....+....  ....|.+++|-...
T Consensus       179 sl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             chhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence            887744332  222222 23556899999999999999999999 88776 3555444443311  23579999998766


Q ss_pred             CEEEE
Q 018248          236 QWLAA  240 (359)
Q Consensus       236 ~~l~~  240 (359)
                      .++++
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            66654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.46  E-value=5.1  Score=32.71  Aligned_cols=160  Identities=6%  Similarity=0.046  Sum_probs=95.9

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFT  122 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~  122 (359)
                      |-...++.+.++++.+.++.+..    ...-.++=..+|+.++++.  .-.....+.+..++++++   .++.+.++.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            44566899999999999888873    4555555558899999987  335566788888888888   67788887764


Q ss_pred             cceeee-----eEe--c--c-CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee--e--EEeecc-------cccc
Q 018248          123 DLKLVD-----QIE--T--V-VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK--S--KYITAH-------ASRI  181 (359)
Q Consensus       123 ~~~~~~-----~~~--~--~-~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~--~--~~~~~~-------~~~i  181 (359)
                      ......     .+.  .  + .....-+++.|....++++=   +..-+.|+..++.+  +  .....+       -..+
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            332111     111  1  1 22344578888777655543   34445553333211  1  111111       2346


Q ss_pred             cEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248          182 ASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       182 ~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~  216 (359)
                      .++.|++. +.+|+-+.+++. +.-.|. .|+.+..
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~  269 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIEL  269 (316)
T ss_pred             ccceecCCCCcEEEEecCCce-EEEEec-CCCeeee
Confidence            77888864 456666666666 777774 4554433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.40  E-value=6.1  Score=35.09  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      .|..+..++.|..++.++.+| |.|..+...=             .+++....+........-+.-.++|...       
T Consensus       105 eV~~vl~s~~GS~VaL~G~~G-i~vMeLp~rw-------------G~~s~~eDgk~~v~CRt~~i~~~~ftss-------  163 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKG-LMVMELPKRW-------------GKNSEFEDGKSTVNCRTTPVAERFFTSS-------  163 (741)
T ss_pred             EEEEEEecCCCceEEEecCCe-eEEEEchhhc-------------CccceecCCCceEEEEeecccceeeccC-------
Confidence            567888999999999999999 4554442211             0000000010001111111122333322       


Q ss_pred             ecCCcEEEeeecccC---CEEEEEecCCeEEEEEeCCC
Q 018248          305 LPENVQYLVGFGRQN---NTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~---~~l~~~~~dg~i~v~~~~~~  339 (359)
                       +.-.+..++|+|+.   ..|..-+.|..+++|++...
T Consensus       164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence             12245678999975   77899999999999998764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.27  E-value=0.55  Score=25.03  Aligned_cols=28  Identities=18%  Similarity=0.178  Sum_probs=20.3

Q ss_pred             CCCceEEEEEccCCCEEEEec--C--CceEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT--E--TGFRVY   32 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~--d--~~i~iw   32 (359)
                      ....-...+|||||+.|+.++  +  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345677899999999998777  5  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.20  E-value=9.5  Score=35.22  Aligned_cols=176  Identities=15%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             CeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE--ec------CeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248           76 NKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--LN------QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                      ..+..+|..+++....-.  ....-.+++...+..+++  .+      .++..||..+.+-.. +..-...-.......-
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l  379 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL  379 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE
Confidence            678899988875544333  444455666666656666  44      467788876655222 1111111122233333


Q ss_pred             CCccEEEecCCCCeeEE-----EEecCCeeeEEeecccccccEEE-EccCCcEEEEEeCCCCe-----EEEEEcCCCcEE
Q 018248          146 AGPMVMACPGLLKGQVR-----VEDYGTKKSKYITAHASRIASIA-MTLDGRFVATASSKGTL-----IRVFNTMDGSLL  214 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~-----~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~dg~~-----i~iwd~~~~~~~  214 (359)
                      +.. +.|+ |+.||.-.     .|+.....-.............. ..-+|++.++|+.++..     +..||..+.+..
T Consensus       380 ~g~-iYav-GG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGK-LYAV-GGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCE-EEEE-eccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            333 3444 44565433     34444333222221111112211 22377777888765531     678887776543


Q ss_pred             EEeecCCCCcceEEEEecCCCCEEEEEcCCCc-----EEEEEccCCC
Q 018248          215 QEMRRGAERAEIYSLAFSSNAQWLAASSDKGT-----VHVFGLKVDS  256 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~iw~~~~~~  256 (359)
                      ..-.-........ ++ .-++.+.+.|+.|+.     |..||..+.+
T Consensus       458 ~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  458 LIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            3222111111222 22 236778888887763     6667776654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.16  E-value=1.1  Score=24.20  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=24.9

Q ss_pred             cCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecC
Q 018248          188 LDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRG  220 (359)
Q Consensus       188 ~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~  220 (359)
                      |++++|+++.. ++. |.++|..+++.+..+..+
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence            57787777664 566 999999999988888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.00  E-value=4.7  Score=31.30  Aligned_cols=48  Identities=17%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             EEEEEeCCCCeEEEEEcC--CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248          192 FVATASSKGTLIRVFNTM--DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       192 ~l~~~~~dg~~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                      .|..+..... |.+|++.  ..+.+..|..   -+.|..+.++..|++|+|--.
T Consensus        30 ~Lfva~~g~~-Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   30 ALFVAASGCK-VEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             eEEEEcCCCE-EEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence            4444455556 9999987  4456667763   478999999999999998643

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.88  E-value=8.1  Score=38.33  Aligned_cols=152  Identities=14%  Similarity=0.258  Sum_probs=87.3

Q ss_pred             eEEEEecc-eeE-EEecCeEEEEEcccceeeeeEeccCCCceeeee-ec-------CCCccEEEecCCCCeeEEEE----
Q 018248           99 KNVRLRRD-RIV-VVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDV-SQ-------NAGPMVMACPGLLKGQVRVE----  164 (359)
Q Consensus        99 ~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~l~~~g~~d~~v~~~----  164 (359)
                      ..+-+-|. ++. +..|+.+.+|+.+++.....+.+..+.+-.+.+ .|       .=+..+++++   --.|.+.    
T Consensus        82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~  158 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSF  158 (1311)
T ss_pred             eeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEe
Confidence            33444443 333 339999999999887777777665554443332 22       2223333321   2233331    


Q ss_pred             ecCCeee------EEeecccccccEEEEccCCcEEEEEeCCCCeEE--EEEcCCC---c-E----------------EEE
Q 018248          165 DYGTKKS------KYITAHASRIASIAMTLDGRFVATASSKGTLIR--VFNTMDG---S-L----------------LQE  216 (359)
Q Consensus       165 ~~~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~--iwd~~~~---~-~----------------~~~  216 (359)
                      +......      ..+......|+++....+|+.+.+|-.+ . |+  +|...++   + +                +..
T Consensus       159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~  236 (1311)
T KOG1900|consen  159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-N-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS  236 (1311)
T ss_pred             ccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-C-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence            1111111      1222335578899988899877666544 5 54  2222221   1 0                111


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +. +.+..+|..++.......|.+-+..|+|.+|++....
T Consensus       237 ~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  237 VP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             CC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence            22 2356799999998888899999999999999998844

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.74  E-value=9.8  Score=34.41  Aligned_cols=146  Identities=12%  Similarity=0.066  Sum_probs=81.1

Q ss_pred             CceEEEEEccCCCEE-EEec---CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC----CEEEEEecCCCCCCeE
Q 018248            7 ITIHHLALNQDHGCF-ATGT---ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS----NIICLVNSGPHQSNKV   78 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l-~~~~---d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~~~~~~~~~d~~i   78 (359)
                      .+|..++|. ||+.+ .+.-   +|.+++=     .......     -..|..++|.|-.    ..++.+.    ....|
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfG-----ds~viGq-----FEhV~GlsW~P~~~~~~paLLAVQ----HkkhV   84 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFG-----DSKVIGQ-----FEHVHGLSWAPPCTADTPALLAVQ----HKKHV   84 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccC-----CccEeec-----cceeeeeeecCcccCCCCceEEEe----ccceE
Confidence            578888997 55544 3321   3333322     1222223     3567777887642    1233344    46899


Q ss_pred             EEEECC-----CccEEee----eccCc--ceeEEEEecceeEEE--ecCeE-EEEEccc--ceeeeeEeccCCCceeeee
Q 018248           79 MIWDDH-----ENRYLGE----LSFRS--EVKNVRLRRDRIVVV--LNQKV-YVYNFTD--LKLVDQIETVVNPTGLCDV  142 (359)
Q Consensus        79 ~iwd~~-----~~~~~~~----~~~~~--~v~~~~~~~~~~~~~--~d~~i-~i~d~~~--~~~~~~~~~~~~~~~~~~~  142 (359)
                      .+|.+.     +++.+..    +...-  -.....|+|...+++  ....+ .+++++.  .+....+ ...+.+.+.+|
T Consensus        85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACW  163 (671)
T PF15390_consen   85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACW  163 (671)
T ss_pred             EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEe
Confidence            999865     2333322    21112  234678999887777  33333 3445432  2222233 34567889999


Q ss_pred             ecCCCccEEEecCCCCeeEEEEecCCee
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDYGTKK  170 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~~~~~  170 (359)
                      ..||..+++|. |+ .=.-++|+...+.
T Consensus       164 T~DG~RLVVAv-GS-sLHSyiWd~~qKt  189 (671)
T PF15390_consen  164 TKDGQRLVVAV-GS-SLHSYIWDSAQKT  189 (671)
T ss_pred             cCcCCEEEEEe-CC-eEEEEEecCchhh
Confidence            99999877776 54 3345567766543

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=91.58  E-value=11  Score=34.67  Aligned_cols=239  Identities=10%  Similarity=0.053  Sum_probs=119.8

Q ss_pred             ceEEEEEccCCCEEEEecC--C----ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEE
Q 018248            8 TIHHLALNQDHGCFATGTE--T----GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMI   80 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~d--~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~i   80 (359)
                      .+-.++.|||.+++|.+-|  |    ++++-|+.+++..... +    .+.....+|..+++.+........ .-.+|..
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~-i----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~  204 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE-I----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR  204 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh-h----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence            4567888999999988763  2    3889999887655322 2    344667788888888877764321 1122333


Q ss_pred             EECCC--ccEEeeec--cCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCcc
Q 018248           81 WDDHE--NRYLGELS--FRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        81 wd~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  149 (359)
                      -.+.+  .+....+.  ...--.++.-+....+++      ....+++.+.........+ ......+ -......++..
T Consensus       205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~-eY~~eh~~d~f  283 (682)
T COG1770         205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV-EYSVEHGGDRF  283 (682)
T ss_pred             EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc-EEeeeecCcEE
Confidence            33333  22222222  222223333344455554      4567888887554332222 1111111 12222334444


Q ss_pred             EEEecCCCCe-eEEEEecCC----eeeEEeecccccccEEEEccCCcEEEEEeCCCC--eEEEEEcCCCcEEEEeecCCC
Q 018248          150 VMACPGLLKG-QVRVEDYGT----KKSKYITAHASRIASIAMTLDGRFVATASSKGT--LIRVFNTMDGSLLQEMRRGAE  222 (359)
Q Consensus       150 ~l~~~g~~d~-~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--~i~iwd~~~~~~~~~~~~~~~  222 (359)
                      ++.+ . .+| ..+|.....    ..-+.+..|...+.--.|+--..+|+....++.  .|++++.++++... +... .
T Consensus       284 ~i~s-N-~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~-~  359 (682)
T COG1770         284 YILS-N-ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFD-D  359 (682)
T ss_pred             EEEe-c-CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEec-c
Confidence            4443 2 233 334422221    333455667777776677766777776655432  17788887766543 3221 2


Q ss_pred             CcceEEEEecCC--CCEE--EEEcC--CCcEEEEEccCCC
Q 018248          223 RAEIYSLAFSSN--AQWL--AASSD--KGTVHVFGLKVDS  256 (359)
Q Consensus       223 ~~~i~~~~~s~~--~~~l--~~~~~--dg~i~iw~~~~~~  256 (359)
                      ......+..+++  ...|  -..+.  =.++.=+|+.+++
T Consensus       360 ~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e  399 (682)
T COG1770         360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE  399 (682)
T ss_pred             hhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc
Confidence            233444444432  2222  22222  2345556666665

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.57  E-value=9.3  Score=33.81  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=25.5

Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999889999999999999999986

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.54  E-value=2.1  Score=32.30  Aligned_cols=30  Identities=23%  Similarity=0.416  Sum_probs=24.7

Q ss_pred             ccccEEEEccCC------cEEEEEeCCCCeEEEEEcC
Q 018248          179 SRIASIAMTLDG------RFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       179 ~~i~~~~~s~~~------~~l~~~~~dg~~i~iwd~~  209 (359)
                      ..+..++|||.|      -+||+.+.++. |.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecC
Confidence            378899999954      37888999999 9999854

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.51  E-value=2.1  Score=37.00  Aligned_cols=100  Identities=10%  Similarity=0.069  Sum_probs=63.3

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeee--ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRR--DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..++|.++.||+|.+.||+-. +.+|.+++..+.+.....  +.+ ..+..+....|..+ .-++++.     +..+.+|
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-~k~~~IlGF~W~~s-~e~A~i~-----~~G~e~y  137 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-TKNANILGFCWTSS-TEIAFIT-----DQGIEFY  137 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-cCcceeEEEEEecC-eeEEEEe-----cCCeEEE
Confidence            467999999999999999998 999999998644333211  111 11222334444433 4456665     3556666


Q ss_pred             ECCC-ccEEeeec-cCcceeEEEEecceeEEE
Q 018248           82 DDHE-NRYLGELS-FRSEVKNVRLRRDRIVVV  111 (359)
Q Consensus        82 d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~  111 (359)
                      .... .+.++..+ +...|.-..|.++...+.
T Consensus       138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             EEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence            5433 23344444 777888888888876665

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.86  E-value=11  Score=33.43  Aligned_cols=57  Identities=16%  Similarity=0.223  Sum_probs=38.0

Q ss_pred             cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE--EEEee---cCCCCcceEEEEecCCC
Q 018248          178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL--LQEMR---RGAERAEIYSLAFSSNA  235 (359)
Q Consensus       178 ~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~--~~~~~---~~~~~~~i~~~~~s~~~  235 (359)
                      -...+.|+|.|||++|++--..|. |++++..++..  +..+.   .....+....|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345689999999988776655688 99987655432  21121   11124678999999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.67  E-value=14  Score=34.19  Aligned_cols=230  Identities=14%  Similarity=0.150  Sum_probs=106.0

Q ss_pred             ccCCCEEEEec-CC------ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCC-C--CCCeEEEEECC
Q 018248           15 NQDHGCFATGT-ET------GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGP-H--QSNKVMIWDDH   84 (359)
Q Consensus        15 s~~g~~l~~~~-d~------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~--~d~~i~iwd~~   84 (359)
                      +..+.++++|+ ++      .+..||..+........+.  +......++.  -++.+.+++|.. .  .-..+..||..
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--~~r~~~~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--SPRCRVGVAV--LNGKLYVVGGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--cccccccEEE--ECCEEEEEccccCCCcccceEEEecCC
Confidence            34466778887 53      4778888766444334432  1111122222  244555555432 0  22568889988


Q ss_pred             CccEEeeecc--CcceeEEEEecceeEEE--ec-----CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           85 ENRYLGELSF--RSEVKNVRLRRDRIVVV--LN-----QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        85 ~~~~~~~~~~--~~~v~~~~~~~~~~~~~--~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      +++....-.-  ...-.+++....-.+++  .|     .++..||..+.+--.. ..........+...-+..++ ++ |
T Consensus       358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iY-i~-G  434 (571)
T KOG4441|consen  358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLY-II-G  434 (571)
T ss_pred             CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEE-EE-c
Confidence            8775542221  11112222222223333  33     3577777654432111 11111222333333333333 33 3


Q ss_pred             CCCee------EEEEecCCeeeEEe---ecccccccEEEEccCCcEEEEEeCCC-----CeEEEEEcCCCcEEEEeecCC
Q 018248          156 LLKGQ------VRVEDYGTKKSKYI---TAHASRIASIAMTLDGRFVATASSKG-----TLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       156 ~~d~~------v~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg-----~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      +.++.      +..++.....-..+   ........ ++ .-++.+.+.|+.|+     + |..||..+.+....-.-..
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~-VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSS-VERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccce-EEEEcCCCCceeEcccCcc
Confidence            33332      33344443322221   11111111 22 23677778888765     3 6778887766543321111


Q ss_pred             CCcceEEEEecCCCCEEEEEcCCC-----cEEEEEccCCC
Q 018248          222 ERAEIYSLAFSSNAQWLAASSDKG-----TVHVFGLKVDS  256 (359)
Q Consensus       222 ~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~  256 (359)
                      ....+....+  +++..+.|+.||     +|..||..+.+
T Consensus       512 ~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  512 PRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            2222222333  577778888776     46677666654

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=90.54  E-value=15  Score=34.22  Aligned_cols=157  Identities=8%  Similarity=0.047  Sum_probs=0.0

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC------EEEEEec-CCCCCCe
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN------IICLVNS-GPHQSNK   77 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------~~~~~~~-~~~~d~~   77 (359)
                      ++.|..+.|.++++.+++.. +|.|.+|+.+.........+...+...+..-.+..+-.      ++++++. .. ..-.
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~-~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSN-SKLS  207 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCC-CcEE


Q ss_pred             EEEEEC-CCccEEeeec----cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEecc---CCC-ceeeeeecCC
Q 018248           78 VMIWDD-HENRYLGELS----FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETV---VNP-TGLCDVSQNA  146 (359)
Q Consensus        78 i~iwd~-~~~~~~~~~~----~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~---~~~-~~~~~~~~~~  146 (359)
                      .+++.+ .....+.++.    +........|.-+...+.  .+++|.+|++...+..+++...   ... ...+.+.|-.
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s  287 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS  287 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC


Q ss_pred             CccEEEecCCCCeeEEEEec
Q 018248          147 GPMVMACPGLLKGQVRVEDY  166 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~  166 (359)
                      ...++.+   .++.|++.+.
T Consensus       288 ~nRvLLs---~~nkIyLld~  304 (670)
T PF10395_consen  288 PNRVLLS---VNNKIYLLDL  304 (670)
T ss_pred             CCeEEEE---cCCEEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.42  E-value=5.7  Score=39.34  Aligned_cols=165  Identities=9%  Similarity=0.130  Sum_probs=88.9

Q ss_pred             CCeeEEEEecCC-eeeEEeecccccccEEEE--------ccCCcEEEEEeCCCCeEEEEEcC----CCcE---EEEeecC
Q 018248          157 LKGQVRVEDYGT-KKSKYITAHASRIASIAM--------TLDGRFVATASSKGTLIRVFNTM----DGSL---LQEMRRG  220 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~--------s~~~~~l~~~~~dg~~i~iwd~~----~~~~---~~~~~~~  220 (359)
                      .|+.+.+|+.+. .....+.+-...|..+.+        -|.=+++...+.--. |.++-+.    ++..   ...+.-.
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~e-i~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVE-IVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccce-EEEEEEEeccccCcccccccceeee
Confidence            388999998876 555556655556655543        233334433333333 5555432    1111   1112222


Q ss_pred             CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccC-CCC--CceeeeeEeeeecceEEecc
Q 018248          221 AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSS-KNS--SAISSFRFIRGVLPKYFSSK  297 (359)
Q Consensus       221 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~  297 (359)
                      .....|.++....+|+.+.+| .||  .+|.+.-....           ++.+. ..+  ...+.+..+-.+++..+   
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~-----------gWf~~rc~Kiclt~s~ls~lvPs~~~~~---  238 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED-----------GWFGSRCRKICLTKSVLSSLVPSLLSVP---  238 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC-----------chhhcccccccCchhHHHHhhhhhhcCC---
Confidence            345689999988899888765 455  55655433211           00000 000  01111111111111111   


Q ss_pred             cceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceE
Q 018248          298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMH  345 (359)
Q Consensus       298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~  345 (359)
                            ....++|..++....-+.|++-+..|+|.+|++.....+.++
T Consensus       239 ------~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r  280 (1311)
T KOG1900|consen  239 ------GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPR  280 (1311)
T ss_pred             ------CCCCCcceeeEeccccceeeeeccCceEEEEEccCCCcccee
Confidence                  012468888999888889999999999999999875444443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.77  E-value=5  Score=39.12  Aligned_cols=132  Identities=13%  Similarity=0.003  Sum_probs=78.7

Q ss_pred             EeccCCEEEEEecCCCCCCeEEEEECCCccEE--------eeec----cCcceeEEEEeccee--EEE--ecCeEEEEEc
Q 018248           58 MLFRSNIICLVNSGPHQSNKVMIWDDHENRYL--------GELS----FRSEVKNVRLRRDRI--VVV--LNQKVYVYNF  121 (359)
Q Consensus        58 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~~~----~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~  121 (359)
                      ..++....+++...  .+-.|..||+++-..-        ..-.    ......++.|+|.-.  .++  .|+.|++..+
T Consensus       108 ~~~D~t~s~v~~ts--ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~  185 (1405)
T KOG3630|consen  108 CFHDATDSVVVSTS--NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKST  185 (1405)
T ss_pred             eccCCceEEEEEec--CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhh
Confidence            33444444444432  3467889998653211        1111    223456778887532  222  8899988887


Q ss_pred             ccce-eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc----cccccEEEEccCCcEEEE
Q 018248          122 TDLK-LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH----ASRIASIAMTLDGRFVAT  195 (359)
Q Consensus       122 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~  195 (359)
                      .... ....+. ......+++|+|.++.  ++. |...|++.-+.........+...    ...|.+|+|-....++++
T Consensus       186 ~~~~~~v~s~p-~t~~~Tav~WSprGKQ--l~i-G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  186 KQLAQNVTSFP-VTNSQTAVLWSPRGKQ--LFI-GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhcccC-cccceeeEEeccccce--eeE-ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            4322 222222 3345678899999887  554 77788888788777655554332    367899999776666654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.46  E-value=1.8  Score=22.92  Aligned_cols=32  Identities=22%  Similarity=0.432  Sum_probs=20.0

Q ss_pred             eecccccccEEEEccCCcEEEEEeC-C--CCeEEEE
Q 018248          174 ITAHASRIASIAMTLDGRFVATASS-K--GTLIRVF  206 (359)
Q Consensus       174 ~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~~i~iw  206 (359)
                      +...........|||||+.|+-++. +  |. -.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            3344556678899999998776654 3  55 5555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.29  E-value=3.2  Score=35.97  Aligned_cols=163  Identities=9%  Similarity=0.142  Sum_probs=89.2

Q ss_pred             eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE--e-ecccc----ccc-EEEEccCCcEEEEEe
Q 018248          126 LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY--I-TAHAS----RIA-SIAMTLDGRFVATAS  197 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~--~-~~~~~----~i~-~~~~s~~~~~l~~~~  197 (359)
                      .+..+.....++..+-+.|+++..++.+ |   ..+.++....+....  + ....+    .|+ .+..-..|..|.+++
T Consensus       212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~-g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~  287 (733)
T COG4590         212 IIRLLSVPFSDVSQLLLTPDGKTLYVRT-G---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH  287 (733)
T ss_pred             hhhhcCCCccchHhhEECCCCCEEEEec-C---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence            3344555556677788899999877776 4   355554444333221  1 11111    122 222234566788899


Q ss_pred             CCCCeEEEE-EcCCCc-----EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCC
Q 018248          198 SKGTLIRVF-NTMDGS-----LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPN  271 (359)
Q Consensus       198 ~dg~~i~iw-d~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  271 (359)
                      .||. |.-| |.+.+.     .++.++.  .+.++.-+.-..+.+-+++-...|++.++.-...+..             
T Consensus       288 ~dG~-vsQWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-------------  351 (733)
T COG4590         288 EDGL-VSQWFDVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-------------  351 (733)
T ss_pred             CCCc-eeeeeeeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCcce-------------
Confidence            9998 8766 554332     1222221  2233333333333445666677777777665544321             


Q ss_pred             ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                           .++..         -..+..+++||.+.+|++ -..|.++++.++..
T Consensus       352 ---------------------L~~~~---------~~~~~~~~~Sp~~~~Ll~-e~~gki~~~~l~Nr  388 (733)
T COG4590         352 ---------------------LFERA---------YQAPQLVAMSPNQAYLLS-EDQGKIRLAQLENR  388 (733)
T ss_pred             ---------------------ehhhh---------hcCcceeeeCcccchhee-ecCCceEEEEecCC
Confidence                                 00000         012346899999998885 45678999998764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.25  E-value=7  Score=34.17  Aligned_cols=35  Identities=6%  Similarity=-0.219  Sum_probs=28.3

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP   39 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~   39 (359)
                      .+..+.+++.+|++++.|+.. =|.|.++|+..+..
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v  341 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV  341 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence            346689999999999888876 68899999986543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.21  E-value=12  Score=31.14  Aligned_cols=151  Identities=13%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             CeEEEEECCCccEEeeecc-------CcceeEEEEecce-----e--EEE--ecCeEEEEEcccceeeeeEeccCCCcee
Q 018248           76 NKVMIWDDHENRYLGELSF-------RSEVKNVRLRRDR-----I--VVV--LNQKVYVYNFTDLKLVDQIETVVNPTGL  139 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-----~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (359)
                      -+|.+||+.+++.++++..       .+.+..+.+....     .  ++.  ..+.|.++|+.+++.-+.+..       
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-------  106 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-------  106 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-------
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-------
Confidence            5888899999998888762       2456677776521     2  222  556899999988877555532       


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc---CCcEEEEEeCCCCeEEEEEcCCC-----
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL---DGRFVATASSKGTLIRVFNTMDG-----  211 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~~i~iwd~~~~-----  211 (359)
                       .+.+++....+..    +|.. +        .    ....+..++.+|   +++.|.-..-.+.  ++|.+++.     
T Consensus       107 -~~~~~p~~~~~~i----~g~~-~--------~----~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~  166 (287)
T PF03022_consen  107 -SFSPDPDAGPFTI----GGES-F--------Q----WPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDP  166 (287)
T ss_dssp             -GCTTS-SSEEEEE----TTEE-E--------E----ETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCST
T ss_pred             -Ccceeccccceec----cCce-E--------e----cCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCc
Confidence             2233333222222    1111 1        1    111266677765   7778877776654  56655321     


Q ss_pred             c---------EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          212 S---------LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       212 ~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      .         .+..+-.  .......++++++|.++++--..+.|..|+....
T Consensus       167 ~~~~~~~~~~~v~~lG~--k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  167 SLSDAQALASQVQDLGD--KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             T--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             cccccccccccceeccc--cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence            1         1122211  1135567889999999998889999999998874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.16  E-value=2.4  Score=38.91  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=26.0

Q ss_pred             ceEEEEecC----CCCEEEEEcCCCcEEEEEccCCCC
Q 018248          225 EIYSLAFSS----NAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       225 ~i~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ....+++++    +..+|++.+.|+++|+||+.++..
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            455666666    678999999999999999999886

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.11  E-value=4.7  Score=26.45  Aligned_cols=41  Identities=7%  Similarity=0.081  Sum_probs=27.7

Q ss_pred             eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE
Q 018248          197 SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS  241 (359)
Q Consensus       197 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  241 (359)
                      ..+|. +.-||..+++....+.+   -...+.+++++|+++|+.+
T Consensus        34 ~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   34 RPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             ---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEE
Confidence            34567 88999988876544443   2367899999999977665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.85  E-value=6.7  Score=27.91  Aligned_cols=111  Identities=11%  Similarity=0.064  Sum_probs=65.6

Q ss_pred             EEEEEccCCCEEEEec-CCceEEEEcCCCc--------ceeeeecccCCCCceeEEEEec---cC-CEEEEEecCCCCCC
Q 018248           10 HHLALNQDHGCFATGT-ETGFRVYLSDPYK--------PIMRRDFDRNPRGGTQLVSMLF---RS-NIICLVNSGPHQSN   76 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~---~~-~~~~~~~~~~~~d~   76 (359)
                      ..-.|......|++++ -++|.|++.....        .+....+    ...+.+++--+   +. .-.++++    ...
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliG----t~t   73 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIG----TQT   73 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEe----ccc
Confidence            3445666677888888 8999999876321        1222233    45666665432   22 2334444    358


Q ss_pred             eEEEEECCCccEEeeeccCcceeEEEEec----ceeEEE--ecCeEEEEEcccceeee
Q 018248           77 KVMIWDDHENRYLGELSFRSEVKNVRLRR----DRIVVV--LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--~d~~i~i~d~~~~~~~~  128 (359)
                      .+..||+..+..+.....++.|.++.+-.    ...+++  .+..|.-||.+..+...
T Consensus        74 ~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   74 SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence            99999999887766656667788877632    122333  55556666654444333

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=12  Score=30.62  Aligned_cols=224  Identities=14%  Similarity=0.142  Sum_probs=113.8

Q ss_pred             ccCCCEEEEec-CCceEEEEcCCCcce-eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc---cEE
Q 018248           15 NQDHGCFATGT-ETGFRVYLSDPYKPI-MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN---RYL   89 (359)
Q Consensus        15 s~~g~~l~~~~-d~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~   89 (359)
                      .-.|++..++. |..+-+.|+.+.... +..... .......-+++  +++....+.    .|+-+.+-|+...   ..+
T Consensus       135 ~vsGn~aYVadlddgfLivdvsdpssP~lagrya-~~~~d~~~v~I--SGn~AYvA~----~d~GL~ivDVSnp~sPvli  207 (370)
T COG5276         135 YVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA-LPGGDTHDVAI--SGNYAYVAW----RDGGLTIVDVSNPHSPVLI  207 (370)
T ss_pred             EecCCEEEEeeccCcEEEEECCCCCCceeeeeec-cCCCCceeEEE--ecCeEEEEE----eCCCeEEEEccCCCCCeEE
Confidence            34577887777 888888888754432 222221 11222223333  355555544    6788999987654   444


Q ss_pred             eeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEec
Q 018248           90 GELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY  166 (359)
Q Consensus        90 ~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~  166 (359)
                      ........+.++..+++..+++ .+.-+.+-|..+.+....+..  ..+++....+.-.++..+++- + ..|...++..
T Consensus       208 ~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad-g-a~gl~~idis  285 (370)
T COG5276         208 GSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD-G-AKGLPIIDIS  285 (370)
T ss_pred             EEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec-c-ccCceeEecc
Confidence            4555556788999999988888 777888888766554444322  223333323344455544543 2 2222222222


Q ss_pred             CC--eeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248          167 GT--KKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       167 ~~--~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                      +.  ..+. .+......-..+..  .+.++..+..+ . ..+-+....+......+  ....+.+.+.+-+.+.+.+...
T Consensus       286 np~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~d~  359 (370)
T COG5276         286 NPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYSTDY  359 (370)
T ss_pred             CCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEeec
Confidence            11  1111 11111112223322  23344333333 2 34444433332222221  1223344444446668888888


Q ss_pred             CCcEEEEEcc
Q 018248          244 KGTVHVFGLK  253 (359)
Q Consensus       244 dg~i~iw~~~  253 (359)
                      ++.+.||+..
T Consensus       360 ~~gl~i~~~~  369 (370)
T COG5276         360 NGGLSIIEYL  369 (370)
T ss_pred             CCCEEEEEec
Confidence            8889999853

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.47  E-value=16  Score=31.69  Aligned_cols=68  Identities=15%  Similarity=0.231  Sum_probs=36.6

Q ss_pred             EEeecccccccEEEEccCCcEEEEEeCCCCeEEEE-EcCC-----CcE--E-EEeecCC--CCcceEEEEecCCCCEEEE
Q 018248          172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVF-NTMD-----GSL--L-QEMRRGA--ERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       172 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw-d~~~-----~~~--~-~~~~~~~--~~~~i~~~~~s~~~~~l~~  240 (359)
                      ..+...-.....+++.++| +++ ++.. . |..| |...     ++.  + ..+....  +......++|.|||.+.++
T Consensus        65 ~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        65 NVFAEELSMVTGLAVAVGG-VYV-ATPP-D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             EEeecCCCCccceeEecCC-EEE-eCCC-e-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence            3343334456889999998 444 4444 3 4444 5421     121  1 1122210  1234778999999987776


Q ss_pred             EcC
Q 018248          241 SSD  243 (359)
Q Consensus       241 ~~~  243 (359)
                      -+.
T Consensus       141 ~G~  143 (367)
T TIGR02604       141 HGN  143 (367)
T ss_pred             ccc
Confidence            553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.21  E-value=24  Score=35.11  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=25.6

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDP   36 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~   36 (359)
                      .....++|+|.-.++|.++ .|.|++|-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3556789999999999999 99999997653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.12  E-value=15  Score=31.19  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             ccccEEEEcc-------CCcEEEEEeCCCCeEEEEEcCCCcEEEEeec--CCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          179 SRIASIAMTL-------DGRFVATASSKGTLIRVFNTMDGSLLQEMRR--GAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       179 ~~i~~~~~s~-------~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      ..+..+.|.+       .|.++++.-..+. |....+..+..+.....  ......+..+++.|||.++++...+|.|.
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4455666653       3445655555555 77777765533322111  11334799999999999998888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.85  E-value=23  Score=33.50  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             ccccEEEEccCCcEEEEEeCCCC----eEEEEEcCCCcEEEEe--ecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          179 SRIASIAMTLDGRFVATASSKGT----LIRVFNTMDGSLLQEM--RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~----~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      +.-..+.|-|+|..+++-..||.    .|.++. ++|-.-..+  ..+ ....+..++|.-....++.+ ..+.+++|-.
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~-~dEk~~~~~wn~~s~vlav~-~~n~~~lwtt  323 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVG-CDEKAFLENWNLLSTVLAVA-EGNLLKLWTT  323 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCC-chhhhhhhhhhHHHHHHHHh-hcceEEEEEc
Confidence            33456899999999999876653    144554 222111111  111 12345667776666555544 3456899877


Q ss_pred             cCC
Q 018248          253 KVD  255 (359)
Q Consensus       253 ~~~  255 (359)
                      .+-
T Consensus       324 kNy  326 (1243)
T COG5290         324 KNY  326 (1243)
T ss_pred             cce
Confidence            653

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.75  E-value=28  Score=33.71  Aligned_cols=113  Identities=18%  Similarity=0.160  Sum_probs=70.6

Q ss_pred             CCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCccee--eeecccCCCCc----------eeEEEEeccCCEEEEEecC
Q 018248            6 PITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIM--RRDFDRNPRGG----------TQLVSMLFRSNIICLVNSG   71 (359)
Q Consensus         6 ~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~--~~~~~~~h~~~----------v~~~~~~~~~~~~~~~~~~   71 (359)
                      ..+...++|+| +.+.||+.. .|...||++.......  ...+...+.+.          -.-+.|..+.+.++++.  
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--  222 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--  222 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--
Confidence            45677899998 456888888 9999999992111100  00110011121          22455655556666554  


Q ss_pred             CCCCCeEEEEECCCccEEe---eeccCcceeEEEEecc--eeEEE-ecCeEEEEEccc
Q 018248           72 PHQSNKVMIWDDHENRYLG---ELSFRSEVKNVRLRRD--RIVVV-LNQKVYVYNFTD  123 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~--~~~~~-~d~~i~i~d~~~  123 (359)
                         ...+.++|+++.....   ..+....|.++.-++.  +..++ ....|...++..
T Consensus       223 ---r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  223 ---RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             ---CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence               5788999988876533   2225578899988887  33333 888898888855

These proteins are found in fungi.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.34  E-value=13  Score=34.98  Aligned_cols=63  Identities=17%  Similarity=0.266  Sum_probs=45.3

Q ss_pred             CCcEEEEEeCCCCeEEEEEcCC-------C-------------cEEEEeecCCCCcceEEEEec--CCCCEEEEEcCCCc
Q 018248          189 DGRFVATASSKGTLIRVFNTMD-------G-------------SLLQEMRRGAERAEIYSLAFS--SNAQWLAASSDKGT  246 (359)
Q Consensus       189 ~~~~l~~~~~dg~~i~iwd~~~-------~-------------~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~  246 (359)
                      +...|+.+.+||. |.+|.+++       .             ++...+.   -....++++++  ...++||++++...
T Consensus       113 ~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~rlIAVSsNs~~  188 (717)
T PF08728_consen  113 GEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSRLIAVSSNSQE  188 (717)
T ss_pred             CeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcceEEEEecCCce
Confidence            4558889999999 99997621       1             0112222   23578999998  78889999988888


Q ss_pred             EEEEEccCC
Q 018248          247 VHVFGLKVD  255 (359)
Q Consensus       247 i~iw~~~~~  255 (359)
                      |.||-+...
T Consensus       189 VTVFaf~l~  197 (717)
T PF08728_consen  189 VTVFAFALV  197 (717)
T ss_pred             EEEEEEecc
Confidence            888877664

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=87.27  E-value=22  Score=32.14  Aligned_cols=236  Identities=11%  Similarity=0.025  Sum_probs=101.8

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ...+|..+.++..|.+ -+|++..+..||..+++.......+  ....+..+  ..+-..-..++    .|.-+++.+.+
T Consensus       163 ~d~~V~aLv~D~~g~l-WvgT~dGL~~fd~~~gkalql~s~~--~dk~I~al--~~d~qg~LWVG----TdqGv~~~e~~  233 (671)
T COG3292         163 KDTPVVALVFDANGRL-WVGTPDGLSYFDAGRGKALQLASPP--LDKAINAL--IADVQGRLWVG----TDQGVYLQEAE  233 (671)
T ss_pred             cCccceeeeeeccCcE-EEecCCcceEEccccceEEEcCCCc--chhhHHHH--HHHhcCcEEEE----eccceEEEchh
Confidence            4577888999988854 4566556677777655433222211  11233332  22333444555    46778888755


Q ss_pred             CccEEeeec--cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCCee
Q 018248           85 ENRYLGELS--FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQ  160 (359)
Q Consensus        85 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~  160 (359)
                      ..+......  ....|..+.-..+|.+-+ .++-+-.+........... +.+...-.+..+..|.++.+-+  +..++.
T Consensus       234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv--~t~~gi  311 (671)
T COG3292         234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWV--GTYGGI  311 (671)
T ss_pred             hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEee--eccCce
Confidence            422221111  334455555455554444 4443444444333222111 2222211223333343332222  445666


Q ss_pred             EEEEecCCeeeEEeecccc-cccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          161 VRVEDYGTKKSKYITAHAS-RIASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       161 v~~~~~~~~~~~~~~~~~~-~i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      +++-..+-.....+....+ .+..++.+|  .+..+.-...-|. +.+-+-.+|..++....- ....|+.+++..+|+.
T Consensus       312 v~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~g~l  389 (671)
T COG3292         312 VRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSRGRL  389 (671)
T ss_pred             EEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccCCcE
Confidence            6653322222122221111 111122222  1222222222333 444455556555543321 2245666666665544


Q ss_pred             EEEEcCCCcEEEEEccC
Q 018248          238 LAASSDKGTVHVFGLKV  254 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~  254 (359)
                      - .++...-+-.|+.++
T Consensus       390 W-lgs~q~GLsrl~n~n  405 (671)
T COG3292         390 W-LGSMQNGLSRLDNKN  405 (671)
T ss_pred             E-EEecccchhhhccCC
Confidence            3 344442355566555

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.25  E-value=21  Score=31.83  Aligned_cols=149  Identities=13%  Similarity=0.110  Sum_probs=76.2

Q ss_pred             EEEEecceeEEEecCeEEEEEccccee------eeeEeccCC---CceeeeeecCCCccEEEecCCCCeeEEE-EecCCe
Q 018248          100 NVRLRRDRIVVVLNQKVYVYNFTDLKL------VDQIETVVN---PTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTK  169 (359)
Q Consensus       100 ~~~~~~~~~~~~~d~~i~i~d~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~  169 (359)
                      .+.|-.+..++..++.|-++.-....-      +..+....+   ...-+-++-....+ +...|.....++- +...++
T Consensus       423 ~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssl-i~~dg~~~~kLykmDIErGk  501 (776)
T COG5167         423 VVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSL-IYLDGGERDKLYKMDIERGK  501 (776)
T ss_pred             EEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcce-EEecCCCcccceeeecccce
Confidence            344445555555788888886533221      111111100   11112222222333 3333444444444 777788


Q ss_pred             eeEEeecccccccEEEEccCCc--------EEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEecC----CCC
Q 018248          170 KSKYITAHASRIASIAMTLDGR--------FVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFSS----NAQ  236 (359)
Q Consensus       170 ~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~----~~~  236 (359)
                      .+.....|...  -+.|.|+.+        .| +|-.+.. |.-.|.+ .|..+....   .....+.-.||.    ..-
T Consensus       502 vveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~s-vFrIDPR~~gNKi~v~e---sKdY~tKn~Fss~~tTesG  574 (776)
T COG5167         502 VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYS-VFRIDPRARGNKIKVVE---SKDYKTKNKFSSGMTTESG  574 (776)
T ss_pred             eeeEeecCCcc--eeecCCchhHHhcCccceE-Eeecccc-eEEecccccCCceeeee---ehhccccccccccccccCc
Confidence            88888777654  567777533        33 3434444 5444544 343333222   122333334442    345


Q ss_pred             EEEEEcCCCcEEEEEccCCC
Q 018248          237 WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++|.++..|.|++||.-...
T Consensus       575 yIa~as~kGDirLyDRig~r  594 (776)
T COG5167         575 YIAAASRKGDIRLYDRIGKR  594 (776)
T ss_pred             eEEEecCCCceeeehhhcch
Confidence            99999999999999975543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.96  E-value=6.3  Score=34.29  Aligned_cols=157  Identities=14%  Similarity=0.124  Sum_probs=86.2

Q ss_pred             cCcceeEEEEecceeEEE--ecCeEEEEEcccceee-eeE-eccCCC----ce-eeeeecCCCccEEEecCCCCeeEEEE
Q 018248           94 FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLV-DQI-ETVVNP----TG-LCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~-~~~~~~----~~-~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      ....+..+-..|+|+.+.  ...++.++++.+.... +++ +...+.    +. .+.+ -.+...+++  ++.||.|.-|
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l-L~Gg~SLLv--~~~dG~vsQW  295 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL-LSGGFSLLV--VHEDGLVSQW  295 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH-HhCceeEEE--EcCCCceeee
Confidence            445677788899998887  6788888888443211 111 111111    11 1111 122222333  4578888774


Q ss_pred             e-cC-C-e----eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          165 D-YG-T-K----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       165 ~-~~-~-~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      - .. + .    .++.++-...++..+.-..+.+-+++-+..|. +.++.....+.+ .+..  --..+.-+++||++.+
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceeeeCcccch
Confidence            2 22 1 1    11222222233333332234456777788888 887764333332 2222  1125677899999999


Q ss_pred             EEEEcCCCcEEEEEccCCCCC
Q 018248          238 LAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      |++- +.|.++++.+++..+.
T Consensus       372 Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         372 LLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             heee-cCCceEEEEecCCCCC
Confidence            9864 4567999999987754

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.92  E-value=13  Score=29.01  Aligned_cols=45  Identities=18%  Similarity=0.160  Sum_probs=35.0

Q ss_pred             CEEEEEecCCCCCCeEEEEECC--CccEEeeeccCcceeEEEEecceeEEE
Q 018248           63 NIICLVNSGPHQSNKVMIWDDH--ENRYLGELSFRSEVKNVRLRRDRIVVV  111 (359)
Q Consensus        63 ~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~  111 (359)
                      +.++++.    ....|.+|++.  ..+.+..+..-+.|..+.++..|.+++
T Consensus        29 d~Lfva~----~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlv   75 (215)
T PF14761_consen   29 DALFVAA----SGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLV   75 (215)
T ss_pred             ceEEEEc----CCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEE
Confidence            5555554    23889999988  346677777668999999999999998

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.70  E-value=5  Score=36.90  Aligned_cols=74  Identities=7%  Similarity=0.176  Sum_probs=41.1

Q ss_pred             cCCCEEEEec-CCceEEEEcCC---Ccceeee-eccc-------------------CCCCceeEEEEec----cCCEEEE
Q 018248           16 QDHGCFATGT-ETGFRVYLSDP---YKPIMRR-DFDR-------------------NPRGGTQLVSMLF----RSNIICL   67 (359)
Q Consensus        16 ~~g~~l~~~~-d~~i~iw~~~~---~~~~~~~-~~~~-------------------~h~~~v~~~~~~~----~~~~~~~   67 (359)
                      ++...++++. ||.+.......   ....... .+..                   .........++..    ....++.
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666777777 99988777664   1111111 1100                   0012334455555    5567777


Q ss_pred             EecCCCCCCeEEEEECCCccEEeeec
Q 018248           68 VNSGPHQSNKVMIWDDHENRYLGELS   93 (359)
Q Consensus        68 ~~~~~~~d~~i~iwd~~~~~~~~~~~   93 (359)
                      ++    .|+++|+||+.+++++....
T Consensus       236 l~----~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LS----RDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EE----TTSEEEEEETTTTCEEEEEE
T ss_pred             Ee----CCCeEEEEECCCCeEEEEec
Confidence            77    79999999999999976654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.45  E-value=25  Score=31.79  Aligned_cols=136  Identities=11%  Similarity=0.051  Sum_probs=64.4

Q ss_pred             cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccccc---ccEEEEccC
Q 018248          113 NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASR---IASIAMTLD  189 (359)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~---i~~~~~s~~  189 (359)
                      .....++|. .|.....+.........+...+++.  +++..   ...++..+..++.+.........   =..+..-|+
T Consensus       127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~--ll~~~---~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~n  200 (477)
T PF05935_consen  127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGN--LLIGS---GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPN  200 (477)
T ss_dssp             EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS---EEEEE---BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred             CceEEEECC-CccEEEEEccCccccceeeEcCCCC--EEEec---CCceEEEcCCCCEEEeeecCCcccccccccEECCC
Confidence            356666664 5555555544332222233445554  34432   25666677777766655433322   356778899


Q ss_pred             CcEEEEEeC-------------CCCeEEEEEcCCCcEEEEeecCCC-------------------------CcceEEEEe
Q 018248          190 GRFVATASS-------------KGTLIRVFNTMDGSLLQEMRRGAE-------------------------RAEIYSLAF  231 (359)
Q Consensus       190 ~~~l~~~~~-------------dg~~i~iwd~~~~~~~~~~~~~~~-------------------------~~~i~~~~~  231 (359)
                      |++|+.+..             ... |...| .+|+.+..+....|                         =..++++.+
T Consensus       201 Gn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y  278 (477)
T PF05935_consen  201 GNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY  278 (477)
T ss_dssp             S-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred             CCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence            998887772             112 55556 66666655332111                         024788999


Q ss_pred             cC-CCCEEEEEcCCCcEEEEEccCCC
Q 018248          232 SS-NAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       232 s~-~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+ ++.+|+++-.-..|...|.++++
T Consensus       279 d~~dd~iivSsR~~s~V~~Id~~t~~  304 (477)
T PF05935_consen  279 DPSDDSIIVSSRHQSAVIKIDYRTGK  304 (477)
T ss_dssp             ETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred             eCCCCeEEEEcCcceEEEEEECCCCc
Confidence            88 66666666555567777755543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=85.85  E-value=17  Score=34.38  Aligned_cols=103  Identities=6%  Similarity=0.031  Sum_probs=60.8

Q ss_pred             CceeEEEEeccCCEEEEEecCCC-CCCeEEEEEC---CCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccc
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPH-QSNKVMIWDD---HENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDL  124 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~  124 (359)
                      +.-..++|-|.+..++....... ....|.++..   +-|+.-........+..++|+-....++  ..+.+++|-..+-
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy  326 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY  326 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce
Confidence            33345778888888877763221 2244555552   1223322333445566777876666555  7889999986554


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .-....+..-..+..+.|+|..+..++..
T Consensus       327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~  355 (1243)
T COG5290         327 HWYLKVERQIPGISYVKWHPEEKNTLLFR  355 (1243)
T ss_pred             EEEEEEeecCCCcceeeeccccCcEEEEe
Confidence            33222233334456789999888766665

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=84.87  E-value=21  Score=29.62  Aligned_cols=211  Identities=9%  Similarity=0.068  Sum_probs=103.3

Q ss_pred             ceEEEEEccCCCEEEE--ec-C----------CceEEEEcCCCcceeeeeccc--C-CCCceeEEEEeccC----CEEEE
Q 018248            8 TIHHLALNQDHGCFAT--GT-E----------TGFRVYLSDPYKPIMRRDFDR--N-PRGGTQLVSMLFRS----NIICL   67 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~--~~-d----------~~i~iw~~~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~----~~~~~   67 (359)
                      .|..+...+++++=+.  |. +          -.|.+||+.+.+......+..  . .......+.+....    +..++
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            4677888887776554  32 1          258899999988766666641  0 12234445555432    25666


Q ss_pred             EecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccCCCceeeeeec---
Q 018248           68 VNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQ---  144 (359)
Q Consensus        68 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---  144 (359)
                      ++...  .+-|.++|+.+++..+.+.+.     +...|+...+..+|...-|.  .+            +..++++|   
T Consensus        82 ItD~~--~~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~~--dg------------~~gial~~~~~  140 (287)
T PF03022_consen   82 ITDSG--GPGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQWP--DG------------IFGIALSPISP  140 (287)
T ss_dssp             EEETT--TCEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEET--TS------------EEEEEE-TTST
T ss_pred             EeCCC--cCcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEecC--CC------------ccccccCCCCC
Confidence            66553  479999999999877666531     11112222222223222111  12            22233332   


Q ss_pred             CCCccEEEecCCCCeeEEEE---ecCC---------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-
Q 018248          145 NAGPMVMACPGLLKGQVRVE---DYGT---------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-  211 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~---~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-  211 (359)
                      +++.++... -+....-++-   ..+.         ..++.+-........++++++|.+.++--..+. |..|+..+. 
T Consensus       141 d~r~LYf~~-lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a-I~~w~~~~~~  218 (287)
T PF03022_consen  141 DGRWLYFHP-LSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA-IGCWDPDGPY  218 (287)
T ss_dssp             TS-EEEEEE-TT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE-EEEEETTTSB
T ss_pred             CccEEEEEe-CCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe-EEEEeCCCCc
Confidence            332322221 1111112221   1111         112222211246678899999998888888888 999998651 


Q ss_pred             --cEEEEeecCCC-CcceEEEEecC--CCCEEEEE
Q 018248          212 --SLLQEMRRGAE-RAEIYSLAFSS--NAQWLAAS  241 (359)
Q Consensus       212 --~~~~~~~~~~~-~~~i~~~~~s~--~~~~l~~~  241 (359)
                        +....+..... -..+.++.+.+  +|.+.+..
T Consensus       219 ~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  219 TPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             -GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence              12222222112 35778899988  67655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK13684 Ycf48-like protein; Provisional

Probab=84.36  E-value=25  Score=30.00  Aligned_cols=113  Identities=16%  Similarity=0.112  Sum_probs=59.3

Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL  213 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~  213 (359)
                      .+..+.+.+++  .++++ | ..|.+.. .+..++.-... ..-...++++.+.++++.++++ ..|. +.+=....|..
T Consensus       174 ~~~~i~~~~~g--~~v~~-g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~s  247 (334)
T PRK13684        174 VVRNLRRSPDG--KYVAV-S-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLES  247 (334)
T ss_pred             eEEEEEECCCC--eEEEE-e-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCc
Confidence            34455565654  34554 3 3666655 23333322222 2334678999999999877665 4565 43222334433


Q ss_pred             EEEeecC--CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          214 LQEMRRG--AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       214 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      -.....+  .....+.++.+.|+++.+++ +.+|.+. ...+.++
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~  290 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK  290 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC
Confidence            2222211  01235788999998876654 5567444 3444433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.20  E-value=12  Score=33.41  Aligned_cols=76  Identities=16%  Similarity=0.262  Sum_probs=48.4

Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEc----------CCCcEEEEee---------cCCCCcceEEEEecCCC---CE
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNT----------MDGSLLQEMR---------RGAERAEIYSLAFSSNA---QW  237 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~----------~~~~~~~~~~---------~~~~~~~i~~~~~s~~~---~~  237 (359)
                      .|..+..++.|..++-++.+|.  .|..+          ++|+.....+         .....-.+..++|+|+.   ..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            4566777888888888888874  33333          2343222111         00011256678999976   56


Q ss_pred             EEEEcCCCcEEEEEccCCCC
Q 018248          238 LAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~  257 (359)
                      |..-+.|..+|+||+.....
T Consensus       183 L~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEEecCcEEEEEecCCcch
Confidence            77778899999999987653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.08  E-value=29  Score=30.57  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=36.8

Q ss_pred             EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          192 FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       192 ~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .++.++.++. +.||.  ..+.+........+-.|.-..|..-...|++-+.+|.+.+-=+-+..
T Consensus       302 ~llV~t~t~~-LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP  363 (418)
T PF14727_consen  302 NLLVGTHTGT-LLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP  363 (418)
T ss_pred             EEEEEecCCe-EEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence            4677778888 88885  34444444332111122222233334578888999999998887755

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.00  E-value=13  Score=26.50  Aligned_cols=74  Identities=16%  Similarity=0.260  Sum_probs=49.4

Q ss_pred             CceEEEEEcc-----CCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEe---ccCCEEEEEecCCCCCCeE
Q 018248            7 ITIHHLALNQ-----DHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSML---FRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         7 ~~v~~~~~s~-----~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~~~~~~~~d~~i   78 (359)
                      ..|++++-.+     +...|+.|+...+..||++.....+.+.+    .+.+.++.+-   ..+..++++++    +..|
T Consensus        48 ~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivGG----ncsi  119 (136)
T PF14781_consen   48 QEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVGG----NCSI  119 (136)
T ss_pred             CceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC----ccceeEEEEEecCCCCCcEEEECc----eEEE
Confidence            4566665443     45678899999999999998888877777    4666665543   33456677773    4667


Q ss_pred             EEEECCCccE
Q 018248           79 MIWDDHENRY   88 (359)
Q Consensus        79 ~iwd~~~~~~   88 (359)
                      .-+|.+..+.
T Consensus       120 ~Gfd~~G~e~  129 (136)
T PF14781_consen  120 QGFDYEGNEI  129 (136)
T ss_pred             EEeCCCCcEE
Confidence            7777444333

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=83.67  E-value=25  Score=29.44  Aligned_cols=72  Identities=19%  Similarity=0.394  Sum_probs=52.8

Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc----ceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA----EIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      -+++|...++|.+|+++-.-.. |.+.|-++|+.+-.+.+. ..+    .-..+++-.|-+++-....++.|.++|=.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~-~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGK-RNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCC-CCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            3677788889999998887777 999999999998888643 111    11224555566677666788999999984

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=83.60  E-value=47  Score=32.65  Aligned_cols=176  Identities=14%  Similarity=0.120  Sum_probs=90.7

Q ss_pred             ceEEEEcCCCcceeeeecccC-CCCceeEEEEeccCCE-EEEEecCCC--------CCCeEEEEECC-CccEE---eeec
Q 018248           28 GFRVYLSDPYKPIMRRDFDRN-PRGGTQLVSMLFRSNI-ICLVNSGPH--------QSNKVMIWDDH-ENRYL---GELS   93 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~-~~~~~~~~~--------~d~~i~iwd~~-~~~~~---~~~~   93 (359)
                      .|+++|..+++......+... -.-.+..+.++..+.. +..++....        .++.++.|++. .|+.+   ....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            377777776666555554311 0112333344433333 222222111        34557777643 34422   2222


Q ss_pred             cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeee
Q 018248           94 FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKS  171 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~  171 (359)
                      -++.+..++-.. +.+++ ....+++||+...++++..+...-+..+..+......  ++.+...++...+ |....+.+
T Consensus       934 ~~~~v~Ai~~f~-~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~R--I~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  934 IPGPVGAICPFQ-GRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGAR--IVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             CCccceEEeccC-CEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceE--EEEeeccceEEEEEEecCCCeE
Confidence            344554444332 35555 8899999999776666555433333344444445554  4443445555444 88877777


Q ss_pred             EEeecc--cccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          172 KYITAH--ASRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       172 ~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      ..+...  ...|+++.+- |..-+|.+..-|. +.+-.+
T Consensus      1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGN-i~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGN-IAVVRI 1047 (1205)
T ss_pred             EEEeCCCccceeeEEEEe-cCCceeeccccCc-EEEEEC
Confidence            766543  3345555553 4445666766676 665554

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=83.25  E-value=3.7  Score=19.89  Aligned_cols=25  Identities=8%  Similarity=0.008  Sum_probs=19.6

Q ss_pred             cEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          309 VQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      .|.+++.++  ++++++++-+.+++|.
T Consensus         3 ~i~aia~g~--~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGD--SWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccC--CEEEEEeCCCeEEecC
Confidence            455666665  5999999999999983

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=82.96  E-value=8.4  Score=36.94  Aligned_cols=77  Identities=23%  Similarity=0.230  Sum_probs=50.1

Q ss_pred             eeEEEEecCCeeeEEe-ecccccccEEEEccCCcEEEE-EeCCC---C-eEEEEEcCC-CcEEEEeecCCCCcceEEEEe
Q 018248          159 GQVRVEDYGTKKSKYI-TAHASRIASIAMTLDGRFVAT-ASSKG---T-LIRVFNTMD-GSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~-~~~dg---~-~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      +.+.+-+.++...+.+ ..+..+|.+.+|||||+.||. .+.++   . .|++-|+.+ +..+..+..  ....|..-..
T Consensus       329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v--e~aaiprwrv  406 (912)
T TIGR02171       329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV--ENAAIPRWRV  406 (912)
T ss_pred             CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec--ccccccceEe
Confidence            4666666666555555 567888999999999999987 44444   2 177878765 333344443  3456666666


Q ss_pred             cCCCCE
Q 018248          232 SSNAQW  237 (359)
Q Consensus       232 s~~~~~  237 (359)
                      .++|..
T Consensus       407 ~e~gdt  412 (912)
T TIGR02171       407 LENGDT  412 (912)
T ss_pred             cCCCCe
Confidence            666654

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=82.18  E-value=4.4  Score=19.69  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=18.6

Q ss_pred             ceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          225 EIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      ....++.+++|+++++=+....|++|
T Consensus         3 ~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            35677888888888777777766654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.05  E-value=27  Score=28.87  Aligned_cols=52  Identities=15%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc------CCCcEEEEEccCCC
Q 018248          203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS------DKGTVHVFGLKVDS  256 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~iw~~~~~~  256 (359)
                      |++||..+.+-..--. + -.+.|+++.|..+.++++.|.      ....+..||+++..
T Consensus        18 lC~yd~~~~qW~~~g~-~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   18 LCLYDTDNSQWSSPGN-G-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEEEECCCCEeecCCC-C-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            9999987665443222 2 457899999987777777664      34568888888765

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=81.47  E-value=38  Score=30.02  Aligned_cols=30  Identities=17%  Similarity=0.190  Sum_probs=24.9

Q ss_pred             cEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          309 VQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .+..++..+..+.|++.+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            477888888889999999999999999987

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=81.27  E-value=4  Score=26.55  Aligned_cols=29  Identities=3%  Similarity=-0.054  Sum_probs=24.5

Q ss_pred             EEEeeecccCCEEEEEec-CCeEEEEEeCC
Q 018248          310 QYLVGFGRQNNTIVIVGL-DGSYYKCEFDP  338 (359)
Q Consensus       310 v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~  338 (359)
                      .+.++++|+++.|++++. .+.|++|+...
T Consensus        56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            368999999999988887 78999998753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=81.02  E-value=56  Score=31.71  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=51.9

Q ss_pred             cccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCc----EEEEeecCC---------CCcceEEEEecCCCCEEEEEcC
Q 018248          178 ASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGS----LLQEMRRGA---------ERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       178 ~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~----~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                      ..+...++|+|. .+.||+....|. ..||++....    ....+....         ....-..+.|.++...|+.++.
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCc-EEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence            346778999984 458999999999 9999992111    111111100         1123347889888888887765


Q ss_pred             CCcEEEEEccCCCC
Q 018248          244 KGTVHVFGLKVDSG  257 (359)
Q Consensus       244 dg~i~iw~~~~~~~  257 (359)
                      . .+.++|+++...
T Consensus       224 ~-~l~~~d~~~~~~  236 (765)
T PF10214_consen  224 S-KLMLIDFESNWQ  236 (765)
T ss_pred             C-ceEEEECCCCCc
Confidence            4 589999998763

These proteins are found in fungi.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=80.28  E-value=7  Score=20.84  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=25.2

Q ss_pred             cCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEE
Q 018248           61 RSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRL  103 (359)
Q Consensus        61 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~  103 (359)
                      +++.++++..   .++.|.++|..+++.+..+........+.|
T Consensus         2 d~~~lyv~~~---~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNS---GSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeC---CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            3444444332   358999999988888887774444444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		5e-22
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-19
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-04

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 41/298 (13%)
Query: 14  LNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH 73
            NQD  C    T   F +Y   P K IM ++    P  GT  + ML R+N I  V++   
Sbjct: 22  FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEM---PDAGT--IRMLHRTNYIAFVST--- 73
Query: 74  QSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIETV 133
           +   + IWDD + + +  +   + VK+               + ++ F +    ++I   
Sbjct: 74  KKELLHIWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPW--NKITED 131
Query: 134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK------KSKYITAHASRIASIAMT 187
           +   G+C+ +   G +V +    L GQ+ V    T       K   + AHA+ +  + + 
Sbjct: 132 IKFGGVCEFAN--GLLVYSNEFNL-GQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRLN 188
Query: 188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV 247
             G  VAT S  GTLIRVF T +G L++E RRG +R  I  + +S +   LA  SDK T+
Sbjct: 189 RKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWTL 248
Query: 248 HVFGLKVDSGSPGTSKLHSASEPNLXXXXXXXXXXFRFIRGVLPKYFSSKWSMAQFRL 305
           HVF +  D+     +K H   +                   +  KYF S+WS+  F+L
Sbjct: 249 HVFEVFNDA----ENKRHVLKD------------------WINIKYFQSEWSICNFKL 284

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 140/321 (43%), Gaps = 60/321 (18%)
Query: 5   DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNI 64
           +P+T +    NQD  C    T   F +Y   P   IM ++     +     V ML R+N 
Sbjct: 20  NPVTDYEF--NQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSK-----VRMLHRTNY 72
Query: 65  ICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTD- 123
           +  V +G  +   V IWDD + + +  +   + VK+               + V+ F + 
Sbjct: 73  VAFV-TGVKEV--VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP 129
Query: 124 -LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-----------EDYGTK-- 169
             ++ D I       G+C+ S   G +V +    L GQ+ +           +D G +  
Sbjct: 130 WKRITDDIRF----GGVCEFSN--GLLVYSNEFNL-GQIHITKLQSSGSATTQDQGVQQK 182
Query: 170 ----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE 225
               K   I AH + I  + +      VAT S  GT+IRVF T DG L++E RRG +RA+
Sbjct: 183 AILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD 242
Query: 226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLXXXXXXXXXXFRF 285
           +  + +S++   LA  SDK T+HVF +  D      +K H+                   
Sbjct: 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD----NKRHA------------------- 279
Query: 286 IRGVLP-KYFSSKWSMAQFRL 305
           ++G +  KYF S+WS+  F+L
Sbjct: 280 LKGWINMKYFQSEWSLCNFKL 300

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 167 GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI 226
           G K+   + AH+S +  +A + DG+ +A+AS   T ++++N  +G LLQ +      + +
Sbjct: 5   GVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSV 60
Query: 227 YSLAFSSNAQWLAASSDKGTVHVF 250
           + +AFS + Q +A++SD  TV ++
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLW 84

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 161 VRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR 219
           V+V D  T +    +  H + + S+ ++ DG   A++   G + R+++   G  L EM  
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDG-VARLWDLTKGEALSEMAA 236
Query: 220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253
           GA    I  + FS N  W+ A+++KG + +F L+
Sbjct: 237 GAP---INQICFSPNRYWMCAATEKG-IRIFDLE 266

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 169 KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS 228
           KK   +      I SIA + DG+++A+ +  G +I +F+   G LL  +   A    I S
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEGHA--MPIRS 211
Query: 229 LAFSSNAQWLAASSDKGTVHVFGLK 253
           L FS ++Q L  +SD G + ++ ++
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQ 236

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
           H S I ++  + DG  +A+A   G  I ++N    +  + M   + + E++SLAFS N  
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGE-IMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 237 WLAASSDKGTVHVFGLK----VDSGSPGTSKLHSASEPN 271
           WLAA++  G + VF L     VD   P  +   +A+EP+
Sbjct: 251 WLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPH 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.48
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.32
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.32
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.3
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.28
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.24
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.03
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.95
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.94
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.92
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.9
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.84
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.78
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.77
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.76
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.65
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.65
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.59
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.55
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.55
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.48
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.37
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.34
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.32
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.3
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.27
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.22
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.19
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.18
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.14
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.14
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.01
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.96
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.56
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.44
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.4
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.38
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.26
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.25
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.06
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.06
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.06
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.05
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.84
3ott_A	758	Two-component system sensor histidine kinase; beta	96.68
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.34
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.15
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.0
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.98
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.77
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.66
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.62
3ott_A	758	Two-component system sensor histidine kinase; beta	95.51
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.73
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.51
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.98
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.65
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.46
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.4
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.39
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.55
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.64
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.52
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.29
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.07
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.63
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	82.16
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.9
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.64
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	80.4
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.29

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.5e-47  Score=318.75  Aligned_cols=282  Identities=16%  Similarity=0.211  Sum_probs=247.7

Q ss_pred             CCCCCceEEEEEccC----CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            3 QPDPITIHHLALNQD----HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~----g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      +.|.+.|++++|+|+    +.+|++|+ |+.|+||++...+......+. +|...|..++++++...++.++    .|+.
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s----~D~~  103 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSS----LDAH  103 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEE----TTSE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEe----CCCc
Confidence            579999999999985    67899999 999999999876555555666 9999999999999888887777    7999


Q ss_pred             EEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           78 VMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      |++||+.+++.+..+. +...+.+++|+|++.+++   .++.|++|++++++....+..+...+..++|+|+++.  +++
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--las  181 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY--LAS  181 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE--EEE
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE--EEE
Confidence            9999999999998887 788899999999999888   7899999999999998888888888999999998875  665


Q ss_pred             cCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          154 PGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       154 ~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                       |+.|+.|++|+.. ++.+..+.+|..+|.+++|+|++++|++++.|+. |++||+++++.+..+..  |...|.+++|+
T Consensus       182 -g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~s  257 (321)
T 3ow8_A          182 -GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLNVAFC  257 (321)
T ss_dssp             -EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEEEEEC
T ss_pred             -EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEEEEEC
Confidence             6679999998875 4677888999999999999999999999999999 99999999999988887  77899999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL  312 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (359)
                      |++++|++++.|++|+|||+.+++..                                          ..+..+.+.|..
T Consensus       258 p~~~~l~s~s~D~~v~iwd~~~~~~~------------------------------------------~~~~~h~~~v~~  295 (321)
T 3ow8_A          258 PDDTHFVSSSSDKSVKVWDVGTRTCV------------------------------------------HTFFDHQDQVWG  295 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEE------------------------------------------EEECCCSSCEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEE------------------------------------------EEEcCCCCcEEE
Confidence            99999999999999999999876511                                          113345678999


Q ss_pred             eeecccCCEEEEEecCCeEEEEEeC
Q 018248          313 VGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       313 ~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ++|+|+++.|++++.||.|++|+++
T Consensus       296 v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          296 VKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-46  Score=324.15  Aligned_cols=278  Identities=13%  Similarity=0.175  Sum_probs=247.4

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..+|++++|+|++.+|++|+ |+.|+|||+++++..  ..+. +|...|..++|+++++.++.++    .|++|++||
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~-~h~~~V~~v~~~~~~~~l~sgs----~D~~i~iwd  178 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCS----ADMTIKLWD  178 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSCCCEEE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-ccCCcEEEEEEcCCCCEEEEEe----CCCeEEEEe
Confidence            4889999999999999999999 999999999987655  4454 8999999999999999888777    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +.+++++..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..+.+++++..  +++ |+.|
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~--l~s-~s~D  255 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL--IAS-CSND  255 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE--EEE-EETT
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCE--EEE-EcCC
Confidence            99999999988 999999999999998777   8999999999999999999999999999999888764  565 6679


Q ss_pred             eeEEEEecCC-eeeEEeecccccccEEEEccC--------------------CcEEEEEeCCCCeEEEEEcCCCcEEEEe
Q 018248          159 GQVRVEDYGT-KKSKYITAHASRIASIAMTLD--------------------GRFVATASSKGTLIRVFNTMDGSLLQEM  217 (359)
Q Consensus       159 ~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~~i~iwd~~~~~~~~~~  217 (359)
                      +.|++|+... .....+..|...|.+++|+|+                    +.+|++|+.|+. |++||+++++++..+
T Consensus       256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTL  334 (410)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCceEEEE
Confidence            9999998765 566778899999999999996                    678999999999 999999999999999


Q ss_pred             ecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecc
Q 018248          218 RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK  297 (359)
Q Consensus       218 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (359)
                      .+  |...|.+++|+|++++|++++.||.|++||+.+++..                                       
T Consensus       335 ~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---------------------------------------  373 (410)
T 1vyh_C          335 VG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---------------------------------------  373 (410)
T ss_dssp             EC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---------------------------------------
T ss_pred             EC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---------------------------------------
Confidence            87  7789999999999999999999999999999876522                                       


Q ss_pred             cceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                         ..+..|.+.|.+++|+|++++|++|+.||.|++|++
T Consensus       374 ---~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          374 ---KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ---EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             ---EEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence               124456778999999999999999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.5e-45  Score=308.89  Aligned_cols=279  Identities=13%  Similarity=0.103  Sum_probs=242.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+||+++|++|+ |+.|++||..+++....  +. .|...+..++++++++.++.++    .|+.|++|+
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~s~~----~d~~v~iw~  125 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA--IP-LRSSWVMTCAYAPSGNYVACGG----LDNICSIYN  125 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EE-CSSSCEEEEEECTTSSEEEEEE----TTCEEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE--ee-cCCccEEEEEECCCCCEEEEEe----CCCeEEEEE
Confidence            5899999999999999999999 99999999988766533  33 6889999999999999888877    789999999


Q ss_pred             CCCcc----EEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           83 DHENR----YLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        83 ~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      +.+++    ....+. |...|.++.|++++.++.  .|+.|++||+++++.+..+..|...+..++|+|++..  +++ |
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s-g  202 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL--FVS-G  202 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEE-E
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE--EEE-E
Confidence            88753    444555 889999999999998766  8999999999999999999999999999999998764  555 6


Q ss_pred             CCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          156 LLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       156 ~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +.|+.|++|+... .....+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+....+...|.+++|+|+
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence            6899999998754 667788999999999999999999999999999 99999999998887764334458999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      |++|++|+.||.|++||+.+++..                                          ..+..|.+.|.+++
T Consensus       282 g~~l~~g~~d~~i~vwd~~~~~~~------------------------------------------~~~~~h~~~v~~~~  319 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWDALKADRA------------------------------------------GVLAGHDNRVSCLG  319 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEE------------------------------------------EEEECCSSCEEEEE
T ss_pred             CCEEEEECCCCeEEEEEcccCcEe------------------------------------------eEeecCCCcEEEEE
Confidence            999999999999999999876511                                          12445678899999


Q ss_pred             ecccCCEEEEEecCCeEEEEE
Q 018248          315 FGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      |+|++++|++|+.||.|++|+
T Consensus       320 ~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.1e-44  Score=305.11  Aligned_cols=281  Identities=11%  Similarity=0.042  Sum_probs=241.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|++++|+|++++|++|+ |+.|++||..+++......   .|...+..++++|++..++.++    .|+.+++|+
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~lasg~----~d~~i~v~~  134 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCTWVMACAYAPSGCAIACGG----LDNKCSVYP  134 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCEEEECTTSSEEEEES----TTSEEEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCCCEEEEEECCCCCEEEEee----CCCCEEEEE
Confidence            5899999999999999999999 9999999998776654333   5788899999999999888777    789999999


Q ss_pred             CCCc------cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           83 DHEN------RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        83 ~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      +...      .....+. |...|.+++|+|++..++   .|++|++||+++++.+..+.+|...+.+++++|+.+..+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            7643      2334444 889999999999987666   89999999999999999999999999999999876555577


Q ss_pred             ecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          153 CPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      + |+.|+.|++|+.+ ++.+..+..|...|.+++|+|++.+|++++.|+. |++||+++++.+..+..+.+...+.+++|
T Consensus       215 s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          215 S-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             E-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             E-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            6 6689999999875 4667788999999999999999999999999999 99999999988877765444457899999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY  311 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (359)
                      +|++++|++++.|+.|++||+.+++..                                          ..+..|.+.|.
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~------------------------------------------~~l~~h~~~v~  330 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRV------------------------------------------SILFGHENRVS  330 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEE------------------------------------------EEECCCSSCEE
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceE------------------------------------------EEEECCCCcEE
Confidence            999999999999999999999876511                                          11344678899


Q ss_pred             EeeecccCCEEEEEecCCeEEEEE
Q 018248          312 LVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       312 ~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      +++|+||+++|++|+.||.|++|+
T Consensus       331 ~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999994

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-44  Score=303.75  Aligned_cols=293  Identities=14%  Similarity=0.188  Sum_probs=237.0

Q ss_pred             CCCC-ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPI-TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~-~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|.. .|.+++|+|+|++||+|+ |+.|+||+++++.......+..+|...|..++|+++++.++.++    .|+.+++|
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s----~D~~v~iw   88 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS----FDATTCIW   88 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE----TTSCEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE----CCCcEEEE
Confidence            5666 999999999999999999 99999999987654433444348999999999999999988888    79999999


Q ss_pred             ECCCc--cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           82 DDHEN--RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        82 d~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      |+.++  +.+..+. |...|.+++|+|++.+++   .|+.|++||+.++   +.+..+..|...+..++|+|+++.  ++
T Consensus        89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--l~  166 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL--LA  166 (345)
T ss_dssp             EECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC--EE
T ss_pred             EccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE--EE
Confidence            98776  4566676 899999999999998888   7999999999765   345667788889999999999875  55


Q ss_pred             ecCCCCeeEEEEecCCe---eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC---------------cEE
Q 018248          153 CPGLLKGQVRVEDYGTK---KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG---------------SLL  214 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~---------------~~~  214 (359)
                      + ++.|+.|++|+....   ....+.+|...|.+++|+|+|++|++++.|+. |++||....               +++
T Consensus       167 s-~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          167 S-ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             E-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             E-EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCcccee
Confidence            5 667999999887653   34678899999999999999999999999999 999996432               233


Q ss_pred             EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEE
Q 018248          215 QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYF  294 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (359)
                      ..+.. .|...|.+++|+|++..|++++.|+.|++|+........                    ...+.+..       
T Consensus       245 ~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~--------------------~~~~~~~~-------  296 (345)
T 3fm0_A          245 CTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ--------------------QPTFSLTA-------  296 (345)
T ss_dssp             EEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT--------------------SCCEEEEE-------
T ss_pred             EEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc--------------------eeeEEEEe-------
Confidence            34443 367899999999999999999999999999998754211                    00000000       


Q ss_pred             ecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCC
Q 018248          295 SSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~  338 (359)
                            .....|.+.|++++|+|++ ..|++|+.||.|++|++..
T Consensus       297 ------~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          297 ------HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             ------EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             ------eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence                  0012456789999999987 5999999999999999976

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=305.06  Aligned_cols=280  Identities=13%  Similarity=0.111  Sum_probs=224.0

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCC----------CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCC
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDP----------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQ   74 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~   74 (359)
                      |...|.+++|+|||++|++++|+++++||...          ........+  .|...|..++|++++ .++.++    .
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~-~l~~~s----~  101 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGER-GILVAS----D  101 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTT-EEEEEE----T
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCC-eEEEEE----C
Confidence            56789999999999999998888888887421          111111112  346779999998874 555555    6


Q ss_pred             CCeEEEEECCCccEEeee-----ccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           75 SNKVMIWDDHENRYLGEL-----SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      ||.|++||+.+++.+..+     .|...|.+++|+|++++++   .|++|++||+++++.+..+.+|...+..++|++++
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence            899999999988755433     3889999999999999888   79999999999999999999999999999999998


Q ss_pred             CccEEEecCCCCeeEEEEecCC-eeeEEe--ecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCC
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT-KKSKYI--TAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAE  222 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~--~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~  222 (359)
                      ... +++ ++.|+.|++|+.+. +....+  ..+...+.+++|+|+ +++|++|+.|+. |++||+++++++..+..  |
T Consensus       182 ~~~-l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~--h  256 (344)
T 4gqb_B          182 DSV-FLS-CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV--H  256 (344)
T ss_dssp             TTE-EEE-EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC--C
T ss_pred             CCc-eee-eccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC--C
Confidence            763 343 66899999998765 445554  345567899999985 568999999999 99999999999999987  7


Q ss_pred             CcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee
Q 018248          223 RAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA  301 (359)
Q Consensus       223 ~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (359)
                      ...|++++|+|++ ++|++++.|++|+|||+++++.                                           .
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-------------------------------------------~  293 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-------------------------------------------F  293 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-------------------------------------------E
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-------------------------------------------E
Confidence            7899999999998 5799999999999999987641                                           0


Q ss_pred             EEeecCCcEEEeeecccCC-EEEEEecCCeEEEEEeCCC
Q 018248          302 QFRLPENVQYLVGFGRQNN-TIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       302 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~  339 (359)
                      .+..|.+.|++++|+|+++ .|++++.||+|++|+++.+
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            1334678899999999986 5678999999999999763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-43  Score=295.33  Aligned_cols=290  Identities=14%  Similarity=0.195  Sum_probs=238.2

Q ss_pred             CCCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcce---eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            3 QPDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPI---MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      ..|.++|.+++|+|++ ++|++|+ |+.|++|++......   ....+. +|...|..++++++++.++.++    .|++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s----~D~~   88 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSAS----WDKT   88 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEE----TTSE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEe----CCCE
Confidence            3699999999999965 8999999 999999998743322   234455 8999999999999999988888    7999


Q ss_pred             EEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC----cc
Q 018248           78 VMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG----PM  149 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  149 (359)
                      |++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||++ ++.+..+..|...+..+.+.|...    ..
T Consensus        89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred             EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence            9999999999999888 999999999999998887   89999999995 566778888888899999988643    33


Q ss_pred             EEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248          150 VMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS  228 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~  228 (359)
                      .+++ ++.|+.|++|+... +....+.+|...|.+++|+|++++|++++.|+. |++||+.+++.+..+..   ...|.+
T Consensus       168 ~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---~~~v~~  242 (319)
T 3frx_A          168 TIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---QDEVFS  242 (319)
T ss_dssp             EEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---CSCEEE
T ss_pred             EEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CCcEEE
Confidence            4665 66899999999875 556678899999999999999999999999999 99999999999988874   368999


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248          229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN  308 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      ++|+|++.+|++++.++ +++|+++.....                                 ..+.... ......+..
T Consensus       243 ~~~sp~~~~la~~~~~~-i~v~~~~~~~~~---------------------------------~~~~~~~-~~~~~~~~~  287 (319)
T 3frx_A          243 LAFSPNRYWLAAATATG-IKVFSLDPQYLV---------------------------------DDLRPEF-AGYSKAAEP  287 (319)
T ss_dssp             EEECSSSSEEEEEETTE-EEEEEETTEEEE---------------------------------EEECCCC-TTCCGGGCC
T ss_pred             EEEcCCCCEEEEEcCCC-cEEEEeCcCeee---------------------------------eccCccc-cccccCcCc
Confidence            99999999999887654 999999865310                                 0000000 000112335


Q ss_pred             cEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          309 VQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .+.+++|+|||++|++|+.||.|++|++..
T Consensus       288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            678999999999999999999999999865

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.4e-43  Score=291.02  Aligned_cols=280  Identities=11%  Similarity=0.142  Sum_probs=234.4

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.+.|.+++|+|++++|++|+ |+.|++||++++...  ..+. +|...+..++++++++.++.++    .|+.|++||
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~s----~d~~i~vwd   83 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGS----DDFRIRVFN   83 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--EEee-ccCCcEEEEEEeCCCCEEEEEC----CCCEEEEEE
Confidence            4789999999999999999999 999999999986554  3444 7899999999999999988888    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +.+++.+..+. |...|.+++|+|++.+++   .|++|++||++++ .....+..|...+.+++|+|.+.. .+++ |+.
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s-gs~  161 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFAS-GCL  161 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT-EEEE-EET
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC-EEEE-EeC
Confidence            99999999988 999999999999998887   8999999999876 556678889999999999995443 3555 668


Q ss_pred             CeeEEEEecCC-eeeEEe-ecccccccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          158 KGQVRVEDYGT-KKSKYI-TAHASRIASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~-~~~~~~i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      |+.|++|+... .....+ ..|...+..+.|+|  ++++|++++.|+. |++||+++++++..+.+  |...|.+++|+|
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~~~~~~p  238 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSFAVFHP  238 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEEEEEECS
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEEEEEECC
Confidence            99999999754 333333 45667899999987  7789999999999 99999999999999987  778999999999


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      ++++|++++.||+|++||+++++..                                          ..+..+.+.+.++
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~------------------------------------------~~~~~~~~~~~~~  276 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVE------------------------------------------KTLNVGLERSWCI  276 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEE------------------------------------------EEECCSSSSEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcee------------------------------------------eeccCCCccEEEE
Confidence            9999999999999999999887611                                          1133445678999


Q ss_pred             eecccCC--EEEEEecCCeEEEEEeCC
Q 018248          314 GFGRQNN--TIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       314 ~~s~~~~--~l~~~~~dg~i~v~~~~~  338 (359)
                      +|+|+++  ++++|+.|| +.+|.+..
T Consensus       277 ~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          277 ATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             EECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             EECCCCCceEEEEecCCc-eEEEEecc
Confidence            9999875  477776666 66776653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.5e-44  Score=305.05  Aligned_cols=280  Identities=15%  Similarity=0.156  Sum_probs=221.4

Q ss_pred             CCCCceEEEEEccCCCEEEEec-------CCceEEEEcCCCcce---eeeecccCCCCceeEEEEeccCCEEEEEecCCC
Q 018248            4 PDPITIHHLALNQDHGCFATGT-------ETGFRVYLSDPYKPI---MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-------d~~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~   73 (359)
                      .|...|.+++|||||++|++|+       |+.|++|+..++...   .....  +|...|..++|++++. +++++    
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~s~d~~-~l~~s----  112 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGV--QTEAGVTDVAWVSEKG-ILVAS----  112 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEE--ECSSCEEEEEEETTTE-EEEEE----
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccC--CCCCCEEEEEEcCCCC-EEEEE----
Confidence            3889999999999999999998       356888887654322   11222  6888999999998764 44445    


Q ss_pred             CCCeEEEEECCCccEEeee-----ccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248           74 QSNKVMIWDDHENRYLGEL-----SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                      .|+.|++||+.+++.....     .|...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..++|+++
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            5899999999888654332     3788999999999998887   7999999999999999999999999999999999


Q ss_pred             CCccEEEecCCCCeeEEEEecCC-eeeEE--eecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGT-KKSKY--ITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~-~~~~~--~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      ++..++.  ++.|+.|++|+.+. +....  ...|...+.+++|+|+ +.+|++|+.|+. |++||+++++.+..+..  
T Consensus       193 ~~~~~~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~--  267 (357)
T 4g56_B          193 KDTIFLS--CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV--  267 (357)
T ss_dssp             CSSCEEE--EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC--
T ss_pred             CCceeee--eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec--
Confidence            8764433  45799999998765 33333  3456778999999997 468999999999 99999999999988886  


Q ss_pred             CCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccce
Q 018248          222 ERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSM  300 (359)
Q Consensus       222 ~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (359)
                      |...|++++|+|++ ++|++++.|++|+|||+++++..                                 +        
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~---------------------------------~--------  306 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF---------------------------------R--------  306 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE---------------------------------E--------
T ss_pred             cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe---------------------------------E--------
Confidence            77899999999987 57999999999999999876511                                 0        


Q ss_pred             eEEeecCCcEEEeeecc-cCCEEEEEecCCeEEEEEeCC
Q 018248          301 AQFRLPENVQYLVGFGR-QNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       301 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~  338 (359)
                        ...|.+.|++++|+| |+++|++++.||+|++|+++.
T Consensus       307 --~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          307 --DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             --ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             --ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence              113567899999998 789999999999999999976

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1e-42  Score=295.93  Aligned_cols=307  Identities=27%  Similarity=0.424  Sum_probs=247.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ..|...|.+++|+|||++|++|++..++||++++++......+     ..+..+++.++++.++++++   .|++|++||
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~d~~v~iWd   87 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM-----RHLSKVRMLHRTNYVAFVTG---VKEVVHIWD   87 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC-----SCCCEEEECTTSSEEEEECS---STTEEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec-----CCeEEEEEcCCCCEEEEEEC---CccEEEEEE
Confidence            4689999999999999999999966789999997665544332     35788899999998887776   468999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEec-CCCCee
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACP-GLLKGQ  160 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~d~~  160 (359)
                      ..+++.+..+.+...|.++.++++...++.++.|++||+.++ +.+..+..   +...+++++  .  +++++ |..+|.
T Consensus        88 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~--~la~~sg~~~g~  160 (355)
T 3vu4_A           88 DVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--G--LLVYSNEFNLGQ  160 (355)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--T--EEEEEESSCTTC
T ss_pred             CCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--c--EEEEeCCCcCcE
Confidence            999999999998889999999999877779999999999887 77777665   445677777  2  35544 788999


Q ss_pred             EEEEecCCee-----------------eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          161 VRVEDYGTKK-----------------SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       161 v~~~~~~~~~-----------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                      |++|+.....                 +..+.+|...|.+++|+|+|++|++|+.|++.|++||+++++.+..+..+.|.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            9999987643                 77889999999999999999999999999933999999999999999844467


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEE
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF  303 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (359)
                      ..|.+++|+|++++|++++.|++|+|||++......                    ...+..  .+++.++...|++..+
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~--------------------~~~~~~--~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK--------------------RHALKG--WINMKYFQSEWSLCNF  298 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC--------------------SEETTT--TEECCCCCCSSCSEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc--------------------cccccc--eeeccccccccceeEE
Confidence            899999999999999999999999999998764221                    000000  0345566677777777


Q ss_pred             eecCCc---EEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEE
Q 018248          304 RLPENV---QYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQ  346 (359)
Q Consensus       304 ~~~~~~---v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~  346 (359)
                      .++...   ...++|++|++.|++++.||.+++|++.....++...
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~~~  344 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWL  344 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTEEE
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCceEE
Confidence            766533   4779999999999999999999999998765554443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.4e-42  Score=290.98  Aligned_cols=294  Identities=12%  Similarity=0.164  Sum_probs=232.2

Q ss_pred             CCCCceEEEEE-----cc-CCCEEEEec-CCceEEEEcCCCcc-----eeeeecccCCCCceeEEEEeccCCEEEEEecC
Q 018248            4 PDPITIHHLAL-----NQ-DHGCFATGT-ETGFRVYLSDPYKP-----IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG   71 (359)
Q Consensus         4 ~h~~~v~~~~~-----s~-~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~   71 (359)
                      .|.+.|++++|     ++ ++++|++|+ |+.|++|++...+.     .....+. +|...|..+++++++..++.++  
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~s--   95 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSS--   95 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEEEE--
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEEEc--
Confidence            58999999999     77 999999999 99999999975431     2234454 8999999999999998888777  


Q ss_pred             CCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe---ccCCCceeeeeec
Q 018248           72 PHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE---TVVNPTGLCDVSQ  144 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~  144 (359)
                        .|++|++||+.+++.+..+. |...|.+++|+|++..++   .|+.|++||+.... .....   .|...+.+++++|
T Consensus        96 --~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           96 --WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             --TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECC
T ss_pred             --CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeecc
Confidence              79999999999999999887 999999999999998777   79999999996433 22222   5667788999998


Q ss_pred             CCCc--------cEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC-CcEEE
Q 018248          145 NAGP--------MVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD-GSLLQ  215 (359)
Q Consensus       145 ~~~~--------~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~-~~~~~  215 (359)
                      ++..        .++++ ++.|+.|++|+.+......+.+|...|.+++|+|+|++|++|+.|+. |++||+.+ .....
T Consensus       173 ~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~~~~~~  250 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNLTYPQR  250 (343)
T ss_dssp             CCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCCSSCSE
T ss_pred             ccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCCcccce
Confidence            7632        34665 66899999999888888889999999999999999999999999999 99999944 44444


Q ss_pred             EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248          216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS  295 (359)
Q Consensus       216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (359)
                      .+.   +...|.+++|+|++++++++ .|+.|++|++.+++....                    ..+   .   .   .
T Consensus       251 ~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~--------------------~~~---~---~---~  297 (343)
T 2xzm_R          251 EFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPV--------------------CTI---E---A---E  297 (343)
T ss_dssp             EEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSE--------------------EEC---C---C---C
T ss_pred             eec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCce--------------------EEe---e---c---C
Confidence            443   33579999999999988755 577799999988653210                    000   0   0   0


Q ss_pred             cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ..........+...+.+++|+|++++|++|+.||.|++|+++.
T Consensus       298 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          298 PITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             SGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             cchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            0000001123456789999999999999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-43  Score=302.75  Aligned_cols=288  Identities=14%  Similarity=0.132  Sum_probs=235.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|.++|++++|+|++++|++|+ |++|+|||+.+++...  .+. +|...+..++++++++.++.++    .|+.+++|
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~-~h~~~v~~~~~s~~g~~las~~----~d~~v~iw  135 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--AIK-LHCPWVMECAFAPNGQSVACGG----LDSACSIF  135 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--EEE-CCCTTCCCCEECTTSSEEEECC----SSSCCEEE
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--EEe-cCCCCEEEEEECCCCCEEEEee----CCCcEEEE
Confidence            36899999999999999999999 9999999998876553  343 7899999999999999887776    78999999


Q ss_pred             ECCCcc-------EEeeec-cCcceeEEEEecce-e-EEE--ecCeEEEEEcccceeeeeE-----eccCCCceeeeeec
Q 018248           82 DDHENR-------YLGELS-FRSEVKNVRLRRDR-I-VVV--LNQKVYVYNFTDLKLVDQI-----ETVVNPTGLCDVSQ  144 (359)
Q Consensus        82 d~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~-~~~--~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~  144 (359)
                      |+.+..       ....+. |...|.++.|.|++ . ++.  .|++|++||+.+++.+..+     ..|...+..+++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            986532       233444 88899999999964 3 333  8999999999999888777     45677778888876


Q ss_pred             CCCccEEEecCCCCeeEEEEecC--CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCC
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYG--TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAE  222 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~  222 (359)
                      .... ++++ |+.|+.|++|+.+  ...+..+.+|...|.+++|+|++++|++|+.|+. |++||+++++.+..+..+..
T Consensus       216 ~~~~-~l~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~~~  292 (380)
T 3iz6_a          216 LNAN-MFIS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYNREPD  292 (380)
T ss_dssp             SSCC-EEEE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEECCCCS
T ss_pred             CCCC-EEEE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEeccccc
Confidence            4333 3554 6789999999975  3677888999999999999999999999999999 99999999999888765321


Q ss_pred             -----CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecc
Q 018248          223 -----RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK  297 (359)
Q Consensus       223 -----~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (359)
                           ...|++++|+|+|++|++|+.||.|++||+..++..                                 ..+...
T Consensus       293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~---------------------------------~~~~~~  339 (380)
T 3iz6_a          293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV---------------------------------LNLGTL  339 (380)
T ss_dssp             SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE---------------------------------EEECCS
T ss_pred             ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE---------------------------------EEEecc
Confidence                 234899999999999999999999999999876511                                 000000


Q ss_pred             cceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                           ...|.+.|.+++|+||+++|++|+.||.|++|++..
T Consensus       340 -----~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          340 -----QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             -----CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             -----cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence                 123567899999999999999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.3e-42  Score=312.53  Aligned_cols=246  Identities=15%  Similarity=0.181  Sum_probs=207.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|++++|+|||++||+|+ |+.|+|||+.+++......+. +|.+.|..++|++++..++.++.+...++.|++||
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd  135 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD  135 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred             CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence            6899999999999999999999 999999999766555555555 89999999999999999888774321225788887


Q ss_pred             CCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                        +++....+. |...|.+++|+|++. .++   .|++|++||..+++....+.+|...+..++|+|+++.  +++ ++.
T Consensus       136 --~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~--las-~s~  210 (611)
T 1nr0_A          136 --TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL--FAS-TGG  210 (611)
T ss_dssp             --TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE--EEE-EET
T ss_pred             --CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE--EEE-EEC
Confidence              566666777 999999999999985 344   8999999999999999999999999999999998864  665 668


Q ss_pred             CeeEEEEecC-CeeeEEee-------cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec----------
Q 018248          158 KGQVRVEDYG-TKKSKYIT-------AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR----------  219 (359)
Q Consensus       158 d~~v~~~~~~-~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~----------  219 (359)
                      |+.|++|+.. ++....+.       +|...|.+++|+|++++|++++.|+. |++||+.+++.+..+..          
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCccceeEE
Confidence            9999999864 45556663       79999999999999999999999999 99999998876655431          


Q ss_pred             -------------------------------CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          220 -------------------------------GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       220 -------------------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                                                     ..|...|++++|+|+|++|++++.|++|++||+.++.
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                                           1267789999999999999999999999999998765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-41  Score=283.29  Aligned_cols=282  Identities=12%  Similarity=0.220  Sum_probs=238.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|.+++|+|++++|++|+ |+.|++|++.+++..  ..+. +|...+..++|+++++.++.++    .|+.|++|
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~----~d~~i~vw   92 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS-GHKLGISDVAWSSDSNLLVSAS----DDKTLKIW   92 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--hhhc-cCCCceEEEEEcCCCCEEEEEC----CCCEEEEE
Confidence            36899999999999999999999 999999999876554  3444 7999999999999999888887    78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      |+.+++.+..+. |...|.++.|+|++.+++   .|+.|++||+++++.+..+..|..++..++|+|++..  +++ ++.
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~-~~~  169 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--IVS-SSY  169 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEE-EET
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCE--EEE-EeC
Confidence            999999999888 899999999999998887   7999999999999999999989999999999998764  555 567


Q ss_pred             CeeEEEEecCC-eeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe-cCC
Q 018248          158 KGQVRVEDYGT-KKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF-SSN  234 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-s~~  234 (359)
                      |+.|++|+... +.+..+ ..+...+..++|+|++++|++++.|+. |++||+++++.+..+..+..........+ .++
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG  248 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence            99999998865 444444 456678999999999999999999999 99999999999988876433222223334 467


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      +++|++++.||.|++||+.+++..                                          ..++.|.+.|..++
T Consensus       249 ~~~l~sg~~dg~i~vwd~~~~~~~------------------------------------------~~~~~h~~~v~~~~  286 (312)
T 4ery_A          249 GKWIVSGSEDNLVYIWNLQTKEIV------------------------------------------QKLQGHTDVVISTA  286 (312)
T ss_dssp             SCEEEECCTTSCEEEEETTTCCEE------------------------------------------EEECCCSSCEEEEE
T ss_pred             CcEEEEECCCCEEEEEECCCchhh------------------------------------------hhhhccCCcEEEEe
Confidence            899999999999999999886511                                          12445667899999


Q ss_pred             ecccCCEEEEEe--cCCeEEEEEeC
Q 018248          315 FGRQNNTIVIVG--LDGSYYKCEFD  337 (359)
Q Consensus       315 ~s~~~~~l~~~~--~dg~i~v~~~~  337 (359)
                      |+|+++.|++++  .||.|++|+.+
T Consensus       287 ~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          287 CHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ecCcCCceEEEEccCCccEEEecCC
Confidence            999999999987  59999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-41  Score=291.57  Aligned_cols=282  Identities=16%  Similarity=0.160  Sum_probs=229.4

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeeccc---------------CCCCceeEEEEeccCCEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDR---------------NPRGGTQLVSMLFRSNIICLV   68 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~---------------~h~~~v~~~~~~~~~~~~~~~   68 (359)
                      .|...|.+++|+|||++||+|+++.+++|++.+++.........               .+...|..++|+++++.++.+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            38899999999999999999999999999998876543222100               112248889999999988887


Q ss_pred             ecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeec
Q 018248           69 NSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQ  144 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (359)
                      +    .|+.|++||+.+++.+..+. |...|.+++|+|++..++   .|++|++||+++++....+.. ...+..++++|
T Consensus       142 ~----~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~  216 (393)
T 1erj_A          142 A----EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSP  216 (393)
T ss_dssp             E----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECS
T ss_pred             c----CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-CCCcEEEEEEC
Confidence            7    78999999999999998888 999999999999998877   899999999999988777764 45678889988


Q ss_pred             -CCCccEEEecCCCCeeEEEEecCC-eeeEEe-------ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----
Q 018248          145 -NAGPMVMACPGLLKGQVRVEDYGT-KKSKYI-------TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----  211 (359)
Q Consensus       145 -~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----  211 (359)
                       ++.  ++++ |+.|+.|++|+... ..+..+       .+|...|.+++|+|++++|++++.|+. |++||+++.    
T Consensus       217 ~~~~--~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~~  292 (393)
T 1erj_A          217 GDGK--YIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKS  292 (393)
T ss_dssp             TTCC--EEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-------
T ss_pred             CCCC--EEEE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCcc
Confidence             444  3555 66899999998765 334444       578999999999999999999999999 999998763    


Q ss_pred             --------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeee
Q 018248          212 --------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSF  283 (359)
Q Consensus       212 --------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (359)
                              .+...+.+  |...|.+++|+|++++|++++.|+.|++||+.+++..                         
T Consensus       293 ~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-------------------------  345 (393)
T 1erj_A          293 DSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-------------------------  345 (393)
T ss_dssp             --------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-------------------------
T ss_pred             cccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-------------------------
Confidence                    33445555  7789999999999999999999999999999887611                         


Q ss_pred             eEeeeecceEEecccceeEEeecCCcEEEeeecc------cCCEEEEEecCCeEEEEEeCC
Q 018248          284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR------QNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                       ..++.|.+.|.+++|++      +++.|++|+.||.|++|++..
T Consensus       346 -----------------~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          346 -----------------LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             -----------------EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             -----------------EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence                             12445667888888875      688999999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-41  Score=285.13  Aligned_cols=284  Identities=14%  Similarity=0.152  Sum_probs=221.1

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccC-CCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRN-PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|..+|.+++|+|+  +|++|+ |+.|++|++..+.......+..+ |...|..++|+++++.++.++    .|++|++|
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s----~D~~v~iw   85 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS----FDSTVSIW   85 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE----TTSCEEEE
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe----CCCcEEEE
Confidence            58999999999998  899999 99999999987544333444224 999999999999999888877    78999999


Q ss_pred             ECCC-------ccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc----ceeeeeEeccCCCceeeeeecCC
Q 018248           82 DDHE-------NRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD----LKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        82 d~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      |+..       .+.+..+. |...|.+++|+|++.+++   .|+.|++||+..    .+.+..+..|...+..++|+|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~  165 (330)
T 2hes_X           86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE  165 (330)
T ss_dssp             EC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred             EcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence            9853       34566666 899999999999999888   799999999942    25667788899999999999987


Q ss_pred             CccEEEecCCCCeeEEEEecCC---eeeEEeecccccccEEEEccC--CcEEEEEeCCCCeEEEEEcCCC--------cE
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT---KKSKYITAHASRIASIAMTLD--GRFVATASSKGTLIRVFNTMDG--------SL  213 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~---~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~~i~iwd~~~~--------~~  213 (359)
                      ..  +++ ++.|+.|++|+...   ..+..+.+|...|.+++|+|+  +.+|++++.|+. |++||++++        ..
T Consensus       166 ~~--l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          166 AL--LAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             SE--EEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSCEEEEE
T ss_pred             CE--EEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccccceeEE
Confidence            64  665 66899999997643   467788999999999999998  779999999999 999998754        33


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY  293 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (359)
                      ...+.. .|...|.+++|++++ +|++++.||.|+||+..+++..                          ..    ...
T Consensus       242 ~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~--------------------------~~----~~~  289 (330)
T 2hes_X          242 EAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK--------------------------VF----AKR  289 (330)
T ss_dssp             EEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE--------------------------EE----EEE
T ss_pred             eeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE--------------------------EE----ecc
Confidence            344432 267899999999765 8899999999999998765300                          00    000


Q ss_pred             EecccceeEEeecCC-cEEEeeecc--cCCEEEEEecCCeEEEEEeCC
Q 018248          294 FSSKWSMAQFRLPEN-VQYLVGFGR--QNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~~~~~dg~i~v~~~~~  338 (359)
                               ...+.. .|.+++|+|  ++++|++|+.||.|++|++..
T Consensus       290 ---------~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          290 ---------ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ---------SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ---------ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence                     112334 789999999  789999999999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.8e-41  Score=305.11  Aligned_cols=272  Identities=18%  Similarity=0.265  Sum_probs=238.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|++++|++++ |+.|++|+.+....   ..+. +|...+..+++++++..++..+    .|+.|++||
T Consensus       301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~---~~~~-~~~~~v~~~~~s~~g~~l~~~~----~dg~v~~~~  372 (577)
T 2ymu_A          301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---QTLT-GHSSSVWGVAFSPDGQTIASAS----DDKTVKLWN  372 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee---EEEe-CCCCCEEEEEECCCCCEEEEEe----CCCEEEEEc
Confidence            5889999999999999999999 99999999875322   2333 7899999999999999888877    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                       .+++.+..+. |...|.+++|+|++++++   .|+.|++||. +++.+..+..|...+..++|+|+++.  +++ ++.|
T Consensus       373 -~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~-~~~d  447 (577)
T 2ymu_A          373 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQT--IAS-ASDD  447 (577)
T ss_dssp             -TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSE--EEE-EETT
T ss_pred             -CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCE--EEE-EcCC
Confidence             5677777777 899999999999998887   7899999995 67788888999999999999998875  555 5579


Q ss_pred             eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248          159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  238 (359)
                      +.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++|| .+++.+..+..  |...|++++|+||+++|
T Consensus       448 ~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~-~~~~~~~~~~~--h~~~v~~l~~s~dg~~l  523 (577)
T 2ymu_A          448 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLTG--HSSSVRGVAFSPDGQTI  523 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEE-TTSCEEEEEEC--CSSCEEEEEECTTSSCE
T ss_pred             CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEc-CCCCEEEEEeC--CCCCEEEEEEcCCCCEE
Confidence            9999999999999999999999999999999999999999999 99999 47888888887  77899999999999999


Q ss_pred             EEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeeccc
Q 018248          239 AASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQ  318 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  318 (359)
                      ++++.||.|+|||.. ++.                                          ...+..|.+.|..++|+||
T Consensus       524 ~s~~~dg~v~lwd~~-~~~------------------------------------------~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          524 ASASDDKTVKLWNRN-GQL------------------------------------------LQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             EEEETTSEEEEECTT-SCE------------------------------------------EEEEECCSSCEEEEEECTT
T ss_pred             EEEECcCEEEEEeCC-CCE------------------------------------------EEEEcCCCCCEEEEEEcCC
Confidence            999999999999963 220                                          1124557789999999999


Q ss_pred             CCEEEEEecCCeEEEEE
Q 018248          319 NNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       319 ~~~l~~~~~dg~i~v~~  335 (359)
                      +++|++++.||.|++|+
T Consensus       561 g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          561 GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEeCCCEEEEeC
Confidence            99999999999999995

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.4e-40  Score=281.43  Aligned_cols=291  Identities=12%  Similarity=0.123  Sum_probs=237.6

Q ss_pred             CCCCceEEEEEccC-CCEEEEec-CCceEEEEcCCCcc---eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDPYKP---IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .|.+.|++|+|+|+ +++|++|+ |++|+|||+...+.   .....+. +|...|..++|+++++.++.++    .|+.|
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~----~d~~i  110 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGS----WDGTL  110 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEE----TTSEE
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEc----ccccc
Confidence            59999999999997 68999999 99999999986543   2334455 8999999999999999988887    78999


Q ss_pred             EEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccccee-eeeEeccCCCceeeeeecCCCccEEEe
Q 018248           79 MIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL-VDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      ++|+........... +...+....+++++..++   .|+.+++||+..... ......+...+..+++++++...++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            999999888777776 778888999999988777   799999999865544 333456778888999999888777776


Q ss_pred             cCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          154 PGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                       ++.|+.|++|+... +....+.+|...|++++|+|++++|++|+.|+. |++||+++.+.+..+..   ...|.++.|+
T Consensus       191 -~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~---~~~v~~~~~~  265 (340)
T 4aow_A          191 -CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDG---GDIINALCFS  265 (340)
T ss_dssp             -EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEC
T ss_pred             -EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecC---CceEEeeecC
Confidence             66799999988765 667778899999999999999999999999999 99999999999988874   3589999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL  312 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (359)
                      |++.+++ ++.|+.|++||++++...                                 ..+...........+...|.+
T Consensus       266 ~~~~~~~-~~~d~~i~iwd~~~~~~~---------------------------------~~~~~~~~~~~~~~h~~~v~~  311 (340)
T 4aow_A          266 PNRYWLC-AATGPSIKIWDLEGKIIV---------------------------------DELKQEVISTSSKAEPPQCTS  311 (340)
T ss_dssp             SSSSEEE-EEETTEEEEEETTTTEEE---------------------------------EEECCC-------CCCCCEEE
T ss_pred             CCCceee-ccCCCEEEEEECCCCeEE---------------------------------EeccccceeeeccCCCCCEEE
Confidence            9887665 567899999999876411                                 011111111123445678999


Q ss_pred             eeecccCCEEEEEecCCeEEEEEeCC
Q 018248          313 VGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       313 ~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ++|+||+++|++|+.||.|++|++..
T Consensus       312 l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          312 LAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            99999999999999999999999976

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-40  Score=302.99  Aligned_cols=320  Identities=11%  Similarity=0.112  Sum_probs=243.0

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .+.+.+.+++|+|||++|++++++.|++|++.+++..  ..+. +|...|.+++++|++++++.++    .|++|++||+
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~--~~~~-~h~~~v~~~~~spdg~~lasg~----~d~~v~lWd~   88 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT--EIYT-EHSHQTTVAKTSPSGYYCASGD----VHGNVRIWDT   88 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC--EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEES
T ss_pred             cccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccC--eEec-CCCCceEEEEECCCCcEEEEEe----CCCCEEEeEC
Confidence            4577889999999999999999889999999866554  4444 8999999999999999998888    7899999998


Q ss_pred             CCcc--EEeeec-cCcceeEEEEecceeEEE--ec-----CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           84 HENR--YLGELS-FRSEVKNVRLRRDRIVVV--LN-----QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        84 ~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~--~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .+++  ....+. |...|.+++|+|+++.++  .+     +.|++||  .++....+.+|...+..++|+|++.. .+++
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~-~l~s  165 (611)
T 1nr0_A           89 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF-RIIS  165 (611)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC-EEEE
T ss_pred             CCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCe-EEEE
Confidence            7554  344555 889999999999999887  22     3688887  56667788899999999999998764 2454


Q ss_pred             cCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC-----CCCcceE
Q 018248          154 PGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG-----AERAEIY  227 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~-----~~~~~i~  227 (359)
                       |+.|+.|++|+... +....+.+|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+...     .|...|.
T Consensus       166 -~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          166 -GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             -EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             -EeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECCCCcEeeeeccccccccccCCCEE
Confidence             66899999998654 567788999999999999999999999999999 999999999998888421     3788999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCc--cCCCCCceeeeeEeeeecceEEecc--cceeEE
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNL--SSKNSSAISSFRFIRGVLPKYFSSK--WSMAQF  303 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  303 (359)
                      +++|+|++++|++++.|++|++||+.+++................  ...+...   +.....-..+.++..  .....+
T Consensus       244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~s~s~d~~i~~~~~~~~~~~~~~  320 (611)
T 1nr0_A          244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL---VSISANGFINFVNPELGSIDQVR  320 (611)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE---EEEETTCCEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE---EEEeCCCcEEEEeCCCCCcceEE
Confidence            999999999999999999999999987653211000000000000  0000000   000000000122211  112234


Q ss_pred             eecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       304 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      ..|.+.|.+++|+||+++|++++.||.|++|++..
T Consensus       321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence            56778999999999999999999999999999865

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=278.72  Aligned_cols=279  Identities=11%  Similarity=0.134  Sum_probs=239.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|++++|+|++++|++|+ |+.|++||+.+++..  ..+. +|...+..++|+++++.++.++    .|+.|++||
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~----~dg~i~iwd  102 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--GTLD-GHTGTIWSIDVDCFTKYCVTGS----ADYSIKLWD  102 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEE----TTTEEEEEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--hhhh-hcCCcEEEEEEcCCCCEEEEEe----CCCeEEEEE
Confidence            5899999999999999999999 999999999887655  4444 7999999999999999888877    789999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE---ec-----CeEEEEEcccce-----------eeeeEeccCC--Cceeee
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV---LN-----QKVYVYNFTDLK-----------LVDQIETVVN--PTGLCD  141 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d-----~~i~i~d~~~~~-----------~~~~~~~~~~--~~~~~~  141 (359)
                      +.+++.+..+.+...+.+++|+|++.+++   .+     +.|++||+....           ....+..+..  .+..++
T Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            99999999999999999999999998887   55     899999996653           2333444444  778888


Q ss_pred             eecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          142 VSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      |+|+++.  +++ ++.||.|++|+...  .....+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+. 
T Consensus       183 ~~~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~-  257 (369)
T 3zwl_B          183 WSTKGKY--IIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKYE-  257 (369)
T ss_dssp             ECGGGCE--EEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE-
T ss_pred             EcCCCCE--EEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeeec-
Confidence            9988765  554 55799999999875  677888899999999999999999999999999 9999999999998887 


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCC--------------cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeE
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKG--------------TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRF  285 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (359)
                        +...+.+++|+|+++++++++.++              .+++||+.+++.                            
T Consensus       258 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------------------------  307 (369)
T 3zwl_B          258 --TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE----------------------------  307 (369)
T ss_dssp             --CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE----------------------------
T ss_pred             --CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc----------------------------
Confidence              457899999999999999999888              788888776651                            


Q ss_pred             eeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          286 IRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                    ...+..+.+.|.+++|+|++++|++++.||.|++|+++.
T Consensus       308 --------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          308 --------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             --------------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             --------------hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence                          112445678899999999999999999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-39  Score=274.70  Aligned_cols=278  Identities=14%  Similarity=0.169  Sum_probs=234.2

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCccee---eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIM---RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|...|.+++|+|++++|++++|+.|++|++++.+...   .... .+|...+..++++++++.+++++    .|+.|++
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~~  123 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGG----EASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEE----SSSEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccc-cCCCCcEEEEEEcCCCCEEEEEc----CCCcEEE
Confidence            58899999999999999999999999999998654321   1111 15889999999999999888877    6899999


Q ss_pred             EECCCcc--EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           81 WDDHENR--YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ||+.+++  ....+. |...|.+++|+|++..++   .|+.|++||+++++.+..+..|...+..++++|+++.  +++ 
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~-  200 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK--LWT-  200 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEE-
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCE--EEE-
Confidence            9999887  445555 788999999999998777   7899999999999999999889999999999998765  554 


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      ++.|+.|++|+...........+...+.+++|+|++++|++++.++. |++||+++++.. .+..  |...|.+++|+|+
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~~--~~~~v~~~~~~~~  276 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLHL--HESCVLSLKFAYC  276 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EECC--CSSCEEEEEECTT
T ss_pred             EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEcC--CccceeEEEECCC
Confidence            55799999999876554444567889999999999999999999999 999999988765 4443  7789999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      +++|++++.||.|++||+.+++..                                   .        ...+...+..++
T Consensus       277 ~~~l~~~~~dg~i~~~~~~~~~~~-----------------------------------~--------~~~~~~~v~~~~  313 (337)
T 1gxr_A          277 GKWFVSTGKDNLLNAWRTPYGASI-----------------------------------F--------QSKESSSVLSCD  313 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEE-----------------------------------E--------EEECSSCEEEEE
T ss_pred             CCEEEEecCCCcEEEEECCCCeEE-----------------------------------E--------EecCCCcEEEEE
Confidence            999999999999999999987611                                   0        112356789999


Q ss_pred             ecccCCEEEEEecCCeEEEEEe
Q 018248          315 FGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      |+|++++|++++.||.|++|++
T Consensus       314 ~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          314 ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEecCCCeEEEEEE
Confidence            9999999999999999999987

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.3e-39  Score=291.05  Aligned_cols=275  Identities=17%  Similarity=0.231  Sum_probs=237.3

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|.+++|+|+++.|++++ |+.|++|+.+. +.  ...+. +|...+..+++++++..++.++    .|+.|++|
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~--~~~~~-~h~~~v~~~~~~~~~~~l~t~~----~d~~i~~w  330 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QL--LQTLT-GHSSSVWGVAFSPDGQTIASAS----DDKTVKLW  330 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE--EEEEC-CCSSCEEEEEECTTSSEEEEEE----TTSCEEEE
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cE--EEEEe-cCCCCeEEEEECCCCCEEEEEe----CCCeEEEE
Confidence            35889999999999999999999 99999999763 22  23444 8999999999999999888877    78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      |.... .+..+. |...+.+++|+|++..++   .|+.|++||. +++.+..+..|...+..++|+|+++.  +++ ++.
T Consensus       331 ~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~--l~~-~~~  405 (577)
T 2ymu_A          331 NRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT--IAS-ASD  405 (577)
T ss_dssp             ETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSC--EEE-EET
T ss_pred             eCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCE--EEE-EeC
Confidence            96654 445555 889999999999998887   7899999995 67888888999999999999999876  555 557


Q ss_pred             CeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          158 KGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       158 d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      |+.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+..  |...|.+++|+|++++
T Consensus       406 d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          406 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             TSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTTSCE
T ss_pred             CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEcCCCCE
Confidence            99999999999999999999999999999999999999999999 999995 6777888876  7789999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248          238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR  317 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  317 (359)
                      |++++.|+.|++||... +.                                          ...+..|.+.|++++|+|
T Consensus       482 las~~~d~~i~iw~~~~-~~------------------------------------------~~~~~~h~~~v~~l~~s~  518 (577)
T 2ymu_A          482 IASASDDKTVKLWNRNG-QL------------------------------------------LQTLTGHSSSVRGVAFSP  518 (577)
T ss_dssp             EEEEETTSEEEEEETTS-CE------------------------------------------EEEEECCSSCEEEEEECT
T ss_pred             EEEEeCCCEEEEEcCCC-CE------------------------------------------EEEEeCCCCCEEEEEEcC
Confidence            99999999999999532 20                                          112445677899999999


Q ss_pred             cCCEEEEEecCCeEEEEEeC
Q 018248          318 QNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       318 ~~~~l~~~~~dg~i~v~~~~  337 (359)
                      |+++|++++.||.|++|+.+
T Consensus       519 dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          519 DGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTT
T ss_pred             CCCEEEEEECcCEEEEEeCC
Confidence            99999999999999999853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-39  Score=279.45  Aligned_cols=310  Identities=14%  Similarity=0.113  Sum_probs=236.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..+|.+++|+|++++|++|+ |+.|++|++++++......+. +|...+..++++++++.++.++    .|+.|++||
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd   80 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG----TDRNAYVWT   80 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE----TTSCEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEc----CCCeEEEEE
Confidence            4889999999999999999998 999999999987533445555 7999999999999999888877    789999999


Q ss_pred             CCCccEEeee---ccCcceeEEEEecceeEEE---ecCeEEEEEccccee---eeeE-eccCCCceeeeeecCCCccEEE
Q 018248           83 DHENRYLGEL---SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL---VDQI-ETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        83 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      +.+++....+   .|...|.+++|+|++.+++   .|+.|++||+..++.   ...+ ..|...+..++|+|+++.  ++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~  158 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL--LA  158 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE--EE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE--EE
Confidence            9888755443   3888999999999998877   789999999977652   2333 456778899999998764  55


Q ss_pred             ecCCCCeeEEEEec-------------------CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248          153 CPGLLKGQVRVEDY-------------------GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL  213 (359)
Q Consensus       153 ~~g~~d~~v~~~~~-------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~  213 (359)
                      + ++.|+.|++|+.                   .+..+..+..|...|.+++|+|++++|++++.|+. |++||+++++.
T Consensus       159 ~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~  236 (372)
T 1k8k_C          159 A-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMA  236 (372)
T ss_dssp             E-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTE
T ss_pred             E-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCCce
Confidence            5 557999999985                   34677788899999999999999999999999999 99999999999


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC--CCC--CCCCCccccCCCCCccCCCCCceeeeeEeeee
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV--DSG--SPGTSKLHSASEPNLSSKNSSAISSFRFIRGV  289 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (359)
                      +..+..  |...|.+++|+|++++|+++ .|+.|++|++..  +.-  ..........      . .. ....   ++.+
T Consensus       237 ~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~------~-~~-~~~~---~~~~  302 (372)
T 1k8k_C          237 VATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS------S-QR-GLTA---RERF  302 (372)
T ss_dssp             EEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC----------------CH---HHHH
T ss_pred             eEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc------h-hh-hcch---hhhh
Confidence            999986  67799999999999998887 899999999988  320  0000000000      0 00 0000   0000


Q ss_pred             cceEEecc-cce------eEE-eecCCcEEEeeec-ccC---CEEEEEecCCeEEEEEeCC
Q 018248          290 LPKYFSSK-WSM------AQF-RLPENVQYLVGFG-RQN---NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       290 ~~~~~~~~-~~~------~~~-~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~v~~~~~  338 (359)
                        +..+.. ...      ..+ ..|.+.|.+++|. ++|   ++|++++.||.|++|+++.
T Consensus       303 --~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          303 --QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             --HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             --hhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence              000000 000      112 2567899999966 666   9999999999999999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-39  Score=299.71  Aligned_cols=300  Identities=13%  Similarity=0.139  Sum_probs=232.6

Q ss_pred             CCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcc---eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKP---IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      .|.+.|++++|+|++ ++|++|+ |+.|++|++.....   .....+. +|...|..++++++++.++.++    .|+.|
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs----~Dg~v  454 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGS----WDGEL  454 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEE----TTSEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEe----CCCcE
Confidence            699999999999875 7899999 99999999976432   2234444 8999999999999999888877    78999


Q ss_pred             EEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE---eccCCCceeeeeecCCCccEE
Q 018248           79 MIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI---ETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      ++||+.+++.+..+. |...|.+++|+|++..++   .|++|++||+.........   ..|...+.+++|+|++....+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            999999999998887 999999999999998777   8999999998654333222   346777899999998765556


Q ss_pred             EecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          152 ACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                      ++ ++.|+.|++|+... +....+.+|...|++++|+|++++|++++.|+. |++||+++++.+..+..   ...|.+++
T Consensus       535 ~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~~---~~~v~~~~  609 (694)
T 3dm0_A          535 VS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLEA---NSVIHALC  609 (694)
T ss_dssp             EE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCBC---SSCEEEEE
T ss_pred             EE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEecC---CCcEEEEE
Confidence            66 66899999998875 556778899999999999999999999999999 99999999998887763   46899999


Q ss_pred             ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248          231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ  310 (359)
Q Consensus       231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (359)
                      |+|++.+|++++ ++.|+|||++++......      ......                ......... ....+.+...+
T Consensus       610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~------~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~  665 (694)
T 3dm0_A          610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDL------KVDLKA----------------EAEKADNSG-PAATKRKVIYC  665 (694)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEE------CCCCC---------------------------------CCCCE
T ss_pred             EcCCCcEEEEEc-CCCEEEEECCCCCChhhh------cccccc----------------ccccccccc-cccCCceeEEe
Confidence            999999888776 556999999986521100      000000                000000000 00000111246


Q ss_pred             EEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          311 YLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       311 ~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ++++|+|||++|++|+.||.|++|++.
T Consensus       666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          666 TSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            789999999999999999999999874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=269.97  Aligned_cols=238  Identities=12%  Similarity=0.203  Sum_probs=214.8

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|.+++|++++.++++++ |+.|++||+.+++...  .+. +|...+..++++++++.++..+    .|+.|++|
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~--~~~-~~~~~~~~~~~spdg~~l~~g~----~dg~v~i~  149 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK--SID-AGPVDAWTLAFSPDSQYLATGT----HVGKVNIF  149 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEE-CCTTCCCCEEECTTSSEEEEEC----TTSEEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE--EEe-CCCccEEEEEECCCCCEEEEEc----CCCcEEEE
Confidence            35889999999999999999999 9999999999876553  333 5778888999999999888777    78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      ++.+++....+. +...|.+++|+|++++++   .|+.|++||+++++.+..+..|..++..++|+|+++.  +++ |+.
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~--l~s-~s~  226 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL--LVT-ASD  226 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE--EEE-ECT
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE--EEE-EcC
Confidence            999999888887 778899999999999888   7999999999999999999999999999999998864  665 678


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      |+.|++|+.+. .....+.+|...|.+++|+|++++|++++.|+. |++||+++++++..+..  |...|.+++|+|+++
T Consensus       227 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNGS  303 (321)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSS
T ss_pred             CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECCCCC
Confidence            99999998764 567788999999999999999999999999999 99999999999999986  778999999999999


Q ss_pred             EEEEEcCCCcEEEEEcc
Q 018248          237 WLAASSDKGTVHVFGLK  253 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~  253 (359)
                      +|++++.||+|+|||+.
T Consensus       304 ~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          304 KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEETTCCEEEEECC
T ss_pred             EEEEEeCCCeEEEEeCC
Confidence            99999999999999964

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6e-39  Score=277.37  Aligned_cols=291  Identities=14%  Similarity=0.200  Sum_probs=233.8

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc----ceeeeecccCCCCceeEEEEecc----C---CEEEEEec
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK----PIMRRDFDRNPRGGTQLVSMLFR----S---NIICLVNS   70 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~----~---~~~~~~~~   70 (359)
                      ..|...|++++|+|  ++|++|+ |+.|++|++++.+    ......+. +|...|..++|+++    +   +.++.++ 
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~-   88 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS-   88 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE-
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc-
Confidence            46999999999999  7899988 9999999999776    12224444 79999999999998    7   7777766 


Q ss_pred             CCCCCCeEEEEECCCccE-----Eeeec-c-----CcceeEEEEe----cceeE-EE---ecCeEEEEEccc------ce
Q 018248           71 GPHQSNKVMIWDDHENRY-----LGELS-F-----RSEVKNVRLR----RDRIV-VV---LNQKVYVYNFTD------LK  125 (359)
Q Consensus        71 ~~~~d~~i~iwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-~~---~d~~i~i~d~~~------~~  125 (359)
                         .|+.|++||+.+++.     +..+. |     ...|.+++|+    |++.. ++   .|+.|++||+.+      ++
T Consensus        89 ---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           89 ---FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             ---TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             ---CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence               689999999998886     77776 6     4899999999    99987 66   789999999988      66


Q ss_pred             eee-----eEe-------ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeec---c---cccccEEEE
Q 018248          126 LVD-----QIE-------TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITA---H---ASRIASIAM  186 (359)
Q Consensus       126 ~~~-----~~~-------~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~---~---~~~i~~~~~  186 (359)
                      .+.     .+.       .+...+..++|+|++   ++++ ++.|+.|++|+.. .+.+..+..   |   ...|.+++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence            666     664       367788899999987   3555 6689999999876 567777888   8   999999999


Q ss_pred             ccCCcEEEEEeCC---CCeEEEEEcCCCcEEEEeecCC-----------CCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          187 TLDGRFVATASSK---GTLIRVFNTMDGSLLQEMRRGA-----------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       187 s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      +|++++|++++.|   +. |++||+++++.+..+....           |...|.+++|+|++++|++++.||.|++||+
T Consensus       242 ~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             CSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            9999999999999   99 9999999999998887521           5679999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe------cc------cceeEEeecCCcEEEeeecccC-
Q 018248          253 KVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS------SK------WSMAQFRLPENVQYLVGFGRQN-  319 (359)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~v~~~~~s~~~-  319 (359)
                      ++++...                                 .+.      ..      ........+...|..++|+|++ 
T Consensus       321 ~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          321 KTKERIT---------------------------------TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             TTTEEEE---------------------------------EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             CCCceeE---------------------------------EEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence            8865210                                 000      00      0000012236789999999998 


Q ss_pred             ---------CEEEEEecCCeEEEEEeCC
Q 018248          320 ---------NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       320 ---------~~l~~~~~dg~i~v~~~~~  338 (359)
                               ++|++++.||.|++|+++.
T Consensus       368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          368 RSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             SBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cccccccccceEEEecCCCcEEEEEcCC
Confidence                     7999999999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.9e-39  Score=276.63  Aligned_cols=281  Identities=11%  Similarity=0.072  Sum_probs=224.5

Q ss_pred             CCCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEec-cCCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF-RSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~   79 (359)
                      ..|...|.+++|+|++ ++|++|+ |+.|++|++.+++........ +|...|..++|++ +++.++.++    .|+.|+
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~----~d~~i~  144 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSS----IRGATT  144 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEE----TTTEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEe----CCCEEE
Confidence            3688999999999999 9999999 999999999987766544433 7999999999998 556676666    789999


Q ss_pred             EEECCCccEEeeec----cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           80 IWDDHENRYLGELS----FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        80 iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      +||+.+ +.+..+.    +...|.+++|+|++.+++   .|+.|++||+ +++.+..+..|...+..++|+|+++. +++
T Consensus       145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~  221 (383)
T 3ei3_B          145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW-LMA  221 (383)
T ss_dssp             EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT-EEE
T ss_pred             EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC-EEE
Confidence            999886 4444443    347899999999998887   7899999999 67788889999999999999999874 244


Q ss_pred             ecCCCCeeEEEEecCC----eeeEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-----C
Q 018248          153 CPGLLKGQVRVEDYGT----KKSKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-----E  222 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-----~  222 (359)
                      + ++.|+.|++|+...    ........|...|.+++|+| ++++|++++.|+. |++||+++++.+..+..+.     |
T Consensus       222 s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          222 T-SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             E-EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             E-EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccccccccc
Confidence            4 56799999999874    33333337999999999999 9999999999999 9999999887766665421     1


Q ss_pred             C----------cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecce
Q 018248          223 R----------AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPK  292 (359)
Q Consensus       223 ~----------~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (359)
                      .          ..+..++|+|++++  +++.|+.|+|||+.+++..                                  
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~----------------------------------  343 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV----------------------------------  343 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE----------------------------------
T ss_pred             ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee----------------------------------
Confidence            1          34455777777776  7789999999999887621                                  


Q ss_pred             EEecccceeEEee--cCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          293 YFSSKWSMAQFRL--PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       293 ~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                              ..+..  +.+.+..++|+|++++|++++ ||.|++|+++.
T Consensus       344 --------~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          344 --------HQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             --------EEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             --------eeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence                    01221  235677789999999999997 99999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.4e-39  Score=266.53  Aligned_cols=244  Identities=12%  Similarity=0.145  Sum_probs=213.3

Q ss_pred             eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEE
Q 018248           43 RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYV  118 (359)
Q Consensus        43 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i  118 (359)
                      +.+. +|.+.|..++|+|++..++.++    .|+.|++||+.+++.+..+. |..+|.+++|+|++++++   .|+.|++
T Consensus         7 ~~~~-~h~~~V~~~~fsp~~~~l~s~~----~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            7 KTFS-NRSDRVKGIDFHPTEPWVLTTL----YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             EEEE-EECSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             Eeec-CCCCceEEEEECCCCCEEEEEc----CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            4555 8999999999999999988888    78999999999999999988 889999999999998887   8999999


Q ss_pred             EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc-CCcEEEE
Q 018248          119 YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL-DGRFVAT  195 (359)
Q Consensus       119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~  195 (359)
                      ||+.+++.+..+..|...+..++|+|+++.  +++ |+.|+.|++|+...  .....+.+|...|.+++|+| ++.+|++
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s-gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSE--EEE-EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCE--EEE-ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence            999999999999999999999999998864  565 66899999999765  44567889999999999999 6789999


Q ss_pred             EeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC--CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCcc
Q 018248          196 ASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS--NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLS  273 (359)
Q Consensus       196 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  273 (359)
                      |+.|+. |++||++++.....+..+ +...+..+.|+|  ++++|++++.|++|++||+++++.                
T Consensus       159 gs~D~~-v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----------------  220 (304)
T 2ynn_A          159 GCLDRT-VKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----------------  220 (304)
T ss_dssp             EETTSE-EEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE----------------
T ss_pred             EeCCCe-EEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc----------------
Confidence            999999 999999888776666543 557899999986  778999999999999999987651                


Q ss_pred             CCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          274 SKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                                ...+..|...|..++|+|+++.|++|+.||.|++|++..
T Consensus       221 --------------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          221 --------------------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             --------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             --------------------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                                      112455678899999999999999999999999998865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=277.85  Aligned_cols=302  Identities=10%  Similarity=0.102  Sum_probs=231.3

Q ss_pred             CCCCceEEEEEccCCCEEE-Eec----CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc---CCEEEEEecCCCCC
Q 018248            4 PDPITIHHLALNQDHGCFA-TGT----ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR---SNIICLVNSGPHQS   75 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~-~~~----d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~~d   75 (359)
                      .|...|.+++|+|++..++ +|+    |+.|++|++++++......+  +|...+.+++|+++   ++.++.++    .|
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~----~d   89 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGD----FG   89 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEE----TT
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee--cccCcEEEEEEcCCCCCCceEEEec----CC
Confidence            4899999999999997664 553    78999999998766544444  58899999999998   47777776    68


Q ss_pred             CeEEEEECCCcc-EEeeec-cCcceeEEEE------ecceeEEE---ecCeEEEEEcccce-eeeeEeccCC----Ccee
Q 018248           76 NKVMIWDDHENR-YLGELS-FRSEVKNVRL------RRDRIVVV---LNQKVYVYNFTDLK-LVDQIETVVN----PTGL  139 (359)
Q Consensus        76 ~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~----~~~~  139 (359)
                      +.|++||+.+++ .+..+. |...|.++.|      +|++..++   .|+.|++||+.+++ .+..+..+..    .+..
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            999999999887 777777 8999999965      57787777   78999999998876 6667665444    5666


Q ss_pred             ee----eecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc---CCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          140 CD----VSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL---DGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       140 ~~----~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                      ++    +++++..  +++ ++.|+.|++|+.+.........|...|.+++|+|   ++.+|++++.||. |++||+++++
T Consensus       170 ~~~~~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~  245 (357)
T 3i2n_A          170 VAFGNAYNQEERV--VCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQH  245 (357)
T ss_dssp             EEEECCCC-CCCE--EEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEE
T ss_pred             EEEEeccCCCCCE--EEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCC
Confidence            66    5566653  555 5579999999998877777788999999999999   9999999999999 9999998765


Q ss_pred             EEEEee---cCCCCcceEEEEecCCCC-EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeee
Q 018248          213 LLQEMR---RGAERAEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRG  288 (359)
Q Consensus       213 ~~~~~~---~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (359)
                      .+..+.   ...|...|++++|+|+++ +|++++.||.|++||++.+......        ...+... .....+     
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~g~~~-~~~~~~-----  311 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK--------DSEGIEM-GVAGSV-----  311 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C--------CTTSCCC-CCCCEE-----
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc--------cCCCCcc-cccccc-----
Confidence            443332   112778999999999998 8999999999999999986633100        0000000 000001     


Q ss_pred             ecceEEecccceeEEeecCCcEEEeeecccCCEEE-EEecCCeEEEEEeCC
Q 018248          289 VLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIV-IVGLDGSYYKCEFDP  338 (359)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~  338 (359)
                               .....+..+.+.|.+++|+|++++|+ +++.||.|++|++..
T Consensus       312 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          312 ---------SLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             ---------EEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             ---------ceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence                     11223455678899999999999998 799999999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.5e-39  Score=273.75  Aligned_cols=282  Identities=12%  Similarity=0.050  Sum_probs=211.7

Q ss_pred             CceEEEEEccCCCEEEEec-CC-------ceEEEEcCCCcce--------eeeecccCCCCceeEEEEeccCCEEEEEec
Q 018248            7 ITIHHLALNQDHGCFATGT-ET-------GFRVYLSDPYKPI--------MRRDFDRNPRGGTQLVSMLFRSNIICLVNS   70 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~-------~i~iw~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~   70 (359)
                      -||++++|+|||++|++|+ +.       .|++|+++.....        ....+. +|...+.++  +++++.++....
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~--~~~~~~~~~g~~   91 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAI--DASKGIILVGCN   91 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEE--EEETTEEEEECC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEE--EeCCCEEEEEEC
Confidence            4799999999999999986 32       4999999765432        112343 566666655  456666655432


Q ss_pred             CCC-------CCCeEEEEECCCccE-E---eeec------cCcceeEEEEecceeEEE-----ecCeEEEEEcccceeee
Q 018248           71 GPH-------QSNKVMIWDDHENRY-L---GELS------FRSEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        71 ~~~-------~d~~i~iwd~~~~~~-~---~~~~------~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~  128 (359)
                      ...       .|+.+++|++.+... +   ....      +...+..++|+|||++++     .|++|++||+++++.+.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence            110       578999999765432 1   1111      334588999999998765     58999999999999988


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCC----Ce
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKG----TL  202 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~~  202 (359)
                      .+. +...+..++|+|+++.  +++ ++.++.+.+|..++....  ....|...|.+++|+|+++++++++.|+    . 
T Consensus       172 ~~~-~~~~V~~v~fspdg~~--l~s-~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~-  246 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDGKV--VAY-ITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV-  246 (365)
T ss_dssp             EEE-CSSCCCEEEECTTSSE--EEE-ECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE-
T ss_pred             EeC-CCCceEEEEEccCCce--EEe-ccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE-
Confidence            886 5677999999999875  555 444555444666665543  3456888999999999999999999887    5 


Q ss_pred             EEEEEcCCCcE----EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248          203 IRVFNTMDGSL----LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS  278 (359)
Q Consensus       203 i~iwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
                      +++|++.....    ...+..  |...|++++|+|||++||+|+.|++|+|||+++++..                    
T Consensus       247 i~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~--------------------  304 (365)
T 4h5i_A          247 LTKISIKSGNTSVLRSKQVTN--RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS--------------------  304 (365)
T ss_dssp             EEEEEEETTEEEEEEEEEEES--SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE--------------------
T ss_pred             EeecccccceecceeeeeecC--CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE--------------------
Confidence            78899877653    233444  6789999999999999999999999999999986521                    


Q ss_pred             ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                   ..+        ++.|.+.|++++|+|||++|++|+.|++|+||+++..
T Consensus       305 -------------~~~--------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          305 -------------KIF--------KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -------------EEE--------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -------------EEe--------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence                         000        2346789999999999999999999999999999754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-39  Score=279.90  Aligned_cols=239  Identities=13%  Similarity=0.236  Sum_probs=214.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|++++|++|+ |+.|++||+.+++..  ..+. +|...|..++++++++.++.++    .|+.|++||
T Consensus       148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~-~h~~~V~~v~~~p~~~~l~s~s----~D~~i~~wd  220 (410)
T 1vyh_C          148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMH-GHDHNVSSVSIMPNGDHIVSAS----RDKTIKMWE  220 (410)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCC-CCSSCEEEEEECSSSSEEEEEE----TTSEEEEEE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEEc-CCCCCEEEEEEeCCCCEEEEEe----CCCeEEEEE
Confidence            5889999999999999999999 999999999876544  4555 8999999999999999888777    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC-----------
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG-----------  147 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  147 (359)
                      +.+++++..+. |...|.++.++|++.+++   .|+.|++||+.+++....+..|...+.+++|+|+..           
T Consensus       221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence            99999999988 889999999999998887   799999999999999999999999999999998642           


Q ss_pred             -------ccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          148 -------PMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       148 -------~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                             ..++++ |+.|+.|++|+.. +..+..+.+|...|.+++|+|++++|++|+.|+. |++||+.+++++..+..
T Consensus       301 ~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~~~~~  378 (410)
T 1vyh_C          301 TKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNA  378 (410)
T ss_dssp             -------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEEEC
T ss_pred             ccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEcC
Confidence                   235665 6789999999875 5778888999999999999999999999999999 99999999999999887


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                        |...|++++|+|++.+|++|+.||+|+||+++
T Consensus       379 --h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          379 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             --CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             --CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence              77899999999999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4e-39  Score=271.86  Aligned_cols=241  Identities=13%  Similarity=0.130  Sum_probs=198.9

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeec-ccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDF-DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +...|.+++|+|++ .|++|+ ||.|+|||+++++......+ ..+|.+.|.+++|+++++.++.++    .|++|++||
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs----~d~~i~iwd  155 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS----KDICIKVWD  155 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE----TTSCEEEEE
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe----CCCeEEEEE
Confidence            45679999999996 455666 99999999998775433222 128999999999999999988887    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      +.+++.+..+. |...|.+++|+|++. +++   .|++|++||+++++....+..  +...+..++++|++.. ++++ |
T Consensus       156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s-g  233 (344)
T 4gqb_B          156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE-VFVF-G  233 (344)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT-EEEE-E
T ss_pred             CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCc-ceEE-e
Confidence            99999999998 999999999999874 444   799999999999888777643  4445678888887665 3444 6


Q ss_pred             CCCeeEEEEecC-CeeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          156 LLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       156 ~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      +.|+.|++|+.+ ++.+..+.+|...|++++|+|++ ++|++|+.|+. |+|||+++++.+ .+.+  |...|++++|+|
T Consensus       234 ~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~-~~~~--H~~~V~~v~~sp  309 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF-RSQA--HRDFVRDATWSP  309 (344)
T ss_dssp             ETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE-EECC--CSSCEEEEEECS
T ss_pred             ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE-EEcC--CCCCEEEEEEeC
Confidence            689999998875 57788899999999999999998 58999999999 999999988765 4444  788999999999


Q ss_pred             CCC-EEEEEcCCCcEEEEEccCCC
Q 018248          234 NAQ-WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       234 ~~~-~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +++ +|++++.|++|++|++.+..
T Consensus       310 ~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          310 LNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCeEEEEEcCCCeEEEEECCCCC
Confidence            986 67799999999999998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=277.63  Aligned_cols=296  Identities=15%  Similarity=0.163  Sum_probs=239.5

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      |...|.+++|+|++++|++|+ |+.|++|+.. ++..  ..+. +|...+..++|+++++.++.++    .|+.|++||+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~----~d~~i~iwd~  178 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALL--NVLN-FHRAPIVSVKWNKDGTHIISMD----VENVTILWNV  178 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEE--EEEC-CCCSCEEEEEECTTSSEEEEEE----TTCCEEEEET
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCee--eecc-CCCccEEEEEECCCCCEEEEEe----cCCeEEEEEC
Confidence            677999999999999999999 9999999943 3333  3444 7899999999999999888877    7899999999


Q ss_pred             CCccEEeeec-cCcc---------------eeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248           84 HENRYLGELS-FRSE---------------VKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        84 ~~~~~~~~~~-~~~~---------------v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                      .+++.+..+. +...               +.++.|+|++.+++  .++.|++||+.+++.+..+..+...+..++|+|+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             TTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred             CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence            9999988887 4444               99999999988777  8999999999999888888889999999999998


Q ss_pred             CCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      ++.  +++ ++.|+.|++|+... +....+..|...|.+++|+|++ ++++++.|+. |++||+++++.+..+..  |..
T Consensus       259 ~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~  331 (425)
T 1r5m_A          259 NKL--LLS-ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--DGV  331 (425)
T ss_dssp             TTE--EEE-EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--TTC
T ss_pred             CCE--EEE-EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--CCc
Confidence            874  555 55799999998765 5677788899999999999999 9999999999 99999999999988886  678


Q ss_pred             ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      .|.+++|+|++++|++++.||.|++||+.+.........             ......+   ..      ........+.
T Consensus       332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-------------~~~~~~~---~~------~~~~~~~~~~  389 (425)
T 1r5m_A          332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY-------------GNRDGIL---NP------LPIPLYASYQ  389 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------------------------------C------EECCEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee-------------ccccccc---Cc------ccchhhhhhc
Confidence            999999999999999999999999999987652210000             0000000   00      0001223355


Q ss_pred             ecCC--cEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          305 LPEN--VQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       305 ~~~~--~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      .+..  .|..++|+|++++|++++.||.|++|+++
T Consensus       390 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          390 SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            5554  89999999999999999999999999885

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-40  Score=286.78  Aligned_cols=310  Identities=11%  Similarity=0.099  Sum_probs=237.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc--ceeeeecccCCCCceeEEEEecc-CCEEEEEecCCCCCCeEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFR-SNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~~d~~i~   79 (359)
                      .|...|.+++|+|++++|++|+ |+.|++|++....  ......+. +|...+..++++++ ++.++.++    .|+.|+
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~----~dg~v~  139 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGG----NNGEIF  139 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEEC----SSSCEE
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEc----CCCeEE
Confidence            5788999999999999999998 9999999998621  22334444 89999999999998 67777666    689999


Q ss_pred             EEECCCcc------EEeee---c-cCcceeEEEEecc-eeEEE---ecCeEEEEEcccceeeeeEecc------CCCcee
Q 018248           80 IWDDHENR------YLGEL---S-FRSEVKNVRLRRD-RIVVV---LNQKVYVYNFTDLKLVDQIETV------VNPTGL  139 (359)
Q Consensus        80 iwd~~~~~------~~~~~---~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~------~~~~~~  139 (359)
                      +||+.+++      ....+   . |...|.+++|+|+ +.+++   .|+.|++||+++++.+..+..+      ...+..
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            99998876      33333   3 8889999999998 55555   8999999999999998888776      678899


Q ss_pred             eeeecCCCccEEEecCCCCe---eEEEEecCC--eeeEEee-cccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          140 CDVSQNAGPMVMACPGLLKG---QVRVEDYGT--KKSKYIT-AHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~---~v~~~~~~~--~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                      ++|+|++... +++ ++.++   .|++|+.+.  .....+. +|...|.+++|+| ++++|++++.|+. |++||+++++
T Consensus       220 ~~~~~~~~~~-l~~-~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~~  296 (416)
T 2pm9_A          220 VEWHPKNSTR-VAT-ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAE  296 (416)
T ss_dssp             EEECSSCTTE-EEE-EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSCC
T ss_pred             EEECCCCCCE-EEE-EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCCc
Confidence            9999987653 333 44677   999999875  4566777 8999999999999 9999999999999 9999999999


Q ss_pred             EEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCcccc------CCCCCccCC--CCCceeee
Q 018248          213 LLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHS------ASEPNLSSK--NSSAISSF  283 (359)
Q Consensus       213 ~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~  283 (359)
                      .+..+..  |...|.+++|+|++ ++|++++.|+.|++|++.+............      ..+.+....  .......+
T Consensus       297 ~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (416)
T 2pm9_A          297 QLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVF  374 (416)
T ss_dssp             EEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSS
T ss_pred             cceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccc
Confidence            9999987  67899999999999 8999999999999999998764432111000      000000000  00000000


Q ss_pred             eEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                     .+.....+...+..++|+|||++|++++.||.|++|++..
T Consensus       375 ---------------~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          375 ---------------HLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ---------------CCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ---------------cccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                           0000111235667899999999999999999999998875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-39  Score=286.35  Aligned_cols=316  Identities=10%  Similarity=-0.005  Sum_probs=222.4

Q ss_pred             CCCceEEEEEccCC---------CEEEE-------------------ec-CCceEEEEcCCCccee--eeecccCCCCce
Q 018248            5 DPITIHHLALNQDH---------GCFAT-------------------GT-ETGFRVYLSDPYKPIM--RRDFDRNPRGGT   53 (359)
Q Consensus         5 h~~~v~~~~~s~~g---------~~l~~-------------------~~-d~~i~iw~~~~~~~~~--~~~~~~~h~~~v   53 (359)
                      +...|.+|+|+|++         ++||+                   ++ |++|+||++++++...  ...+. +|.+.|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE-ECCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcE
Confidence            35677788888775         45555                   55 7789999998765432  12233 567889


Q ss_pred             eEEEEecc------CCEEEEEecCCCCCCeEEEEECCCccE-----------Eeeec-cCcceeEEEEecceeEEE--ec
Q 018248           54 QLVSMLFR------SNIICLVNSGPHQSNKVMIWDDHENRY-----------LGELS-FRSEVKNVRLRRDRIVVV--LN  113 (359)
Q Consensus        54 ~~~~~~~~------~~~~~~~~~~~~~d~~i~iwd~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~~~--~d  113 (359)
                      ..++|+|+      +..++.++    .|++|++||+.+++.           ...+. |...|.+++|++++.++.  .|
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s----~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~D  286 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVS----QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN  286 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEE----TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETT
T ss_pred             EEEEECCCCCCCCCCceEEEEe----cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCC
Confidence            99999986      34666566    689999999977642           12444 788999999998875554  89


Q ss_pred             CeEEEEEcccce-eeeeEeccCCCceee--eeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccc--cccEEEEc
Q 018248          114 QKVYVYNFTDLK-LVDQIETVVNPTGLC--DVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHAS--RIASIAMT  187 (359)
Q Consensus       114 ~~i~i~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~--~i~~~~~s  187 (359)
                      |+|++||+++++ +...+..|...|..+  ++++++. .++++ ++.|++|++|+.+. +....+.+|..  .|.+++|+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~-~~laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs  364 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFED-TVVST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC  364 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSC-CEEEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCC-eEEEE-eccCCeEEEEECCCCCcccccccccccCcccceEeC
Confidence            999999998764 445678899999888  4555542 34565 67899999999765 44455556653  58899999


Q ss_pred             cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCC-----
Q 018248          188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTS-----  262 (359)
Q Consensus       188 ~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----  262 (359)
                      |+++.+++++.|+. |++||++++.++..+.+  |.+.|++++|+|+|++|++|+.||+|++||+..+. .....     
T Consensus       365 p~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~  440 (524)
T 2j04_B          365 PQIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSAT  440 (524)
T ss_dssp             TTTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-TTCC------
T ss_pred             CCcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-ccccccCccc
Confidence            99999999999999 99999999998888876  78899999999999999999999999999986542 11110     


Q ss_pred             ----ccccCCCCCccCCCCCceeeeeEeeeecceEEe-cccceeEEeecCCcEEEeeecccCC---EEEEEecCCeEEEE
Q 018248          263 ----KLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS-SKWSMAQFRLPENVQYLVGFGRQNN---TIVIVGLDGSYYKC  334 (359)
Q Consensus       263 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~v~  334 (359)
                          .+...++++++.       .+.+...+....+. .......+..+.+.|.+++|+|+++   .|++|+.||.|+||
T Consensus       441 ~~~~~v~~v~~sp~g~-------~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          441 QKSLRLWKWDYSIKDD-------KYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             CCCCEEEECBCCSSSC-------EEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred             eeeeEEEEeccCCCCC-------eEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence                123445555442       11111100000011 1112334566778999999999964   99999999999999


Q ss_pred             EeCC
Q 018248          335 EFDP  338 (359)
Q Consensus       335 ~~~~  338 (359)
                      +++-
T Consensus       514 ~l~~  517 (524)
T 2j04_B          514 YLSL  517 (524)
T ss_dssp             ECSC
T ss_pred             Eccc
Confidence            9875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-40  Score=284.68  Aligned_cols=237  Identities=14%  Similarity=0.109  Sum_probs=191.1

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      +..+|++++|+|+|++|++|+ |+.|++|++.++.......+. +|...|..++|+++++.++.++    .|+.|++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s----~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCS----QDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEE----TTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEe----CCCeEEEEEc
Confidence            578999999999999999998 999999999976423445555 8999999999999999888887    7899999999


Q ss_pred             CCcc---EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce---eeeeEec-cCCCceeeeeecCCCccEEE
Q 018248           84 HENR---YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK---LVDQIET-VVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        84 ~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~l~  152 (359)
                      .+++   ....+. |...|.+++|+|++.+++   .|+.|++||+++++   ....+.. |...+..++|+|+++.  ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~  162 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL--LA  162 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE--EE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE--EE
Confidence            9877   444444 899999999999998777   79999999998876   3667776 8889999999998764  55


Q ss_pred             ecCCCCeeEEEEecC-------------------CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248          153 CPGLLKGQVRVEDYG-------------------TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL  213 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~-------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~  213 (359)
                      + ++.|+.|++|+..                   +..+..+ .|...|.+++|+|++++|++++.|+. |++||+++++.
T Consensus       163 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~  239 (377)
T 3dwl_C          163 A-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQ  239 (377)
T ss_dssp             E-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTS
T ss_pred             E-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCC
Confidence            5 5679999999874                   3445555 89999999999999999999999999 99999999887


Q ss_pred             ----EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          214 ----LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       214 ----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                          +..+..  |...|.+++|+|++++|++++.++.+ +|+...
T Consensus       240 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          240 PPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             CEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             cceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence                666665  77899999999999999999877655 777664

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-39  Score=282.11  Aligned_cols=284  Identities=12%  Similarity=0.031  Sum_probs=217.6

Q ss_pred             CCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEec-cCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF-RSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +|...|+||+|+| ++++||+|+ ||.|+|||+++.+......+. +|.+.|.+++|+| +++.++.++    .|++|++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s----~D~~v~i  191 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASS----MEGTTRL  191 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEEC----SSSCEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEe----CCCEEEE
Confidence            4778899999999 567899999 999999999877665555555 8999999999997 466776666    7899999


Q ss_pred             EECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           81 WDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ||++++.......   +...+.+++|+|++.+++   .|+.|++||++ ++.+..+..|...+..++|+|+++.. +++ 
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~-~~s-  268 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWF-LAT-  268 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSE-EEE-
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceE-EEE-
Confidence            9988765443333   345678999999998887   79999999985 56677888899999999999988763 343 


Q ss_pred             CCCCeeEEEEecCCe----eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC----cce
Q 018248          155 GLLKGQVRVEDYGTK----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER----AEI  226 (359)
Q Consensus       155 g~~d~~v~~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~----~~i  226 (359)
                      |+.|+.|++|+....    ......+|...|++++|+|+|++|++++.|+. |++||+.+++....+..+.+.    ..+
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  347 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHLTP  347 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEeccccccccccee
Confidence            667999999987642    22334679999999999999999999999999 999999999887776543211    123


Q ss_pred             EEEEecCCCCEEEEEc------------CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEE
Q 018248          227 YSLAFSSNAQWLAASS------------DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYF  294 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (359)
                      ....|+|++.+++++.            .++.|++||..+++..                                ...+
T Consensus       348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~--------------------------------~~l~  395 (435)
T 4e54_B          348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM--------------------------------CQLY  395 (435)
T ss_dssp             CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE--------------------------------EEEC
T ss_pred             EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE--------------------------------EEEe
Confidence            4556777777766654            3357999999887621                                0111


Q ss_pred             ecccceeEEeecCCcEEEe-eecccCCEEEEEecCCeEEEEEeCC
Q 018248          295 SSKWSMAQFRLPENVQYLV-GFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                               ..+...|.++ +|+|+|++|++|+ |+.|+||++..
T Consensus       396 ---------~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          396 ---------DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE  430 (435)
T ss_dssp             ---------CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred             ---------CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence                     1123445555 7999999998875 88999998875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-38  Score=272.36  Aligned_cols=285  Identities=12%  Similarity=0.162  Sum_probs=228.0

Q ss_pred             CCCCCceEEEEEccC---C-C-EEEEecCCceEEEEcCCCcceeeee-cc-cCCCCceeEEEEeccC----CEEEEEecC
Q 018248            3 QPDPITIHHLALNQD---H-G-CFATGTETGFRVYLSDPYKPIMRRD-FD-RNPRGGTQLVSMLFRS----NIICLVNSG   71 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~---g-~-~l~~~~d~~i~iw~~~~~~~~~~~~-~~-~~h~~~v~~~~~~~~~----~~~~~~~~~   71 (359)
                      ..|..+|.+++|+|+   + . ++++++++.|++|++.+++...... +. ..|...+..++|+++.    ..++.++  
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--   92 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG--   92 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE--
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec--
Confidence            468999999999984   3 3 4444458899999998665432221 11 1367889999999984    4566555  


Q ss_pred             CCCCCeEEEEECCCccEEeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeE---eccCCCceeeeee
Q 018248           72 PHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQI---ETVVNPTGLCDVS  143 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~  143 (359)
                        .|+.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+++++.+..+   ..+...+..++|+
T Consensus        93 --~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           93 --SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             --TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             --CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence              68999999999999999998 999999999999 777776   7899999999999988888   6788899999999


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCCee-e----------------------------EEeecccccccEEEEccCCcEEE
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGTKK-S----------------------------KYITAHASRIASIAMTLDGRFVA  194 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~~~-~----------------------------~~~~~~~~~i~~~~~s~~~~~l~  194 (359)
                      |+++.  +++ ++.|+.|++|+..... .                            .....|...|.+++|+  +++|+
T Consensus       171 ~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  245 (366)
T 3k26_A          171 LLGEK--IMS-CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL  245 (366)
T ss_dssp             TTSSE--EEE-EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred             CCCCE--EEE-ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence            98765  555 5579999999987522 1                            2223489999999998  77999


Q ss_pred             EEeCCCCeEEEEEcCCCcE--------------EEEeecCCCCcceEEEEecCC--CCEEEEEcCCCcEEEEEccCCCCC
Q 018248          195 TASSKGTLIRVFNTMDGSL--------------LQEMRRGAERAEIYSLAFSSN--AQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       195 ~~~~dg~~i~iwd~~~~~~--------------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      +++.|+. |++||+++++.              +..+..  |...|++++|+|+  +++|++++.||.|++||+.+++..
T Consensus       246 ~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          246 SKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             EECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred             EEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence            9999999 99999987744              666665  6778999999999  999999999999999999987622


Q ss_pred             CCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec--CCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          259 PGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP--ENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      .                                      .....+..+  .+.|..++|+|++++|++++.||.|++|++
T Consensus       323 ~--------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          323 K--------------------------------------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             G--------------------------------------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             c--------------------------------------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            0                                      001113333  578999999999999999999999999987


Q ss_pred             C
Q 018248          337 D  337 (359)
Q Consensus       337 ~  337 (359)
                      .
T Consensus       365 ~  365 (366)
T 3k26_A          365 L  365 (366)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-37  Score=256.58  Aligned_cols=274  Identities=12%  Similarity=0.131  Sum_probs=227.7

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|.+++| |++++|++|+ |+.|++||+++.+...  .+. .|...+..++++++++.++.++    .|+.|++|
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~   86 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT--VVY-TGQGFLNSVCYDSEKELLLFGG----KDTMINGV   86 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE--EEE-ECSSCEEEEEEETTTTEEEEEE----TTSCEEEE
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE--Eee-cCCccEEEEEECCCCCEEEEec----CCCeEEEE
Confidence            468999999999 9999999999 9999999998755443  333 6899999999999999988888    78999999


Q ss_pred             ECCCc---cEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeec-CCCccEEEecC
Q 018248           82 DDHEN---RYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQ-NAGPMVMACPG  155 (359)
Q Consensus        82 d~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g  155 (359)
                      ++...   +.+..+. |...|.++.|+++..... .|+.|++||  .++....+..+...+..+++.+ +++.  +++ +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~-~  161 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK--FLT-A  161 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE--EEE-E
T ss_pred             EeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE--EEE-E
Confidence            98654   5566666 889999999954422222 899999999  6778888888999999999988 5443  444 5


Q ss_pred             CCCeeEEEEecCCeeeEEeec-ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          156 LLKGQVRVEDYGTKKSKYITA-HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +.|+.|++|+ .......+.. |...+.+++|+|++. +++++.|+. |++||+++++.+..+..  |...|.+++|+|+
T Consensus       162 ~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~  236 (313)
T 3odt_A          162 SADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVYCIKLLPN  236 (313)
T ss_dssp             ETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEECTT
T ss_pred             ECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEEEEEEecC
Confidence            5799999999 4456666666 899999999999998 889999999 99999999999999986  7789999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      + .|++++.||.|++||+++++..                                          ..+..+.+.+..++
T Consensus       237 ~-~l~~~~~dg~v~iwd~~~~~~~------------------------------------------~~~~~~~~~i~~~~  273 (313)
T 3odt_A          237 G-DIVSCGEDRTVRIWSKENGSLK------------------------------------------QVITLPAISIWSVD  273 (313)
T ss_dssp             S-CEEEEETTSEEEEECTTTCCEE------------------------------------------EEEECSSSCEEEEE
T ss_pred             C-CEEEEecCCEEEEEECCCCcee------------------------------------------EEEeccCceEEEEE
Confidence            9 5889999999999999887621                                          11344567899999


Q ss_pred             ecccCCEEEEEecCCeEEEEEeCC
Q 018248          315 FGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      |+|+++ +++++.||.|++|+++.
T Consensus       274 ~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          274 CMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             ECTTSC-EEEEETTSCEEEEESCG
T ss_pred             EccCCC-EEEEeCCCcEEEEeCCC
Confidence            999988 66799999999999876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=271.61  Aligned_cols=279  Identities=14%  Similarity=0.171  Sum_probs=230.3

Q ss_pred             CCCceEEEEEccCCC-EEEEec-CCceEEEEc----CCCcc------eeee--ecc-----cCCCCceeEEEEeccCCEE
Q 018248            5 DPITIHHLALNQDHG-CFATGT-ETGFRVYLS----DPYKP------IMRR--DFD-----RNPRGGTQLVSMLFRSNII   65 (359)
Q Consensus         5 h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~----~~~~~------~~~~--~~~-----~~h~~~v~~~~~~~~~~~~   65 (359)
                      |..+|.+++|+|+|+ +|++|+ |+.|++|++    .+++.      ....  .+.     .+|...+.+++|+++++.+
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            568999999999999 999999 999999999    77652      2111  111     0257799999999999988


Q ss_pred             EEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCC-----
Q 018248           66 CLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNP-----  136 (359)
Q Consensus        66 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~-----  136 (359)
                      ++++    .|+.|++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..+...     
T Consensus       124 ~~~~----~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          124 VTGV----ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             EEEE----TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             EEEe----CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            8887    789999999 7778888887 899999999999998777   7899999999999998888776665     


Q ss_pred             ----------ceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248          137 ----------TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRV  205 (359)
Q Consensus       137 ----------~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~i  205 (359)
                                +..+++++++.   +++ ++.++.|++|+... ..+..+..|...|.+++|+|++++|++++.|+. |++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i  273 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDDK---FVI-PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRI  273 (425)
T ss_dssp             -------CCCBSCCEEEETTE---EEE-ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEE
T ss_pred             eccccCCcceeeEEEEcCCCE---EEE-EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-EEE
Confidence                      77888888643   444 55799999988765 566778889999999999999999999999999 999


Q ss_pred             EEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeE
Q 018248          206 FNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRF  285 (359)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (359)
                      ||+++++.+..+..  |...|.+++|+|++ +|++++.|+.|++||+++++..                           
T Consensus       274 ~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~---------------------------  323 (425)
T 1r5m_A          274 WHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL---------------------------  323 (425)
T ss_dssp             ECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE---------------------------
T ss_pred             EECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe---------------------------
Confidence            99999998888876  67899999999999 9999999999999999876511                           


Q ss_pred             eeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          286 IRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                     ..+..+...+..++|+|++++|++++.||.|++|++..
T Consensus       324 ---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          324 ---------------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             ---------------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             ---------------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence                           11334567889999999999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-37  Score=257.67  Aligned_cols=246  Identities=13%  Similarity=0.174  Sum_probs=199.5

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc--CCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR--SNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~~d~~i~   79 (359)
                      ..|...|.+++|+|+|++||+|+ |+.|+||+++.........+. +|.+.|..++|++.  ++.++.++    .|++|+
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s----~D~~v~   80 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCS----YDGKVM   80 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEE----TTTEEE
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEc----CCCEEE
Confidence            57999999999999999999999 999999999754333345565 89999999999764  56777666    799999


Q ss_pred             EEECCCcc--EEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccce--eeeeEeccCCCceeeeeecCCC--
Q 018248           80 IWDDHENR--YLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLK--LVDQIETVVNPTGLCDVSQNAG--  147 (359)
Q Consensus        80 iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--  147 (359)
                      +||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++++.  ....+..|...+..++|+|+..  
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99998874  445555 8899999999997  66666   89999999997653  2355678888899999998741  


Q ss_pred             ---------ccEEEecCCCCeeEEEEecCC-e----eeEEeecccccccEEEEccCC---cEEEEEeCCCCeEEEEEcCC
Q 018248          148 ---------PMVMACPGLLKGQVRVEDYGT-K----KSKYITAHASRIASIAMTLDG---RFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       148 ---------~~~l~~~g~~d~~v~~~~~~~-~----~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~~i~iwd~~~  210 (359)
                               ..++++ |+.|+.|++|+.+. .    ....+.+|...|.+++|+|++   .+|++++.|+. |++||+++
T Consensus       161 ~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~  238 (297)
T 2pm7_B          161 DGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDN  238 (297)
T ss_dssp             ---------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESS
T ss_pred             cccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCC
Confidence                     234666 66899999998754 2    456788999999999999984   89999999999 99999987


Q ss_pred             Cc---EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          211 GS---LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       211 ~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      ..   ....+....|...|.+++|+|+|++|++++.|+.|+||+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            53   2233322336789999999999999999999999999998743

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-38  Score=270.80  Aligned_cols=243  Identities=13%  Similarity=0.188  Sum_probs=197.2

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecc-cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFD-RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|++++++++.|+.|+|||+.+++......+. .+|...|.+++++++++.++.++    .|+.|++||
T Consensus        92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs----~dg~v~iwd  167 (357)
T 4g56_B           92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG----KDFSVKVWD  167 (357)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE----TTSCEEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe----CCCeEEEEE
Confidence            3778899999999998777666999999999876544322211 27999999999999999988877    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      +.+++.+..+. |...|.+++|+|++. +++   .|+.|++||+++++....+..  +...+..++|+|++.. ++++ |
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-~la~-g  245 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD-TFAC-G  245 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT-EEEE-E
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc-eEEE-e
Confidence            99999999998 899999999999874 333   789999999998887766543  4556778899998765 3444 6


Q ss_pred             CCCeeEEEEecC-CeeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          156 LLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       156 ~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      +.|+.|++|+.. ++.++.+.+|...|++++|+|++ ++|++|+.|+. |+|||+++++.+..+.   |...|++++|+|
T Consensus       246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~~---H~~~V~~vafsP  321 (357)
T 4g56_B          246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDLS---HRDFVTGVAWSP  321 (357)
T ss_dssp             ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEECC---CSSCEEEEEECS
T ss_pred             ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEECC---CCCCEEEEEEeC
Confidence            689999998875 46778889999999999999987 58999999999 9999999998876653   788999999998


Q ss_pred             -CCCEEEEEcCCCcEEEEEccCCC
Q 018248          234 -NAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       234 -~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                       ++++|++++.||+|++|++.+..
T Consensus       322 ~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          322 LDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SSTTEEEEEETTSCEEEEECC---
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCC
Confidence             89999999999999999997754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-37  Score=263.21  Aligned_cols=236  Identities=11%  Similarity=0.139  Sum_probs=204.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|...|.+++|+|+|++|++|+ |+.+++|++.+.+.  .....+. +|.+.+.++.+.+++. ++.++    .|+.|++
T Consensus        95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s----~d~~i~~  168 (340)
T 1got_B           95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSS----GDTTCAL  168 (340)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEE----TTSCEEE
T ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEE----CCCcEEE
Confidence            4778899999999999999999 99999999986542  2334444 8999999999887654 55555    6899999


Q ss_pred             EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      ||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..++|+|+++.  +++ |+
T Consensus       169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~--l~s-~s  245 (340)
T 1got_B          169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FAT-GS  245 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE--EEE-EE
T ss_pred             EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE--EEE-Ec
Confidence            9999999999988 999999999999998877   7999999999999999999999999999999998865  565 66


Q ss_pred             CCeeEEEEecCC-eeeEEee--cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          157 LKGQVRVEDYGT-KKSKYIT--AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      .|+.|++|+... +.+..+.  .+...|.+++|+|+|++|++|+.|+. |++||+.+++.+..+.+  |...|.+++|+|
T Consensus       246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~~--h~~~v~~~~~s~  322 (340)
T 1got_B          246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLGVTD  322 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEECT
T ss_pred             CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEeec--CCCcEEEEEEcC
Confidence            899999999875 3444443  22347999999999999999999999 99999999999999987  778999999999


Q ss_pred             CCCEEEEEcCCCcEEEEE
Q 018248          234 NAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~  251 (359)
                      +|++|++|+.|++|+|||
T Consensus       323 dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEcCCccEEecC
Confidence            999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.5e-38  Score=273.37  Aligned_cols=277  Identities=12%  Similarity=0.101  Sum_probs=225.4

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      .+++++|+|+|++|++++ |+.|++|++.+.+..  ..+. +| ..+....+.++++.+++++    .|+.|++||+.++
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~  129 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS--KMLK-RA-DYTAVDTAKLQMRRFILGT----TEGDIKVLDSNFN  129 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT--TTSC-SC-CEEEEEEECSSSCEEEEEE----TTSCEEEECTTSC
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee--eEEe-cC-CceEEEEEecCCCEEEEEE----CCCCEEEEeCCCc
Confidence            355899999999999999 999999999875543  2232 23 3444456778888888777    7899999999999


Q ss_pred             cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           87 RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        87 ~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      +....+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..|...+..++|+|++..  +++ ++.|+.|+
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s-~~~d~~v~  206 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN--VLS-ASLDGTIR  206 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE--EEE-EETTSCEE
T ss_pred             ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE--EEE-EcCCCcEE
Confidence            9988876 999999999999998877   7899999999999999999999999999999998775  555 56799999


Q ss_pred             EEecCC-eeeEEeecc------------------------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEe
Q 018248          163 VEDYGT-KKSKYITAH------------------------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEM  217 (359)
Q Consensus       163 ~~~~~~-~~~~~~~~~------------------------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~  217 (359)
                      +|+... +.+..+..|                        ...+.+++|+|++++|++++.||. |++||+++++.+..+
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~  285 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQL  285 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEEc
Confidence            998764 555555542                        245556667899999999999999 999999999988887


Q ss_pred             ecCCCCcceEEEEecCCCC-EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEec
Q 018248          218 RRGAERAEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS  296 (359)
Q Consensus       218 ~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (359)
                      ... |...|.+++|+|+++ +|++++.||.|++||+++++..                                      
T Consensus       286 ~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--------------------------------------  326 (420)
T 3vl1_A          286 PSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--------------------------------------  326 (420)
T ss_dssp             CCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--------------------------------------
T ss_pred             ccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--------------------------------------
Confidence            643 678999999999999 9999999999999999987521                                      


Q ss_pred             ccceeEEee-cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          297 KWSMAQFRL-PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       297 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                         ...+.. +...+..+.+ +++++|++++.||.|++|++...
T Consensus       327 ---~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          327 ---VGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             ---SEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             ---hhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence               011222 3456777754 57789999999999999998763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=276.11  Aligned_cols=283  Identities=13%  Similarity=0.162  Sum_probs=230.8

Q ss_pred             CCCCceEEEEEccCCC-EEEEe----------c-CCceEEEEcCCCcce-eeeecccCCCCceeEEEEeccCCEEEEEec
Q 018248            4 PDPITIHHLALNQDHG-CFATG----------T-ETGFRVYLSDPYKPI-MRRDFDRNPRGGTQLVSMLFRSNIICLVNS   70 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~-~l~~~----------~-d~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~   70 (359)
                      .+...|.+++|+|+|+ +|++|          + |+.|++|++.+++.. ....+  .|...+..++|++++..++.++ 
T Consensus        10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-   86 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGAL-   86 (416)
T ss_dssp             CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEE-
T ss_pred             hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEc-
Confidence            3456899999999997 89999          7 899999999876532 22333  5889999999999999888877 


Q ss_pred             CCCCCCeEEEEECCC----ccEEeeec-cCcceeEEEEecc-eeEEE---ecCeEEEEEcccce------eeee---Eec
Q 018248           71 GPHQSNKVMIWDDHE----NRYLGELS-FRSEVKNVRLRRD-RIVVV---LNQKVYVYNFTDLK------LVDQ---IET  132 (359)
Q Consensus        71 ~~~~d~~i~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~------~~~~---~~~  132 (359)
                         .|+.|++||+.+    .+.+..+. |...|.+++|+|+ +.+++   .|+.|++||+.+++      ....   +..
T Consensus        87 ---~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  163 (416)
T 2pm9_A           87 ---DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS  163 (416)
T ss_dssp             ---SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred             ---cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence               689999999987    35777776 9999999999998 66666   78999999998776      3222   356


Q ss_pred             cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecc------cccccEEEEccCC-cEEEEEeCCC---C
Q 018248          133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAH------ASRIASIAMTLDG-RFVATASSKG---T  201 (359)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~------~~~i~~~~~s~~~-~~l~~~~~dg---~  201 (359)
                      +...+..++|+|++.. ++++ ++.|+.|++|+... +.+..+..+      ...+.+++|+|++ .++++++.|+   .
T Consensus       164 ~~~~v~~~~~~~~~~~-~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAH-VFAS-AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             SSCCCCEEEECSSCTT-EEEE-ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             CCCCeeEEEeCCCCCc-EEEE-EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            7788999999998544 2444 56799999998765 556666655      7889999999997 6899999998   9


Q ss_pred             eEEEEEcCCC-cEEEEee-cCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248          202 LIRVFNTMDG-SLLQEMR-RGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS  278 (359)
Q Consensus       202 ~i~iwd~~~~-~~~~~~~-~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
                       |++||++++ +.+..+. .  |...|.+++|+| ++++|++++.||.|++||+++++..                    
T Consensus       242 -i~~~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~--------------------  298 (416)
T 2pm9_A          242 -ILIWDLRNANTPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL--------------------  298 (416)
T ss_dssp             -CCEEETTSTTSCSBCCCSC--CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE--------------------
T ss_pred             -EEEEeCCCCCCCcEEeecC--ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc--------------------
Confidence             999999986 5555565 4  778999999999 9999999999999999999886511                    


Q ss_pred             ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCCC
Q 018248          279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~  339 (359)
                                            ..+..+.+.+..++|+|++ .+|++++.||.|++|++...
T Consensus       299 ----------------------~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          299 ----------------------SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             ----------------------EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             ----------------------eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence                                  1134456788999999998 89999999999999999764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=273.00  Aligned_cols=310  Identities=12%  Similarity=0.150  Sum_probs=226.8

Q ss_pred             CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCC---Ccce-eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248            3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDP---YKPI-MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus         3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~---~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      ..|.+.|++++|+| ++++|++|+ |+.|+|||+.+   +... ....+  +|...|.+++++++++.++.++    .|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s----~dg  133 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPNFDAFAVSS----KDG  133 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTTSSEEEEEE----TTS
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCCCCEEEEEe----CCC
Confidence            46889999999999 999999999 99999999875   3211 12333  5899999999999888888887    789


Q ss_pred             eEEEEECC---CccEEeeec-------------cCcceeEEE--EecceeEEE---ecCeEEEEEcccceeeeeEec--c
Q 018248           77 KVMIWDDH---ENRYLGELS-------------FRSEVKNVR--LRRDRIVVV---LNQKVYVYNFTDLKLVDQIET--V  133 (359)
Q Consensus        77 ~i~iwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~--~  133 (359)
                      .|++||+.   +++.+..+.             +...+.++.  +++++.+++   .|+.|++||+++++.+..+..  |
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            99999984   554444332             334555655  456777777   889999999999999999987  7


Q ss_pred             CCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEee-cccccccEEEEc----cCCcEEEEEeCCCCeEEEEE
Q 018248          134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYIT-AHASRIASIAMT----LDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       134 ~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~-~~~~~i~~~~~s----~~~~~l~~~~~dg~~i~iwd  207 (359)
                      ...+..++|+|++..  +++ |+.||.|++|+.+. ..+..+. .|...|.+++|+    |++.+|++++.|+. |++||
T Consensus       214 ~~~v~~~~~s~~~~~--l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd  289 (437)
T 3gre_A          214 HGAVSSICIDEECCV--LIL-GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWN  289 (437)
T ss_dssp             GCCEEEEEECTTSCE--EEE-EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEE
T ss_pred             CCceEEEEECCCCCE--EEE-EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEE
Confidence            888999999998764  555 66799999998765 5556665 788899999555    56889999999999 99999


Q ss_pred             cCCCcEEEEeecCC------------------------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCc
Q 018248          208 TMDGSLLQEMRRGA------------------------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSK  263 (359)
Q Consensus       208 ~~~~~~~~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  263 (359)
                      +++++.+..+..+.                        |...|++++|+ ++++|++++.|+.|++||+.+++.......
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            99999988887532                        55678999999 789999999999999999998764321100


Q ss_pred             cccCCCCCccCCCCCceeeeeEee-----eecceE--EecccceeEEeecCCcEEEeeeccc--CCEEEEEecCCeEEEE
Q 018248          264 LHSASEPNLSSKNSSAISSFRFIR-----GVLPKY--FSSKWSMAQFRLPENVQYLVGFGRQ--NNTIVIVGLDGSYYKC  334 (359)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~  334 (359)
                      .            ......+....     ......  ............|.+.|.+++|+++  +.+|++|+.||.|++|
T Consensus       369 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          369 P------------SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             C--------------CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             c------------cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence            0            00000000000     000000  0000111223346789999999998  7899999999999999


Q ss_pred             E
Q 018248          335 E  335 (359)
Q Consensus       335 ~  335 (359)
                      +
T Consensus       437 ~  437 (437)
T 3gre_A          437 Q  437 (437)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.9e-37  Score=266.87  Aligned_cols=286  Identities=9%  Similarity=0.074  Sum_probs=226.0

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ..+....|+|++++|++|+ |+.|++|++++++..  ..+. +|...|..++|+++++.++.++    .|+.|++||+.+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~s----~d~~i~iwd~~~  170 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQ-AHVSEITKLKFFPSGEALISSS----QDMQLKIWSVKD  170 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EETT-SSSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eecc-cccCccEEEEECCCCCEEEEEe----CCCeEEEEeCCC
Confidence            4455567899999999999 999999999865443  4444 8999999999999999888777    789999999999


Q ss_pred             ccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccC------------------------CCc
Q 018248           86 NRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVV------------------------NPT  137 (359)
Q Consensus        86 ~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~------------------------~~~  137 (359)
                      ++.+..+. |...|.+++|+|++..++   .|+.|++||+++++.+..+..+.                        ..+
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            99988888 999999999999998777   78999999999999888886432                        334


Q ss_pred             eeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEe-ecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcE-
Q 018248          138 GLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYI-TAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSL-  213 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~-~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~-  213 (359)
                      ..++|+|+++.  +++ |+.||.|++|+... .....+ ..|...|.+++|+|+++ +|++++.||. |++||+++++. 
T Consensus       251 ~~~~~s~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~  326 (420)
T 3vl1_A          251 NNLEFGTYGKY--VIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECP  326 (420)
T ss_dssp             CTTCSSCTTEE--EEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSC
T ss_pred             cceEEcCCCCE--EEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCc
Confidence            44556666553  555 66799999998765 334444 45888999999999999 9999999999 99999998754 


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY  293 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (359)
                      +..+..+ +...|.++.+ +++++|++++.|+.|++|++........                                 
T Consensus       327 ~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~---------------------------------  371 (420)
T 3vl1_A          327 VGEFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERP---------------------------------  371 (420)
T ss_dssp             SEEEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSC---------------------------------
T ss_pred             hhhhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCcc---------------------------------
Confidence            6666653 5668888855 5788999999999999999988542210                                 


Q ss_pred             EecccceeEEeecCCcEEEeeecccCC---EEEEEecCCeEEEEEeCC
Q 018248          294 FSSKWSMAQFRLPENVQYLVGFGRQNN---TIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~v~~~~~  338 (359)
                      .........+..+.+.+..++|+|+++   .|++++.+|.+.+|+++.
T Consensus       372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          372 AIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            000000011233457889999999999   899999999999998853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8e-37  Score=258.01  Aligned_cols=276  Identities=13%  Similarity=0.145  Sum_probs=227.9

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      +..+|.+++|+|||++++++. ++.+.+|........ ...+  +|...+..+++++++..++.++     |+.|++||+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~h~~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~   79 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-INTL--NHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDI   79 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-EEEE--CCSSCCCEEEECSSSSEEEEEC-----BSEEEEEET
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc-ceec--cCCCceEEEEEecCCcEEEEcC-----CCeEEEEEC
Confidence            467899999999999999888 676666654432222 2233  7999999999999888877665     599999999


Q ss_pred             CCccEEeee------ccCcceeEEEEecceeEEE---ecCeEEEEEcccce--eeeeEeccCCCceeeeeecCCCccEEE
Q 018248           84 HENRYLGEL------SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK--LVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        84 ~~~~~~~~~------~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      .+++....+      .|...|.+++|+|++.+++   .|+.|++||+.+++  ....+..+...+..++++|+++.  ++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~  157 (337)
T 1gxr_A           80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV--CF  157 (337)
T ss_dssp             TSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE--EE
T ss_pred             CCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE--EE
Confidence            876533222      3778999999999998777   78999999998776  56667778888899999998765  55


Q ss_pred             ecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          153 CPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      + ++.|+.|++|+... +....+..|...+.+++|+|++++|++++.|+. |++||+++++.+..+.   +...+.+++|
T Consensus       158 ~-~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~---~~~~v~~~~~  232 (337)
T 1gxr_A          158 S-CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHD---FTSQIFSLGY  232 (337)
T ss_dssp             E-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEE---CSSCEEEEEE
T ss_pred             E-EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeec---CCCceEEEEE
Confidence            4 55799999988754 667778889999999999999999999999999 9999999999888876   5678999999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY  311 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (359)
                      +|++++|++++.++.|++||+++++..                                           .+..+.+.+.
T Consensus       233 s~~~~~l~~~~~~~~i~~~~~~~~~~~-------------------------------------------~~~~~~~~v~  269 (337)
T 1gxr_A          233 CPTGEWLAVGMESSNVEVLHVNKPDKY-------------------------------------------QLHLHESCVL  269 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSCEE-------------------------------------------EECCCSSCEE
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCCeE-------------------------------------------EEcCCcccee
Confidence            999999999999999999999876510                                           1223457889


Q ss_pred             EeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          312 LVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       312 ~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .++|+|++++|++++.||.|++|++..
T Consensus       270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          270 SLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEECCCCCEEEEecCCCcEEEEECCC
Confidence            999999999999999999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-36  Score=261.10  Aligned_cols=275  Identities=10%  Similarity=0.070  Sum_probs=225.8

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      +.+++|++  ..+++++ |+.|++|++++++.......  .|...+..++|+++++.+++++    .|+.|++||+.+++
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~----~dg~i~iwd~~~~~  167 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGL----GNGLVDIYDVESQT  167 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC--CTTCCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCC
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec--CCCCCEEEEEECCCCCEEEEEC----CCCeEEEEECcCCe
Confidence            44567765  4455555 99999999998776644443  4889999999999999888877    68999999999999


Q ss_pred             EEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcc-cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           88 YLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        88 ~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      .+..+. |...|.+++|+++..... .|+.|++||++ ....+..+..|...+..++|+|++..  +++ |+.|+.|++|
T Consensus       168 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s-~~~d~~v~iw  244 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ--LAS-GGNDNVVQIW  244 (401)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-EETTSCEEEE
T ss_pred             EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCE--EEE-EeCCCeEEEc
Confidence            999987 999999999966533333 89999999997 56677888889999999999997764  555 5579999999


Q ss_pred             ecCC-eeeEEeecccccccEEEEccCCc-EEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEE
Q 018248          165 DYGT-KKSKYITAHASRIASIAMTLDGR-FVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       165 ~~~~-~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  240 (359)
                      +... .....+..|...|.+++|+|++. ++++++  .|+. |++||+.+++.+..+.   +...|.+++|+|++++|++
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEE
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEE
Confidence            8875 56677888999999999999775 666655  7999 9999999999998887   4568999999999999998


Q ss_pred             E--cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeeccc
Q 018248          241 S--SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQ  318 (359)
Q Consensus       241 ~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  318 (359)
                      +  +.||.|++|++.+++..                                 .       ...+..+.+.|..++|+|+
T Consensus       321 ~~g~~dg~i~v~~~~~~~~~---------------------------------~-------~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          321 THGFPDNNLSIWSYSSSGLT---------------------------------K-------QVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             EECTTTCEEEEEEEETTEEE---------------------------------E-------EEEEECCSSCCCEEEECTT
T ss_pred             EeecCCCcEEEEecCCccce---------------------------------e-------EEEecCCCCCEEEEEECCC
Confidence            4  48999999999875411                                 0       0113345678899999999


Q ss_pred             CCEEEEEecCCeEEEEEeCC
Q 018248          319 NNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       319 ~~~l~~~~~dg~i~v~~~~~  338 (359)
                      +++|++++.||.|++|++..
T Consensus       361 g~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          361 GRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             SSEEEEECTTSEEEEEECCC
T ss_pred             CCEEEEEeCCCcEEEEECCC
Confidence            99999999999999999976

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.6e-36  Score=261.09  Aligned_cols=276  Identities=12%  Similarity=0.128  Sum_probs=228.6

Q ss_pred             ceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248            8 TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      .++.|+||++ .+||+|.|++|+|||..+++......+. +|...|.+++|+++++.++.++    .|+.|++||+.+++
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~fspdg~~lasgs----~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGT----SSAEVQLWDVQQQK  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTE
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEec-CCCCcEEEEEECCCCCEEEEEE----CCCeEEEEEcCCCc
Confidence            3567999976 5888888999999999998766555554 7888899999999999988877    78999999999999


Q ss_pred             EEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEccc-ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           88 YLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        88 ~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      .+..+. |...+.++.+++.-.... .|+.+++||... ...+..+..|...+..+.+++++..  +++ ++.|+.+++|
T Consensus       181 ~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~--l~s-~~~D~~v~i~  257 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH--LAS-GGNDNLVNVW  257 (420)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-EETTSCEEEE
T ss_pred             EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCe--eee-eeccccceEE
Confidence            999988 889999988875433333 899999999865 4556778889998999999998875  555 5579999998


Q ss_pred             ecCC-----eeeEEeecccccccEEEEccCCc-EEEE--EeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          165 DYGT-----KKSKYITAHASRIASIAMTLDGR-FVAT--ASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       165 ~~~~-----~~~~~~~~~~~~i~~~~~s~~~~-~l~~--~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      +...     ..+.....|...|.+++|+|++. ++++  |+.|+. |++||+.+++.+..+..   ...+.++.|+|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~  333 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSPHYK  333 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEETTTT
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecCCCC
Confidence            8764     24566778999999999999765 5554  457999 99999999999988874   35899999999999


Q ss_pred             EEEEEc--CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          237 WLAASS--DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       237 ~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      .|++++  .|+.|+|||+.+++..                                          ..++.|.+.|.+++
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v------------------------------------------~~l~gH~~~V~~l~  371 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKV------------------------------------------AELKGHTSRVLSLT  371 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEE------------------------------------------EEECCCSSCEEEEE
T ss_pred             eEEEEEecCCCEEEEEECCCCcEE------------------------------------------EEEcCCCCCEEEEE
Confidence            888765  7899999999887621                                          22556778999999


Q ss_pred             ecccCCEEEEEecCCeEEEEEeCC
Q 018248          315 FGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      |+|||++|++|+.||+|++|++..
T Consensus       372 ~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          372 MSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             ECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EcCCCCEEEEEecCCeEEEEECCC
Confidence            999999999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-36  Score=261.75  Aligned_cols=237  Identities=16%  Similarity=0.211  Sum_probs=206.2

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ..|.+++|+|+|++|++|+ |+.|++||+++++..  ..+. +|...|..++|+++++.++.++    .|++|++||+.+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~p~~~~l~s~s----~d~~v~iwd~~~  196 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQ-GHEQDIYSLDYFPSGDKLVSGS----GDRTVRIWDLRT  196 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTT
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEc-cCCCCEEEEEEcCCCCEEEEec----CCCcEEEEECCC
Confidence            3599999999999999999 999999999976544  4444 8999999999999999888777    789999999999


Q ss_pred             ccEEeeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeE-------eccCCCceeeeeecCCCccEEEec
Q 018248           86 NRYLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQI-------ETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        86 ~~~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ++....+.+...+.+++|+| ++.+++   .|+.|++||+++++.+..+       ..|...+..++|+|+++.  +++ 
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--l~s-  273 (393)
T 1erj_A          197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VVS-  273 (393)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--EEE-
T ss_pred             CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE--EEE-
Confidence            99998888888999999999 787777   7999999999988877766       457788899999998865  565 


Q ss_pred             CCCCeeEEEEecCC-------------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248          155 GLLKGQVRVEDYGT-------------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       155 g~~d~~v~~~~~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      |+.|+.|++|+...             .....+.+|...|.+++|+|++++|++|+.|+. |++||+++++.+..+.+  
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~~--  350 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQG--  350 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEEC--
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEECC--
Confidence            66899999998753             234567789999999999999999999999999 99999999999999987  


Q ss_pred             CCcceEEEEecC------CCCEEEEEcCCCcEEEEEccCCC
Q 018248          222 ERAEIYSLAFSS------NAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       222 ~~~~i~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |...|.+++|++      ++++|++|+.||+|+||+++...
T Consensus       351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            778999999876      68899999999999999997643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.3e-37  Score=299.14  Aligned_cols=314  Identities=13%  Similarity=0.165  Sum_probs=248.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.+.|++++|+|+|++|++|+ |+.|++||+.+++..  ..+. +|...|.+++|+++++.++.++    .|+.|++||
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~~----~d~~v~vwd  685 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIK-AHEDEVLCCAFSSDDSYIATCS----ADKKVKIWD  685 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEE
T ss_pred             cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEec-cCCCCEEEEEEecCCCEEEEEe----CCCeEEEEE
Confidence            6899999999999999999999 999999999987655  4444 8999999999999999988887    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +.+++.+..+. |...|.+++|+|+  +.+++   .|+.|++||+.+++.+..+..|...+..++|+|+++.  +++ ++
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~--l~s-~s  762 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL--LAS-CS  762 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE--EEE-EE
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE--EEE-EE
Confidence            99999999998 9999999999994  44555   7899999999999999999999999999999998874  555 56


Q ss_pred             CCeeEEEEecCCe-eeE------------------------------------------------------E-eeccccc
Q 018248          157 LKGQVRVEDYGTK-KSK------------------------------------------------------Y-ITAHASR  180 (359)
Q Consensus       157 ~d~~v~~~~~~~~-~~~------------------------------------------------------~-~~~~~~~  180 (359)
                      .||.|++|+.... ...                                                      . ..+|...
T Consensus       763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  842 (1249)
T 3sfz_A          763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST  842 (1249)
T ss_dssp             SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC
T ss_pred             CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc
Confidence            7999999986432 111                                                      1 1267789


Q ss_pred             ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCC
Q 018248          181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPG  260 (359)
Q Consensus       181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  260 (359)
                      +.+++|+|+++++++++.|+. |++||+.++..+..+..  |...|.+++|+|++++|++++.||.|++|++.+......
T Consensus       843 v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~  919 (1249)
T 3sfz_A          843 IQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG--HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA  919 (1249)
T ss_dssp             CCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCS
T ss_pred             eEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCC--CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeee
Confidence            999999999999999999999 99999999999998887  778999999999999999999999999999875322111


Q ss_pred             C-----------------------------------------CccccCCCCCccCCCCCceeeeeEeeee--cceEEec-
Q 018248          261 T-----------------------------------------SKLHSASEPNLSSKNSSAISSFRFIRGV--LPKYFSS-  296 (359)
Q Consensus       261 ~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-  296 (359)
                      .                                         ....+.++++++.        +-.....  ....++. 
T Consensus       920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~--------~l~~g~~~g~i~i~d~~  991 (1249)
T 3sfz_A          920 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE--------YVAFGDEDGAIKIIELP  991 (1249)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS--------EEEEEETTSCCEEEETT
T ss_pred             ecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC--------EEEEEcCCCCEEEEEcC
Confidence            1                                         0111111222110        0000000  0011111 


Q ss_pred             -ccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          297 -KWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       297 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                       ......+..+.+.|.+++|+|++++|++++.||.|++|++..
T Consensus       992 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             TTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             CCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence             122333455678899999999999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-36  Score=251.80  Aligned_cols=246  Identities=11%  Similarity=0.147  Sum_probs=200.1

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--ccEEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--NRYLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVY  119 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~  119 (359)
                      +|.+.|..++|+++++.++.++    .|++|++||+.+  .+.+..+. |...|.+++|+++  +.+++   .|++|++|
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s----~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             CCcCceEEEEECCCCCEEEEEe----CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            8999999999999999988887    799999999874  36677777 9999999999863  66666   79999999


Q ss_pred             Ecccce--eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeecccccccEEEEccC-----
Q 018248          120 NFTDLK--LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASRIASIAMTLD-----  189 (359)
Q Consensus       120 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~i~~~~~s~~-----  189 (359)
                      |+++++  .+..+..|...+..++|+|+....++++ ++.|+.|++|+.+..   ....+.+|...|.+++|+|+     
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            998764  5566677888999999999843344665 668999999987653   24567889999999999997     


Q ss_pred             --------CcEEEEEeCCCCeEEEEEcCCCc----EEEEeecCCCCcceEEEEecCCC---CEEEEEcCCCcEEEEEccC
Q 018248          190 --------GRFVATASSKGTLIRVFNTMDGS----LLQEMRRGAERAEIYSLAFSSNA---QWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       190 --------~~~l~~~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iw~~~~  254 (359)
                              +++|++|+.|+. |++||+++++    ....+.+  |...|.+++|+|++   ++|++++.|++|+|||++.
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             --------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                    579999999999 9999998876    5556665  77899999999985   8999999999999999987


Q ss_pred             CCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEE
Q 018248          255 DSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKC  334 (359)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  334 (359)
                      .....                              ....+.       ...+.+.+..++|+|++++|++++.||.|++|
T Consensus       239 ~~~~~------------------------------~~~~~~-------~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw  281 (297)
T 2pm7_B          239 EQGPW------------------------------KKTLLK-------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (297)
T ss_dssp             TTSCC------------------------------EEEESS-------SSCCSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             CCCcc------------------------------ceeeee-------cccCCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            53110                              000000       01234678999999999999999999999999


Q ss_pred             EeCC
Q 018248          335 EFDP  338 (359)
Q Consensus       335 ~~~~  338 (359)
                      +...
T Consensus       282 ~~~~  285 (297)
T 2pm7_B          282 KENL  285 (297)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            9875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.1e-37  Score=259.08  Aligned_cols=244  Identities=16%  Similarity=0.190  Sum_probs=195.9

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc--CCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR--SNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~~d~~i~   79 (359)
                      ..|.+.|++++|+|+|++||+|+ |+.|+|||+.+++......+. +|.+.|..++|++.  ++.++.++    .|++|+
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s----~D~~v~   84 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCS----YDRKVI   84 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEE----TTSCEE
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEE----CCCEEE
Confidence            46999999999999999999999 999999999876554445666 89999999999753  67777776    789999


Q ss_pred             EEECCCcc--EEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccce---eeeeEeccCCCceeeeeecCCC-
Q 018248           80 IWDDHENR--YLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLK---LVDQIETVVNPTGLCDVSQNAG-  147 (359)
Q Consensus        80 iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~-  147 (359)
                      +||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++.+.   ....+..|...+..++|+|+.. 
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99998874  555565 8899999999997  66666   89999999997653   2344566777888899988731 


Q ss_pred             --------------ccEEEecCCCCeeEEEEecCC----eeeEEeecccccccEEEEccCC----cEEEEEeCCCCeEEE
Q 018248          148 --------------PMVMACPGLLKGQVRVEDYGT----KKSKYITAHASRIASIAMTLDG----RFVATASSKGTLIRV  205 (359)
Q Consensus       148 --------------~~~l~~~g~~d~~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~~i~i  205 (359)
                                    ..++++ |+.|+.|++|+.+.    .....+.+|...|.+++|+|++    ++|++++.|+. |++
T Consensus       165 ~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v~i  242 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFAS-GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFI  242 (316)
T ss_dssp             ------CCSCCCCCCCBEEC-CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-EEE
T ss_pred             ccccccccccCccccceEEE-ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-EEE
Confidence                          134665 77899999998764    3566788999999999999987    79999999999 999


Q ss_pred             EEcCCCc----EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          206 FNTMDGS----LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       206 wd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      ||+.+..    ....+..  |...|.+++|+|++++|++++.|++|+||+....
T Consensus       243 w~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          243 WTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             EECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             EEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            9987631    1122333  5679999999999999999999999999998743

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8e-37  Score=268.19  Aligned_cols=242  Identities=11%  Similarity=0.197  Sum_probs=193.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc---------eeeeecccCCC------------CceeEEEEecc
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP---------IMRRDFDRNPR------------GGTQLVSMLFR   61 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~---------~~~~~~~~~h~------------~~v~~~~~~~~   61 (359)
                      .+.+.|++++|+|+|++||+|+ |+.|+||++.+++.         .....+. +|.            ..|..++|+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCC
Confidence            4678999999999999999999 99999999986552         1234555 788            88999999998


Q ss_pred             C--CEEEEEecCCCCCCeEEEEECCCccEE---------------------------------------eee--ccCcce
Q 018248           62 S--NIICLVNSGPHQSNKVMIWDDHENRYL---------------------------------------GEL--SFRSEV   98 (359)
Q Consensus        62 ~--~~~~~~~~~~~~d~~i~iwd~~~~~~~---------------------------------------~~~--~~~~~v   98 (359)
                      +  ..++.++    .|+.|++||+.+++..                                       ..+  .|...|
T Consensus       105 ~~~~~l~s~s----~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          105 KNAAQFLLST----NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             CSSSEEEEEE----CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             CCcceEEEeC----CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            7  5677666    7899999998765432                                       122  388999


Q ss_pred             eEEEEecceeEEE--ecCeEEEEEccc-ceeee-------eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC
Q 018248           99 KNVRLRRDRIVVV--LNQKVYVYNFTD-LKLVD-------QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT  168 (359)
Q Consensus        99 ~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~  168 (359)
                      .+++|+|++.+++  .|+.|++||+++ ++.+.       .+..|...+..++|+|++.. ++++ |+.||.|++|+.+.
T Consensus       181 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s-~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          181 NSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVY-SSSKGTIRLCDMRA  258 (447)
T ss_dssp             CEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEE-EETTSCEEEEETTT
T ss_pred             EEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEE-EeCCCeEEEEECcC
Confidence            9999999998888  899999999974 44444       24567888999999998733 2444 66799999999876


Q ss_pred             ee-----eEEeecccc------------cccEEEEccCCcEEEEEeCCCCeEEEEEcCC-CcEEEEeecCCCCc------
Q 018248          169 KK-----SKYITAHAS------------RIASIAMTLDGRFVATASSKGTLIRVFNTMD-GSLLQEMRRGAERA------  224 (359)
Q Consensus       169 ~~-----~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~------  224 (359)
                      ..     ...+..|..            .|.+++|+|++++|++++. +. |++||+++ ++.+..+..  |..      
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~--~~~~~~~l~  334 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQV--HEYLRSKLC  334 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEES--CGGGTTTHH
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeec--ccccccccc
Confidence            44     577887776            8999999999999999999 98 99999997 887777776  322      


Q ss_pred             ---------ceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          225 ---------EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       225 ---------~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                               .+..++|+|++++|++++.||.|++||+.+++
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence                     13459999999999999999999999999876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-36  Score=257.15  Aligned_cols=278  Identities=12%  Similarity=0.057  Sum_probs=225.2

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce-eeeecccCCCCceeEEEEeccCC-EEEEEecCCCCCCeE
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI-MRRDFDRNPRGGTQLVSMLFRSN-IICLVNSGPHQSNKV   78 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~~d~~i   78 (359)
                      .++|.+.|.+++|+|++++|++++ |+.|++|++.+++.. ....+. +|...+..++|+++++ .++.++    .|+.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~----~dg~i   81 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGT----VQGEI   81 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEE----TTSCE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEc----CCCeE
Confidence            468999999999999999999999 999999999876521 112222 6899999999999988 787777    68999


Q ss_pred             EEEEC-CCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEccc---------ceeeeeEeccCCCceeeeee
Q 018248           79 MIWDD-HENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD---------LKLVDQIETVVNPTGLCDVS  143 (359)
Q Consensus        79 ~iwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~  143 (359)
                      ++||+ .+++......  |...|.+++|+| +..++   .|+.|++||+++         ++.+..+. +...+..++++
T Consensus        82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  159 (342)
T 1yfq_A           82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN  159 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred             EEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence            99999 8887765556  889999999999 66655   899999999987         77676666 67778888888


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCC---e-eeEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCC------c
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGT---K-KSKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDG------S  212 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~---~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~------~  212 (359)
                      ++.    +++ ++.++.|++|+...   . .......|...+.+++|+| +++++++++.||. |++|++...      +
T Consensus       160 ~~~----l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~  233 (342)
T 1yfq_A          160 SSR----LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             SSE----EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCT
T ss_pred             CCc----EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcccccc
Confidence            765    444 45799999999876   2 2234456888999999999 9999999999999 999999876      7


Q ss_pred             EEEEeecCC-------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeE
Q 018248          213 LLQEMRRGA-------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRF  285 (359)
Q Consensus       213 ~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (359)
                      ....+..+.       |...|.+++|+|++++|++++.||.|++||+.+++..                           
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------------  286 (342)
T 1yfq_A          234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI---------------------------  286 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE---------------------------
T ss_pred             cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh---------------------------
Confidence            777777631       1349999999999999999999999999999886511                           


Q ss_pred             eeeecceEEecccceeEEeec-CCcEEEeeecccCCEEEEEecCCe-EEEEEe
Q 018248          286 IRGVLPKYFSSKWSMAQFRLP-ENVQYLVGFGRQNNTIVIVGLDGS-YYKCEF  336 (359)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~-i~v~~~  336 (359)
                                     ..+..+ .+.|.+++  |++++|++++.||. .+.|..
T Consensus       287 ---------------~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          287 ---------------KNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---------------EECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             ---------------hhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence                           112334 56788888  99999999999999 665553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=256.10  Aligned_cols=246  Identities=16%  Similarity=0.188  Sum_probs=200.5

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|.+++|+|+|++|++|+ |+.+++|+.+.........+. +|...|..++|+++++.++.++    .|+.|++|
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s----~D~~v~iw  132 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCS----RDKSVWVW  132 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEE----TTSCEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEE----CCCeEEEE
Confidence            46899999999999999999999 999999999876555556666 8999999999999999988888    78999999


Q ss_pred             ECCCcc---EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce--eeeeEeccCCCceeeeeecCCCccEEE
Q 018248           82 DDHENR---YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK--LVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        82 d~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      |+.+++   .+..+. |...|.+++|+|++.+++   .|+.|++||+++++  ....+.+|...+..++|+|+++.  |+
T Consensus       133 d~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~--l~  210 (345)
T 3fm0_A          133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR--LA  210 (345)
T ss_dssp             EECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE--EE
T ss_pred             ECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE--EE
Confidence            998764   345555 889999999999998887   79999999997765  45677889999999999998865  66


Q ss_pred             ecCCCCeeEEEEecCC----------------eeeEEeec-ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc---
Q 018248          153 CPGLLKGQVRVEDYGT----------------KKSKYITA-HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS---  212 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~----------------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~---  212 (359)
                      + |+.|+.|++|+...                ..+..+.+ |...|.+++|+|++..|++++.|+. |++|+...+.   
T Consensus       211 s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~  288 (345)
T 3fm0_A          211 S-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDPQ  288 (345)
T ss_dssp             E-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCTT
T ss_pred             E-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCcc
Confidence            5 66899999997421                12333444 8889999999999999999999999 9999987542   


Q ss_pred             -E----EEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCC
Q 018248          213 -L----LQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       213 -~----~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                       .    ..... ..|...|++++|+|++ .+|++++.||+|++|++.++++.
T Consensus       289 ~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          289 QPTFSLTAHLH-QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             SCCEEEEEEET-TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             eeeEEEEeeec-ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence             1    11111 2377899999999998 59999999999999999987743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=254.00  Aligned_cols=241  Identities=16%  Similarity=0.274  Sum_probs=189.4

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-----ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      |...|.+++|+|++++|++|+ |+.|+||+++...     ......+. +|...|..++|+++++.++.++    .|+.|
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s----~D~~v  131 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCS----RDKSV  131 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEE----TTSCE
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEe----CCCEE
Confidence            899999999999999999999 9999999986321     22334454 8999999999999999888887    79999


Q ss_pred             EEEECCCc----cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc--eeeeeEeccCCCceeeeeecCCCc
Q 018248           79 MIWDDHEN----RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL--KLVDQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        79 ~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  148 (359)
                      ++||+...    +++..+. |...|.+++|+|++.+++   .|++|++||..++  +++..+.+|...+..++|+|++..
T Consensus       132 ~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  211 (330)
T 2hes_X          132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV  211 (330)
T ss_dssp             EEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred             EEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence            99998432    4566666 889999999999998887   7999999998765  677888899999999999998655


Q ss_pred             cEEEecCCCCeeEEEEecCCe---------eeEEeec-ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc--EEEE
Q 018248          149 MVMACPGLLKGQVRVEDYGTK---------KSKYITA-HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS--LLQE  216 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~~---------~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~--~~~~  216 (359)
                      ..+++ |+.|+.|++|+....         ....+.. |...|.+++|++++ +|++++.||. |++||..+++  ....
T Consensus       212 ~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~~~  288 (330)
T 2hes_X          212 FRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVFAK  288 (330)
T ss_dssp             CEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEEEE
T ss_pred             eEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEEec
Confidence            55776 668999999987542         3334444 89999999999766 7899999999 9999998874  2333


Q ss_pred             eecCCCCc-ceEEEEecC--CCCEEEEEcCCCcEEEEEccC
Q 018248          217 MRRGAERA-EIYSLAFSS--NAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       217 ~~~~~~~~-~i~~~~~s~--~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .. ..|.. .|.+++|+|  ++++|++++.||+|+||+++.
T Consensus       289 ~~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          289 RA-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ES-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cc-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            32 22555 899999999  789999999999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.5e-36  Score=249.70  Aligned_cols=244  Identities=10%  Similarity=0.189  Sum_probs=208.5

Q ss_pred             eeeeecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEECCC-----ccEEeeec-cCcceeEEEEecceeEEE-
Q 018248           40 IMRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDDHE-----NRYLGELS-FRSEVKNVRLRRDRIVVV-  111 (359)
Q Consensus        40 ~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~-  111 (359)
                      .+...+. ||.+.|..++++++. +.++.++    .|++|++|++..     +.++..+. |...|.+++|+|++.+++ 
T Consensus         8 ~l~~~l~-gH~~~V~~l~~~~~~~~~l~s~s----~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s   82 (319)
T 3frx_A            8 VLRGTLE-GHNGWVTSLATSAGQPNLLLSAS----RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS   82 (319)
T ss_dssp             EEEEEEC-CCSSCEEEEEECSSCTTEEEEEE----TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEEc-cccceEEEEEccCCCccEEEEec----CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence            3345565 999999999999865 6677666    799999999764     34566666 899999999999998887 


Q ss_pred             --ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccC
Q 018248          112 --LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLD  189 (359)
Q Consensus       112 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~  189 (359)
                        .|++|++||+.+++.+..+.+|...+..++++|++..  +++ |+.|+.|++|+.++..+..+.+|...|.+++|+|.
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s-~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IIS-GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCE--EEE-EETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred             EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE--EEE-EeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence              7999999999999999999999999999999998764  555 66899999999999999999999999999999985


Q ss_pred             ------CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCc
Q 018248          190 ------GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSK  263 (359)
Q Consensus       190 ------~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  263 (359)
                            +..|++++.|+. |++||+++++....+.+  |...|.+++|+|++++|++++.||.|+|||+.+++..     
T Consensus       160 ~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~-----  231 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIG--HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----  231 (319)
T ss_dssp             ------CCEEEEEETTSC-EEEEETTTTEEEEEECC--CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----
T ss_pred             CCCCCCccEEEEEeCCCE-EEEEECCcchhheeecC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----
Confidence                  448999999999 99999999998888876  7789999999999999999999999999999886511     


Q ss_pred             cccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          264 LHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                                  ..         +. ..+.+..++|+|++..|++++.++ +++|++++
T Consensus       232 ----------------------------~~---------~~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~  267 (319)
T 3frx_A          232 ----------------------------YT---------LS-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDP  267 (319)
T ss_dssp             ----------------------------EE---------EE-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETT
T ss_pred             ----------------------------EE---------ec-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCc
Confidence                                        00         11 124688999999999999887665 99999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.5e-36  Score=254.93  Aligned_cols=236  Identities=16%  Similarity=0.169  Sum_probs=203.4

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc----ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      |...|.+++|+|+|.+|++|+ |+.+++|++....    ......+. +|...+..++|++++..++.++    .|++|+
T Consensus       105 ~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s----~D~~v~  179 (354)
T 2pbi_B          105 PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTAS----GDGTCA  179 (354)
T ss_dssp             SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEE----TTSEEE
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEe----CCCcEE
Confidence            567899999999999999999 9999999986432    11223333 7999999999999998888877    789999


Q ss_pred             EEECCCccEEeeec-cCcceeEEEEec--ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           80 IWDDHENRYLGELS-FRSEVKNVRLRR--DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        80 iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      +||+.+++.+..+. |...|.+++++|  ++..++   .|+.|++||+++++.+..+..|...+..++|+|+++.  +++
T Consensus       180 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~--l~s  257 (354)
T 2pbi_B          180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FAS  257 (354)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEE
T ss_pred             EEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE--EEE
Confidence            99999999999998 899999999987  456666   7999999999999999999999999999999998864  565


Q ss_pred             cCCCCeeEEEEecCCe-eeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          154 PGLLKGQVRVEDYGTK-KSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~-~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                       |+.|+.|++|+.+.. .+..+..  +...+.+++|+|++++|++|+.|+. |++||+.+++.+..+.+  |...|++++
T Consensus       258 -~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~~--h~~~v~~l~  333 (354)
T 2pbi_B          258 -GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILFG--HENRVSTLR  333 (354)
T ss_dssp             -EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECC--CSSCEEEEE
T ss_pred             -EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEEC--CCCcEEEEE
Confidence             668999999998764 3444433  2347889999999999999999999 99999999999988876  778999999


Q ss_pred             ecCCCCEEEEEcCCCcEEEEE
Q 018248          231 FSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       231 ~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      |+|+|++|++++.|++|+||+
T Consensus       334 ~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          334 VSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.3e-36  Score=280.64  Aligned_cols=280  Identities=11%  Similarity=0.167  Sum_probs=236.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.+.|.+++|+|+|++|++|+ ||.|+|||+.+++..  ..+. +|...+..++|+++++.+++++    .|+.|++||
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vw~   83 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGS----DDFRIRVFN   83 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE--EEEe-cCCCcEEEEEEeCCCCEEEEEe----CCCeEEEEE
Confidence            5889999999999999999999 999999999886655  3444 7899999999999999998888    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeec-CCCccEEEecCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQ-NAGPMVMACPGL  156 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~  156 (359)
                      +.+++.+..+. |...|.+++|+|++..++   .|+.|++||+.++ .....+..|...+..++|+| ++..  +++ ++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l~~-~~  160 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST--FAS-GC  160 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE--EEE-EE
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE--EEE-Ee
Confidence            99999999988 999999999999998777   7899999999876 67778888999999999999 5443  444 55


Q ss_pred             CCeeEEEEecCC-eeeEEeecc-cccccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248          157 LKGQVRVEDYGT-KKSKYITAH-ASRIASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS  232 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~~~-~~~i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  232 (359)
                      .||.|++|+... .....+..+ ...+.+++|+|  ++.+|++++.||. |++||+.+++.+..+..  |...|.+++|+
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~~~~~~  237 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSFAVFH  237 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEEc
Confidence            799999998754 445555544 48999999999  9999999999999 99999999999998886  67899999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL  312 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (359)
                      |++++|++++.||.|++||+.+++..                                          ..+..+.+.+.+
T Consensus       238 ~~~~~l~~~~~dg~v~vwd~~~~~~~------------------------------------------~~~~~~~~~v~~  275 (814)
T 3mkq_A          238 PTLPIIISGSEDGTLKIWNSSTYKVE------------------------------------------KTLNVGLERSWC  275 (814)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTCSEE------------------------------------------EEECCSSSSEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEE------------------------------------------EEeecCCCcEEE
Confidence            99999999999999999999886511                                          113344568899


Q ss_pred             eeecccCCE-EEEEecCCeEEEEEeCC
Q 018248          313 VGFGRQNNT-IVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       313 ~~~s~~~~~-l~~~~~dg~i~v~~~~~  338 (359)
                      ++|+|+++. +++++.++.+.+|++..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          276 IATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             EEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             EEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            999999864 35555667788888754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-36  Score=280.91  Aligned_cols=199  Identities=8%  Similarity=0.064  Sum_probs=165.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|++++|+|++++||+|+ |+.|+||+....+..  ..+  .|...|..++|++ +..++.++    .|++|++||
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--~~~--~~~~~V~~l~fsp-g~~L~S~s----~D~~v~lWd   85 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--IKL--EDRSAIKEMRFVK-GIYLVVIN----AKDTVYVLS   85 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--EEC--SSCCCEEEEEEET-TTEEEEEE----TTCEEEEEE
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--EEc--CCCCCEEEEEEcC-CCEEEEEE----CcCeEEEEE
Confidence            4789999999999999999999 999999998764433  333  4788999999999 66666666    789999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceee-----------eeEeccCCCceeeeeecCCCc
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLV-----------DQIETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  148 (359)
                      +.+++.+..+.+...|.+++|+|++.+++   .||.|++||+++++..           ..+..|...+..++|+|++..
T Consensus        86 ~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~  165 (902)
T 2oaj_A           86 LYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG  165 (902)
T ss_dssp             TTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred             CCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence            99999999998888999999999999888   8999999999887753           223457788999999997543


Q ss_pred             cEEEecCCCCeeEEEEecCC-eeeEEeecc------------------cccccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248          149 MVMACPGLLKGQVRVEDYGT-KKSKYITAH------------------ASRIASIAMTLDGRFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~------------------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~  209 (359)
                      . +++ |+.|+.| +|+... +.++.+..|                  ...|.+++|+|+|++|++++.|+. |++||++
T Consensus       166 ~-l~~-g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~  241 (902)
T 2oaj_A          166 T-VLI-SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDAN  241 (902)
T ss_dssp             E-EEE-ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETT
T ss_pred             E-EEE-EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECC
Confidence            2 444 6689999 999875 445555544                  577999999999999999999999 9999998


Q ss_pred             CCcEEE
Q 018248          210 DGSLLQ  215 (359)
Q Consensus       210 ~~~~~~  215 (359)
                      +++++.
T Consensus       242 ~g~~~~  247 (902)
T 2oaj_A          242 SGHMIM  247 (902)
T ss_dssp             TCCEEE
T ss_pred             CCcEEE
Confidence            887664

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=257.19  Aligned_cols=288  Identities=11%  Similarity=0.060  Sum_probs=229.1

Q ss_pred             CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecc----------cCCCCceeEEEEec-cCCEEEEEe
Q 018248            3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFD----------RNPRGGTQLVSMLF-RSNIICLVN   69 (359)
Q Consensus         3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~-~~~~~~~~~   69 (359)
                      ..|.+.|.+++|+| ++++|++|+ |+.|++|++++++........          .+|...+..++|++ ++..++.++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            45999999999999 999999999 999999999976554332211          15899999999999 556777666


Q ss_pred             cCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce---eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeee
Q 018248           70 SGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR---IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVS  143 (359)
Q Consensus        70 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (359)
                          .|+.|++||+.+++.+..+.+...+.++.++|.+   .+++   .++.|++||+++++.+..+..|...+..++|+
T Consensus       120 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~  195 (408)
T 4a11_B          120 ----FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS  195 (408)
T ss_dssp             ----TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred             ----CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence                6899999999999999999999999999999854   3555   89999999999999999999999999999999


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCCe--eeEEe---------------ecccccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGTK--KSKYI---------------TAHASRIASIAMTLDGRFVATASSKGTLIRVF  206 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~~--~~~~~---------------~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw  206 (359)
                      |+++.+ +++ ++.||.|++|+.+..  ....+               ..|...|.+++|+|++++|++++.|+. |++|
T Consensus       196 ~~~~~l-l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vw  272 (408)
T 4a11_B          196 PRYDYI-LAT-ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLW  272 (408)
T ss_dssp             SSCTTE-EEE-EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEE
T ss_pred             CCCCcE-EEE-EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEE
Confidence            998753 333 567999999988642  33333               568889999999999999999999999 9999


Q ss_pred             EcCCCcEEEEeecCCC---CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeee
Q 018248          207 NTMDGSLLQEMRRGAE---RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSF  283 (359)
Q Consensus       207 d~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (359)
                      |+.+++....+.....   ...+........+..+++++.++.|++||+.+++..                         
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------------------------  327 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-------------------------  327 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE-------------------------
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce-------------------------
Confidence            9999876554432111   112222222334556667788999999999887621                         


Q ss_pred             eEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                       ..+..+.+.|.+++|+|++++|++++.||.|++|++...
T Consensus       328 -----------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          328 -----------------TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             -----------------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             -----------------eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence                             123446678999999999999999999999999999863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.3e-35  Score=244.07  Aligned_cols=275  Identities=11%  Similarity=0.122  Sum_probs=223.4

Q ss_pred             eEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248            9 IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      .++|+||+++ +||+|.|++|+|||+++++......+. +|...|.+++++++++.++.++    .|+.|++||+.+++.
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs----~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGT----SSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEec-CCCCeEEEEEECCCCCEEEEEE----CCCcEEEeecCCcee
Confidence            4679999986 888888999999999988766555554 7888899999999999988877    799999999999999


Q ss_pred             Eeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEe
Q 018248           89 LGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED  165 (359)
Q Consensus        89 ~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~  165 (359)
                      +..+. |...+.++.+.+...... .++.+++|+.... ..+..+..|...+..+.+.++++.  +++ ++.|+.|++|+
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s-~~~d~~i~iwd  178 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH--LAS-GGNDNLVNVWP  178 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-EETTSCEEEEE
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE--EEE-EecCcceeEEE
Confidence            99988 888887776655433333 8899999998654 556677888888888888888765  555 66799999998


Q ss_pred             cCCe-----eeEEeecccccccEEEEccCCcE---EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          166 YGTK-----KSKYITAHASRIASIAMTLDGRF---VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       166 ~~~~-----~~~~~~~~~~~i~~~~~s~~~~~---l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      ....     .......+...|.+++++|++..   +++++.++. |++||.+.........   +...+..+.|+|+++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~  254 (318)
T 4ggc_A          179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVD---AHSQVCSILWSPHYKE  254 (318)
T ss_dssp             SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEETTTTE
T ss_pred             CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccccccccccc---ceeeeeeeeecccccc
Confidence            7642     34556678889999999997763   346678888 9999999988877665   4568999999999998


Q ss_pred             EEEEc--CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee
Q 018248          238 LAASS--DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF  315 (359)
Q Consensus       238 l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  315 (359)
                      +++++  .|+.|+|||+++++..                                          ..++.|.+.|++++|
T Consensus       255 ~~~~sg~~d~~i~iwd~~~~~~~------------------------------------------~~l~gH~~~V~~l~~  292 (318)
T 4ggc_A          255 LISGHGFAQNQLVIWKYPTMAKV------------------------------------------AELKGHTSRVLSLTM  292 (318)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEE------------------------------------------EEECCCSSCEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCcEE------------------------------------------EEEcCCCCCEEEEEE
Confidence            87654  7999999999887621                                          124557789999999


Q ss_pred             cccCCEEEEEecCCeEEEEEeCC
Q 018248          316 GRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       316 s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      +||+++|++|+.||+|++|++..
T Consensus       293 spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          293 SPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CTTSSCEEEEETTTEEEEECCSC
T ss_pred             cCCCCEEEEEecCCeEEEEECCC
Confidence            99999999999999999998854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=254.28  Aligned_cols=281  Identities=11%  Similarity=0.068  Sum_probs=222.3

Q ss_pred             CCCCCceEEEEEccC---CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            3 QPDPITIHHLALNQD---HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~---g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      ..|.+.|++++|+|+   |++|++|+ |+.|++|++++........+. +|...+..++|+++++.++.++    .|+.|
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~----~dg~v  110 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTAS----CDKTA  110 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEE----TTSEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEc----CCCcE
Confidence            579999999999999   69999999 999999999974444434444 7999999999999999888877    78999


Q ss_pred             EEEECCCccEEeeeccCcceeEEEE--ecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           79 MIWDDHENRYLGELSFRSEVKNVRL--RRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      ++||+.+++.+....|...|.+++|  +|++.+++   .|+.|++||+++++.+..+..+. .  ..++.+.....++  
T Consensus       111 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~--  185 (368)
T 3mmy_A          111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R--CYCADVIYPMAVV--  185 (368)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C--EEEEEEETTEEEE--
T ss_pred             EEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C--ceEEEecCCeeEE--
Confidence            9999999998887779999999999  88888776   79999999999999888887654 2  3344444444333  


Q ss_pred             cCCCCeeEEEEecCCeeeE--Ee-ecccccccEEEEccCCcE----EEEEeCCCCeEEEEEcCCC---cEEEEeecCCCC
Q 018248          154 PGLLKGQVRVEDYGTKKSK--YI-TAHASRIASIAMTLDGRF----VATASSKGTLIRVFNTMDG---SLLQEMRRGAER  223 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~~~~--~~-~~~~~~i~~~~~s~~~~~----l~~~~~dg~~i~iwd~~~~---~~~~~~~~~~~~  223 (359)
                       +..++.+.+|+.......  .. ..+...+.++++.++...    +++++.|+. |++||++..   +.+..+..  |.
T Consensus       186 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~--~~  261 (368)
T 3mmy_A          186 -ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFKC--HR  261 (368)
T ss_dssp             -EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEEC--SE
T ss_pred             -EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccceeeee--ee
Confidence             336889999888764322  21 233455667777665544    999999999 999999887   45566665  33


Q ss_pred             c------------ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecc
Q 018248          224 A------------EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLP  291 (359)
Q Consensus       224 ~------------~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (359)
                      .            .|++++|+|++++|++++.||.|++||+++++..                                 
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------  308 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL---------------------------------  308 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE---------------------------------
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE---------------------------------
Confidence            3            6999999999999999999999999999976511                                 


Q ss_pred             eEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          292 KYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                               ..+..+.+.|..++|+|++++|++++.||..+.|++...
T Consensus       309 ---------~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          309 ---------KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             ---------EECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             ---------EEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence                     113345678999999999999999999997777765543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-36  Score=252.72  Aligned_cols=245  Identities=13%  Similarity=0.166  Sum_probs=197.0

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-cCcceeEEEEec--ceeEEE---ecCeEEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-FRSEVKNVRLRR--DRIVVV---LNQKVYVY  119 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~--~~~~~~---~d~~i~i~  119 (359)
                      +|.+.|..++|+++++.++.++    .|++|++||+.+++  .+..+. |...|.+++|++  ++.+++   .|++|++|
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs----~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCS----SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEE----TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             cccCeEEEeeEcCCCCEEEEEe----CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            8999999999999999988887    79999999998764  456666 999999999975  366666   79999999


Q ss_pred             Ecccc--eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee----eEEeecccccccEEEEccC----
Q 018248          120 NFTDL--KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----SKYITAHASRIASIAMTLD----  189 (359)
Q Consensus       120 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~----~~~~~~~~~~i~~~~~s~~----  189 (359)
                      |++++  +....+..|...+..++|+|+....++++ |+.|+.|++|+.+...    ...+.+|...+.+++|+|+    
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            99876  35666778899999999999855455776 7789999999887532    3445688999999999997    


Q ss_pred             -------------CcEEEEEeCCCCeEEEEEcCCC---cEEEEeecCCCCcceEEEEecCCC----CEEEEEcCCCcEEE
Q 018248          190 -------------GRFVATASSKGTLIRVFNTMDG---SLLQEMRRGAERAEIYSLAFSSNA----QWLAASSDKGTVHV  249 (359)
Q Consensus       190 -------------~~~l~~~~~dg~~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i  249 (359)
                                   +++|++|+.|+. |++||++..   +.+..+..  |...|.+++|+|++    ++|++++.|++|+|
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             cccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                         478999999999 999999765   35556665  77899999999987    89999999999999


Q ss_pred             EEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCC
Q 018248          250 FGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDG  329 (359)
Q Consensus       250 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  329 (359)
                      |+++......                             +..         ..+..+.+.|.+++|+|++++|++++.||
T Consensus       243 w~~~~~~~~~-----------------------------~~~---------~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          243 WTCDDASSNT-----------------------------WSP---------KLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             EECSSTTCCC-----------------------------CBC---------CEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             EEccCccccc-----------------------------hhh---------hhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            9998743110                             000         01223457899999999999999999999


Q ss_pred             eEEEEEeCC
Q 018248          330 SYYKCEFDP  338 (359)
Q Consensus       330 ~i~v~~~~~  338 (359)
                      .|++|+...
T Consensus       285 ~v~lw~~~~  293 (316)
T 3bg1_A          285 KVTLWKESV  293 (316)
T ss_dssp             CEEEEEECT
T ss_pred             eEEEEEECC
Confidence            999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.5e-35  Score=256.55  Aligned_cols=271  Identities=18%  Similarity=0.245  Sum_probs=219.1

Q ss_pred             CCCCc-eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPIT-IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~-v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|... +.++.+  ++++|++|+ |+.|++||+.+++..  ..+. +|.+.|..+++++++ .++.++    .|+.|++|
T Consensus       119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~-~h~~~V~~l~~~~~~-~l~s~s----~dg~i~vw  188 (464)
T 3v7d_B          119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGG-ILVSGS----TDRTVRVW  188 (464)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECSTT-EEEEEE----TTSCEEEE
T ss_pred             CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE--EEEe-CCCcCEEEEEEcCCC-EEEEEe----CCCCEEEE
Confidence            46666 466665  567999999 999999999987654  4454 899999999998766 555555    68999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEec--ceeEEE---ecCeEEEEEccccee-----------------------eeeEec
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRR--DRIVVV---LNQKVYVYNFTDLKL-----------------------VDQIET  132 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~---~d~~i~i~d~~~~~~-----------------------~~~~~~  132 (359)
                      |+.+++.+..+. |...|.+++|++  ++.+++   .|+.|++||+.+++.                       +..+..
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            999999999998 999999999984  666666   899999999977653                       333444


Q ss_pred             cCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                      |...+  .+++++++.  +++ |+.|+.|++|+.. ++.+..+.+|...|.+++|+|++++|++|+.||. |++||++++
T Consensus       269 ~~~~v--~~~~~~~~~--l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~  342 (464)
T 3v7d_B          269 HMASV--RTVSGHGNI--VVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENG  342 (464)
T ss_dssp             CSSCE--EEEEEETTE--EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTT
T ss_pred             ccceE--EEEcCCCCE--EEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC
Confidence            54443  455666654  555 5679999998875 4677888899999999999999999999999999 999999999


Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecc
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLP  291 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (359)
                      +.+..+..  |...|.+++|+  +++|++++.||.|++||+.+....                                 
T Consensus       343 ~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~---------------------------------  385 (464)
T 3v7d_B          343 ELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK---------------------------------  385 (464)
T ss_dssp             EEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE---------------------------------
T ss_pred             cEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee---------------------------------
Confidence            99999987  77899999997  579999999999999999876511                                 


Q ss_pred             eEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          292 KYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                        +.       . .+...+..++|+|++++|++++ ||.|++|++..
T Consensus       386 --~~-------~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          386 --FS-------Y-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             --EE-------E-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             --ee-------e-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence              00       0 1234567789999999999988 99999999876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.9e-35  Score=266.95  Aligned_cols=281  Identities=11%  Similarity=0.161  Sum_probs=223.1

Q ss_pred             CCCC---ceEEEEEccC-CCEEEEec-CCceEEEEcCCCcceeeeeccc---CCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            4 PDPI---TIHHLALNQD-HGCFATGT-ETGFRVYLSDPYKPIMRRDFDR---NPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         4 ~h~~---~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      .|..   .|.+++|+|+ +++|++++ |+.|++||+.+++..  ..+..   +|...+..++++ +++.++.++    .|
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~----~d  273 (615)
T 1pgu_A          201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--KYIEDDQEPVQGGIFALSWL-DSQKFATVG----AD  273 (615)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE--EECCBTTBCCCSCEEEEEES-SSSEEEEEE----TT
T ss_pred             ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe--EEecccccccCCceEEEEEc-CCCEEEEEc----CC
Confidence            4666   8999999999 99999999 999999999887655  34422   589999999999 888888777    78


Q ss_pred             CeEEEEECCCccEEeeecc-----CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecC--
Q 018248           76 NKVMIWDDHENRYLGELSF-----RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN--  145 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (359)
                      +.|++||+.+++.+..+..     ...+.++.+. ++..++   .++.|++||+.+++.+..+..|...+..+++ |+  
T Consensus       274 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~  351 (615)
T 1pgu_A          274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLI  351 (615)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcE
Confidence            9999999999999888873     3677888886 444444   8999999999888887777666655554444 22  


Q ss_pred             -------------------------------CCc----------------------------------------------
Q 018248          146 -------------------------------AGP----------------------------------------------  148 (359)
Q Consensus       146 -------------------------------~~~----------------------------------------------  148 (359)
                                                     +..                                              
T Consensus       352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  431 (615)
T 1pgu_A          352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI  431 (615)
T ss_dssp             EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred             EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence                                           111                                              


Q ss_pred             -------------------------cEEEecCCC-CeeEEEEecCCeee--EEeecccccccEEEEccCCcEEEEEeCCC
Q 018248          149 -------------------------MVMACPGLL-KGQVRVEDYGTKKS--KYITAHASRIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       149 -------------------------~~l~~~g~~-d~~v~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  200 (359)
                                               .++++ ++. |+.|++|+......  ..+..|...|.+++|+|++++|++++.|+
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  510 (615)
T 1pgu_A          432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG  510 (615)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECSSEEEE-EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeccCCceeeecccCCCceEEEEcCCEEEE-eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC
Confidence                                     11222 233 66666666665444  55677899999999999999999999999


Q ss_pred             CeEEEEEcCCCcEEEEeecCCCCcceEEEEecC----------CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCC
Q 018248          201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS----------NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEP  270 (359)
Q Consensus       201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  270 (359)
                      . |++||+.+++.+..+... |...|++++|+|          ++++|++++.||.|++||++++...            
T Consensus       511 ~-i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------  576 (615)
T 1pgu_A          511 K-ILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI------------  576 (615)
T ss_dssp             C-EEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC------------
T ss_pred             e-EEEeeCCCCcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee------------
Confidence            9 999999999998877642 678999999999          9999999999999999999886311            


Q ss_pred             CccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          271 NLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                                   ...+..|.+.|.+++|+|+++ |++++.||.|++|+++.
T Consensus       577 -----------------------------~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          577 -----------------------------IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             -----------------------------EEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             -----------------------------chhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence                                         111334567899999999999 99999999999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.3e-36  Score=255.92  Aligned_cols=244  Identities=12%  Similarity=0.199  Sum_probs=201.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-----ceeeeecccCCCCceeEEEEeccCC-EEEEEecCCCCCC
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-----PIMRRDFDRNPRGGTQLVSMLFRSN-IICLVNSGPHQSN   76 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~~d~   76 (359)
                      .|...|.+++|+|+|++|++|+ |+.+++|++....     ......+. +|.+.+..+.+.++.. .++.++    .|+
T Consensus       106 ~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s----~D~  180 (380)
T 3iz6_a          106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGS----GDQ  180 (380)
T ss_dssp             CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEEC----TTS
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEEC----CCC
Confidence            4778899999999999999999 9999999987432     12223344 8999999998888754 455555    689


Q ss_pred             eEEEEECCCccEEeee-----c-cCcceeEEEEec-ceeEEE---ecCeEEEEEcc-cceeeeeEeccCCCceeeeeecC
Q 018248           77 KVMIWDDHENRYLGEL-----S-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~-----~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                      +|++||+.+++.+..+     . |...|.++.|++ ++.+++   .|+.|++||++ ..+.+..+.+|...+..++|+|+
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~  260 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD  260 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence            9999999999988776     3 778899999987 666666   89999999997 45778888899999999999998


Q ss_pred             CCccEEEecCCCCeeEEEEecCC-eeeEEeeccc-------ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEe
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHA-------SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEM  217 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~  217 (359)
                      +..  +++ |+.|+.|++|+... ..+..+..+.       ..|.+++|+|+|++|++|+.||. |++||+.+++.+..+
T Consensus       261 ~~~--l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          261 GQR--FGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEMVLNL  336 (380)
T ss_dssp             SSE--EEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCEEEEE
T ss_pred             CCe--EEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCceEEEE
Confidence            865  665 77899999998875 4555554332       34899999999999999999999 999999999988777


Q ss_pred             ec--CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          218 RR--GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       218 ~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..  ..|.+.|.+++|+|+|++|++|+.|++|+||++...+
T Consensus       337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            32  2377899999999999999999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.9e-35  Score=248.65  Aligned_cols=243  Identities=15%  Similarity=0.223  Sum_probs=200.1

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEec--cCCEEEEEecCCCCCCe
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLF--RSNIICLVNSGPHQSNK   77 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~~~~d~~   77 (359)
                      ..|.+.|++++|+|++++|++|+ |+.|++|++.+...  .....+. +|...|..++|++  +++.++.++    .|+.
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~----~dg~   82 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASAS----YDKT   82 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEE----TTSC
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEc----CCCe
Confidence            46999999999999999999999 99999999986543  2334444 8999999999998  477777777    7899


Q ss_pred             EEEEECCCc---------cEEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccceeeeeEe-----------
Q 018248           78 VMIWDDHEN---------RYLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLKLVDQIE-----------  131 (359)
Q Consensus        78 i~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~~~~~~-----------  131 (359)
                      |++||+.++         +.+..+. |...|.+++|+|+  +.+++   .|+.|++||+++++.+..+.           
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            999999886         4566666 8899999999998  87776   79999999998776554433           


Q ss_pred             --ccCCCceeeeeecC---CCccEEEecCCCCeeEEEEecCCee---eEEeecccccccEEEEccCC----cEEEEEeCC
Q 018248          132 --TVVNPTGLCDVSQN---AGPMVMACPGLLKGQVRVEDYGTKK---SKYITAHASRIASIAMTLDG----RFVATASSK  199 (359)
Q Consensus       132 --~~~~~~~~~~~~~~---~~~~~l~~~g~~d~~v~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d  199 (359)
                        .+...+.+++|+|+   +.  .+++ ++.++.+.+|......   +..+.+|...|.+++|+|++    ++|++++.|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~--~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPE--KLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCC--EEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             cCCcccceeEEEeccCCCCCc--EEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence              45667788899887   44  3554 5568888776655433   56678899999999999998    899999999


Q ss_pred             CCeEEEEEcCCC----------------------------------------------cEEEEeecCCCCcceEEEEecC
Q 018248          200 GTLIRVFNTMDG----------------------------------------------SLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       200 g~~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      |. |++||++++                                              +.+..+..  |...|++++|+|
T Consensus       240 g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~  316 (351)
T 3f3f_A          240 GR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNL  316 (351)
T ss_dssp             SC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEEECS
T ss_pred             Ce-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEEEcC
Confidence            99 999999875                                              45555655  778999999999


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCC
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++++|++++.||.|+||++.+++
T Consensus       317 ~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          317 TGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             SSCCEEEEETTSCEEEEEECTTS
T ss_pred             CCCEEEEecCCCcEEEEecCcCc
Confidence            99999999999999999999876

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-34  Score=240.47  Aligned_cols=248  Identities=15%  Similarity=0.242  Sum_probs=206.9

Q ss_pred             eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEE
Q 018248           42 RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVY  117 (359)
Q Consensus        42 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~  117 (359)
                      ...+. +|...|..++++++++.++.++    .|+.|++|++.+++....+. |...|.+++|+|++.+++   .|+.|+
T Consensus        16 ~~~~~-gh~~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           16 KFTLA-GHTKAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             EEEEC-CCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEEc-ccCCcEEEEEECCCCCEEEEee----CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            34555 8999999999999999888877    78999999999999988887 899999999999998887   799999


Q ss_pred             EEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEE
Q 018248          118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATA  196 (359)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~  196 (359)
                      +||+++++.+..+..|...+..++|+|+++.  +++ |+.|+.|++|+... +.+..+..|..+|.+++|+|++++|+++
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVS-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSE--EEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCE--EEE-EeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            9999999999999999999999999998764  555 66799999998764 6677888999999999999999999999


Q ss_pred             eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248          197 SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKN  276 (359)
Q Consensus       197 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
                      +.|+. |++||+++++.+..+... +...+..++|+|++++|++++.|+.|++||+.+++..                  
T Consensus       168 ~~d~~-i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------------  227 (312)
T 4ery_A          168 SYDGL-CRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL------------------  227 (312)
T ss_dssp             ETTSC-EEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE------------------
T ss_pred             eCCCc-EEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE------------------
Confidence            99999 999999999988877643 5578999999999999999999999999999876511                  


Q ss_pred             CCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          277 SSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                     ..+....      .....+......+++.+|++|+.||.|++|++..
T Consensus       228 ---------------~~~~~~~------~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          228 ---------------KTYTGHK------NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             ---------------EEECSSC------CSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             ---------------EEEEecC------CceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence                           0111110      0001122222346788999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.9e-35  Score=254.52  Aligned_cols=278  Identities=14%  Similarity=0.227  Sum_probs=220.2

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|  ++++|++|+ |+.|++||+.+++..  ..+. +|...|.++++  +++.++.++    .||.|++||
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~l~~--~~~~l~sg~----~dg~i~vwd  199 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQY--DERVIITGS----SDSTVRVWD  199 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEEC--CSSEEEEEE----TTSCEEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--EEEc-CCCCcEEEEEE--CCCEEEEEc----CCCeEEEEE
Confidence            46677998887  789999999 999999999887655  4444 78998887776  777777777    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceee---eeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLV---DQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +.+++.+..+. |...|.+++|+++....+ .|+.|++||+.+++..   ..+..|...+..+++  +++.  +++ |+.
T Consensus       200 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~s-~~~  274 (435)
T 1p22_A          200 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY--IVS-ASG  274 (435)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE--EEE-EET
T ss_pred             CCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCE--EEE-EeC
Confidence            99999999988 889999999986533333 8999999999877655   556677777777766  4443  555 567


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      ||.|++|+... +.+..+.+|...|.++++  +++++++|+.||. |++||+++++.+..+..  |...|.+++|  +++
T Consensus       275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~--~~~  347 (435)
T 1p22_A          275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--DNK  347 (435)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC--CSS
T ss_pred             CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe--cCC
Confidence            99999988764 677788899999999998  4689999999999 99999999999999987  7789999999  788


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                      +|++++.||.|++||+.++.....                  .               ........+..+.+.|.+++| 
T Consensus       348 ~l~sg~~dg~i~vwd~~~~~~~~~------------------~---------------~~~~~~~~~~~h~~~v~~l~~-  393 (435)
T 1p22_A          348 RIVSGAYDGKIKVWDLVAALDPRA------------------P---------------AGTLCLRTLVEHSGRVFRLQF-  393 (435)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTS------------------C---------------TTTTEEEEECCCSSCCCCEEE-
T ss_pred             EEEEEeCCCcEEEEECCCCCCccc------------------c---------------ccchheeeccCCCCCeEEEEe-
Confidence            999999999999999987652210                  0               000011224446678888888 


Q ss_pred             ccCCEEEEEecCCeEEEEEeCCC
Q 018248          317 RQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       317 ~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                       ++++|++++.||.|++|++...
T Consensus       394 -~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          394 -DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             -CSSCEEECCSSSEEEEEC----
T ss_pred             -CCCEEEEEeCCCEEEEEECCCC
Confidence             7789999999999999998763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1e-34  Score=264.89  Aligned_cols=280  Identities=17%  Similarity=0.207  Sum_probs=233.8

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCC----cceeeeecccCCCCc-eeEEEEec--cCCEEEEEecCCCCC
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPY----KPIMRRDFDRNPRGG-TQLVSMLF--RSNIICLVNSGPHQS   75 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~----~~~~~~~~~~~h~~~-v~~~~~~~--~~~~~~~~~~~~~~d   75 (359)
                      ..|...|.+++|+|+|++|++++++.|++|+++++    +..  ..+. +|... |.++++++  +++.++.++    .|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~----~d   87 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV--VQFT-GHGSSVVTTVKFSPIKGSQYLCSGD----ES   87 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE--EEEC-TTTTSCEEEEEECSSTTCCEEEEEE----TT
T ss_pred             CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccc--eEEe-cCCCceEEEEEECcCCCCCEEEEec----CC
Confidence            46889999999999999999999999999999976    444  4444 89999 99999999  889888877    78


Q ss_pred             CeEEEEECCCc--------cEEeeec-cCcceeEEEEecceeEEE---ec----CeEEEEEcccceeeeeEeccCCCcee
Q 018248           76 NKVMIWDDHEN--------RYLGELS-FRSEVKNVRLRRDRIVVV---LN----QKVYVYNFTDLKLVDQIETVVNPTGL  139 (359)
Q Consensus        76 ~~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d----~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (359)
                      +.|++||+.++        +.+..+. |...|.+++|+|++.+++   .+    +.|++||  .++.+..+..|...+..
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~  165 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINA  165 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEE
Confidence            99999999754        6666666 889999999999998887   33    5788888  67788888899999999


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccc---cccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHAS---RIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      ++|+|+++.. +++ ++.|+.|++|+... +.+..+..|..   .|.+++|+|+ +++|++++.|+. |++||+++++.+
T Consensus       166 ~~~~~~~~~~-l~~-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~  242 (615)
T 1pgu_A          166 CHLKQSRPMR-SMT-VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFL  242 (615)
T ss_dssp             EEECSSSSCE-EEE-EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEE
T ss_pred             EEECCCCCcE-EEE-EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCEe
Confidence            9999998743 444 55799999998765 66777888998   9999999999 999999999999 999999999999


Q ss_pred             EEeecC--CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecce
Q 018248          215 QEMRRG--AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPK  292 (359)
Q Consensus       215 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (359)
                      ..+...  .|...|.+++|+ ++++|++++.|+.|++||+++++..                                 .
T Consensus       243 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~---------------------------------~  288 (615)
T 1pgu_A          243 KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV---------------------------------Q  288 (615)
T ss_dssp             EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE---------------------------------E
T ss_pred             EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE---------------------------------E
Confidence            988320  277899999999 9999999999999999999876511                                 0


Q ss_pred             EEecccceeEEeec----CCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          293 YFSSKWSMAQFRLP----ENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       293 ~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .         +..+    ...+..+.|+ +++.|++++.||.|++|++..
T Consensus       289 ~---------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          289 K---------WTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             E---------EECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             E---------EcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence            0         1111    2456677775 889999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=250.33  Aligned_cols=247  Identities=13%  Similarity=0.180  Sum_probs=203.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc--CCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR--SNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~~d~~i~   79 (359)
                      ..|...|.+++|+|++++|++|+ |+.|+||+++.........+. +|...|..++|+++  ++.++.++    .|+.|+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~----~dg~v~   82 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCS----YDGKVL   82 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEE----TTSCEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEec----cCCEEE
Confidence            35899999999999999999998 999999999855555555665 89999999999877  67777777    789999


Q ss_pred             EEECCCcc--EEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccce--eeeeEeccCCCceeeeeecCC---
Q 018248           80 IWDDHENR--YLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLK--LVDQIETVVNPTGLCDVSQNA---  146 (359)
Q Consensus        80 iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~---  146 (359)
                      +||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||+.++.  ....+..+...+..++|+|..   
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999886  566666 8899999999999  77666   89999999997763  344566788889999999941   


Q ss_pred             --------CccEEEecCCCCeeEEEEecCC-----eeeEEeecccccccEEEEccC---CcEEEEEeCCCCeEEEEEcCC
Q 018248          147 --------GPMVMACPGLLKGQVRVEDYGT-----KKSKYITAHASRIASIAMTLD---GRFVATASSKGTLIRVFNTMD  210 (359)
Q Consensus       147 --------~~~~l~~~g~~d~~v~~~~~~~-----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~~i~iwd~~~  210 (359)
                              +..++++ ++.|+.|++|+...     .....+.+|...|.+++|+|+   +++|++++.||. |++||+++
T Consensus       163 ~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~  240 (379)
T 3jrp_A          163 DGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDN  240 (379)
T ss_dssp             -------CTTCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESS
T ss_pred             cccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCC
Confidence                    1233555 56799999988754     244567889999999999999   899999999999 99999988


Q ss_pred             Cc---EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          211 GS---LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       211 ~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++   ....+....+...|.+++|+|++++|++++.||.|++|++....
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            74   33334333467899999999999999999999999999998643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.2e-36  Score=293.32  Aligned_cols=278  Identities=15%  Similarity=0.225  Sum_probs=239.9

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      +...|.+++|+|+++++++|+ +|.|++|++.+++..  ..+. +|...+..++|+++++.++.++    .|+.|++||+
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~--~~~~-~h~~~v~~l~~s~dg~~l~s~~----~dg~i~vwd~ 1032 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF--SSGV-GHKKAVRHIQFTADGKTLISSS----EDSVIQVWNW 1032 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE--EECC-CCSSCCCCEEECSSSSCEEEEC----SSSBEEEEET
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee--eecc-cCCCceEEEEECCCCCEEEEEc----CCCEEEEEEC
Confidence            356799999999999999999 999999999987654  3343 7999999999999999888877    7899999999


Q ss_pred             CCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248           84 HENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      .+++......|...|.++.|+|++.+++  .|+.|++||+.+++....+..|...+..++++|++..  +++ ++.|+.|
T Consensus      1033 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~--l~s-~s~d~~v 1109 (1249)
T 3sfz_A         1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK--FSS-TSADKTA 1109 (1249)
T ss_dssp             TTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSS--CEE-ECCSSCC
T ss_pred             CCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCE--EEE-EcCCCcE
Confidence            9998887667999999999999998877  8999999999999999999999999999999999886  554 5579999


Q ss_pred             EEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee-------cCCCCcceEEEEecC
Q 018248          162 RVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR-------RGAERAEIYSLAFSS  233 (359)
Q Consensus       162 ~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~-------~~~~~~~i~~~~~s~  233 (359)
                      ++|+... ..+..+.+|...|++++|+|+|++|++++.||. |++||+.+++.+..+.       ...|.+.|++++|+|
T Consensus      1110 ~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 1188 (1249)
T 3sfz_A         1110 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1188 (1249)
T ss_dssp             CEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSSSCCCCCCCCCC-------CCSCCCEEEECT
T ss_pred             EEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceEEEeccccccccccccCceEEEEEECC
Confidence            9998764 667778899999999999999999999999999 9999999988766541       012678899999999


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      ||++|++++  |.|++||+.+++...                                          .+..+.+.+..+
T Consensus      1189 dg~~l~s~~--g~v~vwd~~~g~~~~------------------------------------------~~~~~~~~i~~~ 1224 (1249)
T 3sfz_A         1189 DSKTLVSAG--GYLKWWNVATGDSSQ------------------------------------------TFYTNGTNLKKI 1224 (1249)
T ss_dssp             TSSCEEEES--SSEEEBCSSSCBCCC------------------------------------------CCCCSSCCCCCC
T ss_pred             CCCEEEECC--CeEEEEECCCCceee------------------------------------------eeeccCCcccEE
Confidence            999999886  899999999876331                                          122234567889


Q ss_pred             eecccCCEEEEEecCCeEEEEEeC
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      +|+||+++|++++.||.+++|++.
T Consensus      1225 ~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1225 HVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             EECSSSCCEEEECTTCCEEEECCC
T ss_pred             EECCCCCEEEEecCCcEEEEEeec
Confidence            999999999999999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-34  Score=245.60  Aligned_cols=238  Identities=15%  Similarity=0.176  Sum_probs=193.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|++.++++|+ |+.|++||+.+++..  ..+. +|...|..++|+++++.++.++    .|+.|++||
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~--~~~~-~h~~~v~~v~~sp~~~~l~s~~----~d~~i~~wd  146 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY--KRFV-GHQSEVYSVAFSPDNRQILSAG----AEREIKLWN  146 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE--EEEE-CCCSCEEEEEECSSTTEEEEEE----TTSCEEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE--EEEc-CCCCcEEEEEECCCCCEEEEEc----CCCEEEEEe
Confidence            5889999999999999999999 999999999987654  3444 8999999999999999888877    789999999


Q ss_pred             CCCccEEeee---ccCcceeEEEEecce----------eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           83 DHENRYLGEL---SFRSEVKNVRLRRDR----------IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        83 ~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      +.........   .|...|.+++|+|++          .+++   .|+.|++||. ..+....+..|...+..++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCC
Confidence            8754333333   377889999999986          4555   7999999994 667777888899999999999988


Q ss_pred             CccEEEecCCCCeeEEEEecC-Ce-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE--EeecC--
Q 018248          147 GPMVMACPGLLKGQVRVEDYG-TK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ--EMRRG--  220 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~-~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~--~~~~~--  220 (359)
                      +.  |++ |+.|+.|++|+.. .. ....+ .+...|.+++|+|++++++++ .|+. |++||+.+++...  .+...  
T Consensus       226 ~~--l~s-gs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~-v~iw~~~~~~~~~~~~~~~~~~  299 (343)
T 2xzm_R          226 KY--IAT-GGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQG-VKIFNLMTQSKAPVCTIEAEPI  299 (343)
T ss_dssp             SE--EEE-EETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSC-EEEEESSSCCSCSEEECCCCSG
T ss_pred             CE--EEE-EcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCC-EEEEEeCCCCCCceEEeecCcc
Confidence            75  665 6689999999973 32 23333 355679999999999988755 5777 9999998776443  33311  


Q ss_pred             -------CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          221 -------AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       221 -------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                             .|...|.+++|+|+|++|++|+.||.|++|+++++
T Consensus       300 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                   25678999999999999999999999999999865

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-35  Score=251.95  Aligned_cols=244  Identities=18%  Similarity=0.207  Sum_probs=191.8

Q ss_pred             CCCCceEEEEEccCCCEEEEe-----------c-CCceEEEEcCCCcceeee--e--cc--cCCCCceeEEEEeccCCEE
Q 018248            4 PDPITIHHLALNQDHGCFATG-----------T-ETGFRVYLSDPYKPIMRR--D--FD--RNPRGGTQLVSMLFRSNII   65 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~-----------~-d~~i~iw~~~~~~~~~~~--~--~~--~~h~~~v~~~~~~~~~~~~   65 (359)
                      .|...|.+++++  ++.+++|           + |+.+++|++++.......  .  +.  ..+...+.+++|+|+++.+
T Consensus        71 ~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l  148 (365)
T 4h5i_A           71 DNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA  148 (365)
T ss_dssp             TTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred             CCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE
Confidence            466677777664  5566654           3 677999998765432211  1  11  1344568899999999999


Q ss_pred             EEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE--eccCCCceeee
Q 018248           66 CLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI--ETVVNPTGLCD  141 (359)
Q Consensus        66 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~  141 (359)
                      ++++++  .|++|++||+.+++.+..+.|...|.+++|+|++++++  .++.+.+|+..+++.+...  ..+...+..++
T Consensus       149 a~as~~--~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  226 (365)
T 4h5i_A          149 AIASSK--VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKIN  226 (365)
T ss_dssp             EEEESC--SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred             EEEECC--CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence            888776  58999999999999999999999999999999999988  7788889988777665433  44666788899


Q ss_pred             eecCCCccEEEecCCCCe----eEEEEecCCe-----eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          142 VSQNAGPMVMACPGLLKG----QVRVEDYGTK-----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~----~v~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                      |+|++..++.++   .++    .+++|+....     ....+.+|...|++++|+|||++||+|+.|+. |+|||+++++
T Consensus       227 fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iwd~~~~~  302 (365)
T 4h5i_A          227 FIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALVKLKDLS  302 (365)
T ss_dssp             EEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEEETTTTE
T ss_pred             EcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEEECCCCc
Confidence            999987633332   333    4555665432     23456789999999999999999999999999 9999999999


Q ss_pred             EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          213 LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       213 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++..+..+ |...|++++|||||++|++++.|++|+||++....
T Consensus       303 ~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          303 MSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             EEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            99887433 78899999999999999999999999999997543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-34  Score=248.49  Aligned_cols=244  Identities=11%  Similarity=0.152  Sum_probs=203.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|++++|++|+ |+.|++|++++++..  ..+. +|...+..+++  +++.++.++    .|+.|++||
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~--~~~~l~~~~----~dg~i~i~d  202 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RTMA-GHQARVGCLSW--NRHVLSSGS----RSGAIHHHD  202 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEE--ETTEEEEEE----TTSEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--EEec-CCCCceEEEEE--CCCEEEEEc----CCCCEEEEe
Confidence            4788999999999999999999 999999999987655  4444 78999988877  567777766    789999999


Q ss_pred             CC-CccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DH-ENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +. .+..+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..+...+..++|+|++..+++..+|+.
T Consensus       203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred             cccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence            98 456666776 899999999999998887   7899999999999999899889999999999998887544433457


Q ss_pred             CeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEE--eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          158 KGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATA--SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       158 d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      |+.|++|+.... .+..+ .+...+.+++|+|++++++++  +.||. |++||+.+++.........|...|.+++|+|+
T Consensus       283 d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          283 DKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             TCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred             CCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence            999999997654 44444 477889999999999999995  48999 99999999776655433337789999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCC
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      +++|++++.||.|++|++.+++..
T Consensus       361 g~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          361 GRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             SSEEEEECTTSEEEEEECCC----
T ss_pred             CCEEEEEeCCCcEEEEECCCCccc
Confidence            999999999999999999987743

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=276.03  Aligned_cols=293  Identities=10%  Similarity=0.102  Sum_probs=206.8

Q ss_pred             CCCCceEEEEEccC-CCEEEEec-CCceEEEEcCCCcceeeeecc---------------cCCCCceeEEEEeccCCEEE
Q 018248            4 PDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDPYKPIMRRDFD---------------RNPRGGTQLVSMLFRSNIIC   66 (359)
Q Consensus         4 ~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~~~   66 (359)
                      .|..+|.+++|+|+ +..|++|+ |+.| +||+.+++........               .+|...|..++|++++..++
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la  227 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII  227 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence            57889999999996 47888888 9999 9999976544222210               12357799999999999888


Q ss_pred             EEecCCCCCCeEEEEECCCccEEee--ec-----------------cCcceeEEEEe----cce-eEEE---ec-----C
Q 018248           67 LVNSGPHQSNKVMIWDDHENRYLGE--LS-----------------FRSEVKNVRLR----RDR-IVVV---LN-----Q  114 (359)
Q Consensus        67 ~~~~~~~~d~~i~iwd~~~~~~~~~--~~-----------------~~~~v~~~~~~----~~~-~~~~---~d-----~  114 (359)
                      .++    .|+.|++||+.+++++..  +.                 +...|.+++|+    |++ .+++   .+     .
T Consensus       228 sgs----~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~  303 (902)
T 2oaj_A          228 TIH----EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ  303 (902)
T ss_dssp             EEE----TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred             EEE----CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence            887    799999999999887653  21                 23468899995    443 3333   11     2


Q ss_pred             eEEEEEc-----------------------------------------------------------------------cc
Q 018248          115 KVYVYNF-----------------------------------------------------------------------TD  123 (359)
Q Consensus       115 ~i~i~d~-----------------------------------------------------------------------~~  123 (359)
                      .+.+|++                                                                       .+
T Consensus       304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~  383 (902)
T 2oaj_A          304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS  383 (902)
T ss_dssp             CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred             eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence            5555552                                                                       22


Q ss_pred             ceeeee-------EeccCCCce----------------------------------eeeeecCCCccEEEecCCCCeeEE
Q 018248          124 LKLVDQ-------IETVVNPTG----------------------------------LCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus       124 ~~~~~~-------~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      +.....       +..+...+.                                  .++++|++  .++++ |+.|++|+
T Consensus       384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg--~~laS-gs~DgtVr  460 (902)
T 2oaj_A          384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG--TAFIT-GHSNGSVR  460 (902)
T ss_dssp             CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE--EEEEE-EETTSEEE
T ss_pred             CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC--cEEEE-ecCCCcEE
Confidence            211100       000111111                                  22334443  34666 77899999


Q ss_pred             EEecCCeeeE-----E--ee-----cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc------------------
Q 018248          163 VEDYGTKKSK-----Y--IT-----AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS------------------  212 (359)
Q Consensus       163 ~~~~~~~~~~-----~--~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~------------------  212 (359)
                      +|+.....+.     .  +.     +|...|.+++|+||+++||+|+.||+ |+|||+.+++                  
T Consensus       461 lWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~~~~~~~  539 (902)
T 2oaj_A          461 IYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGDLEMNFR  539 (902)
T ss_dssp             EEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC---------------CC
T ss_pred             EEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCcccceeee
Confidence            9998754321     1  11     78889999999999999999999999 9999997662                  


Q ss_pred             ---------------------------EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccc
Q 018248          213 ---------------------------LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLH  265 (359)
Q Consensus       213 ---------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  265 (359)
                                                 ++..+..  |.+.|++++||||| +||+|+.|++|+|||++++...       
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~-------  609 (902)
T 2oaj_A          540 RFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII-------  609 (902)
T ss_dssp             SCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE-------
T ss_pred             eccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE-------
Confidence                                       3555655  77899999999999 9999999999999998765410       


Q ss_pred             cCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe-ecCCcEEEeeec-----ccC---CEEEEEecCCeEEEEEe
Q 018248          266 SASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR-LPENVQYLVGFG-----RQN---NTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-----~~~---~~l~~~~~dg~i~v~~~  336 (359)
                                                  ....  ...+. .|.+.|++++|+     |||   +.|++|+.||+|++|++
T Consensus       610 ----------------------------~~~~--~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          610 ----------------------------YMEN--IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             ----------------------------EEEE--GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             ----------------------------EEee--hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence                                        0000  00122 466789999999     885   89999999999999999


Q ss_pred             CCCCCCceE
Q 018248          337 DPMKGGEMH  345 (359)
Q Consensus       337 ~~~~~~~~~  345 (359)
                      .+...|++.
T Consensus       660 ~p~~~g~~~  668 (902)
T 2oaj_A          660 LPASGGKFD  668 (902)
T ss_dssp             EECGGGCEE
T ss_pred             ecCCCCcEE
Confidence            776555554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7e-34  Score=249.32  Aligned_cols=305  Identities=16%  Similarity=0.197  Sum_probs=231.0

Q ss_pred             CCCCce-EEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITI-HHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v-~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|.+.| .+  ++++|++|++|+ |+.|++||+.+++..  ..+. +|...|..+++.  ++.++.++    .|+.|++|
T Consensus       116 ~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~--~~~l~s~~----~dg~i~vw  184 (445)
T 2ovr_B          116 GHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMR--DNIIISGS----TDRTLKVW  184 (445)
T ss_dssp             CSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEE--TTEEEEEE----TTSCEEEE
T ss_pred             ccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEE--EEEc-CCCCCEEEEEec--CCEEEEEe----CCCeEEEE
Confidence            466654 54  555789999999 999999999987655  4555 899999888775  66777666    78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      |+.+++.+..+. |...|.++.++++....+ .|+.|++||+.+++.+..+..|...+.++++  +++.  +++ |+.|+
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~-~~~dg  259 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRR--VVS-GAYDF  259 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSC--EEE-EETTS
T ss_pred             ECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCE--EEE-EcCCC
Confidence            999999999988 899999999976553333 8999999999999999999999888887777  5544  554 55799


Q ss_pred             eEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248          160 QVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       160 ~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  238 (359)
                      .|++|+.. +..+..+.+|...|.+++|  ++.++++++.|+. |++||+++++.+..+..  |...+.++.+  ++++|
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~--~~~~l  332 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMEL--KDNIL  332 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEE--ETTEE
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEE--eCCEE
Confidence            99998875 4677788899999999999  8899999999999 99999999999999886  6678888887  46799


Q ss_pred             EEEcCCCcEEEEEccCCCCCCCC-------CccccCCCCCccCCCCCceeeeeEeeeecceEEecc--cceeEE-----e
Q 018248          239 AASSDKGTVHVFGLKVDSGSPGT-------SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK--WSMAQF-----R  304 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~  304 (359)
                      ++++.||.|++||+++++.....       ..+.+..+.+.........+   .+     +.|+..  .....+     .
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg---~v-----~iwd~~~~~~~~~~~~~~~~  404 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG---TV-----KLWDLKTGEFIRNLVTLESG  404 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS---EE-----EEEETTTCCEEEEEEECTTG
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCC---eE-----EEEECCCCceeeeeeccccC
Confidence            99999999999999887633211       11122222111000000000   01     122221  112222     2


Q ss_pred             ecCCcEEEeeecccCCEEEEEecCCe----EEEEEeCCC
Q 018248          305 LPENVQYLVGFGRQNNTIVIVGLDGS----YYKCEFDPM  339 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~~~l~~~~~dg~----i~v~~~~~~  339 (359)
                      .+.+.|.+++|+|++..|++|+.||.    +++|+++.+
T Consensus       405 ~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          405 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            34578999999999999999999997    999999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.3e-33  Score=262.18  Aligned_cols=241  Identities=12%  Similarity=0.144  Sum_probs=205.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..+|.+++|+|++++|++|+ |+.|++|++.+++...  .+. +|...+..++|++++..+++++    .|+.|++||
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~-~~~~~v~~~~~s~~~~~l~~~~----~dg~i~vw~  125 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--DFE-AHPDYIRSIAVHPTKPYVLSGS----DDLTVKLWN  125 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE--EEE-CCSSCEEEEEECSSSSEEEEEE----TTSEEEEEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--EEe-cCCCCEEEEEEeCCCCEEEEEc----CCCEEEEEE
Confidence            5889999999999999999999 9999999999876653  333 7899999999999999888777    789999999


Q ss_pred             CCCc-cEEeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccC-CCceeeeeecCCCccEEEecC
Q 018248           83 DHEN-RYLGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVV-NPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        83 ~~~~-~~~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      +.++ .....+. |...|.+++|+| ++..++   .|+.|++||+.+++....+..+. ..+..++|+|.++..++++ +
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~  204 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT-A  204 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE-E
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE-E
Confidence            9887 5666666 889999999999 777776   78999999998888777776654 7788999999544445666 6


Q ss_pred             CCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          156 LLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       156 ~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +.||.|++|+.. +..+..+.+|...|.+++|+|++++|++++.||. |++||+.+++.+..+..  +...+.+++|+|+
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~  281 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIATHPT  281 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEEEEEECTT
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEEEEEEccC
Confidence            679999999865 4667788899999999999999999999999999 99999999999998886  6679999999999


Q ss_pred             CC--EEEEEcCCCcEEEEEccCCC
Q 018248          235 AQ--WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       235 ~~--~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++  +++++ .++.+.+|++....
T Consensus       282 ~~~~~~~~~-~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          282 GRKNYIASG-FDNGFTVLSLGNDE  304 (814)
T ss_dssp             CGGGEEEEE-ETTEEEEEECSCCS
T ss_pred             CCceEEEEE-eCCCEEEEEcCCCC
Confidence            87  45554 46679999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-34  Score=244.82  Aligned_cols=238  Identities=11%  Similarity=0.136  Sum_probs=200.2

Q ss_pred             CCCCceEEEEEccC----CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEec-cCCEEEEEecCCCCCCe
Q 018248            4 PDPITIHHLALNQD----HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF-RSNIICLVNSGPHQSNK   77 (359)
Q Consensus         4 ~h~~~v~~~~~s~~----g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~   77 (359)
                      .|...|.+++|+|+    |++|++|+ |+.|++||+.+++..  ..+. +|...+..++|++ +++.++.++    .|+.
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~l~s~~----~dg~  139 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--KHYV-GHGNAINELKFHPRDPNLLLSVS----KDHA  139 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE--EEEE-SCCSCEEEEEECSSCTTEEEEEE----TTSC
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe--eeec-CCCCcEEEEEECCCCCCEEEEEe----CCCe
Confidence            47789999999999    67899999 999999999987655  3444 7999999999999 778887777    7899


Q ss_pred             EEEEECCCccEEeee---c-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec------------------
Q 018248           78 VMIWDDHENRYLGEL---S-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET------------------  132 (359)
Q Consensus        78 i~iwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~------------------  132 (359)
                      |++||+.+++.+..+   . |...|.+++|+|++..++   .|+.|++||+++++....+..                  
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999998887   4 889999999999998777   789999999987765544433                  


Q ss_pred             ----------cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC---------------eeeEEeecccccccEEEEc
Q 018248          133 ----------VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---------------KKSKYITAHASRIASIAMT  187 (359)
Q Consensus       133 ----------~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---------------~~~~~~~~~~~~i~~~~~s  187 (359)
                                +...+..++|+  ++  ++++ ++.|+.|++|+...               ..+..+..|...|.+++|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~~--~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--GD--LILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--TT--EEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred             ccCccccccCCcceEEEEEEc--CC--EEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence                      77888888887  33  3555 66799999988754               2366778899999999999


Q ss_pred             cC--CcEEEEEeCCCCeEEEEEcCCCc----EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          188 LD--GRFVATASSKGTLIRVFNTMDGS----LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       188 ~~--~~~l~~~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      |+  +++|++++.||. |++||+.+++    ....+..+.+...|++++|+|++++|++++.||.|++||+.+
T Consensus       295 ~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          295 MDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99  999999999999 9999999875    445676644478999999999999999999999999999863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.6e-33  Score=242.81  Aligned_cols=242  Identities=13%  Similarity=0.123  Sum_probs=201.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|++|+|+|+|++|++|+ |+.|+|||+++++..  ..+. +|...+.+++  +++..++.++    .|+.+++||
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--~~~~-~h~~~v~~~s--~~~~~l~sgs----~d~~i~~~d  215 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLS--WNSYILSSGS----RSGHIHHHD  215 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEE--EETTEEEEEE----TTSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--EEEe-CCCCceEEEe--eCCCEEEEEe----CCCceeEee
Confidence            5778899999999999999999 999999999987655  4444 7888777655  4677777666    789999999


Q ss_pred             CCCc-cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce----eeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           83 DHEN-RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK----LVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        83 ~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .... ..+..+. |...+..+.++|++..++   .|+.+++|+..+++    .+.....+...+..++|+|.+...+...
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             ecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence            8764 4455566 889999999999998888   79999999997654    3455667788899999999888766555


Q ss_pred             cCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          154 PGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      +|+.|+.|++|+...........+...+.++.|+|+++.+++++  .|+. |+|||+.+++++.++.+  |.+.|++++|
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~l~~  372 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSLTM  372 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEEEEE
T ss_pred             eecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEE
Confidence            57889999999887654444444556789999999999888765  7899 99999999999999987  7889999999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      +|||++|++|+.|++|+|||+....+
T Consensus       373 spdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          373 SPDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             CTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             cCCCCEEEEEecCCeEEEEECCCCCc
Confidence            99999999999999999999987553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=8.1e-34  Score=245.63  Aligned_cols=286  Identities=12%  Similarity=0.109  Sum_probs=222.4

Q ss_pred             ceEEEEEccCCCEEEE-ec-CCceEEEEcCCCcce--eeeecccCCCCceeEEEEec-cCCEEEEEecCCCCCCeEEEEE
Q 018248            8 TIHHLALNQDHGCFAT-GT-ETGFRVYLSDPYKPI--MRRDFDRNPRGGTQLVSMLF-RSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~-~~-d~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ....++++|+...+++ ++ ||.|+||+++.....  ....+. +|...|..++|++ +++.++.++    .|+.|++||
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s----~dg~v~vw~  110 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGS----EDCTVMVWE  110 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEE----TTSEEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEe----CCCeEEEEE
Confidence            3446888988766654 56 999999999654221  122343 8999999999999 788888777    789999999


Q ss_pred             CCCc-------cEEeeec-cCcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeE--eccCCCceeeeeecCCCc
Q 018248           83 DHEN-------RYLGELS-FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQI--ETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        83 ~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  148 (359)
                      +.++       +.+..+. |...|.+++|+|++ .+++   .|+.|++||+.+++.+..+  ..|...+..++|+|+++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            9887       5566776 89999999999998 4555   7999999999999999998  778889999999998876


Q ss_pred             cEEEecCCCCeeEEEEecCC-eeeEEe-eccccc-ccEEEEccCCcEEEEE---eCCCCeEEEEEcCCCcE-EEEeecCC
Q 018248          149 MVMACPGLLKGQVRVEDYGT-KKSKYI-TAHASR-IASIAMTLDGRFVATA---SSKGTLIRVFNTMDGSL-LQEMRRGA  221 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~-~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~dg~~i~iwd~~~~~~-~~~~~~~~  221 (359)
                        +++ ++.|+.|++|+.+. +.+..+ ..|.+. +.+++|+|++++|++|   +.|+. |++||+++++. +..... .
T Consensus       191 --l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~-~  265 (402)
T 2aq5_A          191 --ICT-SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQEL-D  265 (402)
T ss_dssp             --EEE-EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEEC-C
T ss_pred             --EEE-EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEec-c
Confidence              555 55799999998764 566666 678765 8999999999999999   78999 99999988764 323322 2


Q ss_pred             CCcceEEEEecCCCCEEE-EEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccce
Q 018248          222 ERAEIYSLAFSSNAQWLA-ASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSM  300 (359)
Q Consensus       222 ~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (359)
                      +...+.+++|+|++++|+ +++.||.|++|++.++++.                        +.        .+.     
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~------------------------~~--------~l~-----  308 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF------------------------LH--------YLS-----  308 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC------------------------EE--------EEE-----
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc------------------------eE--------eec-----
Confidence            557899999999999986 4557999999999987621                        00        000     


Q ss_pred             eEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEe
Q 018248          301 AQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQL  347 (359)
Q Consensus       301 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~  347 (359)
                       .+. +.+.+.+++|+|++.+++  +.++.+++|++..   +.+...
T Consensus       309 -~~~-~~~~v~~~~~sp~~~~~~--s~~~~~~~~~l~~---~~~~~i  348 (402)
T 2aq5_A          309 -MFS-SKESQRGMGYMPKRGLEV--NKCEIARFYKLHE---RKCEPI  348 (402)
T ss_dssp             -EEC-CSSCCSEEEECCGGGSCG--GGTEEEEEEEEET---TEEEEE
T ss_pred             -ccc-cCCcccceEEecccccce--ecceeEEEEEcCC---CcEEEE
Confidence             011 346789999999998876  4677999999986   445443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.8e-32  Score=241.74  Aligned_cols=272  Identities=13%  Similarity=0.183  Sum_probs=217.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC--CEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS--NIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~d~~i~i   80 (359)
                      .|...|.+++|+|++ +|++|+ |+.|++||+++++..  ..+. +|...+.++++.+.+  +.++.++    .|+.|++
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~~~l~s~s----~d~~i~v  231 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFE-GHNSTVRCLDIVEYKNIKYIVTGS----RDNTLHV  231 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEEESSSCEEEEEEE----TTSCEEE
T ss_pred             CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--EEEC-CCCCccEEEEEecCCCCCEEEEEc----CCCcEEE
Confidence            589999999999998 888888 999999999987654  4454 799999999999644  4455554    6899999


Q ss_pred             EECCCccE-----------------------Eeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEecc
Q 018248           81 WDDHENRY-----------------------LGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV  133 (359)
Q Consensus        81 wd~~~~~~-----------------------~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~  133 (359)
                      ||+.+++.                       +..+. |...+.++  ++++.+++   .|+.|++||+.+++.+..+..|
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  309 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  309 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            99987653                       22333 66777776  45555555   7999999999999999999999


Q ss_pred             CCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       134 ~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                      ...+..++++|+++.  +++ |+.|+.|++|+.. ++.+..+.+|...|.+++|+  +++|++++.||. |++||+.+++
T Consensus       310 ~~~v~~~~~~~~~~~--l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~~  383 (464)
T 3v7d_B          310 TDRIYSTIYDHERKR--CIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYS  383 (464)
T ss_dssp             SSCEEEEEEETTTTE--EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCC
T ss_pred             CCCEEEEEEcCCCCE--EEE-EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCCc
Confidence            999999999998875  555 6689999999874 67788899999999999997  579999999999 9999999988


Q ss_pred             EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecce
Q 018248          213 LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPK  292 (359)
Q Consensus       213 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (359)
                      ......   +...+..++|+|++++|++++ ||.|++||+++++...                                .
T Consensus       384 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~--------------------------------~  427 (464)
T 3v7d_B          384 RKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH--------------------------------A  427 (464)
T ss_dssp             EEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE--------------------------------S
T ss_pred             eeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe--------------------------------h
Confidence            777665   456788899999999999988 8999999999987210                                0


Q ss_pred             EEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          293 YFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       293 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      .         +..+.+.|..++|+ +...+++++.||.+++|.++
T Consensus       428 ~---------~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          428 N---------ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             C---------TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             h---------hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence            0         11134678899997 33566666778888888765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=240.78  Aligned_cols=246  Identities=11%  Similarity=0.152  Sum_probs=202.6

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC--CccEEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH--ENRYLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVY  119 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~  119 (359)
                      +|...|.+++|+++++.++.++    .|+.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .|+.|++|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             CCcccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            8999999999999999888877    78999999987  567777777 8999999999876  77776   78999999


Q ss_pred             Ecccce--eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeecccccccEEEEcc------
Q 018248          120 NFTDLK--LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASRIASIAMTL------  188 (359)
Q Consensus       120 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~i~~~~~s~------  188 (359)
                      |+.+++  .+..+..+...+..++|+|+....++++ ++.|+.|++|+....   ....+..|...|.+++|+|      
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE-ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            998886  6777777888999999999832223555 557999999988764   4456778999999999999      


Q ss_pred             -------CCcEEEEEeCCCCeEEEEEcCCCc----EEEEeecCCCCcceEEEEecCC---CCEEEEEcCCCcEEEEEccC
Q 018248          189 -------DGRFVATASSKGTLIRVFNTMDGS----LLQEMRRGAERAEIYSLAFSSN---AQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       189 -------~~~~l~~~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iw~~~~  254 (359)
                             ++.+|++++.|+. |++||++++.    ....+..  |...|.+++|+|+   +++|++++.||.|++||+.+
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                   6999999999999 9999998765    3345554  7789999999999   89999999999999999998


Q ss_pred             CCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEE
Q 018248          255 DSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKC  334 (359)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  334 (359)
                      +....                              .....       ....+...+..++|+|++++|++++.||.|++|
T Consensus       241 ~~~~~------------------------------~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  283 (379)
T 3jrp_A          241 EQGPW------------------------------KKTLL-------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  283 (379)
T ss_dssp             TTSCC------------------------------EEEES-------SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred             CCccc------------------------------eeeee-------ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            65220                              00000       011244678999999999999999999999999


Q ss_pred             EeCC
Q 018248          335 EFDP  338 (359)
Q Consensus       335 ~~~~  338 (359)
                      +++.
T Consensus       284 ~~~~  287 (379)
T 3jrp_A          284 KENL  287 (379)
T ss_dssp             EEEE
T ss_pred             eCCC
Confidence            9984

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-33  Score=244.62  Aligned_cols=293  Identities=9%  Similarity=0.073  Sum_probs=222.7

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCc---ceeeeecc------------------------------------
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYK---PIMRRDFD------------------------------------   46 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~---~~~~~~~~------------------------------------   46 (359)
                      ..++.+++|+|||++|+++.++.|++||+.+++   ........                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468899999999998887779999999998876   22111100                                    


Q ss_pred             ---------------cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC--CccEEeeec---cCcceeEEEEecc
Q 018248           47 ---------------RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH--ENRYLGELS---FRSEVKNVRLRRD  106 (359)
Q Consensus        47 ---------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~---~~~~v~~~~~~~~  106 (359)
                                     ++|...|.+++|+++++.++++++   .|+.|++||+.  +++.+..+.   +...|.+++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD---SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEG---GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC---CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                           134457999999999998644333   58999999999  888887774   6788999999999


Q ss_pred             eeEEE---ecCeEEEEEcccceeee----eEeccCCCceeeeeecC-CCccEEEecCCCCeeEEEEecCC-eeeEE-eec
Q 018248          107 RIVVV---LNQKVYVYNFTDLKLVD----QIETVVNPTGLCDVSQN-AGPMVMACPGLLKGQVRVEDYGT-KKSKY-ITA  176 (359)
Q Consensus       107 ~~~~~---~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~d~~v~~~~~~~-~~~~~-~~~  176 (359)
                      +.+++   .++.|++|++.+++...    .+..|...+..++|+|+ ....++++ |+.|+.|++|+... ..+.. +.+
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCCceeeeeecC
Confidence            98877   68999999998776554    67788899999999998 11233555 56799999988764 44555 568


Q ss_pred             ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC-----------------------CCCcceEEEEecC
Q 018248          177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG-----------------------AERAEIYSLAFSS  233 (359)
Q Consensus       177 ~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~i~~~~~s~  233 (359)
                      |...|.+++|+ ++++|++++.|+. |++||+++++.+..+..+                       .....|.+++|+|
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            99999999999 9999999999999 999999999988887632                       1235789999999


Q ss_pred             CCCEEEEEc-CCCcEEEEEc--cCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248          234 NAQWLAASS-DKGTVHVFGL--KVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ  310 (359)
Q Consensus       234 ~~~~l~~~~-~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (359)
                      ++++|++++ .++.|+||++  ..+..                         +..              ...+..+ +.+
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~-------------------------l~~--------------~~~~~~~-~~v  357 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGD-------------------------LAL--------------KQIITFP-YNV  357 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTC-------------------------EEE--------------EEEEECS-SCE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCc-------------------------eee--------------ccEeccC-Cce
Confidence            999999998 8999999999  33321                         000              1113334 678


Q ss_pred             EEeeecccCCEEEEEec------CCeEEEEEeCCCCCCceE
Q 018248          311 YLVGFGRQNNTIVIVGL------DGSYYKCEFDPMKGGEMH  345 (359)
Q Consensus       311 ~~~~~s~~~~~l~~~~~------dg~i~v~~~~~~~~~~~~  345 (359)
                      .+++|+|++.++++++.      +..|.+|.++.+. ++..
T Consensus       358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~-~~~~  397 (450)
T 2vdu_B          358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE-NSFV  397 (450)
T ss_dssp             EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT-TEEE
T ss_pred             EEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC-CeEE
Confidence            99999996433443333      4568999998754 3443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.7e-33  Score=243.20  Aligned_cols=240  Identities=13%  Similarity=0.170  Sum_probs=202.4

Q ss_pred             CCCCceEEEEEccC----C---CEEEEec-CCceEEEEcCCCcc---eeeeecccCC-----CCceeEEEEe----ccCC
Q 018248            4 PDPITIHHLALNQD----H---GCFATGT-ETGFRVYLSDPYKP---IMRRDFDRNP-----RGGTQLVSML----FRSN   63 (359)
Q Consensus         4 ~h~~~v~~~~~s~~----g---~~l~~~~-d~~i~iw~~~~~~~---~~~~~~~~~h-----~~~v~~~~~~----~~~~   63 (359)
                      .|..+|.+++|+|+    +   ++|++++ |+.|++|++.+++.   .....+. +|     ...+..++++    ++++
T Consensus        60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~  138 (397)
T 1sq9_A           60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLS  138 (397)
T ss_dssp             CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----C
T ss_pred             cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCc
Confidence            58899999999999    9   9999999 99999999987654   0023333 56     5889999999    8888


Q ss_pred             E-EEEEecCCCCCCeEEEEECCC------ccEEe-----ee-------c-cCcceeEEEEecceeEEE---ecCeEEEEE
Q 018248           64 I-ICLVNSGPHQSNKVMIWDDHE------NRYLG-----EL-------S-FRSEVKNVRLRRDRIVVV---LNQKVYVYN  120 (359)
Q Consensus        64 ~-~~~~~~~~~~d~~i~iwd~~~------~~~~~-----~~-------~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d  120 (359)
                      . ++.++    .|+.|++||+.+      ++.+.     .+       . |...|.+++|+|++ .++   .|+.|++||
T Consensus       139 ~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          139 HRLVATD----VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             EEEEEEE----TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             eEEEEEe----CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            8 77766    689999999988      66555     55       2 68899999999999 666   789999999


Q ss_pred             cccceeeeeEec---c---CCCceeeeeecCCCccEEEecCCCC---eeEEEEecC-CeeeEEeec-------------c
Q 018248          121 FTDLKLVDQIET---V---VNPTGLCDVSQNAGPMVMACPGLLK---GQVRVEDYG-TKKSKYITA-------------H  177 (359)
Q Consensus       121 ~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~g~~d---~~v~~~~~~-~~~~~~~~~-------------~  177 (359)
                      +++++.+..+..   |   ...+..++|+|++..  +++ ++.|   +.|++|+.. .+.+..+..             |
T Consensus       214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~--l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL--LAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             TTTTEEEEEEECCC---CCCCCEEEEEECSSTTE--EEE-EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             CCCCceeEEEeccccccccCCccceEEECCCCCE--EEE-EecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            999999999988   7   888999999998764  554 5568   999999875 466777887             9


Q ss_pred             cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee------cCCC---------------CcceEEEEecCCC-
Q 018248          178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR------RGAE---------------RAEIYSLAFSSNA-  235 (359)
Q Consensus       178 ~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~------~~~~---------------~~~i~~~~~s~~~-  235 (359)
                      ...|.+++|+|++++|++++.|+. |++||+++++.+..+.      .  |               ...|++++|+|++ 
T Consensus       291 ~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          291 SSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIE--IEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCS--SGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCccc--chhhhhccccccccccCCceeEEEeccccc
Confidence            999999999999999999999999 9999999999999988      4  4               7899999999998 


Q ss_pred             ---------CEEEEEcCCCcEEEEEccCC
Q 018248          236 ---------QWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       236 ---------~~l~~~~~dg~i~iw~~~~~  255 (359)
                               ++|++++.||.|++|+++++
T Consensus       368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          368 RSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccccccccceEEEecCCCcEEEEEcCCC
Confidence                     79999999999999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=268.52  Aligned_cols=246  Identities=13%  Similarity=0.179  Sum_probs=202.5

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc--CCEEEEEecCCCCCCeEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR--SNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~~d~~i~   79 (359)
                      ..|.++|++++|+|+|++|++|+ ||.|+||++.+........+. +|.+.|..++|+++  ++.++.++    .||.|+
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s----~Dg~I~   80 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCS----YDGKVL   80 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEE----TTSCEE
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEe----CCCeEE
Confidence            47999999999999999999999 999999999865555555665 89999999999987  77777777    789999


Q ss_pred             EEECCCcc--EEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccce--eeeeEeccCCCceeeeeecC----
Q 018248           80 IWDDHENR--YLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLK--LVDQIETVVNPTGLCDVSQN----  145 (359)
Q Consensus        80 iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~----  145 (359)
                      +||+.+++  .+..+. |...|.+++|+|+  +..++   .||.|++||+.++.  ....+..+...+..++|+|.    
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999886  555555 8899999999998  77776   88999999997763  34455678888999999984    


Q ss_pred             ---------CCccEEEecCCCCeeEEEEecCC-----eeeEEeecccccccEEEEccC---CcEEEEEeCCCCeEEEEEc
Q 018248          146 ---------AGPMVMACPGLLKGQVRVEDYGT-----KKSKYITAHASRIASIAMTLD---GRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       146 ---------~~~~~l~~~g~~d~~v~~~~~~~-----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~~i~iwd~  208 (359)
                               +..  +++ |+.||.|++|+...     .....+.+|...|.+++|+|+   +++|++++.||. |++||+
T Consensus       161 ~~~~~~~~d~~~--l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~  236 (753)
T 3jro_A          161 DGEHNGTKESRK--FVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQ  236 (753)
T ss_dssp             ------CGGGCC--EEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEE
T ss_pred             ccccccCCCCCE--EEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecC
Confidence                     443  555 56799999988754     445677889999999999999   899999999999 999999


Q ss_pred             CCCcEE---EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          209 MDGSLL---QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       209 ~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ++++..   .......|...|++++|+|+|++|++++.||.|++|++.....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence            886421   1122223677999999999999999999999999999997553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=248.49  Aligned_cols=257  Identities=12%  Similarity=0.033  Sum_probs=204.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +-...|.+++|+|||+++|+++ |++|+  +....+     .+. +|...+..++++|++      .     ++.+.+|+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----~l~-gh~~~v~~V~FsPdg------~-----~~~~~~~~   73 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----DIN-CNSKNLFHVKEFPLE------F-----ENKLDFEL   73 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----CCS-SBGGGTEEEEEECCC------C-----CCTTTTSC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc-----eec-CCCccEEEEEECCCC------C-----cceEEEEe
Confidence            4567899999999999999999 99999  655432     233 899999999998877      1     46666666


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC-----CceeeeeecCCCccEEEec
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN-----PTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~  154 (359)
                      .. +.....+.+...|.+++|+|+|..++   .||.|++||.+.  ++..+. |..     .+..++|+|+++.  |++ 
T Consensus        74 ~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~--LAs-  146 (588)
T 2j04_A           74 AQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESS--IVV-  146 (588)
T ss_dssp             CC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSC--EEE-
T ss_pred             CC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCE--EEE-
Confidence            33 33344445688899999999999888   899999999543  555555 554     4889999999886  665 


Q ss_pred             CCCCeeEEEEecCCee--------eEEe----ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE---EEEeec
Q 018248          155 GLLKGQVRVEDYGTKK--------SKYI----TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL---LQEMRR  219 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~--------~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~---~~~~~~  219 (359)
                      |+.||+|++|+...+.        +..+    .+|...|.+++|+|||  +++++.|+. |++||+.+++.   ..++..
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeecc
Confidence            5689999999988763        4665    5677899999999999  788899999 99999988773   345642


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccc
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWS  299 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (359)
                      + |...|.+++|+  |+.|++++ +++|++||+.++...                                         
T Consensus       224 ~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~-----------------------------------------  258 (588)
T 2j04_A          224 A-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS-----------------------------------------  258 (588)
T ss_dssp             C-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE-----------------------------------------
T ss_pred             c-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE-----------------------------------------
Confidence            2 66899999999  68999887 699999999986510                                         


Q ss_pred             eeEEe-ecCCcEEEeee--cccCCEEEEEecCCeEEEEEeC
Q 018248          300 MAQFR-LPENVQYLVGF--GRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       300 ~~~~~-~~~~~v~~~~~--s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                        .+. .|.+.+..++|  +||+..|+++++||+ ++|.++
T Consensus       259 --~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          259 --SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             --EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             --EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence              011 35678899999  999999999999999 999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.1e-33  Score=234.04  Aligned_cols=282  Identities=10%  Similarity=0.068  Sum_probs=201.2

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec-cCcceeEEEEec--ceeEEE---ecCeEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS-FRSEVKNVRLRR--DRIVVV---LNQKVY  117 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~~~---~d~~i~  117 (359)
                      +|.+.|.+++|+++++.++.++    .|+.|++||+.++    +.+..+. |...|.+++|+|  ++.+++   .|+.|+
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCS----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccccceeEEEEcCCCCEEEEee----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            8999999999999999888877    7899999999876    4555666 899999999999  577666   799999


Q ss_pred             EEEcccc---------eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEe-------------
Q 018248          118 VYNFTDL---------KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYI-------------  174 (359)
Q Consensus       118 i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~-------------  174 (359)
                      +||+.++         +.+..+..+...+..++|+|+....++++ ++.|+.|++|+... +.+..+             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            9999776         56777888899999999999832233555 55799999998654 221111             


Q ss_pred             ecccccccEEEEccC---CcEEEEEeCCCCeEEEEEcCCCcE--EEEeecCCCCcceEEEEecCCC----CEEEEEcCCC
Q 018248          175 TAHASRIASIAMTLD---GRFVATASSKGTLIRVFNTMDGSL--LQEMRRGAERAEIYSLAFSSNA----QWLAASSDKG  245 (359)
Q Consensus       175 ~~~~~~i~~~~~s~~---~~~l~~~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg  245 (359)
                      ..|...+.+++|+|+   +.++++++.++. +.+|+...++.  +..+..  |...|++++|+|++    ++|++++.||
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPG--HKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCC--CCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCC--CCcceeEEEECCCCCCcceEEEEEcCCC
Confidence            257788999999997   899999999998 88888777765  445554  78899999999998    8999999999


Q ss_pred             cEEEEEccCCCCCCCCCc-ccc---CCCCCcc---CCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeeccc
Q 018248          246 TVHVFGLKVDSGSPGTSK-LHS---ASEPNLS---SKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQ  318 (359)
Q Consensus       246 ~i~iw~~~~~~~~~~~~~-~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  318 (359)
                      .|++||++.+........ ...   ....+..   ..+............+..   ........++.|.+.|.+++|+|+
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN---LQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCS---EEEEEEEEECTTSSCEEEEEECSS
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc---ccccEEEEEecccccEEEEEEcCC
Confidence            999999998653321100 000   0000000   000000000000000000   001122335556789999999999


Q ss_pred             CCEEEEEecCCeEEEEEeCCCC
Q 018248          319 NNTIVIVGLDGSYYKCEFDPMK  340 (359)
Q Consensus       319 ~~~l~~~~~dg~i~v~~~~~~~  340 (359)
                      +++|++++.||.|++|++...+
T Consensus       318 ~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          318 GTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             SCCEEEEETTSCEEEEEECTTS
T ss_pred             CCEEEEecCCCcEEEEecCcCc
Confidence            9999999999999999998743

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5e-32  Score=226.84  Aligned_cols=242  Identities=12%  Similarity=0.120  Sum_probs=202.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|.+++|+|++++|++|+ |+.|++|++++++..  ..+. +|...+..  +.+.+..++..+    .++.+++|
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~--~~~~-~h~~~~~~--~~~~~~~l~s~~----~~~~~~~~  134 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGS--LSWNSYILSSGS----RSGHIHHH  134 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEE--EEEETTEEEEEE----TTSEEEEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE--EEec-CccceEEE--eecCCCEEEEEe----cCCceEee
Confidence            35788899999999999999999 999999999987655  3444 67776654  555677777666    68999999


Q ss_pred             ECCCc-cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccccee----eeeEeccCCCceeeeeecCCCccEEE
Q 018248           82 DDHEN-RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL----VDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        82 d~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      +.... ..+..+. |...+..+.+++++.+++   .|+.|++||+++++.    ......+...+..+++++.+...+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  214 (318)
T 4ggc_A          135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT  214 (318)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred             ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence            98776 4444555 889999999999998887   899999999977653    33344566778888999988876666


Q ss_pred             ecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          153 CPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                      .+++.++.|++|+...........+...+..+.|+|++..+++++  .|+. |++||+++++++.++.+  |.+.|++++
T Consensus       215 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~l~  291 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSLT  291 (318)
T ss_dssp             EECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             EecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE-EEEEECCCCcEEEEEcC--CCCCEEEEE
Confidence            568889999999998877777777888999999999999887765  7899 99999999999999987  788999999


Q ss_pred             ecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          231 FSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       231 ~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |+|||++|++++.||+|+|||+....
T Consensus       292 ~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          292 MSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99999999999999999999997654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-32  Score=253.87  Aligned_cols=238  Identities=17%  Similarity=0.237  Sum_probs=195.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|+|++|++|+ |+.|+|||+.++...  ..+. +|...|..++++++++.++.++    .|++|++||
T Consensus       428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~s----~D~~i~iwd  500 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--RRFV-GHTKDVLSVAFSLDNRQIVSAS----RDRTIKLWN  500 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEECTTSSCEEEEE----TTSCEEEEC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce--eEEe-CCCCCEEEEEEeCCCCEEEEEe----CCCEEEEEE
Confidence            5889999999999999999999 999999999876554  4444 8999999999999999988887    789999999


Q ss_pred             CCCccEEeee----ccCcceeEEEEecce--eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           83 DHENRYLGEL----SFRSEVKNVRLRRDR--IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        83 ~~~~~~~~~~----~~~~~v~~~~~~~~~--~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      ..........    .|...|.+++|+|++  ..++   .|+.|++||+++++....+..|...+..++++|+++.  +++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~--l~s  578 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL--CAS  578 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEE
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE--EEE
Confidence            7655433322    277889999999986  3444   7999999999999999999999999999999998864  665


Q ss_pred             cCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-----------
Q 018248          154 PGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-----------  221 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-----------  221 (359)
                       |+.|+.|++|+... +.+..+ .+...+.+++|+|++.+|++++ ++. |++||+++++.+..+..+.           
T Consensus       579 -g~~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  654 (694)
T 3dm0_A          579 -GGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSG  654 (694)
T ss_dssp             -EETTSBCEEEETTTTEEEECC-BCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEECCCCC----------
T ss_pred             -EeCCCeEEEEECCCCceEEEe-cCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhccccccccccccccc
Confidence             66899999999865 444444 3567899999999999887765 556 9999999999887775321           


Q ss_pred             ------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          222 ------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       222 ------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                            +...+++++|+|+|++|++|+.||.|+||++..
T Consensus       655 ~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             ------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                  111378999999999999999999999999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-31  Score=230.63  Aligned_cols=256  Identities=10%  Similarity=0.115  Sum_probs=201.4

Q ss_pred             eecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEECCCccEEeeec---cCcceeEEEEec-ceeEEE---ecC
Q 018248           43 RDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDDHENRYLGELS---FRSEVKNVRLRR-DRIVVV---LNQ  114 (359)
Q Consensus        43 ~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~---~d~  114 (359)
                      ..+. +|...|.+++|++++ +.++.++    .|+.|++||+.+++....+.   |...|.+++|+| ++.+++   .|+
T Consensus        67 ~~~~-~h~~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           67 RTAS-PFDRRVTSLEWHPTHPTTVAVGS----KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EEEC-CCSSCEEEEEECSSCTTEEEEEE----BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             Eecc-CCCCCEEEEEECCCCCCEEEEEc----CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3444 899999999999998 7777777    68999999999888777664   889999999999 667776   799


Q ss_pred             eEEEEEcccceeeeeEeccC---CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCc
Q 018248          115 KVYVYNFTDLKLVDQIETVV---NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGR  191 (359)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  191 (359)
                      .|++||+.+ +.+..+..+.   ..+..++|+|+++.  +++ |+.|+.|++|+.+++.+..+..|...|.+++|+|+++
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQM--LAT-GDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTE--EEE-EETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCT
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCE--EEE-ECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCC
Confidence            999999975 4555554433   67889999998874  555 6679999999999999999999999999999999999


Q ss_pred             -EEEEEeCCCCeEEEEEcCC----CcEEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCCCccc
Q 018248          192 -FVATASSKGTLIRVFNTMD----GSLLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLH  265 (359)
Q Consensus       192 -~l~~~~~dg~~i~iwd~~~----~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  265 (359)
                       +|++++.|+. |++||+++    +..+..+.   |...|.+++|+| ++++|++++.|+.|++||+++++.........
T Consensus       218 ~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          218 WLMATSSVDAT-VKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             TEEEEEETTSE-EEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             CEEEEEeCCCE-EEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence             9999999999 99999998    66776663   778999999999 99999999999999999999876431000000


Q ss_pred             cCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          266 SASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                               .........+...-.|.+.+..++|+|++++  +++.||.|++|++..
T Consensus       294 -------------------------~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~  339 (383)
T 3ei3_B          294 -------------------------HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS  339 (383)
T ss_dssp             -------------------------BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred             -------------------------ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence                                     0000000000001123356677899999888  888999999999865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.4e-31  Score=233.98  Aligned_cols=279  Identities=12%  Similarity=0.097  Sum_probs=219.5

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeee---ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRR---DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ...+.+++|+|++.++++++ ++.|++||+++++.....   .+. +|...+..+++.+++..++..+    .|+.|++|
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~----~d~~v~~~  196 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQM----QANAVHVF  196 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEG----GGTEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEEC----CCCEEEEE
Confidence            34567899999777778887 889999999987655322   222 7888999999987776666555    57999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      |+.+++.+..+. +...+.+++|+|++..++    .++.|++||+.+++.+..+..+ ..+..++++|+++.++++..+.
T Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred             ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence            999999988887 788999999999987664    5799999999999888777654 3467889999887644333111


Q ss_pred             -----CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEE-EEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248          157 -----LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFV-ATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA  230 (359)
Q Consensus       157 -----~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  230 (359)
                           .|+.|++|+...........|...+.+++|+|+++.+ ++++.++. |++||+.+++.+..+.   +...+.+++
T Consensus       276 ~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~~~  351 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNTIA  351 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEEEE
T ss_pred             CccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCeEE
Confidence                 4889999998765555555667789999999999755 66688998 9999999999888876   456799999


Q ss_pred             ecCCCCEEEEEcC---------------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248          231 FSSNAQWLAASSD---------------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS  295 (359)
Q Consensus       231 ~s~~~~~l~~~~~---------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (359)
                      |+|+|++|++++.               ||.|++||+.+++..                                 ..  
T Consensus       352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~---------------------------------~~--  396 (433)
T 3bws_A          352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK---------------------------------EF--  396 (433)
T ss_dssp             ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE---------------------------------EE--
T ss_pred             EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE---------------------------------EE--
Confidence            9999998888876               579999999876511                                 00  


Q ss_pred             cccceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeC
Q 018248          296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFD  337 (359)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~  337 (359)
                             +.. ...+..++|+|++++|++++. ||.|++|+++
T Consensus       397 -------~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          397 -------WEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             -------EEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             -------ecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                   111 246789999999999998876 9999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.4e-32  Score=238.30  Aligned_cols=293  Identities=12%  Similarity=0.083  Sum_probs=218.3

Q ss_pred             CceEEEEEccCC----------CEEEEec-C----CceEEEEcC--------------------------CCcceeeeec
Q 018248            7 ITIHHLALNQDH----------GCFATGT-E----TGFRVYLSD--------------------------PYKPIMRRDF   45 (359)
Q Consensus         7 ~~v~~~~~s~~g----------~~l~~~~-d----~~i~iw~~~--------------------------~~~~~~~~~~   45 (359)
                      -+..++.|.|+.          .++++|+ .    +.|.+++++                          +++......+
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            356788898875          4678876 2    347777543                          0111112223


Q ss_pred             ccCCCCceeEEEEecc-CCEEEEEecCCCCCCeEEEEECCC----------ccEEeeec-cCcceeEEEEeccee-EEE-
Q 018248           46 DRNPRGGTQLVSMLFR-SNIICLVNSGPHQSNKVMIWDDHE----------NRYLGELS-FRSEVKNVRLRRDRI-VVV-  111 (359)
Q Consensus        46 ~~~h~~~v~~~~~~~~-~~~~~~~~~~~~~d~~i~iwd~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~~~-  111 (359)
                        +|.+.|..++++++ ++.++.++    .+|.|++||+.+          .+.+..+. |...|.+++|+|++. +++ 
T Consensus       126 --~h~~~v~~l~~~p~~~~~lat~~----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          126 --NHEGEVNRARYMPQNACVIATKT----PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             --EESSCCSEEEEETTEEEEEEEEC----SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             --cCCCcEEEEEECCCCCcEEEEEC----CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence              68999999999986 44555554    689999999876          56666666 889999999999986 555 


Q ss_pred             --ecCeEEEEEccccee-------eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC----eeeEEeeccc
Q 018248          112 --LNQKVYVYNFTDLKL-------VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT----KKSKYITAHA  178 (359)
Q Consensus       112 --~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~----~~~~~~~~~~  178 (359)
                        .||.|++||+..+..       ...+..|...+..++|+|++... +++ ++.|+.|++|+.+.    .....+..|.
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~-l~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL-FGS-VADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTE-EEE-EETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCE-EEE-EeCCCeEEEEECCCCCCCcceeEeecCC
Confidence              799999999976322       34566788889999999966543 444 55799999999875    3667778999


Q ss_pred             ccccEEEEccCCc-EEEEEeCCCCeEEEEEcCC-CcEEEEeecCCCCcceEEEEecCCCC-EEEEEcCCCcEEEEEccCC
Q 018248          179 SRIASIAMTLDGR-FVATASSKGTLIRVFNTMD-GSLLQEMRRGAERAEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       179 ~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~  255 (359)
                      ..|++++|+|+++ +|++|+.||. |++||+++ ...+..+..  |...|.+++|+|+++ +|++++.|+.|+|||+...
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            9999999999987 7899999999 99999998 566777776  678999999999985 7999999999999999885


Q ss_pred             CCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEecCCeEEEE
Q 018248          256 SGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVGLDGSYYKC  334 (359)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~  334 (359)
                      .........              ...        .      ......+..+.+.|..++|+|+++ .|++++.||.|++|
T Consensus       355 ~~~~~~~~~--------------~~~--------~------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          355 GEEQSTEDA--------------EDG--------P------PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             TCCCCHHHH--------------HHC--------C------TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             ccccCcccc--------------ccC--------C------cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence            422100000              000        0      001111234567899999999998 89999999999999


Q ss_pred             EeCC
Q 018248          335 EFDP  338 (359)
Q Consensus       335 ~~~~  338 (359)
                      +++.
T Consensus       407 ~~~~  410 (430)
T 2xyi_A          407 QMAE  410 (430)
T ss_dssp             EECH
T ss_pred             Eccc
Confidence            9864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.6e-34  Score=243.40  Aligned_cols=239  Identities=13%  Similarity=0.086  Sum_probs=189.7

Q ss_pred             CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc--cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcc
Q 018248           49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN--RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFT  122 (359)
Q Consensus        49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~  122 (359)
                      |.+.|.+++++++++.++.++    .|+.|++||+.++  +.+..+. |...|.+++|+|++.+++   .|+.|++||+.
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTT----ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCC----SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             CCCcEEEEEECCCCCEEEEec----CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            467899999999998877666    6899999999988  6777777 899999999999998777   78999999998


Q ss_pred             cce---eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee----eEEeec-ccccccEEEEccCCcEEE
Q 018248          123 DLK---LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----SKYITA-HASRIASIAMTLDGRFVA  194 (359)
Q Consensus       123 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~----~~~~~~-~~~~i~~~~~s~~~~~l~  194 (359)
                      +++   ....+..|...+..++|+|+++.  +++ ++.|+.|++|+.+...    ...+.. |...|.+++|+|++++|+
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK--FAV-GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSC--CEE-EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCE--EEE-EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            876   56667778889999999998876  444 5579999999887653    677777 999999999999999999


Q ss_pred             EEeCCCCeEEEEEcC------------------CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          195 TASSKGTLIRVFNTM------------------DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       195 ~~~~dg~~i~iwd~~------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +++.|+. |++||+.                  .++++..+ .  |...|.+++|+|++++|++++.||.|++||+.+++
T Consensus       163 ~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          163 AGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P--SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             EEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C--CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             EEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc-c--CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            9999999 9999985                  34455555 3  77899999999999999999999999999999876


Q ss_pred             CCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          257 GSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      ...                                      .....+..+...+.+++|+|++++|++++.++.+ +|..
T Consensus       239 ~~~--------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          239 QPP--------------------------------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             SCE--------------------------------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             Ccc--------------------------------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            310                                      0011244566789999999999999988777655 7766


Q ss_pred             C
Q 018248          337 D  337 (359)
Q Consensus       337 ~  337 (359)
                      .
T Consensus       280 ~  280 (377)
T 3dwl_C          280 N  280 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.2e-32  Score=227.35  Aligned_cols=242  Identities=17%  Similarity=0.202  Sum_probs=197.2

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|.+++|+|+|++|++|+ |+.|++|+...........   .+...+....+.+.++.++.++    .|+.+++|
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s----~d~~~~~~  155 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGS----RDKTIKLW  155 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEE----TTSCEEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec---CCCCceeEEEEeecCccceeec----CCCeEEEE
Confidence            35889999999999999999999 9999999998765554433   4577788888888888888777    78999999


Q ss_pred             ECCCccEEeee-c-cCcceeEEEEecce--eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           82 DDHENRYLGEL-S-FRSEVKNVRLRRDR--IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        82 d~~~~~~~~~~-~-~~~~v~~~~~~~~~--~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      |+......... . |...+..++|++++  .+++   .|+.|++||+++++.+..+..|...+..++|+|+++.  +++ 
T Consensus       156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s-  232 (340)
T 4aow_A          156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL--CAS-  232 (340)
T ss_dssp             CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEE-
T ss_pred             EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE--EEE-
Confidence            98766544332 3 78899999998764  3443   7899999999999999999999999999999998864  555 


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec-------CCCCcceE
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR-------GAERAEIY  227 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~-------~~~~~~i~  227 (359)
                      |+.|+.|++|+...........+...+.+++|+|++.++ +++.|+. |++||++++..+..+..       ..|...|+
T Consensus       233 ~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (340)
T 4aow_A          233 GGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQCT  310 (340)
T ss_dssp             EETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTE-EEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred             EeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCE-EEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence            667999999998764444434456789999999998765 5567888 99999998887776643       23678999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +++|+|||++|++|+.||.|+|||++++.
T Consensus       311 ~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          311 SLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.3e-32  Score=232.27  Aligned_cols=238  Identities=16%  Similarity=0.134  Sum_probs=200.2

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNF  121 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~  121 (359)
                      .|..+|.+++++++++.+++++    .|+.|++||+.+++  .+..+. |...|.+++|+|++.+++   .|+.|++||+
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~----~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICP----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEEC----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            4789999999999999888877    68999999998887  777777 899999999999998877   7899999999


Q ss_pred             ccceeeeeE--eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee----eEE-eecccccccEEEEccCCcEEE
Q 018248          122 TDLKLVDQI--ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----SKY-ITAHASRIASIAMTLDGRFVA  194 (359)
Q Consensus       122 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~----~~~-~~~~~~~i~~~~~s~~~~~l~  194 (359)
                      .+++....+  ..+...+..++|+|+++.  +++ ++.|+.|++|+.+...    ... ...|...|.+++|+|++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKK--FAV-GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSE--EEE-EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCE--EEE-EeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            888755444  457778899999998764  555 5579999998876533    233 367889999999999999999


Q ss_pred             EEeCCCCeEEEEEc------------------CCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          195 TASSKGTLIRVFNT------------------MDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       195 ~~~~dg~~i~iwd~------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +++.|+. |++||+                  ..++.+..+..  |...|.+++|+|++++|++++.|+.|++||+++++
T Consensus       159 ~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          159 AGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             EEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             EEcCCCC-EEEEEcccccccccccccccccccchhhheEecCC--CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            9999999 999995                  46788888875  77899999999999999999999999999999876


Q ss_pred             CCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          257 GSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      ..                                          ..+..+...+..++|+|++++|+++ .||.|++|++
T Consensus       236 ~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          236 AV------------------------------------------ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             EE------------------------------------------EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             ee------------------------------------------EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence            21                                          1133455688999999999888877 9999999999


Q ss_pred             CC
Q 018248          337 DP  338 (359)
Q Consensus       337 ~~  338 (359)
                      ..
T Consensus       273 ~~  274 (372)
T 1k8k_C          273 DS  274 (372)
T ss_dssp             ET
T ss_pred             cC
Confidence            76

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=228.15  Aligned_cols=239  Identities=9%  Similarity=0.096  Sum_probs=203.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC-----Ce
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS-----NK   77 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~   77 (359)
                      .|...|.+++|+|++++|++++ |+.|++||+.+++......    |...+..++++++++.++.++    .+     +.
T Consensus        72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~----~~~~~~~g~  143 (369)
T 3zwl_B           72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFLAIL----DNVMKNPGS  143 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEEEEE----CCBTTBCCE
T ss_pred             hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEEEec----CCccCCCCE
Confidence            5889999999999999999999 9999999999876654333    578999999999999888877    45     99


Q ss_pred             EEEEECCCccE-----------Eeeec-cCc--ceeEEEEecceeEEE---ecCeEEEEEccc-ceeeeeEeccCCCcee
Q 018248           78 VMIWDDHENRY-----------LGELS-FRS--EVKNVRLRRDRIVVV---LNQKVYVYNFTD-LKLVDQIETVVNPTGL  139 (359)
Q Consensus        78 i~iwd~~~~~~-----------~~~~~-~~~--~v~~~~~~~~~~~~~---~d~~i~i~d~~~-~~~~~~~~~~~~~~~~  139 (359)
                      |++||+.++..           +..+. +..  .+.+++|+|++.+++   .|+.|++||+.+ .+.+..+..+...+..
T Consensus       144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred             EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence            99999876532           22222 333  899999999998877   789999999988 7888889989999999


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC--------------CeEEE
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG--------------TLIRV  205 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~~i~i  205 (359)
                      ++|+|++..  +++ ++.|+.|++|+...........+...+.+++|+|+++++++++.++              . +++
T Consensus       224 ~~~~~~~~~--l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~  299 (369)
T 3zwl_B          224 MQFSPDLTY--FIT-SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-ARF  299 (369)
T ss_dssp             EEECTTSSE--EEE-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-EEE
T ss_pred             EEECCCCCE--EEE-ecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-eEE
Confidence            999998765  554 5579999999987644444344788999999999999999999888              7 999


Q ss_pred             EEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          206 FNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ||..+++.+..+..  |...|.+++|+|++++|++++.||.|++|+++.+.
T Consensus       300 ~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          300 YHKIFEEEIGRVQG--HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EETTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             EecCCCcchhheec--ccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            99999999999987  77899999999999999999999999999998754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.9e-32  Score=236.92  Aligned_cols=242  Identities=12%  Similarity=0.132  Sum_probs=198.5

Q ss_pred             CCCCceEEEEEccC-CCEEEEec-CCceEEEEcCCC--------cceeeeecccCCCCceeEEEEeccCC-EEEEEecCC
Q 018248            4 PDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDPY--------KPIMRRDFDRNPRGGTQLVSMLFRSN-IICLVNSGP   72 (359)
Q Consensus         4 ~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~   72 (359)
                      .|...|++++|+|+ +.+|++++ +|.|++|++...        .......+. +|...+..++|++++. .++.++   
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~---  201 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSAS---  201 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEEC---
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEe---
Confidence            47889999999997 67899999 999999999751        122223444 7999999999999887 555555   


Q ss_pred             CCCCeEEEEECCCccE-------Eeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccc---eeeeeEeccCCCc
Q 018248           73 HQSNKVMIWDDHENRY-------LGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDL---KLVDQIETVVNPT  137 (359)
Q Consensus        73 ~~d~~i~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~  137 (359)
                       .||.|++|++.++..       ...+. |...|.+++|+| ++.+++   .|+.|++||++++   +.+..+..|...+
T Consensus       202 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 -DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             -TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             -CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence             689999999987322       33443 888999999999 555555   7999999999876   5677778888999


Q ss_pred             eeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCC----
Q 018248          138 GLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMD----  210 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~----  210 (359)
                      ..++|+|++..+ +++ |+.||.|++|+.+.  .++..+..|...|.+++|+|+++ +|++++.|+. |++||+..    
T Consensus       281 ~~i~~~p~~~~~-l~t-g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~  357 (430)
T 2xyi_A          281 NCLSFNPYSEFI-LAT-GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEE  357 (430)
T ss_dssp             EEEEECSSCTTE-EEE-EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCC
T ss_pred             EEEEeCCCCCCE-EEE-EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccc
Confidence            999999988753 333 66799999999875  56788889999999999999995 7999999999 99999987    


Q ss_pred             ----------CcEEEEeecCCCCcceEEEEecCCCC-EEEEEcCCCcEEEEEccCC
Q 018248          211 ----------GSLLQEMRRGAERAEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       211 ----------~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~  255 (359)
                                .+.+..+..  |...|.+++|+|+++ +|++++.||.|+||++...
T Consensus       358 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                      356666655  778999999999999 8999999999999999764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=240.20  Aligned_cols=288  Identities=10%  Similarity=0.063  Sum_probs=207.1

Q ss_pred             EEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEec-cCCEEEEEecCCCCCCeEEEEECCC---cc-
Q 018248           13 ALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF-RSNIICLVNSGPHQSNKVMIWDDHE---NR-   87 (359)
Q Consensus        13 ~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~iwd~~~---~~-   87 (359)
                      .|+|+++.++++.     .|+.+ +  .....+..+|.+.|.++++++ +++.++.++    .|+.|++||+.+   +. 
T Consensus        34 ~f~~~~~~~~~~~-----~w~~~-g--~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s----~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           34 EFGPIQEIVRSPN-----MGNLR-G--KLIATLMENEPNSITSSAVSPGETPYLITGS----DQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGCCCCCCCCCCC-----GGGCC-C--CEEEEECTTTTSCEEEEEEECSSSCEEEEEE----TTSEEEEEEHHHHHTTCC
T ss_pred             hcCCccccccccc-----ccccc-c--eEEeeeccCCCCceEEEEECCCCCCEEEEec----CCceEEEeECcccccCcc
Confidence            3567777776654     47644 2  233455338999999999999 888888887    789999999876   33 


Q ss_pred             --EEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcc---cceeeeeEec------------cCCCceeeeeecCCC
Q 018248           88 --YLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFT---DLKLVDQIET------------VVNPTGLCDVSQNAG  147 (359)
Q Consensus        88 --~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~---~~~~~~~~~~------------~~~~~~~~~~~~~~~  147 (359)
                        ....+.|...|.+++|+|++..++   .|+.|++||+.   +++....+..            +...+..+.+.+.++
T Consensus       102 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          102 YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence              344456899999999999988777   79999999994   4544443332            223333444333344


Q ss_pred             ccEEEecCCCCeeEEEEecCC-eeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          148 PMVMACPGLLKGQVRVEDYGT-KKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      ..++++ |+.|+.|++|+... +.+..+..  |...|++++|+|++++|++|+.||. |++||+++++.+..+... |..
T Consensus       182 ~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~-~~~  258 (437)
T 3gre_A          182 KSLLVA-LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFG-DHA  258 (437)
T ss_dssp             CEEEEE-EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEEBCT-TCE
T ss_pred             CCEEEE-EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCccEEEEEecC-CCC
Confidence            445666 66799999998754 66777777  8999999999999999999999999 999999999999888632 567


Q ss_pred             ceEEEEec----CCCCEEEEEcCCCcEEEEEccCCCCCCCC----CccccCCCCCccCCCCCceeeeeEeeeecceEEec
Q 018248          225 EIYSLAFS----SNAQWLAASSDKGTVHVFGLKVDSGSPGT----SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS  296 (359)
Q Consensus       225 ~i~~~~~s----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (359)
                      .|.+++|+    |++++|++++.||.|++||+++++.....    .......+.+....              +    . 
T Consensus       259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l----~-  319 (437)
T 3gre_A          259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG--------------L----E-  319 (437)
T ss_dssp             EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS--------------G----G-
T ss_pred             ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc--------------c----c-
Confidence            99999554    57889999999999999999877632100    00011111111000              0    0 


Q ss_pred             ccceeEEee--cCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          297 KWSMAQFRL--PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       297 ~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      .   ..+..  +.+.|.+++|+ ++++|++|+.||.|++|++..
T Consensus       320 ~---~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          320 E---LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             G---CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred             c---ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence            0   00112  45678999999 779999999999999999876

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=232.42  Aligned_cols=239  Identities=18%  Similarity=0.219  Sum_probs=191.4

Q ss_pred             CCCCceEEEEEccC---CCEEEEec-CCceEEEEcCCCc-ceeeeecccCCCCceeEEEE------eccCCEEEEEecCC
Q 018248            4 PDPITIHHLALNQD---HGCFATGT-ETGFRVYLSDPYK-PIMRRDFDRNPRGGTQLVSM------LFRSNIICLVNSGP   72 (359)
Q Consensus         4 ~h~~~v~~~~~s~~---g~~l~~~~-d~~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~------~~~~~~~~~~~~~~   72 (359)
                      .|..+|.+++|+|+   +++|++|+ |+.|++|++.+++ ..  ..+. +|...+..+.+      +++++.++.++   
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~---  136 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV--YSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGS---  136 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS--EEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEE---
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE--EEEE-ecccceEEEeeccccccCCCccEEEEEe---
Confidence            47889999999999   69999999 9999999999776 33  3344 79999999965      45666777666   


Q ss_pred             CCCCeEEEEECCCcc-EEeeec-cC----cceeEEE----EecceeEEE---ecCeEEEEEcccceeeeeEeccCCCcee
Q 018248           73 HQSNKVMIWDDHENR-YLGELS-FR----SEVKNVR----LRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGL  139 (359)
Q Consensus        73 ~~d~~i~iwd~~~~~-~~~~~~-~~----~~v~~~~----~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (359)
                       .|+.|++||+.+++ .+..+. +.    ..+.++.    |+|++.+++   .|+.|++||+++++.... ..+...+..
T Consensus       137 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~  214 (357)
T 3i2n_A          137 -RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCS  214 (357)
T ss_dssp             -TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEE
T ss_pred             -CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEE
Confidence             78999999999886 666665 33    3788888    678888887   689999999998887544 556788999


Q ss_pred             eeeec---CCCccEEEecCCCCeeEEEEecCCe-eeE-----EeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcC
Q 018248          140 CDVSQ---NAGPMVMACPGLLKGQVRVEDYGTK-KSK-----YITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTM  209 (359)
Q Consensus       140 ~~~~~---~~~~~~l~~~g~~d~~v~~~~~~~~-~~~-----~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~  209 (359)
                      ++|+|   +++.  +++ ++.||.|++|+.+.. ...     .+.+|...|.+++|+|+++ +|++++.||. |++||++
T Consensus       215 ~~~~~~~~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~  290 (357)
T 3i2n_A          215 LEFDRKDISMNK--LVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYE  290 (357)
T ss_dssp             EEESCSSSSCCE--EEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEE
T ss_pred             EEcCCCCCCCCE--EEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecC
Confidence            99999   5554  554 557999999887642 222     3348999999999999999 8999999999 9999997


Q ss_pred             CC-------------------cEEEEeecCCCCcceEEEEecCCCCEEE-EEcCCCcEEEEEccCCC
Q 018248          210 DG-------------------SLLQEMRRGAERAEIYSLAFSSNAQWLA-ASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       210 ~~-------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~  256 (359)
                      ++                   +.+..+..  |...|.+++|+|++++|+ +++.||.|+|||+.+.+
T Consensus       291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          291 YPIQRSKKDSEGIEMGVAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CCSCC--CCTTSCCCCCCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCcccccccCCCCccccccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            54                   35566665  778999999999999998 89999999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=242.28  Aligned_cols=240  Identities=11%  Similarity=0.034  Sum_probs=186.4

Q ss_pred             CCCceEEEEEccC------CCEEEEec-CCceEEEEcCCCcce---------eeeecccCCCCceeEEEEeccCCEEEEE
Q 018248            5 DPITIHHLALNQD------HGCFATGT-ETGFRVYLSDPYKPI---------MRRDFDRNPRGGTQLVSMLFRSNIICLV   68 (359)
Q Consensus         5 h~~~v~~~~~s~~------g~~l~~~~-d~~i~iw~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~   68 (359)
                      |.+.|.+++|+|+      +.+||+++ |++|+||++..+...         ....+. +|...+.+++|+++ +.++.+
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasg  283 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCG  283 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEE
T ss_pred             cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEE
Confidence            4678999999997      57999999 999999999865321         012344 78999999999864 455555


Q ss_pred             ecCCCCCCeEEEEECCCcc-EEeeec-cCcceeEE--EEecce-eEEE---ecCeEEEEEcccceeeeeEeccCC--Cce
Q 018248           69 NSGPHQSNKVMIWDDHENR-YLGELS-FRSEVKNV--RLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVN--PTG  138 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~--~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~  138 (359)
                      +    .||+|++||+.+++ +...+. |...|.++  .|+|++ .+++   .|++|++||+++++.+..+..+..  .+.
T Consensus       284 s----~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          284 F----KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             E----TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             e----CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            5    68999999998764 444455 89999999  568887 6666   899999999998887777766543  467


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC------
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG------  211 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~------  211 (359)
                      .++|+|++..  +++ ++.|+.|++|+.+. ..+..+.+|...|++++|+|+|++|++|+.|+. |++||+..+      
T Consensus       360 ~v~fsp~~~~--l~s-~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~  435 (524)
T 2j04_B          360 PVVYCPQIYS--YIY-SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIK  435 (524)
T ss_dssp             CEEEETTTTE--EEE-ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC-
T ss_pred             ceEeCCCcCe--EEE-eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccc
Confidence            8999998765  555 55789999998664 556778899999999999999999999999999 999985321      


Q ss_pred             --------------------------------------cEEEEeecCCCCcceEEEEecCCCC---EEEEEcCCCcEEEE
Q 018248          212 --------------------------------------SLLQEMRRGAERAEIYSLAFSSNAQ---WLAASSDKGTVHVF  250 (359)
Q Consensus       212 --------------------------------------~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~iw  250 (359)
                                                            ..+..+.  .|...|.+++|+|+++   +|++|+.+|.|+||
T Consensus       436 ~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             -----CCCCEEEECBCCSSSCEEEECCCCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred             cCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence                                                  0011121  1567899999999964   99999999999999


Q ss_pred             EccCCC
Q 018248          251 GLKVDS  256 (359)
Q Consensus       251 ~~~~~~  256 (359)
                      ++....
T Consensus       514 ~l~~~~  519 (524)
T 2j04_B          514 YLSLEH  519 (524)
T ss_dssp             ECSCC-
T ss_pred             Eccccc
Confidence            997643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=235.01  Aligned_cols=245  Identities=8%  Similarity=0.150  Sum_probs=187.3

Q ss_pred             CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc-----------EEeeec-cC------------cceeEEEEe
Q 018248           49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR-----------YLGELS-FR------------SEVKNVRLR  104 (359)
Q Consensus        49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-----------~~~~~~-~~------------~~v~~~~~~  104 (359)
                      |.+.|.+++|+++++.++.++    .|+.|++||+.+++           ....+. |.            ..|.+++|+
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             ccCcEEEEEECCCCCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            578999999999999998887    78999999998876           466666 76            789999999


Q ss_pred             cce--eEEE---ecCeEEEEEcccceee---------------------------------------ee-EeccCCCcee
Q 018248          105 RDR--IVVV---LNQKVYVYNFTDLKLV---------------------------------------DQ-IETVVNPTGL  139 (359)
Q Consensus       105 ~~~--~~~~---~d~~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~~~~  139 (359)
                      |++  ..++   .|+.|++||+.+++..                                       .. ...|...+..
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            997  4444   8999999999764432                                       12 2468888999


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecCC-e-eeE-------EeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcC
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYGT-K-KSK-------YITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTM  209 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~-~~~-------~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~  209 (359)
                      ++|+|+++.  +++ | .|+.|++|+... . ...       .+..|...|.+++|+|++ ++|++++.||. |++||++
T Consensus       183 ~~~~~~~~~--l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~  257 (447)
T 3dw8_B          183 ISINSDYET--YLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMR  257 (447)
T ss_dssp             EEECTTSSE--EEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETT
T ss_pred             EEEcCCCCE--EEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECc
Confidence            999998764  666 5 699999999883 2 333       255899999999999998 99999999999 9999999


Q ss_pred             CCcE----EEEeecCCCCc------------ceEEEEecCCCCEEEEEcCCCcEEEEEccC-CCCCCCCCccccCCCCCc
Q 018248          210 DGSL----LQEMRRGAERA------------EIYSLAFSSNAQWLAASSDKGTVHVFGLKV-DSGSPGTSKLHSASEPNL  272 (359)
Q Consensus       210 ~~~~----~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~  272 (359)
                      +++.    +..+..  |..            .|.+++|+|++++|++++. +.|++||+++ ++....            
T Consensus       258 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~------------  322 (447)
T 3dw8_B          258 ASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVET------------  322 (447)
T ss_dssp             TCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCC------------
T ss_pred             CCccccceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccce------------
Confidence            9886    677765  433            8999999999999999998 9999999987 432210            


Q ss_pred             cCCCCCceeeeeEeeeecceEEecccceeE-E--eecCC---cEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          273 SSKNSSAISSFRFIRGVLPKYFSSKWSMAQ-F--RLPEN---VQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                           +..+..... +  .....   .+..++|+|++++|++|+.||.|++|++..
T Consensus       323 ---------------------~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          323 ---------------------YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             ---------------------EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             ---------------------eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence                                 000000000 0  00000   123489999999999999999999999876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-32  Score=230.49  Aligned_cols=261  Identities=8%  Similarity=0.046  Sum_probs=194.1

Q ss_pred             EccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC--------
Q 018248           14 LNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH--------   84 (359)
Q Consensus        14 ~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~--------   84 (359)
                      +.+++.+|++|+ |+.|++||+++++......     ...+..+.+.+.   ++.++    .|++|++|+..        
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s----~D~~i~~w~~~~~~~~~~~  111 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRG----PCNRLLLLYPGNQITILDS  111 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEEC----STTEEEEEETTTEEEEEET
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEec----CCCeEEEEEccCceEEeec
Confidence            446788999999 9999999999876654332     344555555544   44333    68999999654        


Q ss_pred             -CccEEeeec--cCcceeEEEEec--ceeEEE---ecCeEEEEEcccceeeeeEec-cCCCceeeeeecCCCccEEEecC
Q 018248           85 -ENRYLGELS--FRSEVKNVRLRR--DRIVVV---LNQKVYVYNFTDLKLVDQIET-VVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        85 -~~~~~~~~~--~~~~v~~~~~~~--~~~~~~---~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                       +++.+..+.  |...|.+++|+|  ++.+++   .|+.|++||+++++....... +...+.+++|+|++..  +++ |
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~--las-g  188 (343)
T 3lrv_A          112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL--LAL-Y  188 (343)
T ss_dssp             TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE--EEE-E
T ss_pred             CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE--EEE-E
Confidence             555555554  668899999999  888887   799999999999888666533 4456888999998764  665 6


Q ss_pred             CCCeeEEEEecCCe-ee-EEeec-ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC-CCCcce--EEE
Q 018248          156 LLKGQVRVEDYGTK-KS-KYITA-HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG-AERAEI--YSL  229 (359)
Q Consensus       156 ~~d~~v~~~~~~~~-~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~i--~~~  229 (359)
                      +.||.|++|+.+.. .. ..+.. |..+|.+++|+|++.+|++++.+ . |++||+++++.+..+... .+...+  .++
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-T-VVCFDLRKDVGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-B-EEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-e-EEEEEcCCCCcceeecccccccccccceEE
Confidence            78999999988753 34 57777 99999999999999999999954 8 999999998766544320 011223  469


Q ss_pred             EecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248          230 AFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN  308 (359)
Q Consensus       230 ~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      +|+|+|++|++++. |+.|+||++......                                   +..           .
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~-----------------------------------~~~-----------~  300 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKN-----------------------------------WTK-----------D  300 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCS-----------------------------------EEE-----------E
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccccc-----------------------------------eEe-----------c
Confidence            99999999999988 999999999876521                                   110           2


Q ss_pred             cEEEeeecc---cCCEEEEEecCCeEEEEEeC
Q 018248          309 VQYLVGFGR---QNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       309 ~v~~~~~s~---~~~~l~~~~~dg~i~v~~~~  337 (359)
                      .+..++|++   +.+.|++++.||.+.++-..
T Consensus       301 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          301 EESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CceeEecCccccccceeEEEecCCceEEEEec
Confidence            456788988   88999999999999988544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-31  Score=219.82  Aligned_cols=234  Identities=12%  Similarity=0.164  Sum_probs=195.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|...|.+++|+|++++|++|+ |+.|++|++..... .....+. +|...+..+++  +++.++.++    .|+.|++|
T Consensus        57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~----~d~~i~~~  129 (313)
T 3odt_A           57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGS----WDKTAKVW  129 (313)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEE----TTSEEEEE
T ss_pred             cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEe----CCCCEEEE
Confidence            4788999999999999999999 99999999875432 2223343 78888888777  677777777    78999999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEec-cCCCceeeeeecCCCccEEEecC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIET-VVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      |  .++.+..+. |...+.++.+.| ++..++   .|+.|++||  ..+....+.. +...+..++++|++.   +++ +
T Consensus       130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~-~  201 (313)
T 3odt_A          130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH---FIS-C  201 (313)
T ss_dssp             E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE---EEE-E
T ss_pred             c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe---EEE-c
Confidence            9  666777776 889999999988 666666   789999999  4566666666 788899999999876   444 5


Q ss_pred             CCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          156 LLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       156 ~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +.|+.|++|+.+ ++.+..+..|...|.+++|+|++ .|++++.||. |++||+++++.+..+..  |...|.+++|+|+
T Consensus       202 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~  277 (313)
T 3odt_A          202 SNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITL--PAISIWSVDCMSN  277 (313)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEEC--SSSCEEEEEECTT
T ss_pred             cCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEec--cCceEEEEEEccC
Confidence            579999998876 56778888999999999999999 5889999999 99999999999999987  6679999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCC
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      ++ +++++.||.|++|++++++.
T Consensus       278 ~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          278 GD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             SC-EEEEETTSCEEEEESCGGGC
T ss_pred             CC-EEEEeCCCcEEEEeCCCCce
Confidence            98 55688999999999998763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-31  Score=230.99  Aligned_cols=242  Identities=12%  Similarity=0.112  Sum_probs=198.2

Q ss_pred             CCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcc-----eeeeecccCCCCceeEEEEeccC-CEEEEEecCCCCC
Q 018248            4 PDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKP-----IMRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQS   75 (359)
Q Consensus         4 ~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d   75 (359)
                      .|...|.+++|+| ++++|++|+ |+.|++|++.++..     .....+. +|...|..++|++++ +.++.++    .|
T Consensus        79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~----~d  153 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAG----CD  153 (402)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEE----TT
T ss_pred             cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEc----CC
Confidence            5899999999999 999999999 99999999987632     1223444 899999999999997 5666666    68


Q ss_pred             CeEEEEECCCccEEeee--c-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE-eccCCC-ceeeeeecCCC
Q 018248           76 NKVMIWDDHENRYLGEL--S-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI-ETVVNP-TGLCDVSQNAG  147 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~-~~~~~~~~~~~  147 (359)
                      +.|++||+.+++.+..+  . |...|.+++|+|++.+++   .|+.|++||+++++.+..+ ..+... +..+.|+|++.
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            99999999999999988  5 889999999999998777   7999999999999998888 566654 67888998765


Q ss_pred             ccEEEecC---CCCeeEEEEecCCee--eEEe-ecccccccEEEEccCCcEEEE-EeCCCCeEEEEEcCCCcE-EEEeec
Q 018248          148 PMVMACPG---LLKGQVRVEDYGTKK--SKYI-TAHASRIASIAMTLDGRFVAT-ASSKGTLIRVFNTMDGSL-LQEMRR  219 (359)
Q Consensus       148 ~~~l~~~g---~~d~~v~~~~~~~~~--~~~~-~~~~~~i~~~~~s~~~~~l~~-~~~dg~~i~iwd~~~~~~-~~~~~~  219 (359)
                        ++++ |   +.|+.|++|+.....  .... ..|...+.+++|+|++++|++ ++.|+. |++||+.+++. +..+..
T Consensus       234 --~l~~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          234 --ILTT-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             --EEEE-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEEEEE
T ss_pred             --EEEE-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEeecc
Confidence              3554 4   679999999987632  3333 357788999999999999865 557999 99999998874 555554


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..+...|.+++|+|++.++++  .++.+++|++.++.
T Consensus       310 ~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          310 FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             cccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            335689999999999998874  56689999998764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=252.08  Aligned_cols=246  Identities=11%  Similarity=0.152  Sum_probs=202.7

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC--CccEEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEE
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH--ENRYLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVY  119 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~  119 (359)
                      +|.+.|.+++++++++.++.++    .||.|++||+.  +++.+..+. |...|.+++|+|+  +.+++   .||.|++|
T Consensus         7 gH~~~V~~l~~s~dg~~latg~----~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEE----TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEE----CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            8999999999999999888877    78999999987  556777777 9999999999987  77776   89999999


Q ss_pred             Ecccce--eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeecccccccEEEEcc------
Q 018248          120 NFTDLK--LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASRIASIAMTL------  188 (359)
Q Consensus       120 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~i~~~~~s~------  188 (359)
                      |+.+++  .+..+..|...+..++|+|+.....+++ |+.||.|++|+....   ....+..|...|.+++|+|      
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            998886  6777778899999999999832233555 567999999998764   4556788999999999999      


Q ss_pred             -------CCcEEEEEeCCCCeEEEEEcCCC----cEEEEeecCCCCcceEEEEecCC---CCEEEEEcCCCcEEEEEccC
Q 018248          189 -------DGRFVATASSKGTLIRVFNTMDG----SLLQEMRRGAERAEIYSLAFSSN---AQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       189 -------~~~~l~~~~~dg~~i~iwd~~~~----~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iw~~~~  254 (359)
                             ++.+|++|+.||. |++||++++    .....+..  |...|++++|+|+   +++|++++.||.|++||+.+
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             -----CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             cccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                   5899999999999 999999887    44555655  7789999999999   89999999999999999998


Q ss_pred             CCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEE
Q 018248          255 DSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKC  334 (359)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~  334 (359)
                      +.....                              .       .......+.+.+.+++|+|++++|++++.||.|++|
T Consensus       239 ~~~~~~------------------------------~-------~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          239 EQGPWK------------------------------K-------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW  281 (753)
T ss_dssp             SSSCCB------------------------------C-------CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred             CCCcce------------------------------e-------EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            652110                              0       000011234678899999999999999999999999


Q ss_pred             EeCC
Q 018248          335 EFDP  338 (359)
Q Consensus       335 ~~~~  338 (359)
                      ++..
T Consensus       282 d~~~  285 (753)
T 3jro_A          282 KENL  285 (753)
T ss_dssp             BCCS
T ss_pred             ecCC
Confidence            9875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.2e-30  Score=220.44  Aligned_cols=262  Identities=13%  Similarity=0.085  Sum_probs=206.0

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcc
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSE   97 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~   97 (359)
                      .++++++ |+.|++||+++++...  .+. +| ..+..++++++++.+++++.   .|+.|++||+.+++.+..+.+...
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~--~~~-~~-~~~~~~~~s~dg~~l~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA--TIP-VG-SNPMGAVISPDGTKVYVANA---HSNDVSIIDTATNNVIATVPAGSS   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE--EEE-CS-SSEEEEEECTTSSEEEEEEG---GGTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE--Eee-cC-CCcceEEECCCCCEEEEECC---CCCeEEEEECCCCeEEEEEECCCC
Confidence            3567777 9999999999876553  332 33 45788999999988765553   479999999999999999986679


Q ss_pred             eeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeE
Q 018248           98 VKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSK  172 (359)
Q Consensus        98 v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~  172 (359)
                      +.+++|+|++..++    .++.|++||+.+++.+..+..+. .+..++|+|+++.++++  +..++.|++|+... +...
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEE--eCCCCEEEEEECCCCcEEE
Confidence            99999999998665    46999999999999888877544 56788999988763333  55789999998765 4555


Q ss_pred             EeecccccccEEEEccCCcEE-EEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEE
Q 018248          173 YITAHASRIASIAMTLDGRFV-ATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVH  248 (359)
Q Consensus       173 ~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~  248 (359)
                      .+..+ ..+.+++|+|++++| ++++.++. |++||+++++.+..+.   +...+.+++|+|++++|++++   .++.|+
T Consensus       153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~  227 (391)
T 1l0q_A          153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVS  227 (391)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred             EEecC-CCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence            55544 556999999999987 56778888 9999999999888776   346889999999999998887   689999


Q ss_pred             EEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEE-EEEec
Q 018248          249 VFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTI-VIVGL  327 (359)
Q Consensus       249 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~  327 (359)
                      +||+.+++..                                 .         .+..+ ..+..++|+|++++| ++++.
T Consensus       228 ~~d~~~~~~~---------------------------------~---------~~~~~-~~~~~~~~s~dg~~l~~s~~~  264 (391)
T 1l0q_A          228 MIDTGTNKIT---------------------------------A---------RIPVG-PDPAGIAVTPDGKKVYVALSF  264 (391)
T ss_dssp             EEETTTTEEE---------------------------------E---------EEECC-SSEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCeEE---------------------------------E---------EEecC-CCccEEEEccCCCEEEEEcCC
Confidence            9999876511                                 0         01111 245789999999988 56677


Q ss_pred             CCeEEEEEeCC
Q 018248          328 DGSYYKCEFDP  338 (359)
Q Consensus       328 dg~i~v~~~~~  338 (359)
                      ||.|++|++..
T Consensus       265 d~~v~v~d~~~  275 (391)
T 1l0q_A          265 XNTVSVIDTAT  275 (391)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCEEEEEECCC
Confidence            99999998875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.2e-31  Score=234.17  Aligned_cols=201  Identities=12%  Similarity=0.104  Sum_probs=161.5

Q ss_pred             CCCCceeEEEEecc-CCEEEEEecCCCCCCeEEEEECCCccEEee--ec-cCcceeEEEEec-ceeEEE---ecCeEEEE
Q 018248           48 NPRGGTQLVSMLFR-SNIICLVNSGPHQSNKVMIWDDHENRYLGE--LS-FRSEVKNVRLRR-DRIVVV---LNQKVYVY  119 (359)
Q Consensus        48 ~h~~~v~~~~~~~~-~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~  119 (359)
                      +|...|.+++|+|. ++.++.++    .||.|+|||+.+++....  +. |...|.+++|+| ++.+++   .|++|++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs----~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGS----KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEE----TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEe----CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            57888999999985 45666666    789999999987754433  33 899999999998 566666   89999999


Q ss_pred             EcccceeeeeEeccC--CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCc-EEEEE
Q 018248          120 NFTDLKLVDQIETVV--NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGR-FVATA  196 (359)
Q Consensus       120 d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~  196 (359)
                      |++++........+.  ..+..+++++++..  +++ |+.||.|++|+.+++.+..+.+|...|.+++|+|++. +|+++
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSASSRM--VVT-GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEETTTTE--EEE-ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eccCCceeEEeccCCCCccEEEEEECCCCCE--EEE-EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEe
Confidence            997655433333333  33456778887754  665 7789999999999988888999999999999999886 78899


Q ss_pred             eCCCCeEEEEEcCCCcEEEEee-cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          197 SSKGTLIRVFNTMDGSLLQEMR-RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       197 ~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +.|+. |++||+++.+....+. ...|...|++++|+|+|++|++++.||.|+|||+.++.
T Consensus       270 s~d~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          270 SVDQT-VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             ETTSB-CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             cCcce-eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            99999 9999998876543332 12377899999999999999999999999999998876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6e-31  Score=226.57  Aligned_cols=259  Identities=10%  Similarity=0.039  Sum_probs=165.5

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceee---eecccCCCCceeEEEEec--------cCCEEEEEecCCCCC
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMR---RDFDRNPRGGTQLVSMLF--------RSNIICLVNSGPHQS   75 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~---~~~~~~h~~~v~~~~~~~--------~~~~~~~~~~~~~~d   75 (359)
                      .+....+++++.+|++|+ |++|+|||++.++....   ..+. ||.+.|..++|+|        +++.++.++    .|
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s----~D  165 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVG----DD  165 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEE----TT
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEE----CC
Confidence            334444556677899999 99999999987654332   2344 9999999999987        455666666    79


Q ss_pred             CeEEEEECCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248           76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      ++|++||+.++..+..+. |...+.+++|+|++. +++   .|++|++||+++++.......+........+++....  
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~--  243 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP--  243 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG--
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc--
Confidence            999999998877665554 899999999999874 455   8999999999888766555433322222222221111  


Q ss_pred             EEecCCCCeeEEEEecCCeeeEEeecccccccEEEEc-cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248          151 MACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMT-LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSL  229 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  229 (359)
                                       ........+|...+.++.|+ |+++.|++++.|+. +++||+..++....+..  +...+..+
T Consensus       244 -----------------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~~~~~~~~  303 (393)
T 4gq1_A          244 -----------------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--STMKLGPK  303 (393)
T ss_dssp             -----------------GC------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC---------------------
T ss_pred             -----------------ceeeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--ecCccccE
Confidence                             01112234688899999987 89999999999999 99999988776655543  22233333


Q ss_pred             E------------------ecC--CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeee
Q 018248          230 A------------------FSS--NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGV  289 (359)
Q Consensus       230 ~------------------~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (359)
                      .                  |+|  ++.++++|+.||.|++||+.+++...                              
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~------------------------------  353 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS------------------------------  353 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE------------------------------
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE------------------------------
Confidence            2                  332  34567888999999999999876320                              


Q ss_pred             cceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          290 LPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                                  ....+...|.+++|+|||++||+++.+| +.+|++
T Consensus       354 ------------~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          354 ------------IPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ------------EEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ------------EecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                        1223456899999999999999998877 555555

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-30  Score=220.70  Aligned_cols=252  Identities=10%  Similarity=0.061  Sum_probs=192.1

Q ss_pred             cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----EEeeeccCcceeEEEEeccee-EEE---ecCeEEE
Q 018248           47 RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----YLGELSFRSEVKNVRLRRDRI-VVV---LNQKVYV  118 (359)
Q Consensus        47 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~---~d~~i~i  118 (359)
                      .+|.+.|.+++|+++++.+++++    .|+.|++|++.+++    ......|...|.+++|+|++. +++   .|+.|++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            37999999999999999888887    68999999998877    544455999999999999998 666   7999999


Q ss_pred             EEc-ccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC---------ee-eEEeecccccccEEE
Q 018248          119 YNF-TDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---------KK-SKYITAHASRIASIA  185 (359)
Q Consensus       119 ~d~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---------~~-~~~~~~~~~~i~~~~  185 (359)
                      ||+ .+++. ..+..  |...+..++|+| ++.  +++ ++.|+.|++|+...         .. +..+. |...+.+++
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~--l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDK--LIA-ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTE--EEE-EETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCE--EEE-EcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence            999 77755 66677  888999999999 543  554 55799999998764         32 33344 888999999


Q ss_pred             EccCCcEEEEEeCCCCeEEEEEcCC-CcEEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCCCc
Q 018248          186 MTLDGRFVATASSKGTLIRVFNTMD-GSLLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGTSK  263 (359)
Q Consensus       186 ~s~~~~~l~~~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  263 (359)
                      |+|++  +++++.++. |++||+++ +..........+...+.+++|+| ++++|++++.||.|++|+++.......   
T Consensus       158 ~~~~~--l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---  231 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---  231 (342)
T ss_dssp             ECSSE--EEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT---
T ss_pred             ecCCc--EEEEeCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc---
Confidence            99988  889999999 99999988 55322222222677999999999 999999999999999999987610000   


Q ss_pred             cccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          264 LHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                   ..           ....+...........+...|.+++|+|++++|++++.||.|++|++..
T Consensus       232 -------------~~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          232 -------------SS-----------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             -------------CT-----------TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             -------------cc-----------cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence                         00           0000111100000001234889999999999999999999999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.7e-28  Score=211.47  Aligned_cols=238  Identities=13%  Similarity=0.071  Sum_probs=194.8

Q ss_pred             CCCceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            5 DPITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +...+.+++|+|+|+++ ++++ |+.|++||+.+++.......    ...+..++++++++.+++++.   .++.|++||
T Consensus        30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~---~~~~v~v~d  102 (391)
T 1l0q_A           30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQVYVTNM---ASSTLSVID  102 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEET---TTTEEEEEE
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC----CCCccceEECCCCCEEEEEEC---CCCEEEEEE
Confidence            34568999999999987 6666 99999999988766543332    348899999999988876653   469999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +.+++.+..+.+...+.+++|+|+++.++    .++.|++||+.+++.+..+..+. .+..++|+|+++.++++  +..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~--~~~~  179 (391)
T 1l0q_A          103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA--NFDS  179 (391)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE--ETTT
T ss_pred             CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE--eCCC
Confidence            99999998888777899999999998663    68999999999999888887654 45788999988763333  5578


Q ss_pred             eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe---CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248          159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS---SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                      +.|++|+...........+...+.+++|+|++++|++++   .++. |++||+.+++.+..+..  + ..+.+++|+|++
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~--~-~~~~~~~~s~dg  255 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV--G-PDPAGIAVTPDG  255 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC--C-SSEEEEEECTTS
T ss_pred             CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEec--C-CCccEEEEccCC
Confidence            999999987655544445667889999999999998888   6888 99999999999888875  3 358999999999


Q ss_pred             CEE-EEEcCCCcEEEEEccCCC
Q 018248          236 QWL-AASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       236 ~~l-~~~~~dg~i~iw~~~~~~  256 (359)
                      ++| ++++.|+.|++||+.+++
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEcCCCCEEEEEECCCCc
Confidence            977 677889999999999865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=3.7e-29  Score=203.85  Aligned_cols=278  Identities=11%  Similarity=0.042  Sum_probs=186.9

Q ss_pred             eEEEEEccCCC---EEEEecCCceEEEEcCCCc-ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            9 IHHLALNQDHG---CFATGTETGFRVYLSDPYK-PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         9 v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      +.++-|-..|-   .+++++...|++|+..... -....++. +|..+|..+.+.|+...++.+.-|..+-+.|+..-+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55666655443   5677779999999998762 12334444 5777888777777654444433322112222221111


Q ss_pred             C-----ccEEeeeccCcceeEEEEecceeEEE-----ecCeEEEEEc-ccceeeeeEeccCCCceeeeeec-CCCccEEE
Q 018248           85 E-----NRYLGELSFRSEVKNVRLRRDRIVVV-----LNQKVYVYNF-TDLKLVDQIETVVNPTGLCDVSQ-NAGPMVMA  152 (359)
Q Consensus        85 ~-----~~~~~~~~~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  152 (359)
                      .     ++.+..-.+...|.++   ++++++.     .|+.|++|++ .+++.+..+..|...+..++|++ ++++.+++
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La  197 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL  197 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred             CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence            1     1222221133344443   5777776     2899999999 56888888889999999999999 66666687


Q ss_pred             ecCCCCeeEEEEecC-CeeeEEeeccc---ccccEEEEccCCcEE------------EEEeCCCCeEEEEEcCCCcEEEE
Q 018248          153 CPGLLKGQVRVEDYG-TKKSKYITAHA---SRIASIAMTLDGRFV------------ATASSKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~-~~~~~~~~~~~---~~i~~~~~s~~~~~l------------~~~~~dg~~i~iwd~~~~~~~~~  216 (359)
                      + |+.|++|+||+.. ++.++.+.+|.   ..+.+++|+|+|+++            ++|+.|++ |++||..+++.+..
T Consensus       198 S-gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~l~v  275 (356)
T 2w18_A          198 G-TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLSVGV  275 (356)
T ss_dssp             E-EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEEEEE
T ss_pred             E-ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEEEEE
Confidence            7 7789999999987 56778887654   357778999999976            56788999 99999999988766


Q ss_pred             ee---cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248          217 MR---RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY  293 (359)
Q Consensus       217 ~~---~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (359)
                      +.   ...|...+.+..++  +.++++++.|++|+|||+.+++..                                   
T Consensus       276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l-----------------------------------  318 (356)
T 2w18_A          276 MLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT-----------------------------------  318 (356)
T ss_dssp             EEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE-----------------------------------
T ss_pred             EEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE-----------------------------------
Confidence            52   11144445544444  889999999999999999998721                                   


Q ss_pred             EecccceeEEeecCCc-EEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          294 FSSKWSMAQFRLPENV-QYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                             .+++.|.+. +..++|+|||++|++|+.|++|+||++
T Consensus       319 -------~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          319 -------ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -------EEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -------EEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                   112223333 446899999999999999999999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=7.8e-30  Score=220.87  Aligned_cols=241  Identities=10%  Similarity=0.065  Sum_probs=186.2

Q ss_pred             CCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC---EEEEEecCCCCCCeE
Q 018248            4 PDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN---IICLVNSGPHQSNKV   78 (359)
Q Consensus         4 ~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~~d~~i   78 (359)
                      .|...|.+++|+| ++.+|++++ |+.|++||+.+++......    +...+..+.+.+...   .++.++    .|+.|
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v  168 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGT----RGPKV  168 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEE----SSSSE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEc----CCCeE
Confidence            4899999999999 778999998 9999999999876554433    467888888887543   566555    68999


Q ss_pred             EEEECCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccce-eeeeE---------------eccCCCc
Q 018248           79 MIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLK-LVDQI---------------ETVVNPT  137 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~-~~~~~---------------~~~~~~~  137 (359)
                      ++||+.+++.+..+. |...|.+++|+|++. +++   .|+.|++||+++++ .+..+               ..+...+
T Consensus       169 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             EEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             EEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            999999999988888 899999999999987 344   79999999997654 33333               4567778


Q ss_pred             eeeeeecCCCccEEEecCCCCeeEEEEecCCeee-EEeecc-----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          138 GLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYITAH-----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~-~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                      ..++|+|+++.  +++ ++.|+.|++|+...... .....+     ...+........+..+++++.++. |++||+.++
T Consensus       249 ~~~~~~~~~~~--l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~d~~~~  324 (408)
T 4a11_B          249 NGLCFTSDGLH--LLT-VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST-IAVYTVYSG  324 (408)
T ss_dssp             EEEEECTTSSE--EEE-EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE-EEEEETTTC
T ss_pred             eEEEEcCCCCE--EEE-ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE-EEEEECcCC
Confidence            88999998765  555 55799999999875332 222111     112222222334556677788898 999999999


Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      +.+..+..  |...|++++|+|++++|++++.||.|++||+++.+..
T Consensus       325 ~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          325 EQITMLKG--HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             CEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred             cceeeecc--CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence            99999987  7789999999999999999999999999999988743

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-31  Score=231.36  Aligned_cols=285  Identities=10%  Similarity=0.061  Sum_probs=203.8

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .|+..|.+++|+|+|      .++.+.+|+.+   ......+  +|...|..++|+|++..++.++    .||.|++||.
T Consensus        50 gh~~~v~~V~FsPdg------~~~~~~~~~~~---~~~~~~~--~~~~~V~~vawSPdG~~LAs~s----~dg~V~iwd~  114 (588)
T 2j04_A           50 CNSKNLFHVKEFPLE------FENKLDFELAQ---QNGLLNS--QPVCYPRVCKPSPIDDWMAVLS----NNGNVSVFKD  114 (588)
T ss_dssp             SBGGGTEEEEEECCC------CCCTTTTSCCC---SSCSSTT--SCSCCEEEEEECSSSSCEEEEE----TTSCEEEEET
T ss_pred             CCCccEEEEEECCCC------CcceEEEEeCC---CceEeec--CCCCcEEEEEECCCCCEEEEEe----CCCcEEEEeC
Confidence            588999999999999      45566665543   2222333  4688899999999999999988    7899999995


Q ss_pred             CCccEEeeeccCc-----ceeEEEEecceeEEE---ecCeEEEEEcccce-------eeeeE----eccCCCceeeeeec
Q 018248           84 HENRYLGELSFRS-----EVKNVRLRRDRIVVV---LNQKVYVYNFTDLK-------LVDQI----ETVVNPTGLCDVSQ  144 (359)
Q Consensus        84 ~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~-------~~~~~----~~~~~~~~~~~~~~  144 (359)
                      .+  ++..+.|..     .+.+++|+|+|++++   .||+|++||+.+++       .+.++    .+|...|..++|+|
T Consensus       115 ~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP  192 (588)
T 2j04_A          115 NK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE  192 (588)
T ss_dssp             TE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred             Cc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence            44  555555343     599999999999998   79999999998774       25666    45667899999999


Q ss_pred             CCCccEEEecCCCCeeEEEEecCCeee----EEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGTKKS----KYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~~~~----~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      ++    +++ ++.|+.|++|+..+...    +.+ .+|...|.+++|+  |+.||+++ ++. |++||+.+++......+
T Consensus       193 dg----Laa-ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~~~g  263 (588)
T 2j04_A          193 DV----LVA-ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSLKTG  263 (588)
T ss_dssp             TE----EEE-EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEEECS
T ss_pred             Cc----EEE-EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEEEcC
Confidence            87    333 33599999999887553    345 4788999999999  68999887 588 99999988777433333


Q ss_pred             CCCCcceEEEEe--cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecc
Q 018248          220 GAERAEIYSLAF--SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK  297 (359)
Q Consensus       220 ~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (359)
                        |.+.+.+++|  +||++.|++++.||+ ++|..+.-.            +.|++.........+   .     .|...
T Consensus       264 --h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~------------~spd~~l~a~~d~~v---~-----lW~~~  320 (588)
T 2j04_A          264 --SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH------------VTADNIIAPYLEKKF---K-----KWSTI  320 (588)
T ss_dssp             --CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE------------EECCCSSHHHHHHHH---H-----HTTTT
T ss_pred             --CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE------------ECCCceEEEEcCCEE---E-----EEECC
Confidence              7889999999  999999999999999 999987211            222221000000000   0     01100


Q ss_pred             -cceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeCC
Q 018248          298 -WSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDP  338 (359)
Q Consensus       298 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~  338 (359)
                       ..+..++. ...|.+++|||||+.+|+++. +..+.-|.+..
T Consensus       321 g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i~s  362 (588)
T 2j04_A          321 WNEFNNYET-TLVIHGISLSPDGYSIAIVYDMERVAFKYKIAS  362 (588)
T ss_dssp             TTSSSSSCC-EEEEEEEEECTTSSEEEEEEEEECSSCCCCCSS
T ss_pred             CCceeeecc-ceEEEEEEECCCCCEEEEEEeccCceeEEeecc
Confidence             00111111 235889999999999999887 33334455444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.8e-29  Score=218.83  Aligned_cols=256  Identities=11%  Similarity=0.123  Sum_probs=189.8

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc---EEeeec-c-------------------------------
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR---YLGELS-F-------------------------------   94 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~-~-------------------------------   94 (359)
                      ..++.+++++++++.++.+.     ++.|++||+.+++   .+..+. +                               
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS   78 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence            35778889999998544433     5899999999988   555544 1                               


Q ss_pred             -----------------------CcceeEEEEecceeEE-E---ecCeEEEEEcc--cceeeeeEe--ccCCCceeeeee
Q 018248           95 -----------------------RSEVKNVRLRRDRIVV-V---LNQKVYVYNFT--DLKLVDQIE--TVVNPTGLCDVS  143 (359)
Q Consensus        95 -----------------------~~~v~~~~~~~~~~~~-~---~d~~i~i~d~~--~~~~~~~~~--~~~~~~~~~~~~  143 (359)
                                             ...|.+++|+|++.++ +   .|+.|++||+.  +++.+..+.  .+...+..++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                                   1259999999999885 4   78999999998  788888776  456778889999


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCCe-----eeEEeecccccccEEEEccC---CcEEEEEeCCCCeEEEEEcCCCcEEE
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGTK-----KSKYITAHASRIASIAMTLD---GRFVATASSKGTLIRVFNTMDGSLLQ  215 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~~i~iwd~~~~~~~~  215 (359)
                      |++..  +++ |+.+|.+++|+....     ....+.+|...|.+++|+|+   +++|++++.|+. |++||+++++.+.
T Consensus       159 p~~~~--l~~-~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~  234 (450)
T 2vdu_B          159 EDDTT--VII-ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIVD  234 (450)
T ss_dssp             TTSSE--EEE-EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCEE
T ss_pred             CCCCE--EEE-EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCceee
Confidence            98865  555 556999999876542     22367889999999999999   999999999999 9999999999887


Q ss_pred             EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCc---cccCCCCCccCCCCCceeeeeEeeeecce
Q 018248          216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSK---LHSASEPNLSSKNSSAISSFRFIRGVLPK  292 (359)
Q Consensus       216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (359)
                      .+..+ |...|.+++|+ ++++|++++.|+.|++||+.+++.......   .....+....                .+.
T Consensus       235 ~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~  296 (450)
T 2vdu_B          235 KWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHL----------------APP  296 (450)
T ss_dssp             EECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSB----------------C--
T ss_pred             eeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccc----------------ccc
Confidence            75422 77899999999 999999999999999999998763210000   0000000000                000


Q ss_pred             EEecccceeEEeecCCcEEEeeecccCCEEEEEe-cCCeEEEEEe
Q 018248          293 YFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVG-LDGSYYKCEF  336 (359)
Q Consensus       293 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~  336 (359)
                      .+...    ........+..++|+|++++|++++ .||.|++|++
T Consensus       297 ~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          297 RFQNE----NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             ------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             ccccc----ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            00000    0001224678999999999999999 8999999999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.5e-29  Score=214.56  Aligned_cols=241  Identities=12%  Similarity=0.102  Sum_probs=193.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEE--eccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSM--LFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|...|.+++|+|++++|++++ |+.|++||+++++...  ..  +|...+..++|  .++++.++.++    .|+.|++
T Consensus        84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~v  155 (368)
T 3mmy_A           84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ--IA--QHDAPVKTIHWIKAPNYSCVMTGS----WDKTLKF  155 (368)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EE--ECSSCEEEEEEEECSSCEEEEEEE----TTSEEEE
T ss_pred             cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee--ec--cccCceEEEEEEeCCCCCEEEEcc----CCCcEEE
Confidence            4889999999999999999999 9999999999765443  22  58999999999  55555566655    6899999


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeE--eccCCCceeeeeecCCCc--cEEEecC
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQI--ETVVNPTGLCDVSQNAGP--MVMACPG  155 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~l~~~g  155 (359)
                      ||+.+++.+..+.....+.++.+.++..+++ .++.+++|++.........  ........++++.++...  ..+++ +
T Consensus       156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  234 (368)
T 3mmy_A          156 WDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL-G  234 (368)
T ss_dssp             ECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE-E
T ss_pred             EECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE-e
Confidence            9999999999998777888888888766666 8999999999765433222  123344556666665543  22444 6


Q ss_pred             CCCeeEEEEecCC----eeeEEeecccc------------cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          156 LLKGQVRVEDYGT----KKSKYITAHAS------------RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       156 ~~d~~v~~~~~~~----~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      +.|+.|++|+.+.    .....+..|..            .|.+++|+|++++|++++.||. |++||+++++.+..+..
T Consensus       235 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          235 SIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             ETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCC
T ss_pred             cCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEecC
Confidence            6799999998876    34566777765            7999999999999999999999 99999999999999886


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                        |...|.+++|+|+|++|++++.|+..+.|++-..+
T Consensus       314 --~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          314 --LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             --CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             --CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence              77899999999999999999999876666655443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=4.3e-29  Score=218.21  Aligned_cols=231  Identities=14%  Similarity=0.251  Sum_probs=186.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|  ++++|++|+ ||.|++||+++++..  ..+. +|...+..+++.  ++.++.++    .|+.|++||
T Consensus       171 ~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~--~~~l~s~s----~dg~i~vwd  239 (435)
T 1p22_A          171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML--NTLI-HHCEAVLHLRFN--NGMMVTCS----KDRSIAVWD  239 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE--EEEC-CCCSCEEEEECC--TTEEEEEE----TTSCEEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE--EEEc-CCCCcEEEEEEc--CCEEEEee----CCCcEEEEe
Confidence            58899999999  788999999 999999999987655  4444 788888877764  56666666    789999999


Q ss_pred             CCCccEE---eeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYL---GELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~---~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      +.+++.+   ..+. |...|.++++..+-...+ .|+.|++||+++++.+..+..|...+.++.+.  ++  ++++ |+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~-g~~  314 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR--LVVS-GSS  314 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT--EEEE-EET
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CC--EEEE-EeC
Confidence            9887655   3444 889999999943322222 89999999999999999999988888777763  33  3555 667


Q ss_pred             CeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc---------EEEEeecCCCCcceE
Q 018248          158 KGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS---------LLQEMRRGAERAEIY  227 (359)
Q Consensus       158 d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~---------~~~~~~~~~~~~~i~  227 (359)
                      ||.|++|+.. +..+..+.+|...|.+++|  ++.+|++|+.||. |++||+.+++         .+..+..  |.+.|.
T Consensus       315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~~v~  389 (435)
T 1p22_A          315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVF  389 (435)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCC
T ss_pred             CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeeccC--CCCCeE
Confidence            9999999876 5778888999999999999  7889999999999 9999997766         7778876  778999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLKVDSG  257 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  257 (359)
                      +++|  ++++|++++.||.|++||+.+...
T Consensus       390 ~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          390 RLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             CEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             EEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            9999  788999999999999999988663

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=212.93  Aligned_cols=228  Identities=14%  Similarity=0.200  Sum_probs=170.7

Q ss_pred             ccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcc---------cceeee
Q 018248           60 FRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFT---------DLKLVD  128 (359)
Q Consensus        60 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~---------~~~~~~  128 (359)
                      ++++.++.++    .|+.|++||+.+++.+..+. ...|.++.++|+  ++.  .|++|++|+..         +++.+.
T Consensus        46 ~d~~~l~sg~----~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           46 YDKWVCMCRC----EDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             EEEEEEEEEE----ETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEC----CCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            3445555555    68999999999998888776 456778888887  333  78888888654         444444


Q ss_pred             eEe-ccCCCceeeeeec--CCCccEEEecCCCCeeEEEEecCCeee-EEe-ecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248          129 QIE-TVVNPTGLCDVSQ--NAGPMVMACPGLLKGQVRVEDYGTKKS-KYI-TAHASRIASIAMTLDGRFVATASSKGTLI  203 (359)
Q Consensus       129 ~~~-~~~~~~~~~~~~~--~~~~~~l~~~g~~d~~v~~~~~~~~~~-~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i  203 (359)
                      .+. .+...+..++++|  +++.  +++ ++.|+.|++|+...... ... ..+...+.+++|+|++.+|++|+.||. |
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~--l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i  194 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEY--FIW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-L  194 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCE--EEE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-E
T ss_pred             EeecCCCCCEEEEEcCCCCCCCE--EEE-EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-E
Confidence            444 4556788899999  6654  665 56899999999876443 333 345568999999999999999999999 9


Q ss_pred             EEEEcCCCcEE-EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          204 RVFNTMDGSLL-QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       204 ~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                      ++||+++++.+ ..+.. .|..+|++++|+|++.+|++++. +.|++||+++.+....                      
T Consensus       195 ~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~----------------------  250 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLA----------------------  250 (343)
T ss_dssp             EEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBS----------------------
T ss_pred             EEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCccee----------------------
Confidence            99999999887 67764 26789999999999999999994 5999999998763210                      


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcE--EEeeecccCCEEEEEec-CCeEEEEEeCCC
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQ--YLVGFGRQNNTIVIVGL-DGSYYKCEFDPM  339 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~  339 (359)
                                 +..      +..+...+  .+++|+|++++|++++. |+.+++|+++..
T Consensus       251 -----------~~~------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          251 -----------YPT------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -----------SCC------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             -----------ecc------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence                       000      00001111  46999999999999999 999999999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1e-27  Score=210.12  Aligned_cols=230  Identities=16%  Similarity=0.257  Sum_probs=193.1

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+  +.+|++|+ |+.|++||+++++..  ..+. +|...+.++.+  +++.++.++    .|+.|++||
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~--~~~~l~s~s----~dg~i~~wd  225 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI--HTLY-GHTSTVRCMHL--HEKRVVSGS----RDATLRVWD  225 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEE--ETTEEEEEE----TTSEEEEEE
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE--EEEC-CCCCcEEEEEe--cCCEEEEEe----CCCEEEEEE
Confidence            588999999998  56899998 999999999987554  4444 78888887776  467777766    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +.+++.+..+. |...|.++.+.  +..++   .|+.|++||+++++.+..+..|...+..+++  ++..  +++ |+.|
T Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~-~~~d  298 (445)
T 2ovr_B          226 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIH--VVS-GSLD  298 (445)
T ss_dssp             SSSCCEEEEEECCSSCEEEEEEC--SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSE--EEE-EETT
T ss_pred             CCCCcEEEEEcCCcccEEEEEEC--CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCE--EEE-EeCC
Confidence            99999998887 89999999993  44444   8999999999999999999988888877777  4443  555 5679


Q ss_pred             eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC-CCCcceEEEEecCCCC
Q 018248          159 GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG-AERAEIYSLAFSSNAQ  236 (359)
Q Consensus       159 ~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~  236 (359)
                      +.|++|+.. ++.+..+.+|...+.++.+  ++++|++++.||. |++||+++++.+..+... .|...|.+++|+  ++
T Consensus       299 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  373 (445)
T 2ovr_B          299 TSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN  373 (445)
T ss_dssp             SCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred             CeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC
Confidence            999998875 5677788899998888877  5679999999999 999999999999888752 266789999995  67


Q ss_pred             EEEEEcCCCcEEEEEccCCC
Q 018248          237 WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +|++++.||.|++||+.+++
T Consensus       374 ~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             EEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEeCCCeEEEEECCCCc
Confidence            99999999999999999876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.6e-27  Score=208.15  Aligned_cols=238  Identities=12%  Similarity=0.136  Sum_probs=194.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|+++++++++ |+.|++||+++++....  +. .|...+..++++++++.+++++.   .++.|++||
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~---~~~~i~~~d  240 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT--VD-LTGKWSKILLYDPIRDLVYCSNW---ISEDISVID  240 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CSSSSEEEEEEETTTTEEEEEET---TTTEEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE--Ec-CCCCCeeEEEEcCCCCEEEEEec---CCCcEEEEE
Confidence            4677999999999999999999 99999999987665533  33 57888999999999888766653   479999999


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE--e---------cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV--L---------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      +.+++.+..+.....+.+++|+|++..++  .         |+.|++||+.+++.+..+.. ...+..++|+|+++.+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          241 RKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             TTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-EECEEEEEECSSTTEEEE
T ss_pred             CCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-CCCcceEEECCCCCEEEE
Confidence            99999988888777799999999997666  2         67999999998887776643 345677899998876333


Q ss_pred             EecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC---------------CCCeEEEEEcCCCcEEEE
Q 018248          152 ACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---------------KGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------dg~~i~iwd~~~~~~~~~  216 (359)
                      +  +..++.|++|+...........+...+.+++|+|++++|++++.               ||. |++||+.+++.+..
T Consensus       320 ~--~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~~~  396 (433)
T 3bws_A          320 S--DMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVKEF  396 (433)
T ss_dssp             E--ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEEEE
T ss_pred             E--ecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcEEEE
Confidence            3  55799999999875444333347788999999999999888876               468 99999999999988


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEcC-CCcEEEEEccC
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASSD-KGTVHVFGLKV  254 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~  254 (359)
                      +..   ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       397 ~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          397 WEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            875   357899999999999988764 99999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.1e-28  Score=211.91  Aligned_cols=279  Identities=10%  Similarity=0.066  Sum_probs=204.7

Q ss_pred             CceEEEEEccCCC-EEEEec-----CC----ceEEEEc--CCCcceeeeecccCCCCceeEEEEecc-------------
Q 018248            7 ITIHHLALNQDHG-CFATGT-----ET----GFRVYLS--DPYKPIMRRDFDRNPRGGTQLVSMLFR-------------   61 (359)
Q Consensus         7 ~~v~~~~~s~~g~-~l~~~~-----d~----~i~iw~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------   61 (359)
                      ..+...+|++.|. ++++|+     +|    .+++||+  .+++......+. +|...+..+++.+.             
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            4677888888886 445664     46    7999999  887766555555 67776665555431             


Q ss_pred             -CCEEEEEecCCCCC---CeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ec---CeEEEEEcccceeeeeE
Q 018248           62 -SNIICLVNSGPHQS---NKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LN---QKVYVYNFTDLKLVDQI  130 (359)
Q Consensus        62 -~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d---~~i~i~d~~~~~~~~~~  130 (359)
                       +..+++++... .+   +.|++||+..+. ...+. |...+.+++|+|+++.++   .+   ..|++||+.+++.. .+
T Consensus       142 ~~~~l~~~s~~~-~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l  218 (415)
T 2hqs_A          142 FRTRIAYVVQTN-GGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV  218 (415)
T ss_dssp             TTCEEEEEEECS-SSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred             CCCEEEEEEecC-CCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence             55666666432 23   799999987544 44444 888999999999998887   33   49999999888765 45


Q ss_pred             eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CC--CeEEEEE
Q 018248          131 ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KG--TLIRVFN  207 (359)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~~i~iwd  207 (359)
                      ..+...+..++|+|+++.++++.....+..|++|+........+..|...+.+++|+|||++|++++. ++  . |++||
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~~d  297 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYKVN  297 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEEEE
Confidence            56677788999999998744333222234588888887777888888899999999999999988876 44  5 77789


Q ss_pred             cCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC---CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK---GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                      +.+++.. .+..  +...+.+++|+|||++|++++.+   ..|++||+.+++..                          
T Consensus       298 ~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--------------------------  348 (415)
T 2hqs_A          298 INGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--------------------------  348 (415)
T ss_dssp             TTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--------------------------
T ss_pred             CCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--------------------------
Confidence            8887643 3433  45688999999999999888764   57999999886511                          


Q ss_pred             EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCC---eEEEEEeC
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDG---SYYKCEFD  337 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~v~~~~  337 (359)
                              .         +..+ ..+..++|+|||+.|++++.++   .|++|+++
T Consensus       349 --------~---------l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          349 --------V---------LSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             --------E---------CCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             --------E---------ecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence                    0         0011 2567899999999999998876   67888765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=8.2e-28  Score=204.15  Aligned_cols=229  Identities=13%  Similarity=0.091  Sum_probs=174.1

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEccc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTD  123 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~  123 (359)
                      +|...|.+++|+++++.++.++     +..+++|++.+++......+. .+..+.+.+++..++    .|+.|++||+.+
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~-----~~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILST-----LKSFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEEC-----SSEEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             cCCCceEEEEECCCCCEEEEEc-----CCEEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            7899999999999999877654     346899999888776655433 477788888776554    678999999999


Q ss_pred             ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe--eeEEeecccccccEEEEccCCcEEEE--EeCC
Q 018248          124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK--KSKYITAHASRIASIAMTLDGRFVAT--ASSK  199 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~d  199 (359)
                      ++.+..+. +...+..++++++  ..+++    .++.|++|+....  .+..+..   +...+++++  .++++  |+.+
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~--~~~~~----~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~  158 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSRE--FIVVS----YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNL  158 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSS--EEEEE----ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCT
T ss_pred             CcEEEEEE-CCCceEEEEEcCC--EEEEE----EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcC
Confidence            99988887 4556777777654  33332    3778999988754  4444433   444566777  56666  5789


Q ss_pred             CCeEEEEEcCCCc---------------E-EEEeecCCCCcceEEEEecCCCCEEEEEcCCCc-EEEEEccCCCCCCCCC
Q 018248          200 GTLIRVFNTMDGS---------------L-LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGT-VHVFGLKVDSGSPGTS  262 (359)
Q Consensus       200 g~~i~iwd~~~~~---------------~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~  262 (359)
                      |. |++||+.+++               + +..+..  |...|++++|+|+|++|++++.|++ |+|||+++++..    
T Consensus       159 g~-v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~----  231 (355)
T 3vu4_A          159 GQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV----  231 (355)
T ss_dssp             TC-EEEEECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE----
T ss_pred             cE-EEEEECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----
Confidence            99 9999998865               1 556665  7889999999999999999999998 999999987621    


Q ss_pred             ccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe-e-cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          263 KLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR-L-PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                                            ..++ . +.+.|.+++|+|++++|++++.||.|++|++...
T Consensus       232 --------------------------------------~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          232 --------------------------------------REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             --------------------------------------EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             --------------------------------------EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence                                                  1122 2 5678999999999999999999999999999764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.1e-28  Score=199.37  Aligned_cols=175  Identities=11%  Similarity=0.097  Sum_probs=134.3

Q ss_pred             CCCeEEEEEC-CCccEEeeec-cCcceeEEEEec---ceeEEE---ecCeEEEEEcccceeeeeEeccCC---Cceeeee
Q 018248           74 QSNKVMIWDD-HENRYLGELS-FRSEVKNVRLRR---DRIVVV---LNQKVYVYNFTDLKLVDQIETVVN---PTGLCDV  142 (359)
Q Consensus        74 ~d~~i~iwd~-~~~~~~~~~~-~~~~v~~~~~~~---~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~  142 (359)
                      .|+.|++|++ .+++.+..+. |...+..++|++   ++.+++   .|++|+|||+++++.++++..+..   .+..++|
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            5899999999 5588888777 888999999999   667777   799999999999999999986543   3445689


Q ss_pred             ecCCCccEE---------EecCCCCeeEEEEecCCee-eEEe-----ecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          143 SQNAGPMVM---------ACPGLLKGQVRVEDYGTKK-SKYI-----TAHASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       143 ~~~~~~~~l---------~~~g~~d~~v~~~~~~~~~-~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      +|++..++.         +.+|+.|+++++|+..... +..+     .+|...+.+..+  ++.++++++.|++ |+|||
T Consensus       235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWD  311 (356)
T 2w18_A          235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWD  311 (356)
T ss_dssp             EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEE
T ss_pred             CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCc-EEEEE
Confidence            998764321         2347889999999877543 3333     255555443333  4789999999999 99999


Q ss_pred             cCCCcEEEEeecCCCCcc-eEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          208 TMDGSLLQEMRRGAERAE-IYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      +.+++++.++.+  |... +..++|||||++|++|+.|++|+|||+.
T Consensus       312 l~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          312 LLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            999999999986  4444 4468999999999999999999999963

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.5e-25  Score=199.74  Aligned_cols=281  Identities=11%  Similarity=0.109  Sum_probs=209.8

Q ss_pred             EEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC--CCccEE
Q 018248           13 ALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD--HENRYL   89 (359)
Q Consensus        13 ~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~--~~~~~~   89 (359)
                      +|+|++.+++++. ++.|.+||..+++.......  +|.  +..++++++++.+++++    .|+.|.+||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~~--~~~v~~spdg~~l~v~~----~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GYA--VHISRMSASGRYLLVIG----RDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--STT--EEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Ccc--cceEEECCCCCEEEEEC----CCCeEEEEECcCCCCcEE
Confidence            4889998888888 99999999998776543332  333  78889999999998888    6799999999  889999


Q ss_pred             eeeccCcceeEEEEec----ceeEEE----ecCeEEEEEcccceeeeeEecc-----------CCCceeeeeecCCCccE
Q 018248           90 GELSFRSEVKNVRLRR----DRIVVV----LNQKVYVYNFTDLKLVDQIETV-----------VNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        90 ~~~~~~~~v~~~~~~~----~~~~~~----~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  150 (359)
                      .++.+...+..++|+|    ++++++    .+++|.+||..+++++..+..+           ...+..+.+++++...+
T Consensus       216 ~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          216 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            8888777889999999    998776    5899999999999998888652           12456788888877543


Q ss_pred             EEecCCCCeeEEEEecCC-eeeE--EeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeecCC--CCc
Q 018248          151 MACPGLLKGQVRVEDYGT-KKSK--YITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRRGA--ERA  224 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~-~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~~~--~~~  224 (359)
                       ++ ...++.|.+|+... +.+.  .+ .+...+..++|+|+|+++++++ .++. |.+||+.+++++..+..+.  |.+
T Consensus       296 -vs-~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          296 -VN-VKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             -EE-ETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCT
T ss_pred             -EE-ECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCC
Confidence             33 55789999988754 2222  33 3566788999999999876655 5778 9999999999988887532  333


Q ss_pred             ceEEEEecCC-CCEEEEEc-CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248          225 EIYSLAFSSN-AQWLAASS-DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ  302 (359)
Q Consensus       225 ~i~~~~~s~~-~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (359)
                      ....+ ++|+ +..++++. .|++|.+||+.+.....                     ..+              ....+
T Consensus       372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------------------~~~--------------~~v~~  415 (543)
T 1nir_A          372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------------------YAW--------------KKVAE  415 (543)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------------------TBT--------------SEEEE
T ss_pred             CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------------------hcC--------------eEEEE
Confidence            33333 4677 66677765 68999999998843110                     000              01122


Q ss_pred             EeecCCcEEEeeecccCCEEEEEe-------cCCeEEEEEeCCCCC
Q 018248          303 FRLPENVQYLVGFGRQNNTIVIVG-------LDGSYYKCEFDPMKG  341 (359)
Q Consensus       303 ~~~~~~~v~~~~~s~~~~~l~~~~-------~dg~i~v~~~~~~~~  341 (359)
                      +..+.+.+..++|+||+++|++++       .+++|.+|++...+.
T Consensus       416 l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            444555667799999999999987       377999999986543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=4.9e-26  Score=212.05  Aligned_cols=279  Identities=8%  Similarity=-0.000  Sum_probs=202.2

Q ss_pred             CCceEEEEEccCCCEEEEec--CC-----ceEEEEcCCCcceeeeecccCCC----------------------CceeEE
Q 018248            6 PITIHHLALNQDHGCFATGT--ET-----GFRVYLSDPYKPIMRRDFDRNPR----------------------GGTQLV   56 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~-----~i~iw~~~~~~~~~~~~~~~~h~----------------------~~v~~~   56 (359)
                      ...|.+++|||||++|++++  |+     .|++||+++++........ ++.                      ..+..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK-VVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG-GTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh-hcccccccccchhhhhhhhhhhccccCccee
Confidence            56799999999999998877  56     7999999987654333321 122                      236788


Q ss_pred             EEeccCCEEEEEecCCCCCCeEEEEECCCc---cEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEe
Q 018248           57 SMLFRSNIICLVNSGPHQSNKVMIWDDHEN---RYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIE  131 (359)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~  131 (359)
                      +|+++++.+++++     ++.|++||+.++   +......+...+..++|+|||+.++  .++.|++||+.+++......
T Consensus       115 ~~SpDg~~l~~~~-----~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          115 QWSPDAQRLLFPL-----GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             EECTTSSEEEEEE-----TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             EECCCCCEEEEEe-----CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            9999999999887     389999999988   5444334778899999999999887  88899999998877655443


Q ss_pred             ccCCC----------------ceeeeeecCCCccEEEecCCCCe---------------------------------eEE
Q 018248          132 TVVNP----------------TGLCDVSQNAGPMVMACPGLLKG---------------------------------QVR  162 (359)
Q Consensus       132 ~~~~~----------------~~~~~~~~~~~~~~l~~~g~~d~---------------------------------~v~  162 (359)
                      .+...                +..++|+|+++.++++.   .|+                                 .|+
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~---~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR---IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE---EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEE---EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            33221                36689999998754443   222                                 566


Q ss_pred             EEecCC-eeeEEee---cccccccEEEEccCCcEEEEEeC-----CCCeEEEEEcCCCcEEEEeecCCCCc---ceEEEE
Q 018248          163 VEDYGT-KKSKYIT---AHASRIASIAMTLDGRFVATASS-----KGTLIRVFNTMDGSLLQEMRRGAERA---EIYSLA  230 (359)
Q Consensus       163 ~~~~~~-~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~-----dg~~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~  230 (359)
                      +|+..+ .....+.   .|...+..++| |||++|++++.     +.. |++||+.+++....+..+ ...   .+..++
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~  343 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHET-SPTWVPLHNSLR  343 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCSCCE
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcC-CCCcCCcCCceE
Confidence            677665 5444443   46778999999 99999987754     456 999999999887766542 112   346899


Q ss_pred             ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248          231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ  310 (359)
Q Consensus       231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (359)
                      |+|||+++++++.||.++||.++.....                                 +         .+..+...+
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~~~---------------------------------~---------~l~~~~~~v  381 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKGKA---------------------------------A---------ALTHGNWSV  381 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSSCE---------------------------------E---------ESCCSSSCE
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCCCe---------------------------------e---------eeeecceEE
Confidence            9999999999999998899988643200                                 0         011122345


Q ss_pred             EEe-eecccCCEEEEEec-CC--eEEEEEeCC
Q 018248          311 YLV-GFGRQNNTIVIVGL-DG--SYYKCEFDP  338 (359)
Q Consensus       311 ~~~-~~s~~~~~l~~~~~-dg--~i~v~~~~~  338 (359)
                      ..+ +|+||++.|++.+. ++  .+++|.++.
T Consensus       382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          382 DELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            555 69999988765554 55  899999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.4e-24  Score=193.60  Aligned_cols=283  Identities=11%  Similarity=0.051  Sum_probs=205.6

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEc--CCCcceeeeecccCCCCceeEEEEec----cCCEEEEEecCCCCCCeEEEE
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLS--DPYKPIMRRDFDRNPRGGTQLVSMLF----RSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~--~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.+++|+|||++|++++ |+.|++||+  .+++..  ..+.  +......+++++    +++.+++++.   .+++|.+|
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~--~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~  253 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIK--IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIM  253 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEE--CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE--EEEe--cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEE
Confidence            88999999999999999 999999999  665443  4443  355678889999    8888877663   36999999


Q ss_pred             ECCCccEEeeecc------------CcceeEEEEecceeEEE----ecCeEEEEEcccceeee--eEeccCCCceeeeee
Q 018248           82 DDHENRYLGELSF------------RSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVD--QIETVVNPTGLCDVS  143 (359)
Q Consensus        82 d~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~  143 (359)
                      |..+++++..+..            ...+..+.++|++..++    .++.|.+||..+.+.+.  .+. +......++|+
T Consensus       254 D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s  332 (543)
T 1nir_A          254 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD  332 (543)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC
T ss_pred             eccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceEC
Confidence            9999999888752            12688999999765444    78999999997765443  443 34456678999


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCC-eeeEEeec----ccccccEEEEccC-CcEEEEEe-CCCCeEEEEEcCC------
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITA----HASRIASIAMTLD-GRFVATAS-SKGTLIRVFNTMD------  210 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~----~~~~i~~~~~s~~-~~~l~~~~-~dg~~i~iwd~~~------  210 (359)
                      |+++.++++  +..+++|.+|+... +.+..+..    |.+....+ ++|+ +.+++++. .|++ |.+||+.+      
T Consensus       333 pdg~~l~va--~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~~~~  408 (543)
T 1nir_A          333 SSHRYFMTA--ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNHPQY  408 (543)
T ss_dssp             TTSCEEEEE--EGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCTTT
T ss_pred             CCCCEEEEE--ecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCCchh
Confidence            998864433  44578999987754 55555553    44333333 4677 66677775 5788 99999988      


Q ss_pred             -CcEEEEeecCCCCcceEEEEecCCCCEEEEEc-------CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          211 -GSLLQEMRRGAERAEIYSLAFSSNAQWLAASS-------DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       211 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                       ++.++++..  +...+..++++|+|++|++++       .+++|.|||+.+.+...                       
T Consensus       409 ~~~~v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~-----------------------  463 (543)
T 1nir_A          409 AWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY-----------------------  463 (543)
T ss_dssp             BTSEEEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC-----------------------
T ss_pred             cCeEEEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe-----------------------
Confidence             889999987  556788999999999999987       26799999999887321                       


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEe-----cCCeEEEEEeCC
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVG-----LDGSYYKCEFDP  338 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~v~~~~~  338 (359)
                               +.+... ....+.-+...+..++|+|||+.|+++.     .|+.|.||+..+
T Consensus       464 ---------~~~~v~-~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          464 ---------QVLPIA-EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             ---------EEECHH-HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             ---------EEeech-hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence                     000000 0000111234678899999999998773     379999997655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.5e-24  Score=182.49  Aligned_cols=280  Identities=10%  Similarity=0.070  Sum_probs=192.9

Q ss_pred             EEEccCCCE-EEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE-
Q 018248           12 LALNQDHGC-FATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY-   88 (359)
Q Consensus        12 ~~~s~~g~~-l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-   88 (359)
                      ..|.+++.+ ++++. ++.|.+||.++++.......   +.... .++++++++.+++++.   .++.|.+||+.+++. 
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~---~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSD---FCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEES---TTCEEEEEECSSSSCE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeC---CCCeEEEEECCCCcee
Confidence            356666666 45666 89999999998776544443   34555 8899999887777664   368999999999987 


Q ss_pred             EeeeccCcceeE-EEEecceeEEE---ec-C--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee-
Q 018248           89 LGELSFRSEVKN-VRLRRDRIVVV---LN-Q--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ-  160 (359)
Q Consensus        89 ~~~~~~~~~v~~-~~~~~~~~~~~---~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~-  160 (359)
                      ...+........ ++|+|++++++   .+ +  .|.+||+.+++.+..+..+. ....++|+|+++.++++.  ..++. 
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~--~~~~~~  152 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILID--RSSANT  152 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEE--ETTTTE
T ss_pred             EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEe--cCCCce
Confidence            666664444444 99999998776   33 3  89999999998888876544 347899999998744443  34566 


Q ss_pred             EEEEecCCee-e----EEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcE---EEEeecCCCCcceEEEEe
Q 018248          161 VRVEDYGTKK-S----KYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSL---LQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       161 v~~~~~~~~~-~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~  231 (359)
                      +.+|+.+... +    .........+..++|+|+|+++++++ .++. |.+||+.+++.   +..+..   ...+..++|
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~  228 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTIVV  228 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCEEE
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceEEE
Confidence            8887765311 1    12223345678999999999665555 5777 99999999988   777764   356789999


Q ss_pred             cCCCCEEEEEc-CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248          232 SSNAQWLAASS-DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ  310 (359)
Q Consensus       232 s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (359)
                      +|||++|++++ .++.|.+||+.+++..                          .+...     ...  +.....+....
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~~~~~~~--------------------------~~~~~-----~~~--~~~~~~~~~~~  275 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQLSGTLS--------------------------FVKSF-----GHG--LLIDPRPLFGA  275 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEETTTTEEE--------------------------EEEEE-----ECC--CCCCCGGGTTC
T ss_pred             CCCCCEEEEEEcCCCEEEEEECCCCcee--------------------------eeccc-----ccc--cccCCCCcccc
Confidence            99999776655 5778999999886521                          00000     000  00000011122


Q ss_pred             EEeeecccCCEEEEEec-CCeEEEEEeCC
Q 018248          311 YLVGFGRQNNTIVIVGL-DGSYYKCEFDP  338 (359)
Q Consensus       311 ~~~~~s~~~~~l~~~~~-dg~i~v~~~~~  338 (359)
                      ..++|+||+++|++++. ++.|.+|++..
T Consensus       276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          276 NQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             cceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            45899999999877766 66999999865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.3e-24  Score=186.63  Aligned_cols=226  Identities=13%  Similarity=0.064  Sum_probs=173.6

Q ss_pred             CCEEEEec-C------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           18 HGCFATGT-E------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        18 g~~l~~~~-d------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      +..++.++ +      +.|++||++....   ..+. +|...+..++|+|+++.+++++... .+..|++||+.+++...
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~-~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVH-RSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSC---EEEE-EESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCC---EEEe-CCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEEE
Confidence            56666655 4      6899999985432   2232 5788999999999999999888422 13599999999998876


Q ss_pred             eeccCcceeEEEEecceeEEE----e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe--eEE
Q 018248           91 ELSFRSEVKNVRLRRDRIVVV----L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG--QVR  162 (359)
Q Consensus        91 ~~~~~~~v~~~~~~~~~~~~~----~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~--~v~  162 (359)
                      ...+...+.+++|+|+|+.++    .  +..|++||+.+++. ..+..+...+..++|+|+++.+++.  +..++  .|+
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~--s~~~g~~~i~  294 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT--SDQAGRPQVY  294 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE--ECTTSSCEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE--ECCCCCcEEE
Confidence            555888999999999998666    2  34699999987765 4566667778889999998764333  32344  566


Q ss_pred             EEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          163 VEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      +|+..+.....+..+...+.+++|+|+|++|++++.+   .. |++||+.+++.. .+..  + ..+.+++|+|||++|+
T Consensus       295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~--~-~~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSS--T-FLDETPSLAPNGTMVI  369 (415)
T ss_dssp             EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCC--S-SSCEEEEECTTSSEEE
T ss_pred             EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecC--C-CCcCCeEEcCCCCEEE
Confidence            6787776667777777889999999999999988764   46 999999988774 4543  3 2799999999999999


Q ss_pred             EEcCCC---cEEEEEccCCC
Q 018248          240 ASSDKG---TVHVFGLKVDS  256 (359)
Q Consensus       240 ~~~~dg---~i~iw~~~~~~  256 (359)
                      +++.++   .|++||+..+.
T Consensus       370 ~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEETTEEEEEEEETTSCC
T ss_pred             EEEcCCCccEEEEEECCCCc
Confidence            888776   79999987544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.1e-23  Score=178.64  Aligned_cols=267  Identities=12%  Similarity=0.060  Sum_probs=200.2

Q ss_pred             CCceEEEEEccCCCEEEEec--------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            6 PITIHHLALNQDHGCFATGT--------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      ...+..++|+|+|+++++++        ++.|.+||.++++.......    ......++++++++.++++..   .++.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~---~~~~  112 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNT---VNSA  112 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEET---TTTE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEec---CCCE
Confidence            35678999999999998877        45799999998776544443    344677889999887776654   4689


Q ss_pred             EEEEECCCccEEeeeccC-c---------ceeEEEEecceeEEE--e---cCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248           78 VMIWDDHENRYLGELSFR-S---------EVKNVRLRRDRIVVV--L---NQKVYVYNFTDLKLVDQIETVVNPTGLCDV  142 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~~~-~---------~v~~~~~~~~~~~~~--~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (359)
                      |.+||..+++.+..+... .         .+.++.|+|++..++  .   ++.|.+||..+++.+..+..+......+++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            999999999988887632 1         278899999987655  2   688999999999988888745555678899


Q ss_pred             ecCCCccEEEecCCCCeeEEEEecCC-eeeEEeec----ccccccEEEEccCCcEEEEEeCC-CCeEEEEEcCCCcEEEE
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITA----HASRIASIAMTLDGRFVATASSK-GTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d-g~~i~iwd~~~~~~~~~  216 (359)
                      +|+++.++++   ..++.+.+|+... +....+..    +...+..++|+|+++++++++.+ +. |.+||..+++.+..
T Consensus       193 s~dg~~l~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEGKRLYTT---NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTTTEEEEE---CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCEEEE
T ss_pred             CCCCCEEEEE---cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcEEEE
Confidence            9998864443   2478899977654 44444443    45567789999999987777655 77 99999999999888


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS  295 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (359)
                      +..+.    ...++|+|+|+++++++ .++.|.+||+.+++..                                 ..  
T Consensus       269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------------~~--  309 (353)
T 3vgz_A          269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---------------------------------KT--  309 (353)
T ss_dssp             EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE---------------------------------EE--
T ss_pred             EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE---------------------------------EE--
Confidence            87531    25699999999665554 7899999999876511                                 00  


Q ss_pred             cccceeEEeecCCcEEEeeecccCCEEEEEecCCe
Q 018248          296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGS  330 (359)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  330 (359)
                             +.. ...+..++|+||+++|+++..++.
T Consensus       310 -------~~~-~~~~~~~~~s~dg~~l~v~~~~~~  336 (353)
T 3vgz_A          310 -------FDT-PTHPNSLALSADGKTLYVSVKQKS  336 (353)
T ss_dssp             -------EEC-CSEEEEEEECTTSCEEEEEEECCC
T ss_pred             -------Eec-CCCCCeEEEcCCCCEEEEEEcccc
Confidence                   111 135678999999998888887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=5.3e-24  Score=179.88  Aligned_cols=274  Identities=9%  Similarity=0.125  Sum_probs=186.4

Q ss_pred             EEEEec-CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC--Ccc--EEeeec
Q 018248           20 CFATGT-ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH--ENR--YLGELS   93 (359)
Q Consensus        20 ~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~   93 (359)
                      ++++++ ++.|++|+++. ++......+  .|...+..++++++++.+++++.   .++.|.+|++.  +++  .+..+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeeccccc
Confidence            344445 99999999963 322333333  36778888999999998887773   23899999987  554  344455


Q ss_pred             cCcceeEEEEecceeEEE----ecCeEEEEEc---ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec
Q 018248           94 FRSEVKNVRLRRDRIVVV----LNQKVYVYNF---TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY  166 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~~----~d~~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~  166 (359)
                      ....+..++|+|++..++    .++.|.+||+   ...+....+..+ ..+..++|+|+++.++++  +..++.|++|+.
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~~v~~~d~  158 (343)
T 1ri6_A           82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVP--ALKQDRICLFTV  158 (343)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEE--EGGGTEEEEEEE
T ss_pred             cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEe--cCCCCEEEEEEe
Confidence            445889999999998665    4789999999   444555555443 346778999998764333  335889999887


Q ss_pred             CC-eeeE-----Eeec-ccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCC--CcE--EEEeec---C-CCCcceEEEE
Q 018248          167 GT-KKSK-----YITA-HASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMD--GSL--LQEMRR---G-AERAEIYSLA  230 (359)
Q Consensus       167 ~~-~~~~-----~~~~-~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~--~~~--~~~~~~---~-~~~~~i~~~~  230 (359)
                      .. ..+.     .+.. ....+..++|+|++++|++++ .++. |.+|++..  ++.  ...+..   + .....+..++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  237 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  237 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence            65 3332     2222 234678899999999776555 7788 99999953  432  222221   1 1123677899


Q ss_pred             ecCCCCEEE-EEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc
Q 018248          231 FSSNAQWLA-ASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV  309 (359)
Q Consensus       231 ~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (359)
                      |+|+|++|+ +...++.|++|++......                        +..+.              .+... +.
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~------------------------~~~~~--------------~~~~~-~~  278 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITVFSVSEDGSV------------------------LSKEG--------------FQPTE-TQ  278 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCC------------------------EEEEE--------------EEECS-SS
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEcCCCCc------------------------eEEee--------------eecCC-Cc
Confidence            999999877 4557899999999842210                        00000              01111 23


Q ss_pred             EEEeeecccCCEEEEEe-cCCeEEEEEeCCCCC
Q 018248          310 QYLVGFGRQNNTIVIVG-LDGSYYKCEFDPMKG  341 (359)
Q Consensus       310 v~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~  341 (359)
                      +..++|+|++++|++++ .++.+.+|+++++.+
T Consensus       279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g  311 (343)
T 1ri6_A          279 PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  311 (343)
T ss_dssp             CCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             cceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence            67899999999999888 589999999987543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=5.2e-26  Score=195.77  Aligned_cols=216  Identities=14%  Similarity=0.113  Sum_probs=145.9

Q ss_pred             CCCCCceEEEEEcc--------CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC-EEEEEecCC
Q 018248            3 QPDPITIHHLALNQ--------DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN-IICLVNSGP   72 (359)
Q Consensus         3 ~~h~~~v~~~~~s~--------~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~   72 (359)
                      ..|.+.|.+++|+|        |+++||+|+ |++|+|||+.+...... .+  +|...+..++|+|++. .++.++   
T Consensus       133 ~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-~~--~~~~~v~~v~~~p~~~~~l~~~~---  206 (393)
T 4gq1_A          133 SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-GY--PLSSPGISVQFRPSNPNQLIVGE---  206 (393)
T ss_dssp             TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE-EE--ECSSCEEEEEEETTEEEEEEEEE---
T ss_pred             CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee-ec--CCCCCcEEEEECCCCCceEEecC---
Confidence            35899999999998        899999999 99999999986554432 22  5789999999998775 445444   


Q ss_pred             CCCCeEEEEECCCccEEeee--------------------------ccCcceeEEEEe-cceeEEE---ecCeEEEEEcc
Q 018248           73 HQSNKVMIWDDHENRYLGEL--------------------------SFRSEVKNVRLR-RDRIVVV---LNQKVYVYNFT  122 (359)
Q Consensus        73 ~~d~~i~iwd~~~~~~~~~~--------------------------~~~~~v~~~~~~-~~~~~~~---~d~~i~i~d~~  122 (359)
                       .|++|++||+.+++.....                          .|...+.++.|. +++..++   .|+++++||+.
T Consensus       207 -~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          207 -RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             -TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             -CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence             6899999999887544322                          145678888887 7887777   89999999998


Q ss_pred             cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc-CCcEEEEEeCCCC
Q 018248          123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL-DGRFVATASSKGT  201 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~  201 (359)
                      .++....+..+...+..+.+.|+...                         ...+...+..+.+.+ ++.++++|+.||.
T Consensus       286 ~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~  340 (393)
T 4gq1_A          286 ANNDYNEISDSTMKLGPKNLLPNVQG-------------------------ISLFPSLLGACPHPRYMDYFATAHSQHGL  340 (393)
T ss_dssp             ------------------CCSCSEEE-------------------------ECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred             cCCCCceEeeecCccccEEEcccccc-------------------------ccccCcceeEEEccCCCCEEEEEECCCCE
Confidence            88777666665555554444443221                         111222222333323 4557788889999


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                       |++||+.+++.+..+..  |..+|.+++|+|||++||+++.+| +.+|++..
T Consensus       341 -V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          341 -IQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             -EEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             -EEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence             99999999988877766  567999999999999999998776 77777643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2.1e-25  Score=207.19  Aligned_cols=288  Identities=8%  Similarity=0.027  Sum_probs=197.4

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCC---ceeEEEEeccCCEEEEEecCCC-----CCCe
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRG---GTQLVSMLFRSNIICLVNSGPH-----QSNK   77 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~~-----~d~~   77 (359)
                      ...+.+++|+|||++++++.|+.|++||+++++....  +. +|..   .+..++|+|+++.+++++....     .++.
T Consensus        16 ~~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~--~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           16 KIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVL--IE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEE--EC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEE--ec-cccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            3457889999999988774499999999998766533  32 3443   4889999999999988874221     2488


Q ss_pred             EEEEECCCccEEeeec----cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCc--------------
Q 018248           78 VMIWDDHENRYLGELS----FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPT--------------  137 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~--------------  137 (359)
                      +.+||+.+++. ..+.    +...+..++|+|||+.++  .++.|++||+.+++.......+...+              
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence            99999998876 3332    334588999999998887  78999999998877665554433322              


Q ss_pred             ----eeeeeecCCCccEEEecCC-------------------------------CCeeEEEEecCCee-eEEeecc----
Q 018248          138 ----GLCDVSQNAGPMVMACPGL-------------------------------LKGQVRVEDYGTKK-SKYITAH----  177 (359)
Q Consensus       138 ----~~~~~~~~~~~~~l~~~g~-------------------------------~d~~v~~~~~~~~~-~~~~~~~----  177 (359)
                          ..++|+|+++.++.+....                               .+..|++|+..+.. ...+..+    
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence                5789999998744433110                               02267788877654 3555543    


Q ss_pred             --cccccEEEEccCCcEEEEEeCC----CCeEEEEEcCCCcEEEEeecCCCCcce----EEEEecCCCCEEEE--EcCCC
Q 018248          178 --ASRIASIAMTLDGRFVATASSK----GTLIRVFNTMDGSLLQEMRRGAERAEI----YSLAFSSNAQWLAA--SSDKG  245 (359)
Q Consensus       178 --~~~i~~~~~s~~~~~l~~~~~d----g~~i~iwd~~~~~~~~~~~~~~~~~~i----~~~~~s~~~~~l~~--~~~dg  245 (359)
                        ...+..++|+|||++|++.+..    .. |++||+.+++....+..+ +...+    ..++|||||+.|+.  ...++
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence              5678999999999988776532    45 999999999877665432 23333    37899999997765  44566


Q ss_pred             ------cEEEEEccCCCC---CCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          246 ------TVHVFGLKVDSG---SPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       246 ------~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                            .|.+||+..+..   ..                             .+.   ..         +......++|+
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~~~-----------------------------~l~---~~---------~~~~~~~~~~s  368 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDNIQ-----------------------------SIT---SG---------DWDVTKILAYD  368 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCC-----------------------------BSC---CS---------SSCEEEEEEEE
T ss_pred             CCcceeEEEEEeccCCCCcccee-----------------------------Eee---cC---------CeEEEeeeEEc
Confidence                  455666322221   10                             000   00         01122346899


Q ss_pred             ccCCEEEEEecC---CeEEEEEeCCCC
Q 018248          317 RQNNTIVIVGLD---GSYYKCEFDPMK  340 (359)
Q Consensus       317 ~~~~~l~~~~~d---g~i~v~~~~~~~  340 (359)
                      |||+.|+..+.+   +.+++|.++...
T Consensus       369 pdg~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          369 EKGNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             TTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred             CCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence            999999877665   889999998643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=7.6e-24  Score=178.44  Aligned_cols=261  Identities=11%  Similarity=0.070  Sum_probs=189.7

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCC-ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRG-GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS   96 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~   96 (359)
                      ++|++++ ++.|++||+.+++......+  ++.. .+..++++++++.++++..   .++.|.+||+.+++.+..+....
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCC
Confidence            4677777 99999999998766544443  2221 4678889999887766654   46899999999999888776433


Q ss_pred             ------ceeEEEEecceeEEE-e--------------cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           97 ------EVKNVRLRRDRIVVV-L--------------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        97 ------~v~~~~~~~~~~~~~-~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                            .+..++|+|+++.++ .              ++.|.+||+.+++.+..+... ..+..++++|+++.++++   
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~---  152 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL---  152 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE---
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEe---
Confidence                  788999999997666 3              489999999988888777653 345678899998873332   


Q ss_pred             CCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCC------------------------CeEEEEEcCC
Q 018248          156 LLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKG------------------------TLIRVFNTMD  210 (359)
Q Consensus       156 ~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------------------------~~i~iwd~~~  210 (359)
                        ++.|++|+... +....+..+. ....+.|+|+++.++..+..+                        . |.+||+.+
T Consensus       153 --~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~~  228 (337)
T 1pby_B          153 --GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLET  228 (337)
T ss_dssp             --SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEETTT
T ss_pred             --CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc-eEEEeCCC
Confidence              56799988765 4444444333 112337899998776554433                        3 68999999


Q ss_pred             CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248          211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL  290 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (359)
                      ++.. .+....+...+.+++|+|||++|+++  ++.|++||+++++..                                
T Consensus       229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~--------------------------------  273 (337)
T 1pby_B          229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI--------------------------------  273 (337)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE--------------------------------
T ss_pred             CCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc--------------------------------
Confidence            8875 33332255678899999999999888  689999999876511                                


Q ss_pred             ceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          291 PKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                       ..         +.. ...+..++|+||+++|++++.++.|++|++..
T Consensus       274 -~~---------~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          274 -KR---------VPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             -EE---------EEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             -ce---------ecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence             00         111 12456899999999999999999999998765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=4.6e-24  Score=176.25  Aligned_cols=248  Identities=9%  Similarity=0.035  Sum_probs=183.0

Q ss_pred             CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC-ccEEeeec-c-CcceeEEE
Q 018248           26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE-NRYLGELS-F-RSEVKNVR  102 (359)
Q Consensus        26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~-~-~~~v~~~~  102 (359)
                      ++.|++||+.+++...  ..  .|...+..++|+++++.+++.+     ++.|++||+.+ ++...... + ...+.+++
T Consensus        21 ~~~i~~~d~~~~~~~~--~~--~~~~~v~~~~~spdg~~l~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRV--VW--QTPELFEAPNWSPDGKYLLLNS-----EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             CEEEEEEETTTTEEEE--EE--EESSCCEEEEECTTSSEEEEEE-----TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             ceeEEEEeCCCCceee--ec--cCCcceEeeEECCCCCEEEEEc-----CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            7889999998765442  22  4688899999999999888765     58999999999 87776665 3 47789999


Q ss_pred             EecceeEEE--e-----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEe--cCCeeeEE
Q 018248          103 LRRDRIVVV--L-----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED--YGTKKSKY  173 (359)
Q Consensus       103 ~~~~~~~~~--~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~--~~~~~~~~  173 (359)
                      |+|+++.++  .     ...|..+++.+++ ...+..+ ..+..++|+|+++.++++  +..++.+++|.  ........
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~--~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYC--GIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEE--EEETTEEEEEEEETTTCCEEE
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEE--ECCCCceEEEEEECCCCcceE
Confidence            999998887  2     2355555554444 3344333 346778899998764333  44678888876  44556677


Q ss_pred             eecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-------
Q 018248          174 ITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-------  244 (359)
Q Consensus       174 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------  244 (359)
                      +..+...+.+++|+|++++|++++ .++. +++|++. .+..+..+..  +...+..++|+|+|++|++++.+       
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            777888999999999999887766 5888 9999986 5556666665  55789999999999999888765       


Q ss_pred             ----CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCC
Q 018248          245 ----GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN  320 (359)
Q Consensus       245 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  320 (359)
                          +.|++||+++++...                                        ...+..+.+.+..++|+||++
T Consensus       245 ~~~~~~l~~~d~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~spdg~  284 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNVET----------------------------------------LFDLFGGQGTMNSPNWSPDGD  284 (297)
T ss_dssp             SSEEEEEEEEETTSCSCEE----------------------------------------EEEEEESTTTSCSCCBCTTSS
T ss_pred             ccCceEEEEEecCCCCcee----------------------------------------eeccCCCCcccccceECCCCC
Confidence                569999998765210                                        001122345678899999999


Q ss_pred             EEEEEecCC
Q 018248          321 TIVIVGLDG  329 (359)
Q Consensus       321 ~l~~~~~dg  329 (359)
                      .|++++.+.
T Consensus       285 ~l~~~~~~~  293 (297)
T 2ojh_A          285 EFAYVRYFP  293 (297)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            999888754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=2e-23  Score=193.45  Aligned_cols=275  Identities=11%  Similarity=0.044  Sum_probs=195.6

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC-
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE-   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-   85 (359)
                      ..|.+++|||| +.++.+.++.|++||+.+++...  ..  .+...+..++|+|+++.++++.     ++.|++||+.+ 
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~--l~--~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~  151 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTY--LF--DTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKL  151 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEE--EE--CCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCT
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEE--cc--CCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcc
Confidence            56999999999 77777778999999998765432  22  3466788889999999988854     69999999988 


Q ss_pred             ----ccEEeeec-cCcc--------------eeEEEEecceeEEE--e-c------------------------------
Q 018248           86 ----NRYLGELS-FRSE--------------VKNVRLRRDRIVVV--L-N------------------------------  113 (359)
Q Consensus        86 ----~~~~~~~~-~~~~--------------v~~~~~~~~~~~~~--~-d------------------------------  113 (359)
                          ++...... ....              +.++.|+|||+.++  . |                              
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence                77665544 2222              58999999998887  2 1                              


Q ss_pred             ---CeEEEEEcccceeeeeEe--ccCCCceeeeeecCCCccEEEecCC--CCeeEEEEecCCe-eeEEeec--ccc---c
Q 018248          114 ---QKVYVYNFTDLKLVDQIE--TVVNPTGLCDVSQNAGPMVMACPGL--LKGQVRVEDYGTK-KSKYITA--HAS---R  180 (359)
Q Consensus       114 ---~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~--~d~~v~~~~~~~~-~~~~~~~--~~~---~  180 (359)
                         ..|++||+.+++......  .+...+..++|+|+++.++++....  ....|++|+.... ....+..  +..   .
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence               579999998887644432  2445567899999998644433111  1247888887765 5444432  222   2


Q ss_pred             ccEEEEcc--CCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEE-EEecCCCCEEEEEcC-CC----cEEEEE
Q 018248          181 IASIAMTL--DGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYS-LAFSSNAQWLAASSD-KG----TVHVFG  251 (359)
Q Consensus       181 i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~-dg----~i~iw~  251 (359)
                      +..++|+|  ||+++++++.++. ++||++. +++.+..+..  +...+.+ ++|+|+|+.|+.++. ++    .|..||
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             cCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            46789999  9999999999998 9999886 6777777765  4556776 799999998765554 44    455556


Q ss_pred             ccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecC---
Q 018248          252 LKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLD---  328 (359)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---  328 (359)
                      +.++...                                  .         + .+...+..++|+|||++|+..+.+   
T Consensus       389 ~~~~~~~----------------------------------~---------l-~~~~~~~~~~~spdg~~l~~~~~~~~~  424 (706)
T 2z3z_A          389 IKGGKTK----------------------------------D---------L-TPESGMHRTQLSPDGSAIIDIFQSPTV  424 (706)
T ss_dssp             TTCCCCE----------------------------------E---------S-CCSSSEEEEEECTTSSEEEEEEECSSC
T ss_pred             cCCCCce----------------------------------e---------c-cCCCceEEEEECCCCCEEEEEecCCCC
Confidence            5554311                                  0         0 022356789999999998877654   


Q ss_pred             -CeEEEEEeCC
Q 018248          329 -GSYYKCEFDP  338 (359)
Q Consensus       329 -g~i~v~~~~~  338 (359)
                       +.+++|+++.
T Consensus       425 p~~i~l~d~~~  435 (706)
T 2z3z_A          425 PRKVTVTNIGK  435 (706)
T ss_dssp             SCEEEEEESSS
T ss_pred             CcEEEEEECCC
Confidence             5699998764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=3.6e-24  Score=193.93  Aligned_cols=268  Identities=10%  Similarity=0.026  Sum_probs=186.6

Q ss_pred             CCceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecC-CCCCCeEEE--
Q 018248            6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG-PHQSNKVMI--   80 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~d~~i~i--   80 (359)
                      ..+|++++|+|||+.||+++  |++++||++++++..   .+...+...+..+.|+++  .+++.+.. . .+....+  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~---~lt~~~~~~~~~~~~spd--~~l~~~~~~~-g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV---KLNREPINSVLDPHYGVG--RVILVRDVSK-GAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE---ECCSSCCSEECEECTTCS--EEEEEEECST-TSCCEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE---eeecccccccccccCCCC--eEEEEeccCC-CCcceEEEE
Confidence            45799999999999999876  899999998654332   222123357788888876  44443321 1 2344455  


Q ss_pred             EEC-CCccEEeeeccCcceeEEEEeccee--EEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           81 WDD-HENRYLGELSFRSEVKNVRLRRDRI--VVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        81 wd~-~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ++. ..+... .+.....+...+|+|++.  .++  .++.+.+||+.+++.......+.   ..++++|+++.  +++ +
T Consensus        95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~--la~-~  167 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDL--IAG-L  167 (582)
T ss_dssp             EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTE--EEE-E
T ss_pred             EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCE--EEE-E
Confidence            454 123322 444333344667888774  344  55666699998887655544332   67889999987  443 2


Q ss_pred             CCC----eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC--CeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248          156 LLK----GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG--TLIRVFNTMDGSLLQEMRRGAERAEIYSL  229 (359)
Q Consensus       156 ~~d----~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  229 (359)
                      +.+    +.|++|+..+...+.+..|...+..++|||||+.|+++..++  . |++||+.+++.. .+..  +...+..+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~  243 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSY  243 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHH
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhh
Confidence            223    678889887777778888989999999999999999888888  7 999999998877 5544  44556666


Q ss_pred             E--------ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee
Q 018248          230 A--------FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA  301 (359)
Q Consensus       230 ~--------~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (359)
                      +        |+|||.++++++.++.+++|++  ++..                                           
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~-------------------------------------------  278 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV-------------------------------------------  278 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE-------------------------------------------
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee-------------------------------------------
Confidence            6        9999999999999999999999  3310                                           


Q ss_pred             EEeecCCcEEEeeecccCCEEEEEecCCe-EEEEEeCC
Q 018248          302 QFRLPENVQYLVGFGRQNNTIVIVGLDGS-YYKCEFDP  338 (359)
Q Consensus       302 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~v~~~~~  338 (359)
                        +.+.+.+..++|+ |++.+++++.+.. -.+|.++.
T Consensus       279 --~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          279 --EAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             --CCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             --ccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence              0123466789999 9999988887644 34455554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=8.7e-24  Score=195.81  Aligned_cols=235  Identities=11%  Similarity=0.080  Sum_probs=164.4

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCcc--eeeeeccc-------------CCCCceeEEEEeccCCEEEEEecC
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP--IMRRDFDR-------------NPRGGTQLVSMLFRSNIICLVNSG   71 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~-------------~h~~~v~~~~~~~~~~~~~~~~~~   71 (359)
                      .+..+.|.  |..+++++ ++ | +||+.+++.  ........             .+...+..++++++ +.+++..  
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~--   99 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT--   99 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE--
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE--
Confidence            35567788  55666666 66 8 999998766  33222100             01146888999998 6666654  


Q ss_pred             CCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEccc-----ceeeeeEeccCCC--------
Q 018248           72 PHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTD-----LKLVDQIETVVNP--------  136 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~-----~~~~~~~~~~~~~--------  136 (359)
                         ++.|++||+.+++......+...+.+++|+|+|+.++  .++.|++||+.+     ++.......+...        
T Consensus       100 ---~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A          100 ---QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             ---TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             ---CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence               5999999999988776666777899999999998887  899999999987     7655443333222        


Q ss_pred             ------ceeeeeecCCCccEEEec------------------------------CCCCeeEEEEecCCeeeEEee---cc
Q 018248          137 ------TGLCDVSQNAGPMVMACP------------------------------GLLKGQVRVEDYGTKKSKYIT---AH  177 (359)
Q Consensus       137 ------~~~~~~~~~~~~~~l~~~------------------------------g~~d~~v~~~~~~~~~~~~~~---~~  177 (359)
                            +..++|+|+++.++++..                              ...+..|++|+..+.....+.   .|
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  367899999987443320                              013467888888775544443   46


Q ss_pred             cccccEEEEccCCcEEEEEeCCC-----CeEEEEEcCCCcEEEEeecCCCCc---ceEEEEecC--CCCEEEEEcCCCcE
Q 018248          178 ASRIASIAMTLDGRFVATASSKG-----TLIRVFNTMDGSLLQEMRRGAERA---EIYSLAFSS--NAQWLAASSDKGTV  247 (359)
Q Consensus       178 ~~~i~~~~~s~~~~~l~~~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~--~~~~l~~~~~dg~i  247 (359)
                      ...+.+++|+|||++|++++.++     . |++||+.+++....+....+..   .+.+++|+|  ||++|++++.|+.+
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~  335 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN  335 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence            67789999999999999887765     7 9999999984443333211222   246789999  99999999999999


Q ss_pred             EEEEcc
Q 018248          248 HVFGLK  253 (359)
Q Consensus       248 ~iw~~~  253 (359)
                      +||.++
T Consensus       336 ~l~~~~  341 (706)
T 2z3z_A          336 HLYLYD  341 (706)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.9e-23  Score=194.58  Aligned_cols=275  Identities=9%  Similarity=0.044  Sum_probs=195.9

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ..|.+++|||||++|++++++.|++|+++++.  ..  ..+. .|...+..++|+|+++.+++++     ++.|++||+.
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~--~~l~-~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~  180 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV--RQLT-HGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLA  180 (741)
T ss_dssp             EESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC--CBCC-CSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETT
T ss_pred             cCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE--EEcc-cCCcccccccCCCCCCEEEEEe-----CCcEEEEecC
Confidence            34889999999999999999999999998762  22  2232 4677899999999999998887     4699999999


Q ss_pred             CccEEeeec-cCcc----------------eeEEEEecceeEEE---ecC------------------------------
Q 018248           85 ENRYLGELS-FRSE----------------VKNVRLRRDRIVVV---LNQ------------------------------  114 (359)
Q Consensus        85 ~~~~~~~~~-~~~~----------------v~~~~~~~~~~~~~---~d~------------------------------  114 (359)
                      +++...... +...                +..+.|+|||+.++   .|+                              
T Consensus       181 ~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          181 SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             CCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            887765544 2221                47899999998777   444                              


Q ss_pred             ---eEEEEEccc-ceeeeeEe--ccCCCceeeeeecCCCccEEEec--CCCCeeEEEEecCCeee-EEeecccc----cc
Q 018248          115 ---KVYVYNFTD-LKLVDQIE--TVVNPTGLCDVSQNAGPMVMACP--GLLKGQVRVEDYGTKKS-KYITAHAS----RI  181 (359)
Q Consensus       115 ---~i~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~--g~~d~~v~~~~~~~~~~-~~~~~~~~----~i  181 (359)
                         .|++||+.+ ++......  .+...+..++| |+++.+++...  +..+..|++|+...... ..+..+..    .+
T Consensus       261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  339 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH  339 (741)
T ss_dssp             CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence               889999987 76543332  24455677899 99887544432  23467788888765443 33444432    45


Q ss_pred             cEEEEccCCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEEE-EecCCCCEEE-EEcCCC--cEEEEEccCCC
Q 018248          182 ASIAMTLDGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSL-AFSSNAQWLA-ASSDKG--TVHVFGLKVDS  256 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~-~~~~dg--~i~iw~~~~~~  256 (359)
                      ..++|+|||+++++++.+|. ++||.+. +++ ...+..  +...+..+ .|+|+|+.|+ +++.++  .++||++....
T Consensus       340 ~~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g  415 (741)
T 2ecf_A          340 NSLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG  415 (741)
T ss_dssp             SCCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred             CceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence            78999999999999999998 8888775 455 666665  45678887 5999999775 455555  89999997533


Q ss_pred             CCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecC----CeEE
Q 018248          257 GSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLD----GSYY  332 (359)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~  332 (359)
                      ...                                +.         +.. .+.+..++|+||++.|+....+    +.++
T Consensus       416 ~~~--------------------------------~~---------l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~  453 (741)
T 2ecf_A          416 GQP--------------------------------QR---------LSK-APGMHSASFARNASVYVDSWSNNSTPPQIE  453 (741)
T ss_dssp             CCC--------------------------------EE---------CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             CCe--------------------------------ee---------ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEE
Confidence            110                                00         000 2345689999999998877654    4677


Q ss_pred             EEEe
Q 018248          333 KCEF  336 (359)
Q Consensus       333 v~~~  336 (359)
                      +++.
T Consensus       454 l~~~  457 (741)
T 2ecf_A          454 LFRA  457 (741)
T ss_dssp             EEET
T ss_pred             EEEc
Confidence            7765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2.6e-23  Score=200.15  Aligned_cols=272  Identities=10%  Similarity=0.099  Sum_probs=203.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...+.+++|+++ .+++++. ++.++||.++...... ..+. .|. .+...+|+++++.+++..     ++.|++|+
T Consensus       201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~-~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d  271 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL-RKHT-SFT-DYYPRHLNTDGRRILFSK-----GGSIYIFN  271 (1045)
T ss_dssp             CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC-EECC-CCC-SSCEEEEEESSSCEEEEE-----TTEEEEEC
T ss_pred             CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc-eEec-CCC-CcceeeEcCCCCEEEEEe-----CCEEEEec
Confidence            47788999999998 5666666 8899999876422221 2232 233 456779999999888764     68999999


Q ss_pred             CCCccEEeeecc------------CcceeEEEEe-cceeEEE--ecCeEEEEEcccceeeeeEeccCC-CceeeeeecCC
Q 018248           83 DHENRYLGELSF------------RSEVKNVRLR-RDRIVVV--LNQKVYVYNFTDLKLVDQIETVVN-PTGLCDVSQNA  146 (359)
Q Consensus        83 ~~~~~~~~~~~~------------~~~v~~~~~~-~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~  146 (359)
                      +...+. ..+..            ...+.+++|+ |+|+.++  .++.|++|++.+++... +..+.. .+..++|+ ++
T Consensus       272 ~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg  348 (1045)
T 1k32_A          272 PDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TK  348 (1045)
T ss_dssp             TTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SE
T ss_pred             CCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CC
Confidence            854433 34432            2368999999 9998777  88999999997776443 444555 66778888 66


Q ss_pred             CccEEEecCCCCeeEE-EEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          147 GPMVMACPGLLKGQVR-VEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                      +.  +++.+ .++.+. +|+..+.....+..|...+..++|+|||++|++++.++. |++||+.+++....+..  |...
T Consensus       349 ~~--l~~~s-~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~~~~  422 (1045)
T 1k32_A          349 VA--FIHGT-REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--REAM  422 (1045)
T ss_dssp             EE--EEEEE-TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--SSSC
T ss_pred             Ce--EEEEE-CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--CCCC
Confidence            65  44322 377888 888877766667778889999999999999999999999 99999999988777755  6678


Q ss_pred             eEEEEecCCCCEEEEEcCCC----------cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248          226 IYSLAFSSNAQWLAASSDKG----------TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS  295 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~dg----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (359)
                      +.+++|||||++|++++.++          .|++||+.+++..                                     
T Consensus       423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-------------------------------------  465 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-------------------------------------  465 (1045)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-------------------------------------
T ss_pred             ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE-------------------------------------
Confidence            89999999999998887654          8999999875410                                     


Q ss_pred             cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                            .+..+...+..++|+|||+.|++++.++...+|..
T Consensus       466 ------~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          466 ------AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             ------ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ------EeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence                  01112345667899999999999999887777753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=4.5e-22  Score=168.48  Aligned_cols=273  Identities=13%  Similarity=0.146  Sum_probs=176.7

Q ss_pred             CCceEEEEcCC--CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-cCcceeE
Q 018248           26 ETGFRVYLSDP--YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-FRSEVKN  100 (359)
Q Consensus        26 d~~i~iw~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~  100 (359)
                      ++.|.+|.++.  ++.......  .+......++++++++ +++++... .++.|.+|++.+++  .+..+. +...+..
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLL--AATQNPTYLALSAKDC-LYSVDKED-DEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE--EECSCCCCEEECTTCE-EEEEEEET-TEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCEEEEEEcCCCCeEEEeeee--eccCCcceEEEccCCe-EEEEEecC-CCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            45688888764  332222222  3456677789999888 55555311 36899999997665  333433 6678899


Q ss_pred             EEEecceeEEE----ecCeEEEEEcc-cc--eeeeeEeccC---------CCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248          101 VRLRRDRIVVV----LNQKVYVYNFT-DL--KLVDQIETVV---------NPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus       101 ~~~~~~~~~~~----~d~~i~i~d~~-~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      ++|+|++++++    .++.|.+|++. ++  +.+..+....         ..+..++++|+++ + +++ +..++.|.+|
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l-~v~-~~~~~~v~~~  167 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-L-AVI-DLGSDKVYVY  167 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-E-EEE-ETTTTEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-E-EEE-eCCCCEEEEE
Confidence            99999998666    46899999995 22  3333332211         1255689999988 3 343 4457889998


Q ss_pred             ecC-CeeeE---Eeecc-cccccEEEEccCCcEEEEE-eCCCCeEEEEEcCC--CcE--EEEeecCCC----CcceEEEE
Q 018248          165 DYG-TKKSK---YITAH-ASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMD--GSL--LQEMRRGAE----RAEIYSLA  230 (359)
Q Consensus       165 ~~~-~~~~~---~~~~~-~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~--~~~--~~~~~~~~~----~~~i~~~~  230 (359)
                      +.. ...+.   .+..+ ...+..++|+|||++|+++ ..++. |.+|++..  ++.  +..+.....    ...+..++
T Consensus       168 ~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  246 (347)
T 3hfq_A          168 NVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR  246 (347)
T ss_dssp             EECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred             EECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence            876 22222   22222 2357789999999977665 45677 99999874  543  223322111    13588999


Q ss_pred             ecCCCCEEE-EEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc
Q 018248          231 FSSNAQWLA-ASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV  309 (359)
Q Consensus       231 ~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (359)
                      |+|||++|+ +...++.|.+|++.....                         +..+              ..+..+...
T Consensus       247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~-------------------------~~~~--------------~~~~~~~~~  287 (347)
T 3hfq_A          247 LSHDGHFLYVSNRGYNTLAVFAVTADGH-------------------------LTLI--------------QQISTEGDF  287 (347)
T ss_dssp             ECTTSCEEEEEEETTTEEEEEEECGGGC-------------------------EEEE--------------EEEECSSSC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEECCCCc-------------------------EEEe--------------EEEecCCCC
Confidence            999999874 555689999999974321                         0000              011222334


Q ss_pred             EEEeeecccCCEEEEEec-CCeEEEEEeCCCCCCceEE
Q 018248          310 QYLVGFGRQNNTIVIVGL-DGSYYKCEFDPMKGGEMHQ  346 (359)
Q Consensus       310 v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~  346 (359)
                      +..++|+|||++|++++. ++.+.+|+++.+++ +...
T Consensus       288 ~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg-~l~~  324 (347)
T 3hfq_A          288 PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG-KLSL  324 (347)
T ss_dssp             CCEEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEE
T ss_pred             cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC-eEEe
Confidence            678999999999988886 48999999987654 4443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=8.2e-23  Score=196.68  Aligned_cols=277  Identities=9%  Similarity=-0.043  Sum_probs=208.4

Q ss_pred             CCCceEEEEEc-cCCCEEEEecCCceEEEEcCCCcceeeeecccCCCC-ceeEEEEeccCCEEEEEecCCCCCCeEE-EE
Q 018248            5 DPITIHHLALN-QDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRG-GTQLVSMLFRSNIICLVNSGPHQSNKVM-IW   81 (359)
Q Consensus         5 h~~~v~~~~~s-~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~d~~i~-iw   81 (359)
                      |...|.+++|| |||++|++++++.+.+|+...++..   .+. .|.. .+..++|+ +++.+++++    .+..+. +|
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~---~~~-~~~~~~~~~~~~s-dg~~l~~~s----~~~~l~~~~  364 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KVP-EPLRIRYVRRGGD-TKVAFIHGT----REGDFLGIY  364 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE---ECS-CCSCEEEEEECSS-SEEEEEEEE----TTEEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE---Ecc-CCCcceEEeeeEc-CCCeEEEEE----CCCceEEEE
Confidence            34579999999 9999999998999999999865432   232 4566 77888888 777788777    457888 99


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC---
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG---  155 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---  155 (359)
                      ++.+++......+...+..++|+|+++.++   .++.|++||+.+++....+..+...+..++|+|+++.++.+...   
T Consensus       365 d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~  444 (1045)
T 1k32_A          365 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG  444 (1045)
T ss_dssp             ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             ECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence            988776554444668899999999998887   67899999999988877777788888899999999864333211   


Q ss_pred             ----CCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE------------------
Q 018248          156 ----LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL------------------  213 (359)
Q Consensus       156 ----~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~------------------  213 (359)
                          ..++.|++|+..+.....+..|...+..++|+|||++|+.++.++. ..+|+......                  
T Consensus       445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSP  523 (1045)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred             cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC-CcCcchhccccccccCceeEEEEeCCCCC
Confidence                1236899999887667788888888999999999999999998777 77776433221                  


Q ss_pred             -------------------------EEEeecCCCCcceEEEEecCCCCEEEE-------------EcCCCcEEEEEccCC
Q 018248          214 -------------------------LQEMRRGAERAEIYSLAFSSNAQWLAA-------------SSDKGTVHVFGLKVD  255 (359)
Q Consensus       214 -------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~-------------~~~dg~i~iw~~~~~  255 (359)
                                               +..+..  +.+.+..++++|||+++++             ......|.+||+.++
T Consensus       524 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~  601 (1045)
T 1k32_A          524 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR  601 (1045)
T ss_dssp             CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred             CccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence                                     111111  3467889999999987775             122446788888776


Q ss_pred             CCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          256 SGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      +..                                 ...             ..+..++|||||+.|++++.+ .+++|+
T Consensus       602 ~~~---------------------------------~l~-------------~~v~~~~~S~DG~~l~~~~~~-~i~~~d  634 (1045)
T 1k32_A          602 KVT---------------------------------EVK-------------NNLTDLRLSADRKTVMVRKDD-GKIYTF  634 (1045)
T ss_dssp             CEE---------------------------------EEE-------------EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred             cEE---------------------------------Eee-------------cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence            511                                 000             245678999999999998877 799999


Q ss_pred             eCCCC
Q 018248          336 FDPMK  340 (359)
Q Consensus       336 ~~~~~  340 (359)
                      +....
T Consensus       635 ~~~~~  639 (1045)
T 1k32_A          635 PLEKP  639 (1045)
T ss_dssp             ESSCT
T ss_pred             CccCc
Confidence            97643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=4.1e-23  Score=170.55  Aligned_cols=234  Identities=9%  Similarity=-0.048  Sum_probs=172.1

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCC-CcceeeeecccCC-CCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDP-YKPIMRRDFDRNP-RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~-~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      |...|.+++|+|+|++|+++.++.|++||+++ ++....  .. +| ...+..++|+++++.+++++........|..++
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~  116 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKV--DT-GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP  116 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEEC--CC-TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEe--cc-ccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence            57789999999999999999999999999987 655422  22 33 467788999999998888773311135566666


Q ss_pred             CCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcc-cceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      ..+++ ...+.....+..++|+|+++.++    .++.+++|++. .......+..+...+..++|+|+++.  +++++..
T Consensus       117 ~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~  193 (297)
T 2ojh_A          117 STGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW--IYFNSSR  193 (297)
T ss_dssp             TTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSE--EEEEECT
T ss_pred             CCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCE--EEEEecC
Confidence            66555 34455444588999999998665    68888999863 22334455556667788999998876  3333435


Q ss_pred             CeeEEEEec--CCeeeEEeecccccccEEEEccCCcEEEEEeCC-----------CCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          158 KGQVRVEDY--GTKKSKYITAHASRIASIAMTLDGRFVATASSK-----------GTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       158 d~~v~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      ++.+++|..  .+.....+..|...+.+++|+|+|++|++++.+           +. |++||+.+++.........+..
T Consensus       194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~  272 (297)
T 2ojh_A          194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNVETLFDLFGGQG  272 (297)
T ss_dssp             TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSCEEEEEEEESTT
T ss_pred             CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCceeeeccCCCCc
Confidence            777888654  456677788888889999999999999888765           56 9999998886543332111567


Q ss_pred             ceEEEEecCCCCEEEEEcCCC
Q 018248          225 EIYSLAFSSNAQWLAASSDKG  245 (359)
Q Consensus       225 ~i~~~~~s~~~~~l~~~~~dg  245 (359)
                      .+.+++|+|++++|++++.+.
T Consensus       273 ~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          273 TMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TSCSCCBCTTSSEEEEEEECC
T ss_pred             ccccceECCCCCEEEEEEecc
Confidence            899999999999998887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=4.4e-22  Score=168.05  Aligned_cols=239  Identities=13%  Similarity=0.114  Sum_probs=170.0

Q ss_pred             CCCceEEEEEccCCCEEEEec-C-CceEEEEcC--CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT-E-TGFRVYLSD--PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d-~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +...+.+++|+|+|++|++++ + +.|.+|+++  +++......+. . ...+..++++++++.+++++.   .++.|.+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~---~~~~i~~  110 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-L-PGSLTHISTDHQGQFVFVGSY---NAGNVSV  110 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-C-SSCCSEEEECTTSSEEEEEET---TTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-c-CCCCcEEEEcCCCCEEEEEec---CCCeEEE
Confidence            556788999999999888877 4 899999998  44443333443 2 237788899999988877664   3689999


Q ss_pred             EEC---CCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEccc-ceeee----eEec-cCCCceeeeeecCCC
Q 018248           81 WDD---HENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTD-LKLVD----QIET-VVNPTGLCDVSQNAG  147 (359)
Q Consensus        81 wd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~----~~~~-~~~~~~~~~~~~~~~  147 (359)
                      ||+   .+.+.+..+.....+.+++|+|+++.++    .++.|++||+.+ ++...    .+.. .......++|+|+++
T Consensus       111 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             EECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence            998   4445566666556789999999997665    579999999976 54432    2222 223456788999887


Q ss_pred             ccEEEecCCCCeeEEEEecCC--ee---eEEeec---c---cccccEEEEccCCcEEEEEe-CCCCeEEEEEcC--CC--
Q 018248          148 PMVMACPGLLKGQVRVEDYGT--KK---SKYITA---H---ASRIASIAMTLDGRFVATAS-SKGTLIRVFNTM--DG--  211 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~--~~---~~~~~~---~---~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~--~~--  211 (359)
                      .++++  +..++.+.+|+.+.  ..   ...+..   .   ...+..++|+|+|++|+++. .++. |.+||+.  ++  
T Consensus       191 ~l~~~--~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~~~  267 (343)
T 1ri6_A          191 YAYCV--NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSVL  267 (343)
T ss_dssp             EEEEE--ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCCE
T ss_pred             EEEEE--eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCCce
Confidence            54333  44688999988743  21   222221   1   23456899999999887554 6888 9999998  33  


Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccC
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKV  254 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~  254 (359)
                      +.+..+..  + ..+..++|+|+|++|++++ .++.|.+|+++.
T Consensus       268 ~~~~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          268 SKEGFQPT--E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEEEEEEC--S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEeeeecC--C-CccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            34444543  2 3488999999999888887 679999997764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=6.2e-22  Score=166.73  Aligned_cols=239  Identities=10%  Similarity=0.007  Sum_probs=179.1

Q ss_pred             ceEEEEEccCCCEEE-Eec-CCceEEEEcCCCcceeeeecccC---CCCceeEEEEeccCCEEEEEecC------CC--C
Q 018248            8 TIHHLALNQDHGCFA-TGT-ETGFRVYLSDPYKPIMRRDFDRN---PRGGTQLVSMLFRSNIICLVNSG------PH--Q   74 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~-~~~-d~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~------~~--~   74 (359)
                      .+.+++|+|+|++++ ++. ++.|.+||+.+++........ .   |...+..++++++++.++++..+      ..  .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC-CcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence            478899999998764 455 789999999887665433331 1   11256678899998887776411      00  1


Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      ++.|.+||+.+++.+..+.....+.+++|+|+++.++ .++.|++||+.+++....+..+... ....++|++..+++. 
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~-  191 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQ-  191 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCC-
T ss_pred             CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeee-
Confidence            5899999999998888887667788999999998666 8899999999999888777654311 234788888764332 


Q ss_pred             cCCCCe-----------------------eEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          154 PGLLKG-----------------------QVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       154 ~g~~d~-----------------------~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                       +..++                       .|.+|+.......  .+..+...+.+++|+|+|++++++  ++. |.+||+
T Consensus       192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~  267 (337)
T 1pby_B          192 -HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDL  267 (337)
T ss_dssp             -CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEET
T ss_pred             -ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEEC
Confidence             32333                       3566776654332  234455678899999999999888  677 999999


Q ss_pred             CCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          209 MDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+++.+..+..+   ..+.+++|+|+|++|++++.++.|++||+++++
T Consensus       268 ~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          268 EKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             TTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            999988887742   467899999999999999999999999999876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=7.7e-22  Score=165.89  Aligned_cols=241  Identities=10%  Similarity=0.123  Sum_probs=168.9

Q ss_pred             CCceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC--eEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN--KVMIW   81 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~--~i~iw   81 (359)
                      ...+ +++|+|+|+++++++  ++.|.+||+++++... ..+. .+..+...++++++++.++ ++..  .++  .|.+|
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~-~~~~~~~~~~~s~dg~~l~-~~~~--~~~~~~i~v~  113 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV-VAIQ-EGQSSMADVDITPDDQFAV-TVTG--LNHPFNMQSY  113 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE-EEEE-ECSSCCCCEEECTTSSEEE-ECCC--SSSSCEEEEE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE-Eecc-cCCCCccceEECCCCCEEE-EecC--CCCcccEEEE
Confidence            3455 999999999765554  7899999998876511 2222 3444544489999999888 4432  123  99999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE----ecCe-EEEEEcccceee----eeEeccCCCceeeeeecCCCccEEE
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQK-VYVYNFTDLKLV----DQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~-i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      |+.+++.+..+.......+++|+|+++.++    .++. |.+|++.....+    ............++++|+++.++++
T Consensus       114 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          114 SFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             ETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             ECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence            999999988888777789999999997444    3467 999998643222    1111223445778999998764443


Q ss_pred             ecCCCCeeEEEEecCC-ee---eEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcE--EEEeecC--CCC
Q 018248          153 CPGLLKGQVRVEDYGT-KK---SKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSL--LQEMRRG--AER  223 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~-~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~--~~~~~~~--~~~  223 (359)
                        +..++.|.+|+... +.   +..+.. ...+..++|+|+|++|++++ .++. |.+||+.+++.  +..+...  .+.
T Consensus       194 --~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~  269 (331)
T 3u4y_A          194 --NLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLIDP  269 (331)
T ss_dssp             --ETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCCCC
T ss_pred             --eCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeecccccccccCC
Confidence              44688999988764 43   455543 46778999999999777665 4667 99999999877  4444322  112


Q ss_pred             c---ceEEEEecCCCCEEEEEc-CCCcEEEEEccCCC
Q 018248          224 A---EIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDS  256 (359)
Q Consensus       224 ~---~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~  256 (359)
                      .   ....++|+|||++|++++ .++.|.+||+....
T Consensus       270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            2   225589999999886554 56799999998754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=3.8e-21  Score=163.03  Aligned_cols=243  Identities=12%  Similarity=0.077  Sum_probs=184.5

Q ss_pred             CCceeEEEEeccCCEEEEEecCCC---CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcc
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPH---QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFT  122 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~  122 (359)
                      ...+..++++++++.+++.+.+..   .++.|.+||..+++.+..+.....+..++|+|+++.++    .++.|.+||..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            456778899999888877764320   15799999999999999888777789999999987544    56899999999


Q ss_pred             cceeeeeEeccCCC---------ceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcE
Q 018248          123 DLKLVDQIETVVNP---------TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRF  192 (359)
Q Consensus       123 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~  192 (359)
                      +++.+..+..+...         ...++++|+++.++++. ...++.|.+|+... +....+..+...+..++|+|+|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG-IGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE-ESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe-cCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            99988887664322         46689999988755443 23578899988765 455555546666899999999999


Q ss_pred             EEEEeCCCCeEEEEEcCCCcEEEEeecCC--CCcceEEEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCC
Q 018248          193 VATASSKGTLIRVFNTMDGSLLQEMRRGA--ERAEIYSLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASE  269 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~  269 (359)
                      |++++.++. |.+||..+++.+..+..+.  +...+..++|+|++++|++++. ++.|.+||+.+++..           
T Consensus       199 l~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-----------  266 (353)
T 3vgz_A          199 LYTTNADGE-LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL-----------  266 (353)
T ss_dssp             EEEECTTSE-EEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-----------
T ss_pred             EEEEcCCCe-EEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-----------
Confidence            999999999 9999999999888776421  2446888999999997766654 589999999886611           


Q ss_pred             CCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEe-cCCeEEEEEeCC
Q 018248          270 PNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVG-LDGSYYKCEFDP  338 (359)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~~~  338 (359)
                                            ..         +..+.  ...++|+|+++.+++++ .++.|.+|+...
T Consensus       267 ----------------------~~---------~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          267 ----------------------AK---------VAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             ----------------------EE---------EECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             ----------------------EE---------EEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence                                  00         11111  24689999999777766 589999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.9e-22  Score=184.60  Aligned_cols=240  Identities=10%  Similarity=0.015  Sum_probs=164.4

Q ss_pred             ceEEEEEccCCCEEEEec-C---------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            8 TIHHLALNQDHGCFATGT-E---------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d---------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      .|.+++|||||++|++++ +         +.+.+||+++++........ +|...+..++|+|+++.+++++     ++.
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~la~~~-----~~~  135 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIF-----ENN  135 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEE-----TTE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccccccEECCCCCEEEEEE-----CCe
Confidence            489999999999999887 4         66889999987653222221 4455588899999999999887     379


Q ss_pred             EEEEECCCccEEeeec-cCcce------------------eEEEEecceeEEE---ecC---------------------
Q 018248           78 VMIWDDHENRYLGELS-FRSEV------------------KNVRLRRDRIVVV---LNQ---------------------  114 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~-~~~~v------------------~~~~~~~~~~~~~---~d~---------------------  114 (359)
                      |++||+.+++...... +...+                  .+++|+|||+.++   .++                     
T Consensus       136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence            9999999887766554 23323                  7899999998877   222                     


Q ss_pred             -------------eEEEEEcccceeeeeEecc------CCCceeeeeecCCCccEEEe-cCCCCeeEEEEecCCeee-EE
Q 018248          115 -------------KVYVYNFTDLKLVDQIETV------VNPTGLCDVSQNAGPMVMAC-PGLLKGQVRVEDYGTKKS-KY  173 (359)
Q Consensus       115 -------------~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~-~g~~d~~v~~~~~~~~~~-~~  173 (359)
                                   .|++||+.+++....+..+      ...+..++|+|+++.++... .+..+..|++|+...... ..
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence                         7999999887755555443      34566789999987432221 122346788888765443 33


Q ss_pred             eec-cccccc----EEEEccCCcEEEE--EeCCC------CeEEEEE-cCCCc--EEEEeecCCCCcceEE-EEecCCCC
Q 018248          174 ITA-HASRIA----SIAMTLDGRFVAT--ASSKG------TLIRVFN-TMDGS--LLQEMRRGAERAEIYS-LAFSSNAQ  236 (359)
Q Consensus       174 ~~~-~~~~i~----~~~~s~~~~~l~~--~~~dg------~~i~iwd-~~~~~--~~~~~~~~~~~~~i~~-~~~s~~~~  236 (359)
                      +.. +...+.    .++|+|||+.|+.  +..++      . |.+|| ..+++  ....+..  +...+.. ++|+|||+
T Consensus       296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~  372 (723)
T 1xfd_A          296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGN  372 (723)
T ss_dssp             EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTT
T ss_pred             EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCC
Confidence            333 334443    8899999997765  44566      4 66677 33443  1444443  2234554 69999999


Q ss_pred             EEEEEcCC---CcEEEEEccCCC
Q 018248          237 WLAASSDK---GTVHVFGLKVDS  256 (359)
Q Consensus       237 ~l~~~~~d---g~i~iw~~~~~~  256 (359)
                      .|+..+.+   +.++||++....
T Consensus       373 ~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          373 KIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             EEEEEESSSCTTCCEEEEECSST
T ss_pred             EEEEEEcCCCCcceEEEEEeCCC
Confidence            98766554   789999997643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=3.9e-21  Score=162.73  Aligned_cols=240  Identities=16%  Similarity=0.202  Sum_probs=162.8

Q ss_pred             CCceEEEEEccCCCEEEEec---CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT---ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ...+..++|+|||++++++.   ++.|.+|++++++......+. .+...+..++++++++.+++++.   .++.|.+|+
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~---~~~~v~v~~  114 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANY---HKGTAEVMK  114 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEET---TTTEEEEEE
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeC---CCCEEEEEE
Confidence            34567799999999444443   478999999766543333322 35677888999999998877764   368999999


Q ss_pred             CCC-c--cEEeeeccC----------cceeEEEEecceeEEE---ecCeEEEEEcc-cceeee--eEecc-CCCceeeee
Q 018248           83 DHE-N--RYLGELSFR----------SEVKNVRLRRDRIVVV---LNQKVYVYNFT-DLKLVD--QIETV-VNPTGLCDV  142 (359)
Q Consensus        83 ~~~-~--~~~~~~~~~----------~~v~~~~~~~~~~~~~---~d~~i~i~d~~-~~~~~~--~~~~~-~~~~~~~~~  142 (359)
                      +.. +  +.+..+.+.          ..+.+++|+|++++++   .++.|.+|++. +++...  .+... ......++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            853 3  233333321          2478899999998555   57899999997 454322  22222 224456899


Q ss_pred             ecCCCccEEEecCCCCeeEEEEecCC--ee---eEEeeccc------ccccEEEEccCCcEEEE-EeCCCCeEEEEEcCC
Q 018248          143 SQNAGPMVMACPGLLKGQVRVEDYGT--KK---SKYITAHA------SRIASIAMTLDGRFVAT-ASSKGTLIRVFNTMD  210 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~~v~~~~~~~--~~---~~~~~~~~------~~i~~~~~s~~~~~l~~-~~~dg~~i~iwd~~~  210 (359)
                      +|+++.++++  +..++.+.+|+.+.  ..   ...+....      ..+..++|+|||++|++ ...++. |.+|++..
T Consensus       195 spdg~~l~v~--~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~  271 (347)
T 3hfq_A          195 SPDGQYAFLA--GELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTA  271 (347)
T ss_dssp             CTTSSEEEEE--ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECG
T ss_pred             CCCCCEEEEE--eCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECC
Confidence            9998764443  44578899877653  22   22222222      34788999999998754 456788 99999873


Q ss_pred             -C--cEEEEeecCCCCcceEEEEecCCCCEEEEEcC-CCcEEEEEccC
Q 018248          211 -G--SLLQEMRRGAERAEIYSLAFSSNAQWLAASSD-KGTVHVFGLKV  254 (359)
Q Consensus       211 -~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~  254 (359)
                       +  +.+..+..  +...+..++|+|||++|++++. ++.|.+|+++.
T Consensus       272 ~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          272 DGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence             2  44445543  3456889999999998888765 48999997654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=1.1e-21  Score=168.78  Aligned_cols=286  Identities=10%  Similarity=-0.049  Sum_probs=183.3

Q ss_pred             EEEccCCCEEEEec--CCc--eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248           12 LALNQDHGCFATGT--ETG--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus        12 ~~~s~~g~~l~~~~--d~~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      .+|||||++|+.++  ++.  |.+||+++++..  .... +|...+....|+++++.+++++    .++.|++||+.+++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~-~~~~~~~~~~~spdg~~l~~~~----~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTE-GRGDNTFGGFLSPDDDALFYVK----DGRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--ECCC-SSCBCSSSCEECTTSSEEEEEE----TTTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--Eeee-CCCCCccceEEcCCCCEEEEEe----CCCeEEEEECCCCc
Confidence            78999999998877  453  777888776543  2222 4444444568999999999988    56899999999998


Q ss_pred             EEeeec-cCcceeEE--EEecceeEEE-------------------------ecCeEEEEEcccceeeeeEeccCCCcee
Q 018248           88 YLGELS-FRSEVKNV--RLRRDRIVVV-------------------------LNQKVYVYNFTDLKLVDQIETVVNPTGL  139 (359)
Q Consensus        88 ~~~~~~-~~~~v~~~--~~~~~~~~~~-------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (359)
                      ....+. +...+...  .++|++..++                         .+..|++||+.+++... +..+...+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~  192 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGH  192 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEE
T ss_pred             ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccc
Confidence            776666 33434333  3488887775                         12679999998886544 3344556778


Q ss_pred             eeeec-CCCccEEEecCCC---CeeEEEEecCCeeeEEeeccc--ccccEEEEccCCcEEEEEeC-C----CCeEEEEEc
Q 018248          140 CDVSQ-NAGPMVMACPGLL---KGQVRVEDYGTKKSKYITAHA--SRIASIAMTLDGRFVATASS-K----GTLIRVFNT  208 (359)
Q Consensus       140 ~~~~~-~~~~~~l~~~g~~---d~~v~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~-d----g~~i~iwd~  208 (359)
                      ++|+| +++.++++..+..   ...|.+++..+...+.+..+.  ..+..++|+|||+.|+..+. +    .. |++||+
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-l~~~d~  271 (388)
T 3pe7_A          193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF-IYSADP  271 (388)
T ss_dssp             EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE-EEEECT
T ss_pred             cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce-EEEEec
Confidence            89999 8876444442211   336777777776666666554  35778999999997765443 2    24 899999


Q ss_pred             CCCcEEEEeecCCCCcc---eEEEEecCCCCEEEEE---------cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248          209 MDGSLLQEMRRGAERAE---IYSLAFSSNAQWLAAS---------SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKN  276 (359)
Q Consensus       209 ~~~~~~~~~~~~~~~~~---i~~~~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
                      .+++.........+...   ...++|+|||+.|+..         ..+..|++||+.+++..                  
T Consensus       272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------------  333 (388)
T 3pe7_A          272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH------------------  333 (388)
T ss_dssp             TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE------------------
T ss_pred             CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE------------------
Confidence            98875432221100000   1123799999988754         44668999999876511                  


Q ss_pred             CCceeeeeEeeeecceEEecccceeEEe-ecCCcEEEeeecccCCEEEEEec-CCeEEEEEeCCC
Q 018248          277 SSAISSFRFIRGVLPKYFSSKWSMAQFR-LPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDPM  339 (359)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~  339 (359)
                                     ........+..+. .+...+..++|+|||+.|+..+. +|...+|.++..
T Consensus       334 ---------------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          334 ---------------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             ---------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             ---------------EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence                           0000000000000 00013567899999998887775 788888887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=2.1e-20  Score=159.15  Aligned_cols=284  Identities=12%  Similarity=0.105  Sum_probs=180.6

Q ss_pred             ccCCCEEEEec-----CCceEEEEcCC--CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--
Q 018248           15 NQDHGCFATGT-----ETGFRVYLSDP--YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--   85 (359)
Q Consensus        15 s~~g~~l~~~~-----d~~i~iw~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--   85 (359)
                      .+...++++|+     ++.|.+|.++.  ++.......   +......++++++++.+++++.....++.|.+|++..  
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence            34445666663     46799998753  433332222   4667778899999998888774210137999998765  


Q ss_pred             ccE--Eeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeE---ecc-----------CCCceeeeeec
Q 018248           86 NRY--LGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQI---ETV-----------VNPTGLCDVSQ  144 (359)
Q Consensus        86 ~~~--~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~---~~~-----------~~~~~~~~~~~  144 (359)
                      ++.  +.... +......+++  ++..++    .++.|.+|++.....+..+   ..+           ...+..++|+|
T Consensus        87 g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp  164 (361)
T 3scy_A           87 GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP  164 (361)
T ss_dssp             TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred             CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence            433  33333 4456777777  555444    5789999999643322211   111           11225689999


Q ss_pred             CCCccEEEecCCCCeeEEEEecCCee-------e-------EEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcC
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGTKK-------S-------KYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTM  209 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~~~-------~-------~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~  209 (359)
                      +++.++++  +..++.+.+|+.+...       +       .....+...+..++|+|||+++++++ .++. |.+||+.
T Consensus       165 dg~~l~~~--~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~  241 (361)
T 3scy_A          165 DGKYLLAD--DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYA  241 (361)
T ss_dssp             TSSEEEEE--ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEE
T ss_pred             CCCEEEEE--eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEec
Confidence            98864443  4457789998665321       1       11223345678999999999888777 5777 9999998


Q ss_pred             CCcE--EEEeecC-CCCcceEEEEecCCCCEEEEEcC--CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          210 DGSL--LQEMRRG-AERAEIYSLAFSSNAQWLAASSD--KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       210 ~~~~--~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                      +++.  +..+... .+...+..++|+|||++|+++..  ++.|.+|++......                        +.
T Consensus       242 ~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~------------------------~~  297 (361)
T 3scy_A          242 DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT------------------------LT  297 (361)
T ss_dssp             TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC------------------------EE
T ss_pred             CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc------------------------EE
Confidence            7754  2333221 12245789999999999876665  488999999743210                        00


Q ss_pred             EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEe-cCCeEEEEEeCCCCCCceEE
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVG-LDGSYYKCEFDPMKGGEMHQ  346 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~  346 (359)
                      .+.              .+.. ...+..++|+|||++|++++ .++.|.+|.++.+.+ ++..
T Consensus       298 ~~~--------------~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g-~~~~  344 (361)
T 3scy_A          298 KVG--------------YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG-LLTD  344 (361)
T ss_dssp             EEE--------------EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC-CEEE
T ss_pred             Eee--------------EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC-cEee
Confidence            000              0111 23456899999999999888 579999999987653 4443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=1.1e-20  Score=159.87  Aligned_cols=228  Identities=11%  Similarity=0.056  Sum_probs=167.5

Q ss_pred             EEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE
Q 018248           11 HLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL   89 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~   89 (359)
                      .++++++++++++++ ++.|++||+.+++.......  +....+..++++++++.++++..   .++.|.+||+.+++.+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEE
Confidence            456788899998888 99999999998765543333  22225678889998887666553   4699999999999888


Q ss_pred             eeecc-------CcceeEEEEecceeEEE---e------------cCeEEEEEccccee---eeeEeccCCCceeeeeec
Q 018248           90 GELSF-------RSEVKNVRLRRDRIVVV---L------------NQKVYVYNFTDLKL---VDQIETVVNPTGLCDVSQ  144 (359)
Q Consensus        90 ~~~~~-------~~~v~~~~~~~~~~~~~---~------------d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~  144 (359)
                      ..+..       ...+..++|+|+++.++   .            ++.|.+||+.+++.   +..+.. ...+..++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~  157 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD  157 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT
T ss_pred             EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECC
Confidence            77763       23378999999998777   3            39999999987543   333333 33467788999


Q ss_pred             CCCccEEEecCCCCeeEEEEecCC-eeeEEeeccc---------------------------------------------
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHA---------------------------------------------  178 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~---------------------------------------------  178 (359)
                      +++ ++ +. +   +.|.+|+... +....+..+.                                             
T Consensus       158 dg~-l~-~~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          158 DGS-LY-VA-G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             TSC-EE-EE-S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCc-EE-Ec-c---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            987 33 33 2   2377777643 3333332221                                             


Q ss_pred             -----------------------ccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          179 -----------------------SRIASIAMTL-DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       179 -----------------------~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                                             ..+..++|+| ++++++++  ++. |.+||+.+++.+..+..+   ..+.+++|+|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s~d  305 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANLD---HTYYCVAFDKK  305 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEECS---SCCCEEEECSS
T ss_pred             ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcCC---CCccceEECCC
Confidence                                   1345677889 99999888  777 999999999988887642   35779999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCC
Q 018248          235 AQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |++|++++.++.|++||+++++
T Consensus       306 g~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          306 GDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             SSCEEEESBSSEEEEEETTTTE
T ss_pred             CCEEEEecCCCeEEEEeccccc
Confidence            9998888889999999998865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=3.5e-22  Score=185.47  Aligned_cols=242  Identities=9%  Similarity=-0.012  Sum_probs=162.4

Q ss_pred             EEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCC---ceeEEEEeccCCEEEEEecCC-----CCCCeEEEE
Q 018248           10 HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRG---GTQLVSMLFRSNIICLVNSGP-----HQSNKVMIW   81 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~-----~~d~~i~iw   81 (359)
                      .+++|+|||++++++.|+.|++||+.+++......   +|..   .+..++|+|+++.+++++...     ..++.|++|
T Consensus        19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILS---NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC---HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc---cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            37899999976666669999999999876543222   2222   378899999999998887310     015899999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEe-ccCC-----------------Cceeee
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIE-TVVN-----------------PTGLCD  141 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~-----------------~~~~~~  141 (359)
                      |+.+++.+........+..++|+|||+.++  .++.|++|++.+++...... ++..                 ....++
T Consensus        96 d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           96 DLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             ETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             ECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            999988742223346688999999998887  89999999998776543321 1111                 114789


Q ss_pred             eecCCCccEEEecCC-------------------------------CCeeEEEEecCCeee---EE------eecccccc
Q 018248          142 VSQNAGPMVMACPGL-------------------------------LKGQVRVEDYGTKKS---KY------ITAHASRI  181 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~-------------------------------~d~~v~~~~~~~~~~---~~------~~~~~~~i  181 (359)
                      |+|+++.++.++...                               ....|++|+..+...   ..      +..|...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            999998744433100                               112677788776442   11      23577789


Q ss_pred             cEEEEccCCcEEEEEeCC----CCeEEEEE----cCCCcEEEEee---cCCCCcceE-----EEEecCCCCEEEE--EcC
Q 018248          182 ASIAMTLDGRFVATASSK----GTLIRVFN----TMDGSLLQEMR---RGAERAEIY-----SLAFSSNAQWLAA--SSD  243 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~d----g~~i~iwd----~~~~~~~~~~~---~~~~~~~i~-----~~~~s~~~~~l~~--~~~  243 (359)
                      ..++|+||++++++....    .. |.+||    ..+++....+.   .. +...+.     .+.|+|||+.|+.  ...
T Consensus       256 ~~~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          256 SWLTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEES-RTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEEC-SSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             EEeEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEeccccc-CCceEccccCCccEECCCCCeEEEEEEcc
Confidence            999999998877774422    24 88899    77776544331   11 445565     7899999996544  445


Q ss_pred             CCc--EEEEEccCCC
Q 018248          244 KGT--VHVFGLKVDS  256 (359)
Q Consensus       244 dg~--i~iw~~~~~~  256 (359)
                      +|.  |.+|++.+++
T Consensus       334 ~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          334 DGYKHIHYIKDTVEN  348 (719)
T ss_dssp             TSCEEEEEESSCSTT
T ss_pred             CCceEEEEEECCCCc
Confidence            664  5566665543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=4.1e-21  Score=173.91  Aligned_cols=230  Identities=10%  Similarity=0.019  Sum_probs=166.9

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC-cceeEEEEecceeEEE-e-----cCeEEEEEcc
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR-SEVKNVRLRRDRIVVV-L-----NQKVYVYNFT  122 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-~-----d~~i~i~d~~  122 (359)
                      ..++..++++++++.+++++.   .|++++||++.+++..+...+. ..+..++|+|+ ++++ .     +....+|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~---~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGF---SEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEE---ETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEc---cCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            567899999999999998873   2799999998666655544455 68999999999 6555 2     2445565543


Q ss_pred             c---ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC
Q 018248          123 D---LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK  199 (359)
Q Consensus       123 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  199 (359)
                      .   +... .+.. .......+|+|+++..++++ +..++ +.+|+..+.....+..+..  .+++|||||++|++++.+
T Consensus        97 ~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s-~~~~~-~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A           97 TSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTG-ATEDR-VALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             TTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEE-ECSSC-EEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEE
T ss_pred             ccCCCccc-cccC-CCCceeeeeCCCCCeEEEEe-cCCCC-ceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEc
Confidence            2   3222 3322 22345679999999877765 44444 4488877665555554444  899999999999988776


Q ss_pred             ----CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC--cEEEEEccCCCCCCCCCccccCCCCCcc
Q 018248          200 ----GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG--TVHVFGLKVDSGSPGTSKLHSASEPNLS  273 (359)
Q Consensus       200 ----g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~  273 (359)
                          +. |++||+.+++.. .+..  +...+..++|||||++|+++..++  .|++||+++++..               
T Consensus       171 ~~~~~~-i~~~d~~~g~~~-~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---------------  231 (582)
T 3o4h_A          171 GGGRVS-LFTSNLSSGGLR-VFDS--GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---------------  231 (582)
T ss_dssp             ETTEEE-EEEEETTTCCCE-EECC--SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---------------
T ss_pred             CCCCeE-EEEEcCCCCCce-Eeec--CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---------------
Confidence                67 999999888765 4444  567889999999999999888888  8999999876511               


Q ss_pred             CCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee--------ecccCCEEEEEecCCeEEEEEe
Q 018248          274 SKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG--------FGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                                         .         +..+...+..++        |+|||..+++++.||.+++|.+
T Consensus       232 -------------------~---------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          232 -------------------D---------LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             -------------------E---------CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             -------------------E---------ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                               0         001112223334        9999988899999999999987

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=6.1e-20  Score=155.30  Aligned_cols=227  Identities=11%  Similarity=0.062  Sum_probs=160.0

Q ss_pred             EeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc--ceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEe
Q 018248           58 MLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS--EVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIE  131 (359)
Q Consensus        58 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~  131 (359)
                      +..++..++..+    .++.|.+||+.+++.+..+....  .+..++|+|+++.++    .++.|.+||+.+++.+..+.
T Consensus         7 ~~~~~~~~v~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            7 LKAGHEYMIVTN----YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCTTCEEEEEEE----TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCEEEEEeC----CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            333344444444    57999999999999988887544  688999999997544    57899999999998887776


Q ss_pred             ccCC------CceeeeeecCCCccEEEecC---------CCCeeEEEEecCC----eeeEEeecccccccEEEEccCCcE
Q 018248          132 TVVN------PTGLCDVSQNAGPMVMACPG---------LLKGQVRVEDYGT----KKSKYITAHASRIASIAMTLDGRF  192 (359)
Q Consensus       132 ~~~~------~~~~~~~~~~~~~~~l~~~g---------~~d~~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~  192 (359)
                      ....      .+..++++|+++.++++...         ..++.|.+|+...    +.+..+. +...+.+++|+|+|+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence            4322      25678999998864443310         0137899988764    2223333 334688999999999 


Q ss_pred             EEEEeCCCCeEEEEEcCCCcEEEEeecCCC--------------------------------------------------
Q 018248          193 VATASSKGTLIRVFNTMDGSLLQEMRRGAE--------------------------------------------------  222 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~--------------------------------------------------  222 (359)
                      ++++  ++. |.+||..+++.+..+..+..                                                  
T Consensus       161 l~~~--~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          161 LYVA--GPD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             EEEE--SSS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             EEEc--cCc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence            5555  345 99999999988777654210                                                  


Q ss_pred             ----------------CcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeE
Q 018248          223 ----------------RAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRF  285 (359)
Q Consensus       223 ----------------~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (359)
                                      ...+..++|+| ++++|+++  ++.|.+||+.+++..                           
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~---------------------------  288 (349)
T 1jmx_B          238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI---------------------------  288 (349)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE---------------------------
T ss_pred             EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE---------------------------
Confidence                            01345677889 99988887  788999999876511                           


Q ss_pred             eeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          286 IRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                            +.         +.. ...+..++|+||+++|++++.++.|++|++..
T Consensus       289 ------~~---------~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          289 ------KA---------ANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             ------EE---------EEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ------EE---------EcC-CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence                  00         111 12356799999999999998899999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=1.3e-19  Score=154.19  Aligned_cols=237  Identities=10%  Similarity=0.108  Sum_probs=156.9

Q ss_pred             CCceEEEEEccCCCEEEEec-C----CceEEEEcCC--CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            6 PITIHHLALNQDHGCFATGT-E----TGFRVYLSDP--YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d----~~i~iw~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      ...+..++|+|||++|++++ +    +.|.+|+++.  ++........ .+......+++  +++.++++..   .++.|
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-~~~~~p~~~~~--dg~~l~~~~~---~~~~v  122 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-TMGADPCYLTT--NGKNIVTANY---SGGSI  122 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-CSSSCEEEEEE--CSSEEEEEET---TTTEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-cCCCCcEEEEE--CCCEEEEEEC---CCCEE
Confidence            44567799999999998888 4    6899999875  3333323332 23334444554  6776666553   46999


Q ss_pred             EEEECCCccEEeee----cc-----------CcceeEEEEecceeEEE----ecCeEEEEEccccee------e------
Q 018248           79 MIWDDHENRYLGEL----SF-----------RSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKL------V------  127 (359)
Q Consensus        79 ~iwd~~~~~~~~~~----~~-----------~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~------~------  127 (359)
                      .+|++.....+..+    .+           ...+.+++|+|++++++    .++.|.+|++.....      +      
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence            99998754333221    11           22357899999998655    478999999864331      1      


Q ss_pred             eeE-eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE---Eee---cccccccEEEEccCCcEEEEEeCC-
Q 018248          128 DQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK---YIT---AHASRIASIAMTLDGRFVATASSK-  199 (359)
Q Consensus       128 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~---~~~~~i~~~~~s~~~~~l~~~~~d-  199 (359)
                      ... .........++|+|+++.++++  +..++.|.+|+.....+.   .+.   .+......++|+|||++|+++..+ 
T Consensus       203 ~~~~~~~~~~~~~~~~spdg~~l~v~--~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDGKFAYLI--NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEE--ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             cceecCCCCCCeEEEEcCCCCEEEEE--cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence            111 1223345678999998764443  445789999877543322   222   223446799999999998777655 


Q ss_pred             -CCeEEEEEcC--CCc--EEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccC
Q 018248          200 -GTLIRVFNTM--DGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKV  254 (359)
Q Consensus       200 -g~~i~iwd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~  254 (359)
                       +. |.+|++.  +++  .+..+..   ...+..++|+|||++|++++ .++.|.+|+++.
T Consensus       281 ~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          281 ADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             SCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence             77 9999985  455  3334432   34678999999999888877 678999987764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=4.1e-19  Score=151.24  Aligned_cols=273  Identities=10%  Similarity=-0.001  Sum_probs=175.3

Q ss_pred             EEEEec-C--CceEEEEcC--CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC-CccEEeeec
Q 018248           20 CFATGT-E--TGFRVYLSD--PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH-ENRYLGELS   93 (359)
Q Consensus        20 ~l~~~~-d--~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~   93 (359)
                      .+++|+ .  +.|.+|+++  +++.........++...+..++++++++.++.++    .+ .|.+|++. +++......
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~----~~-~v~~~~~~~~g~~~~~~~   78 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-KWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-EEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc----cc-eEEEEEECCCCCEEEeeE
Confidence            345555 2  568887764  4433322222102234677889999998887666    44 99999987 776654433


Q ss_pred             c--CcceeEEEEecceeE--EE-e---------------cCeEEEEEcc-cceeeeeEec----cCCCceeeeeecCCCc
Q 018248           94 F--RSEVKNVRLRRDRIV--VV-L---------------NQKVYVYNFT-DLKLVDQIET----VVNPTGLCDVSQNAGP  148 (359)
Q Consensus        94 ~--~~~v~~~~~~~~~~~--~~-~---------------d~~i~i~d~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~  148 (359)
                      +  .+.+..++|+|+++.  ++ .               ++.+.+|++. +++....+..    +...+..++|+|+++.
T Consensus        79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~  158 (365)
T 1jof_A           79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE
Confidence            2  234667899999984  32 2               6789999996 4655444432    3445678899999876


Q ss_pred             cEEEecCCCCeeEEEEecC-Ceee---EEee--cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcC--CCcEEE---E
Q 018248          149 MVMACPGLLKGQVRVEDYG-TKKS---KYIT--AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTM--DGSLLQ---E  216 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~-~~~~---~~~~--~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~--~~~~~~---~  216 (359)
                      ++++  ...++.|++|+.+ ...+   ..+.  .|...+..++|+|||++|++++. ++. |.+|++.  +++...   .
T Consensus       159 l~~~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~  235 (365)
T 1jof_A          159 LYSA--DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             EEEE--ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEE
T ss_pred             EEEE--cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccce
Confidence            4332  3346789998875 3222   2232  23566899999999999988775 567 9999875  565432   2


Q ss_pred             eec---C--CCCc------ceEEEE-ecCCCCEEEEEcCC-C-----cEEEEEccC-CCCCCCCCccccCCCCCccCCCC
Q 018248          217 MRR---G--AERA------EIYSLA-FSSNAQWLAASSDK-G-----TVHVFGLKV-DSGSPGTSKLHSASEPNLSSKNS  277 (359)
Q Consensus       217 ~~~---~--~~~~------~i~~~~-~s~~~~~l~~~~~d-g-----~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~  277 (359)
                      +..   +  .+..      .+..++ |+|||++|++++.+ +     .|.+|+++. ++ .                   
T Consensus       236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-~-------------------  295 (365)
T 1jof_A          236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-I-------------------  295 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-E-------------------
T ss_pred             EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-E-------------------
Confidence            221   1  0111      488999 99999998776543 2     899999973 32 0                   


Q ss_pred             CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc---cCCEEEEEecC-CeEEEEEeCCC
Q 018248          278 SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR---QNNTIVIVGLD-GSYYKCEFDPM  339 (359)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~i~v~~~~~~  339 (359)
                            ..+.    ..         ...+...+..++|+|   ||++|++++.+ +.|.+|+++.+
T Consensus       296 ------~~~~----~~---------~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          296 ------EKQL----FL---------SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ------EEEE----EE---------EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ------EEee----ee---------eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                  0000    00         111122345689999   89999999874 89999999863

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.87  E-value=1.2e-20  Score=162.55  Aligned_cols=286  Identities=9%  Similarity=-0.052  Sum_probs=179.3

Q ss_pred             eEEEEEccCCCEEEEec--CC--ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            9 IHHLALNQDHGCFATGT--ET--GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~--d~--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      +.+++|||||++|+...  ++  .|.+|++++++...   +..++........|+++++.+++++    .++.|++||+.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~spdg~~l~~~~----~~~~l~~~d~~  110 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---LTEGKGDNTFGGFISTDERAFFYVK----NELNLMKVDLE  110 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---CCCSSCBCTTTCEECTTSSEEEEEE----TTTEEEEEETT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---eecCCCCccccceECCCCCEEEEEE----cCCcEEEEECC
Confidence            67889999999988775  23  57888887754332   2212222233367899999998888    56789999998


Q ss_pred             CccEEeeec-cCcceeE-------------------EEEecceeEEE--------ecCeEEEEEcccceeeeeEeccCCC
Q 018248           85 ENRYLGELS-FRSEVKN-------------------VRLRRDRIVVV--------LNQKVYVYNFTDLKLVDQIETVVNP  136 (359)
Q Consensus        85 ~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~  136 (359)
                      +++...... +......                   ..++|++..++        .+..|++||+.+++..... .+...
T Consensus       111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~  189 (396)
T 3c5m_A          111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAW  189 (396)
T ss_dssp             TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSC
T ss_pred             CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcc
Confidence            887665554 2221111                   23455554443        2347999999887655444 34556


Q ss_pred             ceeeeeec-CCCccEEEecCCCC---eeEEEEecCCeeeEEeecc--cccccEEEEccCCcEEEEEeCC-----CCeEEE
Q 018248          137 TGLCDVSQ-NAGPMVMACPGLLK---GQVRVEDYGTKKSKYITAH--ASRIASIAMTLDGRFVATASSK-----GTLIRV  205 (359)
Q Consensus       137 ~~~~~~~~-~~~~~~l~~~g~~d---~~v~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d-----g~~i~i  205 (359)
                      +..+.|+| ++..++++..+..+   ..|.+++..+.....+..+  ...+..++|+|||++|+.++.+     +. |++
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-l~~  268 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV-IYK  268 (396)
T ss_dssp             EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE-EEE
T ss_pred             cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce-EEE
Confidence            77789999 66654444321111   4677777776655555443  2357789999999987777544     45 999


Q ss_pred             EEcCCCcEEEEeecCCCCcceEEEEecC-CCCEEEEEc----------------CCCcEEEEEccCCCCCCCCCccccCC
Q 018248          206 FNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQWLAASS----------------DKGTVHVFGLKVDSGSPGTSKLHSAS  268 (359)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~~~~~~~~~~~~  268 (359)
                      ||+.+++.......   . ... +.|+| ||+++++++                .+..|++||+.+++...         
T Consensus       269 ~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---------  334 (396)
T 3c5m_A          269 ANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK---------  334 (396)
T ss_dssp             ECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE---------
T ss_pred             EECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE---------
Confidence            99988876543322   1 223 89999 999888754                34679999998765210         


Q ss_pred             CCCccCCCCCceeeeeEeeeecceEEecccceeEEe-ecCCcEEEeeecccCCEEEEEec-CCeEEEEEeCCCCC
Q 018248          269 EPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR-LPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDPMKG  341 (359)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~  341 (359)
                                              .......+..+. -....+..++|+|||+.|+.++. +|...+|.++...+
T Consensus       335 ------------------------l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          335 ------------------------LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             ------------------------EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             ------------------------ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence                                    000000000000 00001345789999998887775 67778888776543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=2.5e-20  Score=173.25  Aligned_cols=246  Identities=13%  Similarity=0.069  Sum_probs=165.5

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCc---e--eEEEEeccCCEEEEEecCCC-----CC
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGG---T--QLVSMLFRSNIICLVNSGPH-----QS   75 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~---v--~~~~~~~~~~~~~~~~~~~~-----~d   75 (359)
                      .....+++|+|||++++++ |+.|++|++.+++....  +. +|...   +  ..++++|+++.+++.+....     ..
T Consensus        16 ~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVF--LE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEE--EC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccccccEECCCCcEEEEc-CCcEEEEECCCCceEEE--Ee-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            3456789999999999887 99999999998775432  32 44322   2  23788999999988873110     12


Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE-eccCC-----------------
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI-ETVVN-----------------  135 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~-~~~~~-----------------  135 (359)
                      +.+.+||+.+++......+...+...+|+|||+.++  .++.|++|++.+++..+.. .++..                 
T Consensus        92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            677899999988765444778899999999999888  8999999999777643321 11111                 


Q ss_pred             CceeeeeecCCCccEEEec-------------------------------CCCC--eeEEEEecCC---e---eeEEeec
Q 018248          136 PTGLCDVSQNAGPMVMACP-------------------------------GLLK--GQVRVEDYGT---K---KSKYITA  176 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~-------------------------------g~~d--~~v~~~~~~~---~---~~~~~~~  176 (359)
                      ....+.|+||++.++.+..                               |..+  ..|++|+..+   .   ....+..
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence            1134789999987444321                               0111  2466688776   4   4444442


Q ss_pred             ------ccccccEEEEccCCcEEEEEeC----CCCeEEEEEcCCCc----EE--EEeecCCCCcceE-----EEEecCCC
Q 018248          177 ------HASRIASIAMTLDGRFVATASS----KGTLIRVFNTMDGS----LL--QEMRRGAERAEIY-----SLAFSSNA  235 (359)
Q Consensus       177 ------~~~~i~~~~~s~~~~~l~~~~~----dg~~i~iwd~~~~~----~~--~~~~~~~~~~~i~-----~~~~s~~~  235 (359)
                            |...+..++|+|||+.++....    +.. |++||+.+++    +.  ..+....+...+.     ..+|+|||
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence                  7778999999999997665533    235 9999999887    21  1110011334443     78899999


Q ss_pred             CEEE-EEc-CCC--cEEEEEccCCC
Q 018248          236 QWLA-ASS-DKG--TVHVFGLKVDS  256 (359)
Q Consensus       236 ~~l~-~~~-~dg--~i~iw~~~~~~  256 (359)
                      +.|+ ..+ .+|  .|++|++..+.
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CEEEEEEEcCCCceEEEEEECCCCc
Confidence            9876 555 344  57778877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=1.1e-18  Score=151.43  Aligned_cols=242  Identities=13%  Similarity=0.080  Sum_probs=165.9

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc----------cee----eeecccCCCCceeEEEEeccCCEEEEE-
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK----------PIM----RRDFDRNPRGGTQLVSMLFRSNIICLV-   68 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----------~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~-   68 (359)
                      +...+..+++++++.++++++ ++ +++|+.....          ...    ...+  .|...+..++|+++++.++++ 
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV--PMKFPIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE--CCSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc--cCCCcccEEEEcCCCCEEEEEE
Confidence            345689999999999999998 55 9998764110          000    0112  356679999999999888753 


Q ss_pred             -ecCCCCCCeEEEEECCCc--------cE---Eeeec-cCcceeEEEEecc-eeEEE---ecCeEEEEEcccceeeeeEe
Q 018248           69 -NSGPHQSNKVMIWDDHEN--------RY---LGELS-FRSEVKNVRLRRD-RIVVV---LNQKVYVYNFTDLKLVDQIE  131 (359)
Q Consensus        69 -~~~~~~d~~i~iwd~~~~--------~~---~~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~  131 (359)
                       +++  .|+.|++||+.++        +.   +..+. |...|.+++|+|+ +.+++   .|++|++||+++++.+....
T Consensus       112 ~sgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          112 MSSE--YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             EETT--TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred             eccC--CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence             233  6899999998765        22   33444 7899999999998 66665   89999999999887766666


Q ss_pred             ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc-------cccccEEEEccCCcEEEEEe-CCCC--
Q 018248          132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH-------ASRIASIAMTLDGRFVATAS-SKGT--  201 (359)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~-~dg~--  201 (359)
                      .|...+.+++|+|+++.  +++ |+.||.|++|+.++.....+..|       ...+.+++|++++.++++.+ .+|.  
T Consensus       190 ~~~~~v~~v~wspdg~~--las-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQ--LAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             CGGGCEEEEEECTTSSC--EEE-EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             CCCCceeEEEEcCCCCE--EEE-EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            77888999999999876  555 55799999999886555555443       23789999999998876543 3321  


Q ss_pred             ---eEEEEEcCCCc-----EEEEeecC-----CCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccC
Q 018248          202 ---LIRVFNTMDGS-----LLQEMRRG-----AERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKV  254 (359)
Q Consensus       202 ---~i~iwd~~~~~-----~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~  254 (359)
                         .+++|+++..+     ....+...     ....+-..+.+-++.+++++++ ..+.|.|.....
T Consensus       267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence               18899997642     22222110     1222333344446767665554 455577776543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=9.4e-20  Score=158.23  Aligned_cols=169  Identities=15%  Similarity=0.152  Sum_probs=125.6

Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEccccee----------eee-----EeccCCCce
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKL----------VDQ-----IETVVNPTG  138 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~----------~~~-----~~~~~~~~~  138 (359)
                      +.+++|+... .    + ....+..+++++++.+++  ....+++|+......          +..     ...+...+.
T Consensus        23 ~~vri~~~~~-~----~-~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   96 (434)
T 2oit_A           23 KKVRIFDSPE-E----L-PKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH   96 (434)
T ss_dssp             CEEECSCCCS-S----C-CCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred             eeEEecCCcc-c----c-CCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence            5677776321 1    1 234578899999877776  444599988632111          000     012345688


Q ss_pred             eeeeecCCCccEEEe-cCCCCeeEEEEecCCe------------eeEEeecccccccEEEEccC-CcEEEEEeCCCCeEE
Q 018248          139 LCDVSQNAGPMVMAC-PGLLKGQVRVEDYGTK------------KSKYITAHASRIASIAMTLD-GRFVATASSKGTLIR  204 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~-~g~~d~~v~~~~~~~~------------~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~  204 (359)
                      .++|+|+++.++++. +|+.|+.|++|+....            ....+.+|...|.+++|+|+ +.+|++++.||. |+
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~  175 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IA  175 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EE
Confidence            899999987532211 4778999999986432            24556779999999999998 889999999999 99


Q ss_pred             EEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          205 VFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      +||++++..+.....  |...|.+++|+|+|++|++|+.||.|++||++
T Consensus       176 iwD~~~~~~~~~~~~--~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          176 VLQVTETVKVCATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEESSSEEEEEEEC--GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEcCCCcceeeccC--CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            999999877655554  66799999999999999999999999999998

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=5.2e-19  Score=150.63  Aligned_cols=242  Identities=9%  Similarity=0.103  Sum_probs=160.5

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcC-CCcceeeeecccCCCCceeEEEEeccCCEEEE-Eec-------CC--C-C
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL-VNS-------GP--H-Q   74 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~~~-------~~--~-~   74 (359)
                      ..+..++|+|||++|++++.+.|.+|+++ +++........ .+ +....++++++++.+++ ++.       +.  . .
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~-~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEee-cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            46789999999999988883399999997 55443222211 11 23445677777775333 331       10  0 1


Q ss_pred             CCeEEEEECC-CccEEeeec-----cCcceeEEEEecceeEEE----ecCeEEEEEcc-cceee--eeEec--cCCCcee
Q 018248           75 SNKVMIWDDH-ENRYLGELS-----FRSEVKNVRLRRDRIVVV----LNQKVYVYNFT-DLKLV--DQIET--VVNPTGL  139 (359)
Q Consensus        75 d~~i~iwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~-~~~~~--~~~~~--~~~~~~~  139 (359)
                      ++.+.+|++. +++....+.     +...+.+++|+|+|++++    .++.|++|++. +++..  ..+..  +......
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            5899999987 465544333     346789999999998666    35799999997 66543  23332  2345677


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecC---Ceee---EEee-------cccc------cccEEE-EccCCcEEEEEeCC
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYG---TKKS---KYIT-------AHAS------RIASIA-MTLDGRFVATASSK  199 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~---~~~~---~~~~-------~~~~------~i~~~~-~s~~~~~l~~~~~d  199 (359)
                      ++|+|+++.++++  +..++.+.+|+.+   ++..   ..+.       +|..      .+..++ |+|||++|++++.+
T Consensus       198 ~~~spdg~~l~v~--~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          198 VAMHPTGNYLYAL--MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEECTTSSEEEEE--ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             eEECCCCCEEEEE--ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            8999998864443  3346789887653   3221   1221       1122      478899 99999988877643


Q ss_pred             C------CeEEEEEcC-CCcEEEE---eecCCCCcceEEEEecC---CCCEEEEEcCC-CcEEEEEccCC
Q 018248          200 G------TLIRVFNTM-DGSLLQE---MRRGAERAEIYSLAFSS---NAQWLAASSDK-GTVHVFGLKVD  255 (359)
Q Consensus       200 g------~~i~iwd~~-~~~~~~~---~~~~~~~~~i~~~~~s~---~~~~l~~~~~d-g~i~iw~~~~~  255 (359)
                      .      . |.+|++. +++....   ...  +...+..++|+|   ||++|++++.+ +.|.+|+++..
T Consensus       276 ~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~--~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          276 NKFELQGY-IAGFKLRDCGSIEKQLFLSPT--PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSTTSCCE-EEEEEECTTSCEEEEEEEEEC--SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCe-EEEEEECCCCCEEEeeeeeec--CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            2      7 9999996 5665432   221  234566789999   89999998864 89999999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=3e-19  Score=165.78  Aligned_cols=233  Identities=9%  Similarity=0.081  Sum_probs=156.8

Q ss_pred             ceEEEEEccCCCEEEEecC----------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            8 TIHHLALNQDHGCFATGTE----------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~d----------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      .|.+++|||||++|+++++          +.|++||+++++......+    ...+..++|+|+++.++++.     ++.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~-----~~~  131 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVY-----QNN  131 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEE-----TTE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCEEEEEE-----CCe
Confidence            3889999999999988763          7899999998654211223    35678899999999999876     589


Q ss_pred             EEEEECCCccEEeeec--cCcce-----------------eEEEEecceeEEE---ecC---------------------
Q 018248           78 VMIWDDHENRYLGELS--FRSEV-----------------KNVRLRRDRIVVV---LNQ---------------------  114 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~--~~~~v-----------------~~~~~~~~~~~~~---~d~---------------------  114 (359)
                      |++|++.+++......  +...|                 .+++|+|||+.++   .|.                     
T Consensus       132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            9999998887655432  22212                 4899999998887   331                     


Q ss_pred             -------------eEEEEEcccceee---e-----eEeccCCCceeeeeecCCCccEEEecCCCC--eeEEEEe----cC
Q 018248          115 -------------KVYVYNFTDLKLV---D-----QIETVVNPTGLCDVSQNAGPMVMACPGLLK--GQVRVED----YG  167 (359)
Q Consensus       115 -------------~i~i~d~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--~~v~~~~----~~  167 (359)
                                   .|++||+.+++..   .     .+..+...+..++|+|++. +++......+  ..|.+|+    ..
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCC
Confidence                         7889999877642   1     1223555667889999954 2222111122  3466677    54


Q ss_pred             CeeeE-Ee----eccccccc-----EEEEccCCcEEEE--EeCCCC-eEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          168 TKKSK-YI----TAHASRIA-----SIAMTLDGRFVAT--ASSKGT-LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       168 ~~~~~-~~----~~~~~~i~-----~~~~s~~~~~l~~--~~~dg~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      ..... .+    ..|...+.     .++|+|||+.|+.  ...+|. .|.+||+.+++ ...+..  +...+..+.++ +
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d  366 (719)
T 1z68_A          291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-T  366 (719)
T ss_dssp             SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-C
T ss_pred             CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-e
Confidence            43332 23    35666776     8999999996554  445553 16677776666 344543  34567787777 8


Q ss_pred             CCEEEEEcCC-----CcEEEEEccC
Q 018248          235 AQWLAASSDK-----GTVHVFGLKV  254 (359)
Q Consensus       235 ~~~l~~~~~d-----g~i~iw~~~~  254 (359)
                      ++.|+..+.+     +..++|.+..
T Consensus       367 ~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          367 QDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CCEEEEEEecCCCCCceEEEEEEeC
Confidence            8777666554     7899999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=9.5e-18  Score=154.24  Aligned_cols=240  Identities=8%  Similarity=-0.038  Sum_probs=161.1

Q ss_pred             CCCceEEEEEccCCCEEEEe--c-CCceEEEEcCCCcceeeeecccCCCCcee---------EEEEe--ccCCE-EEEEe
Q 018248            5 DPITIHHLALNQDHGCFATG--T-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQ---------LVSML--FRSNI-ICLVN   69 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~--~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-~~~~~   69 (359)
                      |...|..++|++++.+++..  . ++...||....+...  ..+. .|...+.         ...++  |+++. +++++
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE--ESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE--EESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc--ceeC-CCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            66789999999987777777  5 778999986443333  2332 3444444         44455  88888 77665


Q ss_pred             cCCCCCCeEEEEECC--C-ccEEeeec-----cCcceeEEEEecceeEEE---ec----------CeEEEEEccc-----
Q 018248           70 SGPHQSNKVMIWDDH--E-NRYLGELS-----FRSEVKNVRLRRDRIVVV---LN----------QKVYVYNFTD-----  123 (359)
Q Consensus        70 ~~~~~d~~i~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~---~d----------~~i~i~d~~~-----  123 (359)
                      .   .+..|.++++.  . ++......     +...+.+++|+|||+.++   .+          ..|++||+.+     
T Consensus        99 ~---~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           99 F---GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             T---TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             C---CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            3   25778888876  3 44333222     356788999999998777   34          5899999977     


Q ss_pred             -ceeeeeEe-ccCCCceeeeeecCCCccEEEecCC-----CCeeEEEEecCC-e---eeEEe-ecccccccEEEEccCCc
Q 018248          124 -LKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGL-----LKGQVRVEDYGT-K---KSKYI-TAHASRIASIAMTLDGR  191 (359)
Q Consensus       124 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~-----~d~~v~~~~~~~-~---~~~~~-~~~~~~i~~~~~s~~~~  191 (359)
                       ++. ..+. .+...+..++|+|+++.++++....     ....|++|+.+. .   ....+ ..+...+..++|+|||+
T Consensus       176 ~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          176 RSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred             CCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence             543 3443 4445566788999998744443111     125788887762 3   34444 44578899999999999


Q ss_pred             EEEEEeCCCC-eEEEEEcCCCcEEEEeecCCCCcc--------eEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          192 FVATASSKGT-LIRVFNTMDGSLLQEMRRGAERAE--------IYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       192 ~l~~~~~dg~-~i~iwd~~~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ++++++.++. .|.+||..+++.......  +...        +..++|+|+++++++++. +.++||.++.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~  323 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP  323 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence            8888888883 066666656665443332  2111        567899999999999998 9999996653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=7e-17  Score=132.68  Aligned_cols=242  Identities=10%  Similarity=0.168  Sum_probs=171.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecc---cCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFD---RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      .+-..+.+++++++|+++++.. ++.|.+|+.+ ++........   .+|...+..+++......+.++..+  .++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~--~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--PTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--GGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC--CCCEEE
Confidence            3456789999999999888877 8999999987 3332211110   1233456667774334444444421  258999


Q ss_pred             EEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEE
Q 018248           80 IWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        80 iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~  152 (359)
                      +|| .+++.+..+.  ....+.+++++|++.+++   .++.|.+||. +++.+..+..  +......+++++++. + ++
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~-l-~v  179 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE-I-FI  179 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-E-EE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC-E-EE
Confidence            999 6777777665  345789999999998776   4689999996 4566655542  233456778888764 3 33


Q ss_pred             ecCCCCeeEEEEecCCeeeEEeecc--cccccEEEEccCCcEEEEEeCCC-CeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248          153 CPGLLKGQVRVEDYGTKKSKYITAH--ASRIASIAMTLDGRFVATASSKG-TLIRVFNTMDGSLLQEMRRGAERAEIYSL  229 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg-~~i~iwd~~~~~~~~~~~~~~~~~~i~~~  229 (359)
                      + ...++.|++|+.+++.+..+..+  ...+..++++|+|+++++...++ . |.+|| .+++.+..+..+.....+.++
T Consensus       180 ~-~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~-~~g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          180 S-DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             E-EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEEE
T ss_pred             E-ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEEC-CCCCEEEEEcccCCCCcceeE
Confidence            3 33578899999888777766543  35788999999999888887775 8 99999 467777777654333457899


Q ss_pred             EecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          230 AFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +++|+|+++++ +.++.|++|++....
T Consensus       257 ~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             EECCCCcEEEE-CCCCeEEEEEccccc
Confidence            99999987777 568999999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.82  E-value=9.4e-17  Score=135.70  Aligned_cols=259  Identities=6%  Similarity=0.022  Sum_probs=173.9

Q ss_pred             CCceEEEEEccCCCEEEEec----------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-C
Q 018248            6 PITIHHLALNQDHGCFATGT----------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-Q   74 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~----------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~   74 (359)
                      -..+...++  ||+.++...          ++.|.+|++++++..   .+     ..+....|+|+++.+++++.... .
T Consensus        14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l-----~~~~~~~~SpDg~~la~~~~~~~~~   83 (347)
T 2gop_A           14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI-----ENATMPRISPDGKKIAFMRANEEKK   83 (347)
T ss_dssp             SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE-----ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred             eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec-----ccCCCeEECCCCCEEEEEEeccCCC
Confidence            356778888  999887642          456899999876532   22     34567899999999988774210 1


Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--e----------------------------cCeEEEEEcccc
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L----------------------------NQKVYVYNFTDL  124 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~----------------------------d~~i~i~d~~~~  124 (359)
                      ...|.+|++.+++......... +..+.|+|+++.++  .                            ...|++||+.++
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             cceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            2358888988887766655555 99999999998776  2                            257999999888


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCC-------CeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL-------KGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  197 (359)
                      +.+..+.. . .+..++|+|++  ++++.....       ...|.+++ .+ ....+..+ ..+..+  +|||++|+.++
T Consensus       163 ~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~~-~~~~~~--spdg~~l~~~~  233 (347)
T 2gop_A          163 EVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE-DG-KEEKMFEK-VSFYAV--DSDGERILLYG  233 (347)
T ss_dssp             EEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE-TT-EEEEEEEE-ESEEEE--EECSSCEEEEE
T ss_pred             eEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC-CC-ceEEeccC-cceeeE--CCCCCEEEEEE
Confidence            76455554 3 67788999988  333321111       22455555 33 34445444 444444  99999888777


Q ss_pred             CC--------CCeEEEEEcCCCcEEEEeecCCCCcceEE-EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCC
Q 018248          198 SK--------GTLIRVFNTMDGSLLQEMRRGAERAEIYS-LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSAS  268 (359)
Q Consensus       198 ~d--------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  268 (359)
                      .+        .. |.+||  +++.. .+..+ +...+.. +.|+ |+ ++++++.++.++|| +.+++..          
T Consensus       234 ~~~~~~~~~~~~-l~~~d--~~~~~-~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~----------  295 (347)
T 2gop_A          234 KPEKKYMSEHNK-LYIYD--GKEVM-GILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK----------  295 (347)
T ss_dssp             CCSSSCCCSSCE-EEEEC--SSCEE-ESSTT-CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE----------
T ss_pred             ccccCCccccce-EEEEC--CCceE-ecccc-CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE----------
Confidence            44        34 77777  55544 33322 4567886 9999 88 88999999999999 8843200          


Q ss_pred             CCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeE-EEEEeC
Q 018248          269 EPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSY-YKCEFD  337 (359)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~v~~~~  337 (359)
                                             .          +....+.+..++|+|  ..+++++.++.. .+|.++
T Consensus       296 -----------------------~----------~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          296 -----------------------P----------IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             -----------------------E----------EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             -----------------------E----------EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence                                   0          111235678899999  677777777765 888886

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=1.5e-16  Score=134.89  Aligned_cols=232  Identities=13%  Similarity=0.121  Sum_probs=157.6

Q ss_pred             EEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccC---CCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248           11 HLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRN---PRGGTQLVSMLFRSNIICLVNSGPHQSN   76 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~d~   76 (359)
                      .++|+|||++++++.           ++.|.+||..+.+......+..+   +......++++++++.++++..+  .++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~--~~~  131 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS--PAT  131 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES--SSE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC--CCC
Confidence            899999999998764           45699999987766544433101   12345678899999988877632  258


Q ss_pred             eEEEEECCCccEEee-eccCcceeEEEEecce--eEEE--ecCeEEEEEccc-ceeeee------EeccCCCceeeeeec
Q 018248           77 KVMIWDDHENRYLGE-LSFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTD-LKLVDQ------IETVVNPTGLCDVSQ  144 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~-~~~~~~------~~~~~~~~~~~~~~~  144 (359)
                      .|.+||+.+++.+.. +..... ..+.+.|++  .+++  .||.+.+|++.. ++....      +.....++ .+..++
T Consensus       132 ~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  209 (361)
T 2oiz_A          132 SIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPAL  209 (361)
T ss_dssp             EEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEE
T ss_pred             eEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecc
Confidence            999999999998888 764332 235566765  3333  788888888854 444322      22222222 234466


Q ss_pred             CCCccEEEecCCCCeeEEEEecCCeeeE---Eeec------c----cccccEEEEccCCcEEEEEeC-----------CC
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGTKKSK---YITA------H----ASRIASIAMTLDGRFVATASS-----------KG  200 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~~------~----~~~i~~~~~s~~~~~l~~~~~-----------dg  200 (359)
                      ++...++..   .++.+.+++.......   .+..      +    ......++|+|+++.++++..           .+
T Consensus       210 ~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~  286 (361)
T 2oiz_A          210 DKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA  286 (361)
T ss_dssp             CSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred             cCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence            665544433   4678888776543222   1110      0    112234789999887777643           34


Q ss_pred             CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      . |.+||+.+++.+..+..+  .  +.+++|+|||++|++++. +.|.+||..++
T Consensus       287 ~-v~viD~~t~~~v~~i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          287 E-IWVMDTKTKQRVARIPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             E-EEEEETTTTEEEEEEECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             e-EEEEECCCCcEEEEEecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            6 999999999999999863  3  899999999999998887 99999999987

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=2e-16  Score=132.63  Aligned_cols=240  Identities=14%  Similarity=0.085  Sum_probs=170.7

Q ss_pred             CCceEEEEEccCCCEEEEec-C------------------------CceEEEEcCCCcceeeeecccCCCCceeEEEEec
Q 018248            6 PITIHHLALNQDHGCFATGT-E------------------------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF   60 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d------------------------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~   60 (359)
                      -..+.+++++|+|+++++.. +                        +.|.+||.++++..  ..+..++-.....+++.+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEECC
Confidence            46799999999999998888 5                        36999998876654  333213445677888888


Q ss_pred             cCCEEEEEecCCCCCCeEEEEECCCcc-EEeeec----------cCcceeEEEEec-ceeEEE--e--cCeEEEEEcccc
Q 018248           61 RSNIICLVNSGPHQSNKVMIWDDHENR-YLGELS----------FRSEVKNVRLRR-DRIVVV--L--NQKVYVYNFTDL  124 (359)
Q Consensus        61 ~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~~~--~--d~~i~i~d~~~~  124 (359)
                      +++..+...    .++.|++||..... .+..+.          +-.....++++| ++.+++  .  ++.|++|+ .++
T Consensus       101 ~g~l~v~d~----~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          101 DGNYWVTDV----ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             TSCEEEEET----TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             CCCEEEEEC----CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            777433333    46899999965442 444442          223688999999 777766  2  57899999 467


Q ss_pred             eeeeeEeccC----------CCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEee--cccccccEEEEccCCc
Q 018248          125 KLVDQIETVV----------NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYIT--AHASRIASIAMTLDGR  191 (359)
Q Consensus       125 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~--~~~~~i~~~~~s~~~~  191 (359)
                      +.+..+....          .....+++++++..++++  ...++.|++|+.+ ++.+..+.  .+...+..++++| +.
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~--d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~  252 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA--DRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF  252 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE--ETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE--ECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence            7766664322          124678888885554444  4457889999887 77777763  4556788999999 44


Q ss_pred             EEEEE-------eCCCCeEEEEEcCCCcEEEEeec-CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          192 FVATA-------SSKGTLIRVFNTMDGSLLQEMRR-GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       192 ~l~~~-------~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+++.       ..+.. |++||..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++....
T Consensus       253 ~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred             EEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence            33333       33457 99999999999988742 1144678999999999888888899999999997643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=1.1e-15  Score=125.53  Aligned_cols=238  Identities=13%  Similarity=0.173  Sum_probs=165.1

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeecc-------CcceeEEEE-ecceeEEE-e---cCe
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSF-------RSEVKNVRL-RRDRIVVV-L---NQK  115 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~-~~~~~~~~-~---d~~  115 (359)
                      +|-.....+++.++++..+...    .++.|.+||.. ++.+..+..       ...+..+++ .+++.+++ .   ++.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~----~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADT----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEG----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CccCCCceEEECCCCCEEEEEC----CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            3445567778877766444333    46899999976 666665531       246789999 47777666 3   789


Q ss_pred             EEEEEcccceeeeeEec-cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee--cccccccEEEEccCCcE
Q 018248          116 VYVYNFTDLKLVDQIET-VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT--AHASRIASIAMTLDGRF  192 (359)
Q Consensus       116 i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~  192 (359)
                      |.+|| .+++.+..+.. .......+++.+++. + +++ ...++.|.+|+.+++.+..+.  .+...+..++++|+|++
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l-~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-I-IVV-ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-E-EEE-ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-E-EEE-ECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            99999 56776666643 223456778888774 3 333 335778999988877766664  34456889999999998


Q ss_pred             EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC-cEEEEEccCCCCCCCCCccccCCCCC
Q 018248          193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG-TVHVFGLKVDSGSPGTSKLHSASEPN  271 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~  271 (359)
                      +++...++. |++||. +++.+..+....+...+..++++++|+++++...++ .|.+|+.+...               
T Consensus       178 ~v~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~---------------  240 (286)
T 1q7f_A          178 FISDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL---------------  240 (286)
T ss_dssp             EEEEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE---------------
T ss_pred             EEEECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE---------------
Confidence            887777888 999996 566666665422235789999999999988887775 99999954221               


Q ss_pred             ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                        +. .+...       .+...+..++++|+|+.+++ +.|+.|++|++..
T Consensus       241 ------------------~~-~~~~~-------~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          241 ------------------IS-ALESK-------VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             ------------------EE-EEEES-------SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             ------------------EE-EEccc-------CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence                              00 01100       11224678999999876655 6799999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=1.3e-16  Score=133.70  Aligned_cols=247  Identities=10%  Similarity=0.111  Sum_probs=169.4

Q ss_pred             CCceeEEEEeccCCEEEEEecCCC--------------------CCCeEEEEECCCccEEeeec--cCcceeEEEEecce
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPH--------------------QSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDR  107 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~--------------------~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~  107 (359)
                      -+.+..+++.++++.++.......                    .++.|.+||..+++.+..+.  +-..+..++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            456777888887766554442200                    12479999998898877665  33578899999999


Q ss_pred             eEEE---ecCeEEEEEcccce-eeeeEe---------ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEe
Q 018248          108 IVVV---LNQKVYVYNFTDLK-LVDQIE---------TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYI  174 (359)
Q Consensus       108 ~~~~---~d~~i~i~d~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~  174 (359)
                      .+++   .++.|++||..... .+..+.         .+......++++|+...++++- +..++.|++|+.++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d-~~~~~~I~~~~~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD-GYCNSRIVQFSPSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE-CSSCCEEEEECTTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe-CCCCCeEEEEcCCCCEEEEe
Confidence            8766   56899999974332 444442         1222345688888444444442 22478899998888777766


Q ss_pred             ecc----------cccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE--
Q 018248          175 TAH----------ASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS--  241 (359)
Q Consensus       175 ~~~----------~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--  241 (359)
                      ...          -.....++++|+ +.++++...++. |++||..+++.+..+....+...+..++|+| +..+++.  
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            432          234789999998 777777777888 9999998899998886544566889999999 4333333  


Q ss_pred             -----cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248          242 -----SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG  316 (359)
Q Consensus       242 -----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  316 (359)
                           ..+..|++|++.+++..                                 ..+...      ..+...+..++++
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~---------------------------------~~~~~~------~~~~~~p~~ia~~  300 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEII---------------------------------DVFKPV------RKHFDMPHDIVAS  300 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEE---------------------------------EEECCS------SSCCSSEEEEEEC
T ss_pred             EEeccCCCcEEEEEEcCCCeEE---------------------------------EEEcCC------CCccCCeeEEEEC
Confidence                 34458999999877611                                 011100      1122456889999


Q ss_pred             ccCCEEEEEecCCeEEEEEeCC
Q 018248          317 RQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       317 ~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      |+|..+++...++.|++|+++.
T Consensus       301 ~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          301 EDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCc
Confidence            9997777777899999998864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=2.1e-16  Score=135.70  Aligned_cols=196  Identities=10%  Similarity=-0.030  Sum_probs=137.4

Q ss_pred             EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe
Q 018248           56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE  131 (359)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~  131 (359)
                      .+|+|+++.+++.+... ....|.+||+.+++...... +...+..+.|+|+++.++   .++.|++||+.+++......
T Consensus        41 ~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFD-GPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTT-SSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCC-CCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            67899999999888421 12369999999988777666 444555788999998877   46799999999887766665


Q ss_pred             ccCCCceeee--eecCCCccEEEe---------------------cCCCCeeEEEEecCCeeeEEeecccccccEEEEcc
Q 018248          132 TVVNPTGLCD--VSQNAGPMVMAC---------------------PGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL  188 (359)
Q Consensus       132 ~~~~~~~~~~--~~~~~~~~~l~~---------------------~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~  188 (359)
                      .+...+....  +++++..  ++.                     ....+..|++++........+..+...+..++|+|
T Consensus       120 ~~~~~~~~~~~~~~~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          120 VPAEWVGYGTWVANSDCTK--LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             CCTTEEEEEEEEECTTSSE--EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             chhhcccccceeECCCCCe--eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            5544333333  3566654  331                     12235678888887777777777778899999999


Q ss_pred             -CCcEEEEEeCC------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC-CC----cEEEEEccCCC
Q 018248          189 -DGRFVATASSK------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD-KG----TVHVFGLKVDS  256 (359)
Q Consensus       189 -~~~~l~~~~~d------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg----~i~iw~~~~~~  256 (359)
                       ||+.|+....+      .. |.++|...++. ..+..+.....+..++|||||+.|+..+. ++    .|++||+.+++
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~-l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDAR-MWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCS-EEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             CCCCEEEEEEecCCCCCcce-EEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence             99998877753      26 88888765544 34443211135788999999997765443 22    39999998876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=6.7e-17  Score=150.23  Aligned_cols=194  Identities=12%  Similarity=0.100  Sum_probs=134.9

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCc-----ceeEEEEecceeEEE--ec---------
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRS-----EVKNVRLRRDRIVVV--LN---------  113 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~~~--~d---------  113 (359)
                      .....+.|++++..++. +     |+.|++||+.+++....+. +..     ...++.|+|||+.++  .+         
T Consensus        17 ~~~~~~~w~~dg~~~~~-~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYK-Q-----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCCEEECSSSEEEEE-E-----TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             ccccccEECCCCcEEEE-c-----CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            34556788888754443 2     5899999999998877665 332     224588999999887  32         


Q ss_pred             -CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee--cccc-----------
Q 018248          114 -QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT--AHAS-----------  179 (359)
Q Consensus       114 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~--~~~~-----------  179 (359)
                       +.+.+||+.+++.. .+..+...+...+|+|+++.  ||++  .++.|++|+..+.....+.  ++..           
T Consensus        91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~--la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHK--LAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTC--EEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCE--EEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence             67889999888754 35555667888999999998  4442  3678999887665444443  2221           


Q ss_pred             ------cccEEEEccCCcEEEEEeCCC------------------------------------CeEEEEEcCC---Cc--
Q 018248          180 ------RIASIAMTLDGRFVATASSKG------------------------------------TLIRVFNTMD---GS--  212 (359)
Q Consensus       180 ------~i~~~~~s~~~~~l~~~~~dg------------------------------------~~i~iwd~~~---~~--  212 (359)
                            ....+.|||||+.||.++.|.                                    . |++||+.+   ++  
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcc
Confidence                  123589999999999875321                                    4 78899888   73  


Q ss_pred             EEEEeecC----CCCcceEEEEecCCCCEEEEEcC----CCcEEEEEccCCC
Q 018248          213 LLQEMRRG----AERAEIYSLAFSSNAQWLAASSD----KGTVHVFGLKVDS  256 (359)
Q Consensus       213 ~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~----dg~i~iw~~~~~~  256 (359)
                      ....+...    .+...+..++|||||+.++....    +..|++||+.+++
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            22233321    14567999999999997665532    3469999999876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=7.3e-16  Score=129.47  Aligned_cols=236  Identities=12%  Similarity=0.090  Sum_probs=154.9

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ...|.+++|++++..++... ++.++.|..   +..  ..+. ++...+..+++.++++..+...    .++.|.+||..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~~~~~~~g~l~~~~~----~~~~i~~~d~~   74 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTITA---EPW--LEIS-KKGLQLEGLNFDRQGQLFLLDV----FEGNIFKINPE   74 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEE--EEEE-SSCCCEEEEEECTTSCEEEEET----TTCEEEEECTT
T ss_pred             ccccceeeecCCccceeEEeecccCccccc---cee--EEEe-ccCccccCcEECCCCCEEEEEC----CCCEEEEEeCC
Confidence            45688999999988876666 889999932   222  2222 3455567788887776333333    46899999998


Q ss_pred             CccEEeee-ccCcceeEEEEecceeEEE---ec----CeEEEEEcccceeeeeEe--ccCCCceeeeeecCCCccEEEec
Q 018248           85 ENRYLGEL-SFRSEVKNVRLRRDRIVVV---LN----QKVYVYNFTDLKLVDQIE--TVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        85 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~---~d----~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      +++..... .+...+.+++++|++.+++   .+    +.|.+||..+++....+.  .....+..+++++++. +++...
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~  153 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDF  153 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEEC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEec
Confidence            88766554 3567899999999998776   22    589999987765443332  1233456678888764 333321


Q ss_pred             CC----CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEE-eCCCCeEEEEEcCC-CcEEEEe-----ecCCCC
Q 018248          155 GL----LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMD-GSLLQEM-----RRGAER  223 (359)
Q Consensus       155 g~----~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~-~~~~~~~-----~~~~~~  223 (359)
                      ..    ..+.|..++..+.....+......+..++|+|+|+.|+.+ +.++. |.+||+.+ +..+..+     ......
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCC
Confidence            10    1355655665554444444444567899999999866544 45677 99999864 3332211     100011


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ..+..++++++|+++++...++.|.+||.+
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            367889999999988887778899999874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=5.2e-16  Score=143.61  Aligned_cols=245  Identities=10%  Similarity=0.042  Sum_probs=169.9

Q ss_pred             CCCceEEEEEccCCCEEEEec-C-C----ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-----
Q 018248            5 DPITIHHLALNQDHGCFATGT-E-T----GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-----   73 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d-~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-----   73 (359)
                      |...+..++|||||++||.+. + |    .|++||+++++.... .+.   ...+..++|+++++.+++++....     
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEE---EECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-ccc---CcccceEEEEeCCCEEEEEEECCcccccc
Confidence            334688999999999998876 2 3    799999998765432 221   223567899999999998874210     


Q ss_pred             -------CCCeEEEEECCCccE----Eeeec-cCcceeEEEEecceeEEE---e-----cCeEEEEEccc------ce-e
Q 018248           74 -------QSNKVMIWDDHENRY----LGELS-FRSEVKNVRLRRDRIVVV---L-----NQKVYVYNFTD------LK-L  126 (359)
Q Consensus        74 -------~d~~i~iwd~~~~~~----~~~~~-~~~~v~~~~~~~~~~~~~---~-----d~~i~i~d~~~------~~-~  126 (359)
                             ....|++|++.+++.    +.... +...+..+.|+|+|++++   .     +..|++||+.+      ++ .
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                   023499999988762    22222 345578999999998887   2     57899999976      43 3


Q ss_pred             eeeEeccCCCceeeeeecCCCccEEEecCC-CCeeEEEEecCCee---eEEeecccc--cccEEEEccCCcEEEEEeCCC
Q 018248          127 VDQIETVVNPTGLCDVSQNAGPMVMACPGL-LKGQVRVEDYGTKK---SKYITAHAS--RIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~d~~v~~~~~~~~~---~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg  200 (359)
                      ...+..+..... ..++++++.+++.+... ..+.|.+++.....   .+.+..|..  .+..++|++++.++++...++
T Consensus       279 ~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          279 WVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             CEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             eEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence            555555554443 35888888766554211 23467777776532   355555544  688899998888888888887


Q ss_pred             C-eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE-c---CCCcEEEEEccCCC
Q 018248          201 T-LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS-S---DKGTVHVFGLKVDS  256 (359)
Q Consensus       201 ~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~---~dg~i~iw~~~~~~  256 (359)
                      . .|.+||+.+++.+..+..  +.+.+..+.++|+++.++.. +   ..++|++||+.+++
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            4 156678777887777765  46788999999999766533 2   34789999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=3.1e-16  Score=134.86  Aligned_cols=201  Identities=7%  Similarity=-0.063  Sum_probs=135.5

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCccee-EEEEecceeEEE---ecCeEEEEEcccceeee
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVK-NVRLRRDRIVVV---LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~  128 (359)
                      +..++++|+++.++++.... .+..|.+||+.+++............ .+.|+|+++.++   .++.|++||+.+++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~-g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFD-GNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eecCcCCCCCCEEEEEEecC-CCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            56678899999988876432 24589999998887655544443433 488999998876   56689999998876655


Q ss_pred             eEeccCCCcee-------------------eeeecCCCccEEEe--cCCCCeeEEEEecCCeeeEEeecccccccEEEEc
Q 018248          129 QIETVVNPTGL-------------------CDVSQNAGPMVMAC--PGLLKGQVRVEDYGTKKSKYITAHASRIASIAMT  187 (359)
Q Consensus       129 ~~~~~~~~~~~-------------------~~~~~~~~~~~l~~--~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s  187 (359)
                      ....+......                   ..++|+++.+++..  .+..+..|++++........+..+...+..+.|+
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s  196 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR  196 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence            44433321111                   34567666532221  0135678888887766666666677788999999


Q ss_pred             c-CCcEEEEEeCC------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCC
Q 018248          188 L-DGRFVATASSK------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVD  255 (359)
Q Consensus       188 ~-~~~~l~~~~~d------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~  255 (359)
                      | +++.|+..+.+      .. |.+||+..++.. .+..+.....+..++|+|||++|+.++.+     +.|++||+.++
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~-l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDAR-MWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCC-CEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CCCCCEEEEEecCCCCCCCce-EEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            9 88877766543      35 899998766543 33322112368889999999988776543     44999999876


Q ss_pred             C
Q 018248          256 S  256 (359)
Q Consensus       256 ~  256 (359)
                      +
T Consensus       275 ~  275 (396)
T 3c5m_A          275 E  275 (396)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.9e-16  Score=145.60  Aligned_cols=250  Identities=10%  Similarity=0.064  Sum_probs=161.0

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCccee---------EEEEe--cceeE-EE--e
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVK---------NVRLR--RDRIV-VV--L  112 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~---------~~~~~--~~~~~-~~--~  112 (359)
                      +|...+..++++  ++.++++......++...||....+.....+. +...+.         ...|+  ||++. ++  .
T Consensus        21 ~~~~~~~~~~~s--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           21 SRSGRPACVGAV--GDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             HTCSCCEEEEEE--TTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             hcCCccceeEEc--CCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            577777777776  55676666411146889999854444444454 555555         66666  99987 66  3


Q ss_pred             --cCeEEEEEcc--cceeeeeEec-----cCCCceeeeeecCCCccEEEecCCCC----------eeEEEEecCC-----
Q 018248          113 --NQKVYVYNFT--DLKLVDQIET-----VVNPTGLCDVSQNAGPMVMACPGLLK----------GQVRVEDYGT-----  168 (359)
Q Consensus       113 --d~~i~i~d~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~g~~d----------~~v~~~~~~~-----  168 (359)
                        +..|+++++.  .......+..     +...+..++|+|+++.++.+.   .+          ..|++|+..+     
T Consensus        99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA---EEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEE---EEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEE---ecccCCCCCCceeEEEEEECCCCcccc
Confidence              4567777764  2033344443     344566789999998744333   23          5788888887     


Q ss_pred             -eeeEEee-cccccccEEEEccCCcEEEEEeCCC--------CeEEEEEcC-CC--cEEEEeecCCCCcceEEEEecCCC
Q 018248          169 -KKSKYIT-AHASRIASIAMTLDGRFVATASSKG--------TLIRVFNTM-DG--SLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       169 -~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg--------~~i~iwd~~-~~--~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                       .....+. .+...+..++|||||++|+.++.++        . |++||+. ++  .....+..+ +...+..++|+|||
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~-i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg  253 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE-LKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDG  253 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE-EEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTS
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE-EEEEEECCCCcccccEEeCCC-CCceEcceEECCCC
Confidence             6667776 6677888999999999999887553        5 9999998 56  133333322 45689999999999


Q ss_pred             CEEEEEcCCCc--EEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248          236 QWLAASSDKGT--VHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV  313 (359)
Q Consensus       236 ~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  313 (359)
                      +++++++.++.  |.+||+.+++....    .                      ........+.|.        -.+..+
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l----~----------------------~~~~~~~~p~w~--------~~~~~~  299 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQL----C----------------------RREEEFAGPLWT--------PGMRWF  299 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEES----S----------------------CCSSBSSCCCCS--------TTCCSE
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeec----c----------------------cccccccCcccc--------ccCceE
Confidence            98888888884  55555544431100    0                      000000000000        013458


Q ss_pred             eecccCCEEEEEecCCeEEEEEeCCC
Q 018248          314 GFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       314 ~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                      +|+|+++.+++++. |.+++|.++..
T Consensus       300 ~~~~~~~~~~~~~~-~~~~l~~~d~~  324 (662)
T 3azo_A          300 APLANGLIAVVHGK-GAAVLGILDPE  324 (662)
T ss_dssp             EECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred             eEeCCCEEEEEEEc-CccEEEEEECC
Confidence            89999999999998 99999988764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=7.7e-15  Score=122.78  Aligned_cols=218  Identities=10%  Similarity=0.064  Sum_probs=151.4

Q ss_pred             CCceEEEEcCCCcceeeeecc-cCC--CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEE
Q 018248           26 ETGFRVYLSDPYKPIMRRDFD-RNP--RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVR  102 (359)
Q Consensus        26 d~~i~iw~~~~~~~~~~~~~~-~~h--~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~  102 (359)
                      +++|.+||.++++........ .+.  ......+.+  +++.+.++..   .++.|.+||..+++.+.++........++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~---~~~~v~viD~~t~~~~~~i~~~~~p~~i~   90 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVN---NSHVIFAIDINTFKEVGRITGFTSPRYIH   90 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEG---GGTEEEEEETTTCCEEEEEECCSSEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEc---CCCEEEEEECcccEEEEEcCCCCCCcEEE
Confidence            688999999986543211000 011  122333443  4566655554   35899999999999999887667789999


Q ss_pred             EecceeEEE-e--cCeEEEEEcccceeeeeEeccCC-----CceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEE
Q 018248          103 LRRDRIVVV-L--NQKVYVYNFTDLKLVDQIETVVN-----PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKY  173 (359)
Q Consensus       103 ~~~~~~~~~-~--d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~  173 (359)
                      +++++.+.+ .  ++.|.+||..+++....+.....     ....+++  +++.++++. ...++.|.+++.. .+....
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~-~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC-WSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE-CTTCCEEEEEETTTTEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc-CCCCCEEEEEECCCCeEEEE
Confidence            988886665 3  78999999999988877765440     2234555  455544443 2136788887665 455555


Q ss_pred             eecccccccEEEEccCCcEEEEEeCC----------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248          174 ITAHASRIASIAMTLDGRFVATASSK----------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       174 ~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                      +.. ......++++|+|++++++..+          +. |.++|..+++....+... ....+..++|+|+++.|.++..
T Consensus       168 i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          168 LTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             EEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS
T ss_pred             EEc-CCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc
Confidence            544 3345789999999977776554          67 999999999887777542 1236899999999999988765


Q ss_pred             CCcEEEEEccCCC
Q 018248          244 KGTVHVFGLKVDS  256 (359)
Q Consensus       244 dg~i~iw~~~~~~  256 (359)
                        .|.+||..+++
T Consensus       245 --~v~~~d~~t~~  255 (328)
T 3dsm_A          245 --DIWRMPVEADR  255 (328)
T ss_dssp             --SEEEEETTCSS
T ss_pred             --EEEEEECCCCc
Confidence              89999998766

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=1.3e-15  Score=129.14  Aligned_cols=266  Identities=13%  Similarity=0.065  Sum_probs=172.5

Q ss_pred             cCCCEEEEec-------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEec-------CCCCCCeEEEE
Q 018248           16 QDHGCFATGT-------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS-------GPHQSNKVMIW   81 (359)
Q Consensus        16 ~~g~~l~~~~-------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------~~~~d~~i~iw   81 (359)
                      ++++++.+..       |+.|.+||.++++...  .+. .+..+  .++++++++.++++..       +. .++.|.+|
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~--~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~-~~~~v~v~   86 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLG--MVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGK-RSDVVEVW   86 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEE--EEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSC-EEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEE--Eec-CCCCC--ceEECCCCCEEEEEEecccccccCC-CCCEEEEE
Confidence            3566665532       5689999998876553  333 22333  7889999998887752       11 25789999


Q ss_pred             ECCCccEEeeec-c------CcceeEEEEecceeEEE---e--cCeEEEEEcccceeeee-EeccCCCceeeeeecCCCc
Q 018248           82 DDHENRYLGELS-F------RSEVKNVRLRRDRIVVV---L--NQKVYVYNFTDLKLVDQ-IETVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        82 d~~~~~~~~~~~-~------~~~v~~~~~~~~~~~~~---~--d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  148 (359)
                      |..+++.+.++. .      ......++++|+|++++   .  ++.|.+||+.+++.+.. +....  ...+.+.|++..
T Consensus        87 d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~  164 (361)
T 2oiz_A           87 DADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPR  164 (361)
T ss_dssp             ETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSS
T ss_pred             ECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCe
Confidence            999999888876 2      24577899999998876   2  57899999999988777 54321  122456676654


Q ss_pred             cEEEecCCCCeeEEEEecC--CeeeEE------eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE--EEEee
Q 018248          149 MVMACPGLLKGQVRVEDYG--TKKSKY------ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL--LQEMR  218 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~--~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~--~~~~~  218 (359)
                      .+++.  +.||.+.++...  ++....      +.....+ ..+.++|++..++..+.++. |.++|+.....  ...+.
T Consensus       165 ~~~~~--~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~~~~  240 (361)
T 2oiz_A          165 SFMTI--CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDGPWS  240 (361)
T ss_dssp             EEEEE--ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEEEEE
T ss_pred             eEEEE--CCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCe-EEEEEecCCCceeccccc
Confidence            44443  246777665443  333211      1122222 23345678888888888898 99999875542  22221


Q ss_pred             cCC--------CCcceEEEEecCCCCEEEEEcC-----------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248          219 RGA--------ERAEIYSLAFSSNAQWLAASSD-----------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA  279 (359)
Q Consensus       219 ~~~--------~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (359)
                      ...        .+.....++|+|+++.++++..           .+.|.+||+.+.+..                     
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v---------------------  299 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV---------------------  299 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE---------------------
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE---------------------
Confidence            100        0111223789999888776543           347999999886511                     


Q ss_pred             eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                           ..+..+.  +..++|+|||++|++++. +.|.+|+...
T Consensus       300 ---------------------~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t  334 (361)
T 2oiz_A          300 ---------------------ARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ  334 (361)
T ss_dssp             ---------------------EEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred             ---------------------EEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence                                 1122223  678999999999999887 9999997765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=3.6e-15  Score=137.64  Aligned_cols=279  Identities=9%  Similarity=0.042  Sum_probs=174.2

Q ss_pred             ccCCCEEEEec-CC---ceEEEEcC--CCcceeeee---cccCCCCceeEEEEeccCCEEEEEec--CCCCCCeEEEEEC
Q 018248           15 NQDHGCFATGT-ET---GFRVYLSD--PYKPIMRRD---FDRNPRGGTQLVSMLFRSNIICLVNS--GPHQSNKVMIWDD   83 (359)
Q Consensus        15 s~~g~~l~~~~-d~---~i~iw~~~--~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~--~~~~d~~i~iwd~   83 (359)
                      +|+|++++... ++   .-.+|..+  .++......   +..+|...+..++|+|+++.+++...  +. .+..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~-~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA-DEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC-SCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC-ceEEEEEEEC
Confidence            48999987776 43   34555543  333322222   11245556888899999999887653  22 3579999999


Q ss_pred             CCccEE-eeeccCcceeEEEEecceeEEE---ecCe-------------EEEEEcccce----eeeeEeccCCCceeeee
Q 018248           84 HENRYL-GELSFRSEVKNVRLRRDRIVVV---LNQK-------------VYVYNFTDLK----LVDQIETVVNPTGLCDV  142 (359)
Q Consensus        84 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~---~d~~-------------i~i~d~~~~~----~~~~~~~~~~~~~~~~~  142 (359)
                      .+++.+ ...-.......++|+|||+.++   .+..             |++|++.+++    .+.....+...+..+.+
T Consensus       155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            999865 2111111226899999998777   3433             9999997765    22222223345667889


Q ss_pred             ecCCCccEEEecCC-CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe---CCCCeEEEEEcCCCcE--EEE
Q 018248          143 SQNAGPMVMACPGL-LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS---SKGTLIRVFNTMDGSL--LQE  216 (359)
Q Consensus       143 ~~~~~~~~l~~~g~-~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~~i~iwd~~~~~~--~~~  216 (359)
                      +|+++.+++..... ....|++++......+.+..+...+....+ ++|.+++...   .++. |.+||+.+++.  ...
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~~~~~  312 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARASWKE  312 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGGGCEE
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCccCCeE
Confidence            99998755443211 123566665544456666666666777766 6676444443   2467 99999877653  223


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEec
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS  296 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (359)
                      +..+.....+..++|+ ++.++++...|+..+||.+......                                      
T Consensus       313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~--------------------------------------  353 (695)
T 2bkl_A          313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP--------------------------------------  353 (695)
T ss_dssp             EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE--------------------------------------
T ss_pred             EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe--------------------------------------
Confidence            3322224568889998 7788888999999888877632100                                      


Q ss_pred             ccceeEEeec-CCcEEEeeecccCCEEEEEec----CCeEEEEEeCC
Q 018248          297 KWSMAQFRLP-ENVQYLVGFGRQNNTIVIVGL----DGSYYKCEFDP  338 (359)
Q Consensus       297 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~----dg~i~v~~~~~  338 (359)
                         ...+.++ .+.+..++++|+++.|+....    .+.|++|++..
T Consensus       354 ---~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          354 ---VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             ---EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             ---eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence               0001223 356677889999887774433    57888888764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=8.6e-15  Score=135.51  Aligned_cols=279  Identities=9%  Similarity=-0.023  Sum_probs=176.8

Q ss_pred             cCCCEEEEec-C-Cc--eEEEEcC--CCcceeee---ecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEEECCC
Q 018248           16 QDHGCFATGT-E-TG--FRVYLSD--PYKPIMRR---DFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIWDDHE   85 (359)
Q Consensus        16 ~~g~~l~~~~-d-~~--i~iw~~~--~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~~~   85 (359)
                      |+|++++... + +.  -.+|-.+  .++.....   .+..+|...+..++|+|+++.+++...... ....|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8999887665 3 22  2455543  33322111   222234445778899999999988764210 123899999999


Q ss_pred             ccEEeeeccCcceeEEEEecceeEEE---ecC----------------eEEEEEcccceee--eeEec--cCCCceeeee
Q 018248           86 NRYLGELSFRSEVKNVRLRRDRIVVV---LNQ----------------KVYVYNFTDLKLV--DQIET--VVNPTGLCDV  142 (359)
Q Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~----------------~i~i~d~~~~~~~--~~~~~--~~~~~~~~~~  142 (359)
                      ++.+........+..++|+||++.++   .++                .|++|++.+++..  ..+..  +......+.+
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            98776433333477899999998776   333                3999999776522  22222  2333457889


Q ss_pred             ecCCCccEEEecCCC--CeeEEEEecCC------e--eeEEeecccccccEEEEccCCcEEEEEeC----CCCeEEEEEc
Q 018248          143 SQNAGPMVMACPGLL--KGQVRVEDYGT------K--KSKYITAHASRIASIAMTLDGRFVATASS----KGTLIRVFNT  208 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~--d~~v~~~~~~~------~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~~i~iwd~  208 (359)
                      +|+++.+++.+....  +..|++++...      .  ....+..+...+.. .|+|+|+.|+..+.    .+. |.+||+
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~  318 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF  318 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence            999987555442111  56888877754      2  46667666666655 58899987776654    235 899999


Q ss_pred             CCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcE--EEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          209 MDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV--HVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       209 ~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i--~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                      .+++  ....+..+.....+..++|++++.++++...++..  .+|++.+++..                          
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~--------------------------  372 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL--------------------------  372 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE--------------------------
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE--------------------------
Confidence            8764  12344432222368889999888888888888864  55555444310                          


Q ss_pred             EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec----CCeEEEEEeCC
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL----DGSYYKCEFDP  338 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~v~~~~~  338 (359)
                                      ..+..+.+.+..++++|+++.|+....    .+.++.|++..
T Consensus       373 ----------------~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          373 ----------------KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             ----------------EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             ----------------EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence                            112334567788899999877664432    57888887754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=6e-14  Score=124.96  Aligned_cols=276  Identities=12%  Similarity=0.116  Sum_probs=184.1

Q ss_pred             cCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC--CccEEeee
Q 018248           16 QDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH--ENRYLGEL   92 (359)
Q Consensus        16 ~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~   92 (359)
                      +.+.++++.. ++.|.++|.++++.......    ...+..+.++++++++++++    .++.|.+||+.  +++.+.++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~----g~~p~~v~~SpDGr~lyv~~----~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT----GYAVHISRLSASGRYLFVIG----RDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC----CCCccceEECCCCCEEEEEc----CCCeEEEEECCCCCCcEeEEE
Confidence            4444556666 89999999998766644433    34556888999999888776    67999999995  88888888


Q ss_pred             ccCcceeEEEEe----cceeEEE----ecCeEEEEEcccceeeeeEeccC----------C-CceeeeeecCCCccEEEe
Q 018248           93 SFRSEVKNVRLR----RDRIVVV----LNQKVYVYNFTDLKLVDQIETVV----------N-PTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        93 ~~~~~v~~~~~~----~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~l~~  153 (359)
                      ........++|+    |+|++++    .+++|.++|..+.+.+..+....          . .+..+..++++...+ +.
T Consensus       237 ~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v-v~  315 (567)
T 1qks_A          237 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI-VN  315 (567)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE-EE
T ss_pred             ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE-EE
Confidence            766667899999    6997776    77999999999999888876421          1 334556666655433 33


Q ss_pred             cCCCCeeEEEEecCCe-e--eEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeec-CC--CCcce
Q 018248          154 PGLLKGQVRVEDYGTK-K--SKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRR-GA--ERAEI  226 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~-~--~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~-~~--~~~~i  226 (359)
                       -...|.|.+.+.... .  +..+ ........+.|+|+|+++++++ .++. |.++|+.+++.+..+.. +.  |.+.-
T Consensus       316 -~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g  392 (567)
T 1qks_A          316 -VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRG  392 (567)
T ss_dssp             -ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred             -ecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCccc
Confidence             346788888665432 1  2222 2234566889999999887766 4566 99999999998877765 32  32222


Q ss_pred             EEEEecCCCCE-EEEEc-CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248          227 YSLAFSSNAQW-LAASS-DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR  304 (359)
Q Consensus       227 ~~~~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      ..+ ++|++.. .++.. .++.|.++|..+.+...                     ..+..+              .++.
T Consensus       393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~---------------------~~~kvv--------------~~i~  436 (567)
T 1qks_A          393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD---------------------NAWKIL--------------DSFP  436 (567)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------------------TBTSEE--------------EEEE
T ss_pred             eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc---------------------ccCEEE--------------EEEe
Confidence            222 5787554 44543 46899999998743110                     000001              1122


Q ss_pred             ecCCcEEEeeecccCCEEEEEec-------CCeEEEEEeCCC
Q 018248          305 LPENVQYLVGFGRQNNTIVIVGL-------DGSYYKCEFDPM  339 (359)
Q Consensus       305 ~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~v~~~~~~  339 (359)
                      ...+.-.-+..+|++++|++...       .+.|.|+++...
T Consensus       437 ~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          437 ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            22212133668999999998773       358999988754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=5.2e-15  Score=124.95  Aligned_cols=225  Identities=11%  Similarity=0.096  Sum_probs=150.3

Q ss_pred             ceEEEEEccCCCEEEEec-C---Cc--eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC--------
Q 018248            8 TIHHLALNQDHGCFATGT-E---TG--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH--------   73 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d---~~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--------   73 (359)
                      .+..++|||||++|+.++ +   +.  |.+|++++++.......    .. +..+.|+|+++.+++++....        
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE----SE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC----CC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            467899999999998877 3   33  77778876554433322    23 888899999998888763200        


Q ss_pred             ---------------CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-e--c------C-eEEEEEcccceeee
Q 018248           74 ---------------QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-L--N------Q-KVYVYNFTDLKLVD  128 (359)
Q Consensus        74 ---------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~--d------~-~i~i~d~~~~~~~~  128 (359)
                                     ....|.+||+.+++.+..+... .+..+.|+|++ +++ .  +      . ...+|.+.+++. .
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~  211 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-E  211 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-E
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-E
Confidence                           1367999999888774444433 78899999999 555 2  1      2 334444435543 3


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCC-----CCeeEEEEecCCeeeEEeecccccccE-EEEccCCcEEEEEeCCCCe
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGL-----LKGQVRVEDYGTKKSKYITAHASRIAS-IAMTLDGRFVATASSKGTL  202 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~d~~v~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~~  202 (359)
                      .+..+ ..  ...++|+++.++++....     ....|.+++ .++.......+...+.. +.|+ ++ ++++++.++. 
T Consensus       212 ~l~~~-~~--~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-  284 (347)
T 2gop_A          212 KMFEK-VS--FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-  284 (347)
T ss_dssp             EEEEE-ES--EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-
T ss_pred             EeccC-cc--eeeECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-
Confidence            33333 32  334489988754443111     134677777 55544444556677886 9999 88 8889999998 


Q ss_pred             EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcE-EEEEcc
Q 018248          203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV-HVFGLK  253 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-~iw~~~  253 (359)
                      ++|| +.+++....+.   +...|.+++|+|  .++++++.++.. .||.++
T Consensus       285 ~~l~-~~~g~~~~~~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          285 VNLY-IWDGEIKPIAK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEE-EESSSEEEEEC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEEE-EcCCceEEEec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            9999 87666544333   356899999999  677777777664 788776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=3.3e-14  Score=117.31  Aligned_cols=230  Identities=10%  Similarity=0.067  Sum_probs=156.2

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK  125 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~  125 (359)
                      ......+.|.++++.+++++.   .++.|..|+..++  ...+. +...+.++++++++.+++   .++.|.+||..+++
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~---~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDV---RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEG---GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             CccccCCeEeCCCCEEEEEeC---CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            445567888888885555554   4689999998877  45554 667789999999998777   35789999987776


Q ss_pred             eeeeEecc----CCCceeeeeecCCCccEEEec---CC-------------CCeeEEEEecCCeeeEEeecccccccEEE
Q 018248          126 LVDQIETV----VNPTGLCDVSQNAGPMVMACP---GL-------------LKGQVRVEDYGTKKSKYITAHASRIASIA  185 (359)
Q Consensus       126 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~---g~-------------~d~~v~~~~~~~~~~~~~~~~~~~i~~~~  185 (359)
                      ........    ...+..+++++++.  ++++.   |.             ..+.|..++.. .....+..+......++
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~  178 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLA  178 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEE
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEE
Confidence            54333221    12345678888775  34431   11             12355555555 34445555666778999


Q ss_pred             EccCCcEEEEEeCCCCeEEEEEcC-CCcE---EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCC
Q 018248          186 MTLDGRFVATASSKGTLIRVFNTM-DGSL---LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGT  261 (359)
Q Consensus       186 ~s~~~~~l~~~~~dg~~i~iwd~~-~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  261 (359)
                      |+|+++.|++.+.++. |.+|++. +++.   ...+ . .+...+..++++++|+++++.  ++.|.+|+.+ ++.    
T Consensus       179 ~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~----  248 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE----  248 (296)
T ss_dssp             ECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE----
T ss_pred             ECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE----
Confidence            9999998877777788 9999986 5554   3344 2 244567889999999977766  7789999976 330    


Q ss_pred             CccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee-cccCCEEEEEecCCeEEEEEeCCC
Q 018248          262 SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF-GRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                                            +..+..+.+ +..++| +|+++.|++++.+|   +|.+++.
T Consensus       249 --------------------------------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~  285 (296)
T 3e5z_A          249 --------------------------------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIETN  285 (296)
T ss_dssp             --------------------------------------EEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred             --------------------------------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence                                                  111334455 778999 58999999998874   4555553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=1.9e-15  Score=139.55  Aligned_cols=244  Identities=11%  Similarity=-0.017  Sum_probs=160.1

Q ss_pred             CCCCceEEEEEccCCCEEEEec------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC----
Q 018248            4 PDPITIHHLALNQDHGCFATGT------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH----   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~----   73 (359)
                      .|...+..++|||||++||.+.      +..|++||+++++......+.   ......++|+++++.+++++....    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCCc
Confidence            3455789999999999998543      357999999987653111221   111256889999999988873210    


Q ss_pred             -----CCCeEEEEECCCcc----EEeeec-cCcceeEEEEecceeEEE---ecC----eEEEEEcccceeeeeEeccCCC
Q 018248           74 -----QSNKVMIWDDHENR----YLGELS-FRSEVKNVRLRRDRIVVV---LNQ----KVYVYNFTDLKLVDQIETVVNP  136 (359)
Q Consensus        74 -----~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~---~d~----~i~i~d~~~~~~~~~~~~~~~~  136 (359)
                           ....|++|++.+++    .+.... +...+..+.|+|+|++++   .++    .|++++..+++ ...+..+...
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~  273 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGA  273 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCc
Confidence                 02349999998876    232322 445788999999998777   444    67777665444 3344444444


Q ss_pred             ceeeeeecCCCccEEEec-CCCCeeEEEEecCCee---eEEeecc--cccccEEEEccCCcEEEEEeCCCCeEEEEEcC-
Q 018248          137 TGLCDVSQNAGPMVMACP-GLLKGQVRVEDYGTKK---SKYITAH--ASRIASIAMTLDGRFVATASSKGTLIRVFNTM-  209 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~-g~~d~~v~~~~~~~~~---~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~-  209 (359)
                      .....+ ++++ +++.+. +..++.|.+|+.....   ...+..+  ...+..++|+ ++.++++...|+. .+||.+. 
T Consensus       274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~  349 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATL  349 (695)
T ss_dssp             CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEET
T ss_pred             eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeC
Confidence            444444 6666 544432 1135788888876533   2444433  4467888888 7778888888988 8887654 


Q ss_pred             CCcEEEEeecCCCCcceEEEEecCCCCEEEEEc----CCCcEEEEEccCCC
Q 018248          210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS----DKGTVHVFGLKVDS  256 (359)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~  256 (359)
                      +++....+..+ ..+.+..++++|+++.|+...    ..++|++||+.+++
T Consensus       350 ~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          350 KGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            46666666532 256788899999998776332    34789999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=2.2e-14  Score=116.62  Aligned_cols=175  Identities=13%  Similarity=0.125  Sum_probs=138.6

Q ss_pred             CCCeEEEEECCCccEEeeeccC--cceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccC-CCceeeeeecCCCcc
Q 018248           74 QSNKVMIWDDHENRYLGELSFR--SEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVV-NPTGLCDVSQNAGPM  149 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  149 (359)
                      .++.|.+||.++|+.+.++...  ..+.++.+.|+|++++ .++.|+.||. +++.+..+..+. ..+..+.+.++++. 
T Consensus        13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~-   90 (276)
T 3no2_A           13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNA-   90 (276)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCE-
T ss_pred             CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCE-
Confidence            5799999998899999999833  4789999999999888 8889999998 899999988643 34556777777764 


Q ss_pred             EEEecCCCCeeEEEEecCCeeeEEeec------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          150 VMACPGLLKGQVRVEDYGTKKSKYITA------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                       +++.+..++.+..++.+++.+..+..      +......+++.++|+++++...++. |..||.. |+.+.++..+   
T Consensus        91 -lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-G~~~w~~~~~---  164 (276)
T 3no2_A           91 -LVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-GQLLNSVKLS---  164 (276)
T ss_dssp             -EEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-SCEEEEEECS---
T ss_pred             -EEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-CCEEEEEECC---
Confidence             44322225667667778877766542      2234566788999999999999999 9999987 9999998753   


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..+.++...++|+++++++.++.|..+|.++++
T Consensus       165 ~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          165 GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            356678888999999998888899999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=1.6e-12  Score=107.15  Aligned_cols=232  Identities=9%  Similarity=0.006  Sum_probs=154.3

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      +...+.+++++++|+++++.. ++.|.+|+.+ ++.. ..... .+...+..+++.+++...+...    .++.|..||.
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~   85 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLP-TPDAKVMCLTISSDGEVWFTEN----AANKIGRITK   85 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECS-STTCCEEEEEECTTSCEEEEET----TTTEEEEECT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCC-cccCceeeEEECCCCCEEEeCC----CCCeEEEECC
Confidence            346799999999999888777 7889999988 4332 22221 2345667777776665433322    3588999997


Q ss_pred             CCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCC
Q 018248           84 HENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        84 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      . ++. ..+.   ....+.++++.+++.+++   .++.|.+||. +++..... .........+++.+++. ++++  ..
T Consensus        86 ~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~--~~  159 (299)
T 2z2n_A           86 K-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFT--EN  159 (299)
T ss_dssp             T-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEE--ET
T ss_pred             C-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEE--eC
Confidence            5 432 2222   345788999999887766   3679999998 55443221 22233456677777663 3333  33


Q ss_pred             CCeeEEEEecCCeeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248          157 LKGQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       157 ~d~~v~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                      .++.|..++.+++.... .......+..++++++|++.++...++. |.+||. +++... +........+.+++++++|
T Consensus       160 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEITE-FKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECSTT
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEEE-EECCCCCCCceeEEECCCC
Confidence            45677777765443322 2334456789999999997776666777 999998 666443 3222234678999999999


Q ss_pred             CEEEEEcCCCcEEEEEc
Q 018248          236 QWLAASSDKGTVHVFGL  252 (359)
Q Consensus       236 ~~l~~~~~dg~i~iw~~  252 (359)
                      +++++...++.|.+||.
T Consensus       237 ~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          237 DLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CEEEEETTTTEEEEEET
T ss_pred             CEEEeccCCceEEEECC
Confidence            97777667788999998

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=1.2e-12  Score=116.62  Aligned_cols=291  Identities=12%  Similarity=0.082  Sum_probs=184.8

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcC--CCcceeeeecccCCCCceeEEEEe----ccCCEEEEEecCCCCCCeEE
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSD--PYKPIMRRDFDRNPRGGTQLVSML----FRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~~~~~~~~~~d~~i~   79 (359)
                      ..+..+.|+|||+++++++ ++.|.+||+.  +.+..  ..+.  -......++++    ++++.++++..   .++.|.
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~---~~~~v~  269 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIK--IGSEARSIETSKMEGWEDKYAIAGAY---WPPQYV  269 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEE--CCSEEEEEEECCSTTCTTTEEEEEEE---ETTEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEe--cCCCCceeEEccccCCCCCEEEEEEc---cCCeEE
Confidence            4567899999999998888 8999999995  55444  3332  13345678888    58888877664   459999


Q ss_pred             EEECCCccEEeeeccC------------cceeEEEEecceeEEE----ecCeEEEEEcccceeee--eEeccCCCceeee
Q 018248           80 IWDDHENRYLGELSFR------------SEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVD--QIETVVNPTGLCD  141 (359)
Q Consensus        80 iwd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~  141 (359)
                      ++|..+.+.+..+...            ..+..+..++++..++    ..|.|.++|..+.+.+.  .+.. ........
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~  348 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGG  348 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEE
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCce
Confidence            9999999988876521            2567788888754443    67999999986653322  2222 22334578


Q ss_pred             eecCCCccEEEecCCCCeeEEEEecCC-eeeEEeec-ccc--cccEEE-EccCCc-EEEEEe-CCCCeEEEEEcCC----
Q 018248          142 VSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITA-HAS--RIASIA-MTLDGR-FVATAS-SKGTLIRVFNTMD----  210 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~-~~~--~i~~~~-~s~~~~-~l~~~~-~dg~~i~iwd~~~----  210 (359)
                      |+|+++.++++..  .++.|.+++... +.+..+.. ...  +-..+. ++|++. ..+++. .++. |.++|..+    
T Consensus       349 ~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~-Vsvid~~~~~~~  425 (567)
T 1qks_A          349 LDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS-VALIGTDPEGHP  425 (567)
T ss_dssp             ECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE-EEEEECCTTTCT
T ss_pred             ECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCe-EEEecCCCCCCc
Confidence            8999887655542  466788865554 44444433 111  112233 578744 445554 4577 99999987    


Q ss_pred             ---CcEEEEeecCCCCcceEEEEecCCCCEEEEEcC-------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248          211 ---GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD-------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI  280 (359)
Q Consensus       211 ---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (359)
                         .+.+.++...  ...-..+..+|++++|.+...       .+.|.|+|+.+.+..                 |... 
T Consensus       426 ~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-----------------g~~~-  485 (567)
T 1qks_A          426 DNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD-----------------GSDP-  485 (567)
T ss_dssp             TTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS-----------------SSCC-
T ss_pred             cccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc-----------------ccCC-
Confidence               6678888753  223345778999999988663       358999999986210                 0000 


Q ss_pred             eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec-----CCeEEEEEeCC
Q 018248          281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-----DGSYYKCEFDP  338 (359)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~v~~~~~  338 (359)
                       .+..+..       ..|+  .+.-....+..+.|+|+|+.+.++..     ++.|.|++..+
T Consensus       486 -~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t  538 (567)
T 1qks_A          486 -EFKTLPI-------AEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  538 (567)
T ss_dssp             -CEEEECH-------HHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             -CcEEecc-------cccc--ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence             0000000       0000  00001235677999999999887743     78999975544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=1.3e-13  Score=113.62  Aligned_cols=229  Identities=8%  Similarity=0.007  Sum_probs=156.1

Q ss_pred             CCceEEEEEccCCC-EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            6 PITIHHLALNQDHG-CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         6 ~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .....+++|+|+|+ +++++. ++.|..|+.+++  .  ..+. .+...+..+++.++++.++...    .++.|.+||.
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~-~~~~~~~~l~~~~dg~l~v~~~----~~~~i~~~d~   97 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L--SPEM-HPSHHQNGHCLNKQGHLIACSH----GLRRLERQRE   97 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--EEEE-SSCSSEEEEEECTTCCEEEEET----TTTEEEEECS
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--EEEE-CCCCCcceeeECCCCcEEEEec----CCCeEEEEcC
Confidence            44567899999998 667777 899999999875  2  2222 3466678888888777544333    3589999998


Q ss_pred             CCccEEeeec-c----CcceeEEEEecceeEEEe--------------------cCeEEEEEcccceeeeeEeccCCCce
Q 018248           84 HENRYLGELS-F----RSEVKNVRLRRDRIVVVL--------------------NQKVYVYNFTDLKLVDQIETVVNPTG  138 (359)
Q Consensus        84 ~~~~~~~~~~-~----~~~v~~~~~~~~~~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~~~  138 (359)
                      .+++...... .    ...+.+++++|+|.+++.                    .+.|..++.. ++ ...+........
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~  175 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN  175 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence            8887554332 1    234678999999987773                    2356666654 43 333444444556


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecC--Cee---eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYG--TKK---SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL  213 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~  213 (359)
                      .++++|+++.+  ++ ...++.|.+|+..  +..   ...+..+...+..++++++|+++++.  ++. |.+||.. ++.
T Consensus       176 gi~~s~dg~~l--v~-~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g~~  248 (296)
T 3e5z_A          176 GLAFLPSGNLL--VS-DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-GDE  248 (296)
T ss_dssp             EEEECTTSCEE--EE-ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-SCE
T ss_pred             cEEECCCCCEE--EE-eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-CCE
Confidence            78999988763  33 4457788887764  322   22333345567889999999976665  677 9999975 788


Q ss_pred             EEEeecCCCCcceEEEEe-cCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          214 LQEMRRGAERAEIYSLAF-SSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +..+..  +.. +.+++| +|+++.|++++.++ +.-++.++.+
T Consensus       249 ~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          249 LGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             EEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             EEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            777775  334 889999 68999888887764 4445555443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=8e-14  Score=113.27  Aligned_cols=234  Identities=10%  Similarity=-0.009  Sum_probs=155.9

Q ss_pred             ceEEEEEccCCCEEE-Eec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            8 TIHHLALNQDHGCFA-TGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~-~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ...+++++++|++++ +.. ++.|.+|+..+...... ..  .+...+..+++.++++ +.++.    .++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~--~~~~~p~~i~~~~~g~-l~v~~----~~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PF--NGLYQPQGLAVDGAGT-VYVTD----FNNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CC--CSCCSCCCEEECTTCC-EEEEE----TTTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-ee--CCcCCcceeEECCCCC-EEEEc----CCCEEEEEeCCC
Confidence            678999999999777 545 78899998765432211 11  2234566777777666 44444    248999999765


Q ss_pred             ccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee
Q 018248           86 NRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ  160 (359)
Q Consensus        86 ~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~  160 (359)
                      .... .+.  ....+.++++++++.+++   .++.|.+|+..+................+++.+++. ++++.  ..++.
T Consensus        97 ~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~~  172 (270)
T 1rwi_B           97 NNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNNR  172 (270)
T ss_dssp             SCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEE--GGGTE
T ss_pred             ceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEE--CCCCE
Confidence            5433 332  235788999999987666   467899997644433222222223456678888775 44433  24668


Q ss_pred             EEEEecCCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          161 VRVEDYGTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       161 v~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      |.+++..+...... ..+...+..++++++|.++++...++. |.+||........ .... +...+.+++++++|++++
T Consensus       173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~-~~~~-~~~~p~~i~~~~~g~l~v  249 (270)
T 1rwi_B          173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTV-LPFT-GLNTPLAVAVDSDRTVYV  249 (270)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEE-CCCC-SCSCEEEEEECTTCCEEE
T ss_pred             EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCccee-eccC-CCCCceeEEECCCCCEEE
Confidence            88888776554433 223356789999999987777777888 9999986554332 2211 235789999999999888


Q ss_pred             EEcCCCcEEEEEccCCC
Q 018248          240 ASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       240 ~~~~dg~i~iw~~~~~~  256 (359)
                      +...++.|+++++...+
T Consensus       250 ~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          250 ADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEGGGTEEEEECCCGGG
T ss_pred             EECCCCEEEEEcCCCcc
Confidence            88899999999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.7e-13  Score=111.36  Aligned_cols=211  Identities=10%  Similarity=0.045  Sum_probs=158.0

Q ss_pred             cCCCEEEEec-CCceEEEEcCCCcceeeeecccCCC-CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec
Q 018248           16 QDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR-GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS   93 (359)
Q Consensus        16 ~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~   93 (359)
                      ..+++|++++ ++.|.+||.++++.......   +. ..+..+.+.++++.++  +    .++.|..||. +++.+..+.
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~---~~~~~~~~~~~~pdG~ilv--s----~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPL---EKGWECNSVAATKAGEILF--S----YSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEEC---CTTCCCCEEEECTTSCEEE--E----CBSEEEEECT-TSCEEEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCC---CccCCCcCeEECCCCCEEE--e----CCCCEEEECC-CCCEEEEEc
Confidence            3467888888 99999999988888766554   23 3577888888887666  4    3588999998 899999988


Q ss_pred             c--CcceeEEEEecceeEEE---e-cCeEEEEEcccceeeeeEeccC------CCceeeeeecCCCccEEEecCCCCeeE
Q 018248           94 F--RSEVKNVRLRRDRIVVV---L-NQKVYVYNFTDLKLVDQIETVV------NPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        94 ~--~~~v~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      .  ...+.++.+.++|++++   . ++.|..+|. +++.+..+....      .....++..++++.  +++ ...++.|
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~--lv~-~~~~~~v  148 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY--LVP-LFATSEV  148 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE--EEE-ETTTTEE
T ss_pred             CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE--EEE-ecCCCEE
Confidence            3  35788999999999888   2 456777775 788777765321      12233455666653  444 4468899


Q ss_pred             EEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC----CCcceEEEEecCCCCE
Q 018248          162 RVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA----ERAEIYSLAFSSNAQW  237 (359)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~  237 (359)
                      ..++.+++.+..+... ..+.++.+.++|+.+++++.++. |..+|..+|+.+.++....    ....+..++..++|.+
T Consensus       149 ~~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i  226 (276)
T 3no2_A          149 REIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL  226 (276)
T ss_dssp             EEECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred             EEECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence            9999888888777654 45677888999999998888888 9999999999999886421    1124788899999998


Q ss_pred             EEEEc
Q 018248          238 LAASS  242 (359)
Q Consensus       238 l~~~~  242 (359)
                      +++..
T Consensus       227 ~v~~~  231 (276)
T 3no2_A          227 YICNW  231 (276)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88873

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=3.7e-13  Score=112.92  Aligned_cols=231  Identities=8%  Similarity=0.029  Sum_probs=152.2

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      +...+.+++|+|+|++++++. ++.|.+|+.++++......   .+...+..+++.++++..+.........+.|.+||.
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            345578999999999888887 8899999998765432221   235678888888877654443311000158999998


Q ss_pred             CCccEEeeec---cCcceeEEEEecceeEEE-e--------cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           84 HENRYLGELS---FRSEVKNVRLRRDRIVVV-L--------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        84 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~-~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                      .+++....+.   ....+.++.++|++.+++ .        .+.|..+|..+++... +.........++++|+++.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v  198 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWV  198 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEE
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEE
Confidence            8776543332   345689999999998777 2        2456666655444332 2222234567888998876554


Q ss_pred             EecCCCCeeEEEEecC--CeeeEEe--------ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248          152 ACPGLLKGQVRVEDYG--TKKSKYI--------TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~--~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      +.  ..++.|.+|+..  +.....+        .++ ..+..++++++|+++++...++. |.+||. +++.+..+....
T Consensus       199 ~~--~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~~~  273 (333)
T 2dg1_A          199 TE--TTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILIPG  273 (333)
T ss_dssp             EE--GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEECTT
T ss_pred             Ee--CCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEcCC
Confidence            43  346788887763  3322211        111 35788999999998877777788 999997 577777765421


Q ss_pred             C----CcceEEEEecCCCCEEEEEcCC
Q 018248          222 E----RAEIYSLAFSSNAQWLAASSDK  244 (359)
Q Consensus       222 ~----~~~i~~~~~s~~~~~l~~~~~d  244 (359)
                      .    ...+.+++|+||++.|+.++.+
T Consensus       274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          274 RDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CccccccCcceEEECCCCCEEEEEeCc
Confidence            1    1158899999998777665554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.65  E-value=8.4e-14  Score=129.45  Aligned_cols=241  Identities=11%  Similarity=0.036  Sum_probs=158.2

Q ss_pred             CceEEEEEccCCCEEEEec-C-C----ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-------
Q 018248            7 ITIHHLALNQDHGCFATGT-E-T----GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-------   73 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d-~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-------   73 (359)
                      ..+..++|||||++||.+. + |    .|++||+++++.... .+.   ...+..++|+++ +.+++++....       
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~---~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELK---WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEE---EEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCC---CceeccEEEECC-CEEEEEEecCcccccccc
Confidence            3688999999999998876 2 3    599999998765432 221   222356789999 88888774220       


Q ss_pred             ---CCCeEEEEECCCccE--Eeeec---cCcceeEEEEecceeEEE---ec-----CeEEEEEcccce-e-eeeEeccCC
Q 018248           74 ---QSNKVMIWDDHENRY--LGELS---FRSEVKNVRLRRDRIVVV---LN-----QKVYVYNFTDLK-L-VDQIETVVN  135 (359)
Q Consensus        74 ---~d~~i~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~---~d-----~~i~i~d~~~~~-~-~~~~~~~~~  135 (359)
                         ....|++|++.+++.  ...+.   +...+..+.|+|||++++   .+     ..|++||+.++. . ...+..+..
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence               034599999877652  22222   223588999999998777   33     389999997762 2 445544444


Q ss_pred             CceeeeeecCCCccEEEecC-CCCeeEEEEecCC--eeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC-C
Q 018248          136 PTGLCDVSQNAGPMVMACPG-LLKGQVRVEDYGT--KKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM-D  210 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g-~~d~~v~~~~~~~--~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~-~  210 (359)
                      ..... ++++++.+++.+.. ..++.|.+++...  ...+. +..+...+..++++ ++.++++...++. .+||.+. +
T Consensus       318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~  394 (741)
T 1yr2_A          318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD  394 (741)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC
Confidence            33333 45888876655421 1245677777665  23333 44445556677877 5667788888887 7777554 4


Q ss_pred             CcEEEEeecCCCCcceEEEEecCCCCEEEEE----cCCCcEEEEEccCCC
Q 018248          211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAAS----SDKGTVHVFGLKVDS  256 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iw~~~~~~  256 (359)
                      ++....+... +.+.+..+.++|+++.|+..    ...++|++||+.+++
T Consensus       395 g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          395 GKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             SCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            6666666532 35678999999998866532    234789999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=8.1e-13  Score=110.47  Aligned_cols=234  Identities=10%  Similarity=0.050  Sum_probs=157.9

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      .....+++. +++++++.. ++.|.+||.++++......    .......+++++++ .+ +++..  .++.|.+||..+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i~~~~~g-~l-yv~~~--~~~~v~~iD~~t  114 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYIHFLSDE-KA-YVTQI--WDYRIFIINPKT  114 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEEEEEETT-EE-EEEEB--SCSEEEEEETTT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEEEEeCCC-eE-EEEEC--CCCeEEEEECCC
Confidence            345677774 344555555 8899999999877654332    23556677776665 33 34432  369999999999


Q ss_pred             ccEEeeeccCc------ceeEEEEecceeEEE--e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           86 NRYLGELSFRS------EVKNVRLRRDRIVVV--L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        86 ~~~~~~~~~~~------~v~~~~~~~~~~~~~--~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ++....+....      ....+++ .++.+++  .  ++.|.++|+.+++.+..+..... ...++++++++ +++++.+
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~-l~v~~~~  191 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNK-MWTITDG  191 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSE-EEEEBCC
T ss_pred             CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCC-EEEEECC
Confidence            98887777444      6677888 4444444  2  78999999999998888876443 34677888775 3444322


Q ss_pred             CC--------CeeEEEEecC-CeeeEEeecc-cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248          156 LL--------KGQVRVEDYG-TKKSKYITAH-ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE  225 (359)
Q Consensus       156 ~~--------d~~v~~~~~~-~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  225 (359)
                      ..        .+.|.+++.. .+....+... ......++++|+++.|+++..  . |.+||..+++.............
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~~~~~  268 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEFRDTK  268 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCCCSSC
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecCCCCc
Confidence            10        2678887765 4444455432 236889999999999888765  7 99999988875321111101357


Q ss_pred             eEEEEecC-CCCEEEEE----cCCCcEEEEEccCCC
Q 018248          226 IYSLAFSS-NAQWLAAS----SDKGTVHVFGLKVDS  256 (359)
Q Consensus       226 i~~~~~s~-~~~~l~~~----~~dg~i~iw~~~~~~  256 (359)
                      ...++++| +++++++.    ..++.|.+||.+ ++
T Consensus       269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            88999999 56666666    578899999998 54

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=2.3e-13  Score=126.51  Aligned_cols=278  Identities=8%  Similarity=-0.014  Sum_probs=170.6

Q ss_pred             ccCCCEEEEec-CCc---eEEEEcC-----CCcceeeee---cccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEE
Q 018248           15 NQDHGCFATGT-ETG---FRVYLSD-----PYKPIMRRD---FDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIW   81 (359)
Q Consensus        15 s~~g~~l~~~~-d~~---i~iw~~~-----~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iw   81 (359)
                      +|+|++++... ++.   -.+|..+     .++......   +..+|...+...+|+|+++.+++...... ....|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            38999987766 433   5666554     222221111   22233346778899999999988764210 11579999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE---ec--------------CeEEEEEccccee--eeeEeccC--CCceee
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV---LN--------------QKVYVYNFTDLKL--VDQIETVV--NPTGLC  140 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d--------------~~i~i~d~~~~~~--~~~~~~~~--~~~~~~  140 (359)
                      |+.+++.+........+..++|+|| +.++   .+              ..|++|++.+++.  ...+....  ..+..+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999987654323333468899999 7666   22              2499999866542  22222222  235678


Q ss_pred             eeecCCCccEEEecCC--CCeeEEEEecCCe--e-eEEeecccccccEEEEccCCcEEEEEeC----CCCeEEEEEcCCC
Q 018248          141 DVSQNAGPMVMACPGL--LKGQVRVEDYGTK--K-SKYITAHASRIASIAMTLDGRFVATASS----KGTLIRVFNTMDG  211 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~--~d~~v~~~~~~~~--~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~~i~iwd~~~~  211 (359)
                      .++|+++.+++.+...  ....|++++..+.  . ...+..+...+.... +|+|+.|+..+.    ++. |.+||+.++
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence            8999988755544211  2447888776543  4 566666665555553 489988877765    445 899998875


Q ss_pred             -cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248          212 -SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL  290 (359)
Q Consensus       212 -~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (359)
                       .....+..+ +...+..++++ ++.++++...|+..+||.++.....                                
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~--------------------------------  397 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP--------------------------------  397 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE--------------------------------
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc--------------------------------
Confidence             233333332 44457778887 6678888888998888876632100                                


Q ss_pred             ceEEecccceeEEeec-CCcEEEeeecccCCEEEEEe----cCCeEEEEEeCC
Q 018248          291 PKYFSSKWSMAQFRLP-ENVQYLVGFGRQNNTIVIVG----LDGSYYKCEFDP  338 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~----~dg~i~v~~~~~  338 (359)
                               ...+.++ .+.+..++++|+++.|+...    ..+.|++|++..
T Consensus       398 ---------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          398 ---------AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             ---------EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             ---------eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence                     0001222 35677889999987666332    357888887754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=3.5e-12  Score=109.68  Aligned_cols=235  Identities=10%  Similarity=0.102  Sum_probs=159.4

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      .....|+|+++|+++++.. ++.|++|+.+++........    ..... +++.++++.++++....  ...|.+++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~--~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEG--THTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSST--TCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCC--CceEEEEEcCC
Confidence            4678999999999777777 78999999987554432221    22223 78888888777766321  23899999776


Q ss_pred             ccEEeee----c-cCcceeEEEEec-ceeEEE--ecCeEEEEEcccceeeee----EeccCCCc--eeeeeecCCCccEE
Q 018248           86 NRYLGEL----S-FRSEVKNVRLRR-DRIVVV--LNQKVYVYNFTDLKLVDQ----IETVVNPT--GLCDVSQNAGPMVM  151 (359)
Q Consensus        86 ~~~~~~~----~-~~~~v~~~~~~~-~~~~~~--~d~~i~i~d~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~l  151 (359)
                      +.....+    . ....+.+++++| ++.+++  .++.|+.||..++.....    ........  ..++++|++..+++
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            6544444    3 446678999999 666665  667899999876653222    11111111  27889987666555


Q ss_pred             EecCCCCeeEEEEecCCeeeEEeeccc---------------ccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEE
Q 018248          152 ACPGLLKGQVRVEDYGTKKSKYITAHA---------------SRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQ  215 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~  215 (359)
                      +  ...++.|+.++.++. ...+.++.               .....++++|+|+++++-. .++. |+.|++.+++.. 
T Consensus       284 ~--d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v~-  358 (409)
T 3hrp_A          284 S--DQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYVS-  358 (409)
T ss_dssp             E--ETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEEE-
T ss_pred             E--eCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEEE-
Confidence            4  335678888887765 33333322               3478899999999777766 6777 999998777644 


Q ss_pred             EeecCC-------------CCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          216 EMRRGA-------------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       216 ~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      .+.+..             .-.....++++++|.++++-..++.|+.++++
T Consensus       359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            333210             01358899999999888888888889888763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.61  E-value=1.5e-11  Score=104.25  Aligned_cols=269  Identities=9%  Similarity=-0.032  Sum_probs=171.7

Q ss_pred             EEccCCCEEEEec--C-C---ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecC-------CCCCCeEE
Q 018248           13 ALNQDHGCFATGT--E-T---GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG-------PHQSNKVM   79 (359)
Q Consensus        13 ~~s~~g~~l~~~~--d-~---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-------~~~d~~i~   79 (359)
                      ...|+++++.+..  . +   .|.+||..+++..  ..+.   .+....+.++++++.++++...       . .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~---~g~~p~i~~spDg~~lyv~n~~~~~~~rg~-~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVN---GGFLPNPVAAHSGSEFALASTSFSRIAKGK-RTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE--EEec---CCCCCCeEECCCCCEEEEEeccccccccCC-CCCeEE
Confidence            3457887765544  1 1   7899999887654  3443   2222378899999988877521       1 257899


Q ss_pred             EEECCCccEEeeeccC--------cceeEEEEecceeEEE----e-cCeEEEEEcccceeeee-EeccCCCceeeeeecC
Q 018248           80 IWDDHENRYLGELSFR--------SEVKNVRLRRDRIVVV----L-NQKVYVYNFTDLKLVDQ-IETVVNPTGLCDVSQN  145 (359)
Q Consensus        80 iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~----~-d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~  145 (359)
                      +||..+.+.+..+...        .....+.++|+|++++    . ++.|.++| .+++.+.. +....    ++.+.+.
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~  175 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPG  175 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeC
Confidence            9999998888877532        3456899999998877    2 47899999 99988877 65322    2455677


Q ss_pred             CCccEEEecCCCCeeEEEEecCCeeeEEee-----ccccc-ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc--EEEEe
Q 018248          146 AGPMVMACPGLLKGQVRVEDYGTKKSKYIT-----AHASR-IASIAMTLDGRFVATASSKGTLIRVFNTMDGS--LLQEM  217 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~-----~~~~~-i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~--~~~~~  217 (359)
                      ++..+++..  .||.+.+++.+++......     ....+ .....+.+++..++..+..+. +.+.|+.+..  .+..+
T Consensus       176 ~~~~~~~~~--~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~  252 (373)
T 2mad_H          176 APSTFYLLC--AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPI  252 (373)
T ss_pred             CCceEEEEc--CCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeee
Confidence            766555442  4777776555544442221     11112 123456676665555556778 9999987553  22222


Q ss_pred             ec--------CCCCcceEEEEecCCCCEEEEEcC----------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248          218 RR--------GAERAEIYSLAFSSNAQWLAASSD----------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA  279 (359)
Q Consensus       218 ~~--------~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (359)
                      ..        ...+.....+.++||++.|..+..          ++.|.++|+.+.+..                     
T Consensus       253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv---------------------  311 (373)
T 2mad_H          253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS---------------------  311 (373)
T ss_pred             eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE---------------------
Confidence            21        001223445788999888777543          356888898876521                     


Q ss_pred             eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEe-cCCeEEEEEeCC
Q 018248          280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVG-LDGSYYKCEFDP  338 (359)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~v~~~~~  338 (359)
                                           .++.+. +....++|+|||+ .++++. .++.|.+++...
T Consensus       312 ---------------------~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          312 ---------------------SQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             ---------------------EEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence                                 001111 2357899999999 788777 489999998765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=1.7e-12  Score=107.81  Aligned_cols=237  Identities=8%  Similarity=0.048  Sum_probs=155.0

Q ss_pred             ceEEEEEccCCCEEEE-------ec-CCceEEEEcCCCcceeeeec-ccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            8 TIHHLALNQDHGCFAT-------GT-ETGFRVYLSDPYKPIMRRDF-DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~-------~~-d~~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      ...+++|+++|+++++       +. ++.|.+|+..+++......- ..++...+..+.+.++...+.++.    ..+.|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~----~~~~l   94 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD----MRLGL   94 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE----TTTEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE----CCCCE
Confidence            4578999999988888       55 88999999876554321110 001335566677766623444444    23589


Q ss_pred             EEEECCCccEEee-ec-----cCcceeEEEEecceeEEE-e--c---------------CeEEEEEcccceeeeeEeccC
Q 018248           79 MIWDDHENRYLGE-LS-----FRSEVKNVRLRRDRIVVV-L--N---------------QKVYVYNFTDLKLVDQIETVV  134 (359)
Q Consensus        79 ~iwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~-~--d---------------~~i~i~d~~~~~~~~~~~~~~  134 (359)
                      .+||.. ++.... ..     ....+.++++++++.+++ .  +               +.|..++.. ++...... ..
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC
Confidence            999987 765443 22     123588999999998777 2  2               467777764 44433222 22


Q ss_pred             CCceeeeee----cCCCccEEEecCCCCeeEEEEecC--Ce-----eeEEeeccc-ccccEEEEccCCcEEEEEeCCCCe
Q 018248          135 NPTGLCDVS----QNAGPMVMACPGLLKGQVRVEDYG--TK-----KSKYITAHA-SRIASIAMTLDGRFVATASSKGTL  202 (359)
Q Consensus       135 ~~~~~~~~~----~~~~~~~l~~~g~~d~~v~~~~~~--~~-----~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~~  202 (359)
                      .....++++    ++++.++++  ...++.|.+|+.+  +.     ....+..+. ..+..++++++|+++++...++. 
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~--~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-  248 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-  248 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-
T ss_pred             CCcceEEEecccCCCCCEEEEE--ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-
Confidence            334567888    777654444  3346778886643  32     122233333 56788999999998888777888 


Q ss_pred             EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE-EEEcCCCcEEEEEccCCC
Q 018248          203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL-AASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~  256 (359)
                      |.+||..+++.+..+..  +...+.+++|+|+++.| ++...++.|..|++....
T Consensus       249 i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            99999887776666654  34678999999999955 455566889999987643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=1.1e-11  Score=102.24  Aligned_cols=225  Identities=14%  Similarity=0.122  Sum_probs=150.1

Q ss_pred             eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec
Q 018248           54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      ....|.++.+.++++..   .++.|..||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++.......
T Consensus        16 Egp~w~~~~~~l~~~d~---~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDI---PAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             EEEEEETTTTEEEEEET---TTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEEC
T ss_pred             cCCeEECCCCEEEEEEC---CCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEec
Confidence            45567776677776654   458999999887765 4455677899999999998777 888999999987765433322


Q ss_pred             c----CCCceeeeeecCCCccEEEecCC---------CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEE-eC
Q 018248          133 V----VNPTGLCDVSQNAGPMVMACPGL---------LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA-SS  198 (359)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~l~~~g~---------~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~  198 (359)
                      .    ......+++.+++. +++...+.         ..+.|+..+.++... .+..+....+.++|+|+++.|+.+ +.
T Consensus        92 ~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             CCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCC
Confidence            1    12245577788775 34433211         123454454444333 333344556899999999876554 55


Q ss_pred             CCCeEEEEEc--CCCcEE--EEee-cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCcc
Q 018248          199 KGTLIRVFNT--MDGSLL--QEMR-RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLS  273 (359)
Q Consensus       199 dg~~i~iwd~--~~~~~~--~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  273 (359)
                      ++. |.+|++  .++...  ..+. .......+..++++++|++.++....+.|.+||.++++..               
T Consensus       170 ~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~---------------  233 (297)
T 3g4e_A          170 SYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL---------------  233 (297)
T ss_dssp             GTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE---------------
T ss_pred             CCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE---------------
Confidence            677 999997  455432  1121 1112356789999999998888777888999999876511               


Q ss_pred             CCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec-ccCCEEEEEec
Q 018248          274 SKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG-RQNNTIVIVGL  327 (359)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  327 (359)
                                                 ..+..|...+++++|. ||++.|++++.
T Consensus       234 ---------------------------~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          234 ---------------------------QTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ---------------------------EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ---------------------------EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence                                       1134555678999998 89988887776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=5.9e-12  Score=106.76  Aligned_cols=233  Identities=10%  Similarity=0.045  Sum_probs=154.6

Q ss_pred             EEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecc-cC---CCCceeEEEEeccCCEEEEEecCCCCC
Q 018248           11 HLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFD-RN---PRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      .+++||||++++++.           ++.|.+||..+.+......+. ..   +......+.++++++.++++...  .+
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~--~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA--AG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC--CC
Confidence            899999999998874           467999999876655433331 00   01223467899999988877632  24


Q ss_pred             CeEEEEECCCccEEee-eccCcceeEEEEeccee--EEE--ecCeEEEEEcccceeeeeEe-----ccCCCc-eeeeeec
Q 018248           76 NKVMIWDDHENRYLGE-LSFRSEVKNVRLRRDRI--VVV--LNQKVYVYNFTDLKLVDQIE-----TVVNPT-GLCDVSQ  144 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~-----~~~~~~-~~~~~~~  144 (359)
                      +.|.++| .+++.+.. +.....   +.+.|++.  ++.  .||.+.++|. +++......     ....++ ....+.+
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence            7899999 99999888 764443   34445542  233  8899999999 777664332     111111 1234455


Q ss_pred             CCCccEEEecCCCCeeEEEEecCCee---eEEeec----------ccccccEEEEccCCcEEEEEeC----------CCC
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGTKK---SKYITA----------HASRIASIAMTLDGRFVATASS----------KGT  201 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~~~---~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~----------dg~  201 (359)
                      ++...++.+   ..+.+.+.+.....   +..+..          .......++++|+++.++++..          .+.
T Consensus       223 ~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~  299 (373)
T 2mad_H          223 KSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             cCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence            555544433   35677775543321   122211          1122344789999998877653          346


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEEc-CCCcEEEEEccCCCC
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAASS-DKGTVHVFGLKVDSG  257 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~  257 (359)
                       |.++|+.+++.+..+..+   ....+++|+|||+ .++++. .++.|.++|+.+.+.
T Consensus       300 -V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          300 -VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             -EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence             999999999999998753   3689999999999 777776 589999999998873

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=7.2e-11  Score=97.17  Aligned_cols=231  Identities=8%  Similarity=0.005  Sum_probs=153.1

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ...+.+++++++|+++++.. ++.|.+|+.+ ++.. ...+. .+...+..+.+.++++..+ +..   .++.|..+|..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v-~~~---~~~~v~~~d~~   91 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVP-TPDAKVMCLIVSSLGDIWF-TEN---GANKIGKLSKK   91 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS-STTCCEEEEEECTTSCEEE-EET---TTTEEEEECTT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECC-CCCCcceeEEECCCCCEEE-Eec---CCCeEEEECCC
Confidence            45789999999999888876 8899999987 4332 22232 2235566677766555333 332   35889999977


Q ss_pred             CccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee-EeccCCCceeeeeecCCCccEEEecCCC
Q 018248           85 ENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ-IETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        85 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                       ++.. .+.   ....+.++++.+++.+.+   .++.|..+|.. ++.... +.........+++.+++. ++++.  ..
T Consensus        92 -g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--~~  165 (300)
T 2qc5_A           92 -GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTE--NQ  165 (300)
T ss_dssp             -SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEE--TT
T ss_pred             -CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEe--cC
Confidence             5543 232   336788999999887766   36789999986 544322 222233455677777665 44433  23


Q ss_pred             CeeEEEEecCCeeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      ++.|..++.++..... ...+...+..++++++|++.++....+. |.+||. +++...... ......+.+++++++|+
T Consensus       166 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~-~~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          166 NNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISEYDI-PTPNARPHAITAGKNSE  242 (300)
T ss_dssp             TTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEEEEC-SSTTCCEEEEEECSTTC
T ss_pred             CCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEEEEC-CCCCCCceEEEECCCCC
Confidence            5677777765544332 1233456789999999987777666777 999997 555443221 11345789999999999


Q ss_pred             EEEEEcCCCcEEEEEc
Q 018248          237 WLAASSDKGTVHVFGL  252 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~  252 (359)
                      +.++...++.|..|+.
T Consensus       243 l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          243 IWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEEETTTTEEEEECT
T ss_pred             EEEeccCCCeEEEECC
Confidence            7777767788999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=2.3e-12  Score=104.59  Aligned_cols=235  Identities=10%  Similarity=-0.002  Sum_probs=150.6

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeee
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~  128 (359)
                      ....+++.++++ +.+++..  .++.|.+|+..++....... ....+.++++++++.+++  .++.|.+||...... .
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEG--MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-T  100 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECS--SSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-E
T ss_pred             CccceEECCCCC-EEEEccC--CCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-e
Confidence            455666766665 3331322  46899999976554332212 335688999999988666  468999999865433 2


Q ss_pred             eEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248          129 QIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVF  206 (359)
Q Consensus       129 ~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw  206 (359)
                      .+. ........+++.+++. ++++.  ..++.|.+++........ .......+..++++|+|+++++...++. |.+|
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~  176 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGA-VYVAD--RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKL  176 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCC-EEEEE--GGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEE
T ss_pred             eeecCCcCCCcceEECCCCC-EEEEE--CCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEE
Confidence            222 2223456678887764 34432  246678777544332222 2223346789999999997777767778 9999


Q ss_pred             EcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEe
Q 018248          207 NTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFI  286 (359)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (359)
                      |............  +...+.+++++++|.++++...++.|.+|+.......                            
T Consensus       177 ~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~----------------------------  226 (270)
T 1rwi_B          177 EAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST----------------------------  226 (270)
T ss_dssp             CTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE----------------------------
T ss_pred             ecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce----------------------------
Confidence            9876665433222  2257899999999988888777889999998654311                            


Q ss_pred             eeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          287 RGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                            ....        .....+..++++++|+.+++...++.|++|+++.
T Consensus       227 ------~~~~--------~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          227 ------VLPF--------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             ------ECCC--------CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             ------eecc--------CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence                  0000        0113467899999998778778899999998765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.56  E-value=8.2e-13  Score=121.73  Aligned_cols=241  Identities=8%  Similarity=0.058  Sum_probs=158.0

Q ss_pred             CCCceEEEEEccCCCEEEEec--C----CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCC------
Q 018248            5 DPITIHHLALNQDHGCFATGT--E----TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGP------   72 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~--d----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~------   72 (359)
                      +...+..++|||||++||.+.  .    ..|++||+++++.... .+.   ......++|+ +++.+++++...      
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK---DVKFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE---EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC---CceeccEEEe-CCCEEEEEEecCcccccc
Confidence            456788999999999998644  2    4599999998765432 221   1113567899 999988887431      


Q ss_pred             ---CCCCeEEEEECCCccE--Eeeecc----CcceeEEEEecceeEEE-------ecCeEEEEEcccce-eeeeEeccCC
Q 018248           73 ---HQSNKVMIWDDHENRY--LGELSF----RSEVKNVRLRRDRIVVV-------LNQKVYVYNFTDLK-LVDQIETVVN  135 (359)
Q Consensus        73 ---~~d~~i~iwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~~~-------~d~~i~i~d~~~~~-~~~~~~~~~~  135 (359)
                         .....|++|++.+++.  ...+..    ......+.++|++++++       ..+.|+++|+.++. ....+..+..
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~  281 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD  281 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence               0235699999887642  223332    23467899999999876       22589999997653 3445554444


Q ss_pred             CceeeeeecCCCccEEEecC-CCCeeEEEEecCCee---eEEeecccccccEEEEccCCcEEEEEeCCC---CeEEEEEc
Q 018248          136 PTGLCDVSQNAGPMVMACPG-LLKGQVRVEDYGTKK---SKYITAHASRIASIAMTLDGRFVATASSKG---TLIRVFNT  208 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g-~~d~~v~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~~i~iwd~  208 (359)
                      .... .++++++.+++.+.. ...+.|..++.....   .+.+..|...+.  .|+++++.|+....++   . |++||+
T Consensus       282 ~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~~d~  357 (693)
T 3iuj_A          282 ADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQFDY  357 (693)
T ss_dssp             SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEEECT
T ss_pred             ceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEEEEC
Confidence            3333 367777776555421 113567777766533   255666666654  8999999887766544   5 889988


Q ss_pred             CCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC----CcEEEEEccCCC
Q 018248          209 MDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK----GTVHVFGLKVDS  256 (359)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~  256 (359)
                      ..+ ....+... ..+.+..+.++++++.|+....+    ++++.||+.+++
T Consensus       358 ~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          358 EGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            644 44555432 34567888888888876655444    789999987765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=1.6e-11  Score=101.89  Aligned_cols=235  Identities=11%  Similarity=0.121  Sum_probs=149.9

Q ss_pred             ceeEEEEeccCCEEEEE-----ecCCCCCCeEEEEECCCccEEeeec-----cCcceeEEEEecc-eeEEE--ecCeEEE
Q 018248           52 GTQLVSMLFRSNIICLV-----NSGPHQSNKVMIWDDHENRYLGELS-----FRSEVKNVRLRRD-RIVVV--LNQKVYV  118 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~-----~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~~--~d~~i~i  118 (359)
                      ....+++.+++...+..     .+.  .++.|.+||..+++......     +...+.+++++++ +.+++  ..+.|.+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGK--PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTE--ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCC--CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            34566777655443330     011  46899999988877543322     3366889999999 87555  4558999


Q ss_pred             EEcccceeeee-Eecc----CCCceeeeeecCCCccEEEecCCCC---------------eeEEEEecCCeeeEEeeccc
Q 018248          119 YNFTDLKLVDQ-IETV----VNPTGLCDVSQNAGPMVMACPGLLK---------------GQVRVEDYGTKKSKYITAHA  178 (359)
Q Consensus       119 ~d~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~l~~~g~~d---------------~~v~~~~~~~~~~~~~~~~~  178 (359)
                      ||.. ++.... ....    ...+..+++.+++. ++++. . .+               +.|..++.+++ ...+..+.
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~  171 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITA-P-AGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAF  171 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEE-C-BCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEEE
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEe-c-CcccccccccccccCCCCeEEEECCCCC-EEEeccCC
Confidence            9987 654332 2211    12355677777764 34333 2 22               55666665543 33333344


Q ss_pred             ccccEEEEc----cCCcEEEEE-eCCCCeEEEEEcC-CCcE-----EEEeecCCCC-cceEEEEecCCCCEEEEEcCCCc
Q 018248          179 SRIASIAMT----LDGRFVATA-SSKGTLIRVFNTM-DGSL-----LQEMRRGAER-AEIYSLAFSSNAQWLAASSDKGT  246 (359)
Q Consensus       179 ~~i~~~~~s----~~~~~l~~~-~~dg~~i~iwd~~-~~~~-----~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~  246 (359)
                      .....++++    |+++.|+.+ ..++. |.+||.. +++.     ...+..  +. ..+..++++++|+++++...++.
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPG--THEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCC--CSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCC--CCCCCCCceEECCCCCEEEEEcCCCE
Confidence            556889999    999766555 45677 9999986 4542     222222  22 46789999999998888777888


Q ss_pred             EEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEe
Q 018248          247 VHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVG  326 (359)
Q Consensus       247 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  326 (359)
                      |.+||.++++..                                          ..+..+...+..++|+|+++.|++++
T Consensus       249 i~~~d~~~g~~~------------------------------------------~~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          249 IEVFGPDGGQPK------------------------------------------MRIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEECTTCBSCS------------------------------------------EEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCcEe------------------------------------------EEEeCCCCCceeEEECCCCCEEEEEe
Confidence            999998755411                                          01223345678899999999666655


Q ss_pred             -cCCeEEEEEeCC
Q 018248          327 -LDGSYYKCEFDP  338 (359)
Q Consensus       327 -~dg~i~v~~~~~  338 (359)
                       .++.|.+|+++.
T Consensus       287 ~~~~~l~~~~~~~  299 (314)
T 1pjx_A          287 HENNAVWKFEWQR  299 (314)
T ss_dssp             TTTTEEEEEECSS
T ss_pred             CCCCeEEEEeCCC
Confidence             468888887764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.55  E-value=1.4e-11  Score=101.54  Aligned_cols=219  Identities=10%  Similarity=0.029  Sum_probs=145.4

Q ss_pred             ceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            8 TIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         8 ~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      --.+..|+|++..| .+.. ++.|..|+.++++.. ...    ....+..+++.++++. +++.     ++.|.+||..+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~----~~~~~~~i~~~~dG~l-~v~~-----~~~l~~~d~~~   82 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT----MDAPVSSVALRQSGGY-VATI-----GTKFCALNWKE   82 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE----CSSCEEEEEEBTTSSE-EEEE-----TTEEEEEETTT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe----CCCceEEEEECCCCCE-EEEE-----CCeEEEEECCC
Confidence            44578899965554 5555 889999999875442 222    2567888888888873 3333     37899999888


Q ss_pred             ccEEeeecc-----CcceeEEEEecceeEEE-e-----------cCeEEEEEcc-cceeeeeEeccCCCceeeeeecCCC
Q 018248           86 NRYLGELSF-----RSEVKNVRLRRDRIVVV-L-----------NQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        86 ~~~~~~~~~-----~~~v~~~~~~~~~~~~~-~-----------d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                      ++.......     ...+.+++++|+|.+++ .           ...-.+|.+. .++... +.........++|+|+++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSC
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCC
Confidence            765433221     24578899999998777 1           1234455543 233322 222223346789999988


Q ss_pred             ccEEEecCCCCeeEEEEecC---Cee-----eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          148 PMVMACPGLLKGQVRVEDYG---TKK-----SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~---~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      .++++-  +.++.|.+++.+   +..     ...+..+......++++++|++.++....+. |..||..+++.+..+..
T Consensus       162 ~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          162 IFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             EEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEEC
T ss_pred             EEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEEC
Confidence            755543  346778886642   221     1222334456789999999987777777788 99999988999888875


Q ss_pred             CCCCcceEEEEec-CCCCEEEEEcC
Q 018248          220 GAERAEIYSLAFS-SNAQWLAASSD  243 (359)
Q Consensus       220 ~~~~~~i~~~~~s-~~~~~l~~~~~  243 (359)
                        +...+++++|. |+++.|..++.
T Consensus       239 --p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          239 --PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             --SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             --CCCCceEEEEeCCCCCEEEEEcC
Confidence              34579999998 88887655543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.54  E-value=9.9e-11  Score=97.71  Aligned_cols=223  Identities=10%  Similarity=0.043  Sum_probs=144.7

Q ss_pred             eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec
Q 018248           54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      ....|.++.+.++++..   .++.|..||..+++. ..+.....+.++.+++++.+++ .+..|.+||..+++.......
T Consensus        52 egp~~~~~~~~l~~~d~---~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNI---LERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEETTTTEEEEEEG---GGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECS
T ss_pred             cCCeEeCCCCEEEEEEC---CCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeC
Confidence            34567777666666654   358999999887654 3445567899999999998877 666799999877765332221


Q ss_pred             c----CCCceeeeeecCCCccEEEecCC----CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe-CCCCeE
Q 018248          133 V----VNPTGLCDVSQNAGPMVMACPGL----LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS-SKGTLI  203 (359)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~l~~~g~----~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i  203 (359)
                      .    ...+..+++++++. +++...+.    ..+.|..++ +++ ...+..+......++|+|+++.|+.+. .++. |
T Consensus       128 ~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~-I  203 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA-KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNR-L  203 (326)
T ss_dssp             STTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE-TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCE-E
T ss_pred             CCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe-CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCE-E
Confidence            1    12345677888775 33332111    124555555 443 333333444567899999998776554 4677 9


Q ss_pred             EEEEcC--CC-c-----EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCC
Q 018248          204 RVFNTM--DG-S-----LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSK  275 (359)
Q Consensus       204 ~iwd~~--~~-~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  275 (359)
                      .+||+.  ++ +     ....+..  ....+..++++++|++.++...++.|.+|+.. ++.                  
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~------------------  262 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH------------------  262 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE------------------
T ss_pred             EEEEcccccCCcccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCE------------------
Confidence            999985  55 3     1222221  23467889999999988777667789999873 330                  


Q ss_pred             CCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec-ccCCEEEEEecCC
Q 018248          276 NSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG-RQNNTIVIVGLDG  329 (359)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg  329 (359)
                                              ...+..+...+.+++|+ ++++.|++++..+
T Consensus       263 ------------------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          263 ------------------------IARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ------------------------EEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             ------------------------EEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence                                    01133455568899998 8988887776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=6.5e-12  Score=105.29  Aligned_cols=270  Identities=13%  Similarity=0.082  Sum_probs=169.2

Q ss_pred             EEEccCCCEEEEec------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEec-------CCCCCCeE
Q 018248           12 LALNQDHGCFATGT------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS-------GPHQSNKV   78 (359)
Q Consensus        12 ~~~s~~g~~l~~~~------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------~~~~d~~i   78 (359)
                      ....|+++.+.+..      ++.|.++|..+++.......  |. .+ . +.++++++.++++..       +. .++.|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~-~P-~-va~spDG~~lyVan~~~~r~~~G~-~~~~V  111 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GF-LP-N-PVVADDGSFIAHASTVFSRIARGE-RTDYV  111 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CS-SC-E-EEECTTSSCEEEEEEEEEETTEEE-EEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CC-CC-c-EEECCCCCEEEEEcccccccccCC-CCCEE
Confidence            45579999887775      35799999998776644443  22 22 3 899999998877652       00 24789


Q ss_pred             EEEECCCccEEeeeccC--------cceeEEEEecceeEEE---e--cCeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248           79 MIWDDHENRYLGELSFR--------SEVKNVRLRRDRIVVV---L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN  145 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~---~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
                      .+||..+++.+.++...        .....+.++|||++++   .  ++.|.++|+.+++.+.++....    +..+.|.
T Consensus       112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~  187 (386)
T 3sjl_D          112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPT  187 (386)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEE
T ss_pred             EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecC
Confidence            99999999999888632        2567899999998766   2  5799999999999998886532    1222343


Q ss_pred             CCccEEEecCCCCeeEEEEecC--CeeeEEeecc----cccc-cEEEEc-cCCcEEEEEeCCCCeEEEEEcCCCc--EEE
Q 018248          146 AGPMVMACPGLLKGQVRVEDYG--TKKSKYITAH----ASRI-ASIAMT-LDGRFVATASSKGTLIRVFNTMDGS--LLQ  215 (359)
Q Consensus       146 ~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~----~~~i-~~~~~s-~~~~~l~~~~~dg~~i~iwd~~~~~--~~~  215 (359)
                      +...+++.+  .||.+.+.+..  ++.......+    ..++ ....|. ++|++++ .+.+|. |++.|+.+..  .+.
T Consensus       188 g~~~~~~~~--~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~v~~  263 (386)
T 3sjl_D          188 APDTFFMHC--RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAKFLP  263 (386)
T ss_dssp             ETTEEEEEE--TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCEECC
T ss_pred             CCceeEEEC--CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcceeec
Confidence            333333321  35555443332  2221111111    1222 124554 6886555 556788 9999987654  222


Q ss_pred             Eee--------cCCCCcceEEEEecCCCCEEEEEcC----------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCC
Q 018248          216 EMR--------RGAERAEIYSLAFSSNAQWLAASSD----------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNS  277 (359)
Q Consensus       216 ~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (359)
                      .+.        .+..+.....++++++++.|+....          .+.|.+.|+++.+..                   
T Consensus       264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~-------------------  324 (386)
T 3sjl_D          264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-------------------  324 (386)
T ss_dssp             CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-------------------
T ss_pred             ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE-------------------
Confidence            221        1111233445778999988877643          246888888887621                   


Q ss_pred             CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEec-CCeEEEEEeCC
Q 018248          278 SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVGL-DGSYYKCEFDP  338 (359)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-dg~i~v~~~~~  338 (359)
                                    +.         +.+. ..+..++|++|++ .|+++.. +|.|.+++...
T Consensus       325 --------------~~---------i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          325 --------------AK---------FEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             --------------EE---------EEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             --------------EE---------EECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence                          01         1111 2456899999996 7777654 89999997764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.52  E-value=7.5e-12  Score=106.81  Aligned_cols=267  Identities=8%  Similarity=-0.028  Sum_probs=173.7

Q ss_pred             cCCCEEEEec--C----CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecC-------CCCCCeEEEEE
Q 018248           16 QDHGCFATGT--E----TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG-------PHQSNKVMIWD   82 (359)
Q Consensus        16 ~~g~~l~~~~--d----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-------~~~d~~i~iwd   82 (359)
                      ++++.+.+..  +    +.|.++|..+.+.......  | ..+  .+.++++++.++++...       . .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G-~~P--gia~SpDgk~lyVan~~~~~~~~G~-~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--G-FLP--HPVAAEDGSFFAQASTVFERIARGK-RTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--C-SSC--EEEECTTSSCEEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--C-CCC--ceEECCCCCEEEEEeccccccccCC-CCCEEEEEE
Confidence            5777665554  3    6899999998877655554  2 223  78899999988776521       0 247899999


Q ss_pred             CCCccEEeeeccC--------cceeEEEEecceeEEE----e-cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248           83 DHENRYLGELSFR--------SEVKNVRLRRDRIVVV----L-NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        83 ~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~----~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      ..+++.+..+...        .....+.++||+++++    . ++.|.+.|+.+++.+..+....    +..+.|++...
T Consensus       156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~  231 (426)
T 3c75_H          156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTV  231 (426)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTE
T ss_pred             CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcE
Confidence            9999998887632        3467899999998776    2 5789999999999988887532    13445555554


Q ss_pred             EEEecCCCCeeEEE-EecCCeeeEE----eeccccc-ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE--Eeec--
Q 018248          150 VMACPGLLKGQVRV-EDYGTKKSKY----ITAHASR-IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ--EMRR--  219 (359)
Q Consensus       150 ~l~~~g~~d~~v~~-~~~~~~~~~~----~~~~~~~-i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~--~~~~--  219 (359)
                      +++.+  .||.+.+ ....++....    +.....+ ...+.+.+++..++..+..+. |.+.|........  .+..  
T Consensus       232 ~v~~~--~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~~~~~  308 (426)
T 3c75_H          232 FYMNC--RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEGATFRAPIEALT  308 (426)
T ss_dssp             EEEEE--TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSCEEECCCEESSC
T ss_pred             EEEEc--CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCceEEeeeeeecc
Confidence            45443  3555444 3323332211    1111112 124567899888877788888 9999986654221  1110  


Q ss_pred             ------CCCCcceEEEEecCCCCEEEEEcC----------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeee
Q 018248          220 ------GAERAEIYSLAFSSNAQWLAASSD----------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSF  283 (359)
Q Consensus       220 ------~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (359)
                            +........++++|+++.+++...          ++.|.+.|+.+.+..                         
T Consensus       309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-------------------------  363 (426)
T 3c75_H          309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-------------------------  363 (426)
T ss_dssp             TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-------------------------
T ss_pred             ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE-------------------------
Confidence                  000112223789999887776542          347999999887621                         


Q ss_pred             eEeeeecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEec-CCeEEEEEeCC
Q 018248          284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVGL-DGSYYKCEFDP  338 (359)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-dg~i~v~~~~~  338 (359)
                         +              ++.++ .....++|+||++ .++++.. ++.|.|++...
T Consensus       364 ---~--------------~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          364 ---N--------------KIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             ---E--------------EEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             ---E--------------EEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence               0              01111 1346899999999 8888884 99999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.51  E-value=1.7e-11  Score=102.77  Aligned_cols=233  Identities=12%  Similarity=0.086  Sum_probs=152.8

Q ss_pred             EEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccCC----CCceeEEEEeccCCEEEEEecCCCCC
Q 018248           11 HLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRNP----RGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      .++++|||++++++.           ++.|.+||..+.+......+..+.    ......+.++++++.+++....  .+
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~--~~  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--PA  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS--SS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC--CC
Confidence            399999999886654           467999999987766544442000    1245568899999988776532  25


Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEecce--eEEE--ecCeEEEEEccc-ceeeeeEecc----CCCce-eeeee-c
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTD-LKLVDQIETV----VNPTG-LCDVS-Q  144 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~-~~~~~~~~~~----~~~~~-~~~~~-~  144 (359)
                      +.|.++|+.+++.+.++...+.   ....|.+  .+++  .||++.+.++.+ ++........    ..++. ...|. +
T Consensus       160 ~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~  236 (386)
T 3sjl_D          160 PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK  236 (386)
T ss_dssp             CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence            8999999999999999874432   2223433  2222  788888888865 4442211111    11111 12343 3


Q ss_pred             CCCccEEEecCCCCeeEEEEecCCeeeEEeec-------------ccccccEEEEccCCcEEEEEeC----------CCC
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGTKKSKYITA-------------HASRIASIAMTLDGRFVATASS----------KGT  201 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~----------dg~  201 (359)
                      ++. .++++   .+|.+++.+..+........             .......++++|+++.++....          ...
T Consensus       237 dG~-~~~vs---~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~  312 (386)
T 3sjl_D          237 AGR-LVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF  312 (386)
T ss_dssp             TTE-EEEEB---TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred             CCc-EEEEe---CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence            442 23333   36889987765543222111             1234556888999998877643          245


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEE-cCCCcEEEEEccCCC
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAAS-SDKGTVHVFGLKVDS  256 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~iw~~~~~~  256 (359)
                       |.++|+.+++.+..+..+   ..+.++++++|++ +|++. ..++.|.++|..+++
T Consensus       313 -V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          313 -VVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             -EEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             -EEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence             999999999999999863   4788999999997 66654 558999999999877

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=1.5e-10  Score=99.50  Aligned_cols=244  Identities=10%  Similarity=0.035  Sum_probs=147.0

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecC--eEEEEEccccee
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQ--KVYVYNFTDLKL  126 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~--~i~i~d~~~~~~  126 (359)
                      ....+++.++++ ++++..   .++.|++||..+++............ ++|++++..++   .++  .|.+++...+..
T Consensus       132 ~P~~la~d~~g~-lyv~d~---~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVGNNT-VLAYQR---DDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECSTTE-EEEEET---TTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeCCCC-EEEEec---CCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            345666665555 333332   35899999988777665554333344 99999987655   323  899999865544


Q ss_pred             eeeE----eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEe----e-cccccc--cEEEEccC-CcEEE
Q 018248          127 VDQI----ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYI----T-AHASRI--ASIAMTLD-GRFVA  194 (359)
Q Consensus       127 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~----~-~~~~~i--~~~~~s~~-~~~l~  194 (359)
                      ...+    .........++++|+...+++ + . .++.|+.++........+    . ++...-  ..++|+|+ +.+++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~-d-~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYF-V-D-SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEE-E-C-TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEE-E-E-CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            3333    113344567888886555444 2 2 477888888766544443    1 122222  39999995 55555


Q ss_pred             EEeCCCCeEEEEEcCCCcEEEEeecCC-------------CCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCCCCCCC
Q 018248          195 TASSKGTLIRVFNTMDGSLLQEMRRGA-------------ERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDSGSPG  260 (359)
Q Consensus       195 ~~~~dg~~i~iwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~  260 (359)
                      +-..++. |+.|+.. ++ +..+.+..             .-.....++++|+|+++++-. .++.|+.|++.++...  
T Consensus       284 ~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~--  358 (409)
T 3hrp_A          284 SDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS--  358 (409)
T ss_dssp             EETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE--
T ss_pred             EeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE--
Confidence            5556677 9999864 33 22332210             013578999999999888877 8889999997665411  


Q ss_pred             CCccccCCCCCccCCCCCceeeeeEeeee--cceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          261 TSKLHSASEPNLSSKNSSAISSFRFIRGV--LPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                                              .+.+.  ...+.+.....+    .-.....+++++++..+++-..++.|+.+.+
T Consensus       359 ------------------------~~~g~~~~~g~~~g~~~~~----~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          359 ------------------------TVAGQVDVASQIDGTPLEA----TFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ------------------------EEEECTTCBSCCCBSTTTC----CBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ------------------------EEeCCCCCCCcCCCChhce----EeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                                    00000  000000000000    0134578999999777777777888888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=1.8e-11  Score=104.48  Aligned_cols=234  Identities=14%  Similarity=0.136  Sum_probs=156.5

Q ss_pred             EEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecc-cC---CCCceeEEEEeccCCEEEEEecCCCCC
Q 018248           11 HLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFD-RN---PRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      .++++|||++++++.           ++.|.++|..+.+......+. ..   .......+.++++++.+++....  .+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~--~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS--PA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS--SS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC--CC
Confidence            799999999887764           467999999987765444431 00   01234567889999988877632  24


Q ss_pred             CeEEEEECCCccEEeeeccCcceeEEEEecce--eEEE--ecCeEEEEEcccceeeee----EeccCCCc-eeeeeecCC
Q 018248           76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTDLKLVDQ----IETVVNPT-GLCDVSQNA  146 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~~~~~~~----~~~~~~~~-~~~~~~~~~  146 (359)
                      +.|.+.|+.+++.+.++.....   ....|++  .++.  .||.+.+.+..+++....    +.....++ ....+.+++
T Consensus       200 ~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          200 PAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             CeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence            8999999999999988874432   2334443  2222  677888788755554422    22222221 124567887


Q ss_pred             CccEEEecCCCCeeEEEEecCCeeeEEeec-------------ccccccEEEEccCCcEEEEEeC----------CCCeE
Q 018248          147 GPMVMACPGLLKGQVRVEDYGTKKSKYITA-------------HASRIASIAMTLDGRFVATASS----------KGTLI  203 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~----------dg~~i  203 (359)
                      ...++..   ..+.+.+.+...........             .......++++|+++.+++...          .+. |
T Consensus       277 ~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-V  352 (426)
T 3c75_H          277 GRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-V  352 (426)
T ss_dssp             CEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-E
T ss_pred             CEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-E
Confidence            7655543   35778885554332222110             1122334789999987776642          346 9


Q ss_pred             EEEEcCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEEc-CCCcEEEEEccCCC
Q 018248          204 RVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAASS-DKGTVHVFGLKVDS  256 (359)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~  256 (359)
                      .++|+.+.+.+.++..+   .....++|+|||+ +++++. .++.|.|+|+.+.+
T Consensus       353 sVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          353 VVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            99999999999999753   3588999999999 888877 58999999999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.48  E-value=4.7e-10  Score=92.22  Aligned_cols=234  Identities=12%  Similarity=0.048  Sum_probs=149.9

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ...+.+++++++|.++++.. ++.|..|+.+ ++ .....+. .+...+..+.+.+++...+...    .++.|..||. 
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~d~-  127 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLP-NPDSAPYGITEGPNGDIWFTEM----NGNRIGRITD-  127 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECS-STTCCEEEEEECTTSCEEEEET----TTTEEEEECT-
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCC-CcCCCceeeEECCCCCEEEEec----CCceEEEECC-
Confidence            46789999999999888877 7889999876 22 2222221 2344566677766554333322    3589999997 


Q ss_pred             CccEEeee-c-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee-EeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           85 ENRYLGEL-S-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ-IETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        85 ~~~~~~~~-~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +++..... . ....+..+++.+++.+.+   .++.|..||. +++.... +.........+++.+++. ++++.  ..+
T Consensus       128 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~  203 (299)
T 2z2n_A          128 DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVE--IIG  203 (299)
T ss_dssp             TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEE--TTT
T ss_pred             CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEc--cCC
Confidence            55544322 2 345688999999987766   3579999998 6654432 222233345667777654 34433  235


Q ss_pred             eeEEEEecCCeeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          159 GQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      +.|.+++.++..... ...+...+.+++++++|++.++...++. |..||. +++ +..+....+...+.++++ ++|++
T Consensus       204 ~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l  279 (299)
T 2z2n_A          204 NKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETI  279 (299)
T ss_dssp             TEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCE
T ss_pred             ceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCE
Confidence            678877775443221 2234467889999999997666656777 999998 554 334432223457899999 89988


Q ss_pred             EEEEcCCCcEEEEEccCCC
Q 018248          238 LAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~  256 (359)
                      +++.. .+.+..++.++.+
T Consensus       280 ~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          280 WFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEEET-TTEEEEEEEC---
T ss_pred             EEEec-CCcEEEEEcCccc
Confidence            77665 5668888877643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.44  E-value=4.7e-10  Score=93.59  Aligned_cols=215  Identities=9%  Similarity=0.047  Sum_probs=140.5

Q ss_pred             eEEEEEccCCCE-EEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248            9 IHHLALNQDHGC-FATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus         9 v~~~~~s~~g~~-l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      ..+.+|+|++.. +.+.. ++.|..|+.++++... ...    ...+..+.+.++++.++ +.     +..|.+||..++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~----~~~v~~i~~~~dg~l~v-~~-----~~gl~~~d~~~g  119 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL----PFMGSALAKISDSKQLI-AS-----DDGLFLRDTATG  119 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC----SSCEEEEEEEETTEEEE-EE-----TTEEEEEETTTC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC----CCcceEEEEeCCCeEEE-EE-----CCCEEEEECCCC
Confidence            467899998554 45555 7889999988654321 222    45677788877766444 33     245999998888


Q ss_pred             cEEeeecc-----CcceeEEEEecceeEEE-e-c-------CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           87 RYLGELSF-----RSEVKNVRLRRDRIVVV-L-N-------QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        87 ~~~~~~~~-----~~~v~~~~~~~~~~~~~-~-d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      +.......     ...+.++.++|+|.+++ . +       +.|..++  +++... +.........++|+++++.++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEE
Confidence            75433221     23588999999998776 2 1       4566666  454332 22222334578899998765554


Q ss_pred             ecCCCCeeEEEEecC---C-e-----eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          153 CPGLLKGQVRVEDYG---T-K-----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~---~-~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                      .  ..++.|.+++.+   + .     ....+......+..++++++|.+.++...++. |.+||. +++.+..+..  ..
T Consensus       197 ~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~--~~  270 (326)
T 2ghs_A          197 D--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEV--PG  270 (326)
T ss_dssp             E--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEEC--SC
T ss_pred             E--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEEC--CC
Confidence            3  346788887753   3 2     11122223455678999999987777666677 999997 6777777765  34


Q ss_pred             cceEEEEec-CCCCEEEEEcC
Q 018248          224 AEIYSLAFS-SNAQWLAASSD  243 (359)
Q Consensus       224 ~~i~~~~~s-~~~~~l~~~~~  243 (359)
                      ..+++++|+ ++++.|+.++.
T Consensus       271 ~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          271 KQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SBEEEEEEESTTSCEEEEEEB
T ss_pred             CCcEEEEEecCCCCEEEEEec
Confidence            579999998 88877655443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=6.7e-11  Score=99.51  Aligned_cols=226  Identities=10%  Similarity=0.084  Sum_probs=137.1

Q ss_pred             CceEEEEEccCCCEEEEec---CCceEEEEcCCCcceeeeecc------cCCCCceeEEEEeccCCEEEEEecCC--CCC
Q 018248            7 ITIHHLALNQDHGCFATGT---ETGFRVYLSDPYKPIMRRDFD------RNPRGGTQLVSMLFRSNIICLVNSGP--HQS   75 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~--~~d   75 (359)
                      ..+..++++|+|+++++..   ++.++||.+++++.   ..+.      .+|...+..+++.++++ +.++..+.  ..+
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~---~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL---IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE---EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe---ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCC
Confidence            4678999999999998863   34366776653322   2221      12345667777776654 33333210  014


Q ss_pred             CeEEEEECCCccEEeeeccC-------cceeEEEEecc-eeEEE--e----cCeEEEEEcccceeeeeEeccCCCce-ee
Q 018248           76 NKVMIWDDHENRYLGELSFR-------SEVKNVRLRRD-RIVVV--L----NQKVYVYNFTDLKLVDQIETVVNPTG-LC  140 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~~  140 (359)
                      ..|.+||+.+++.+..+...       ..+..++++++ +..++  .    ++.|.+||+.+++....+..+..... ..
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            78999999999877766522       34689999975 44434  2    56899999988876655543221110 12


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC---CCc-----
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM---DGS-----  212 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~---~~~-----  212 (359)
                      .+.+++..  +.+ ...++.+..|.             ..+..++|+|+|+.|+.+...+..+..++..   .+.     
T Consensus       173 ~~~~~g~~--~~~-~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          173 DLVIDGVP--VQI-GQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             CCEETTEE--CBE-ECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             ceeECCEE--EEe-ccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence            33344332  221 22344443321             2457899999999998888777425555532   111     


Q ss_pred             ---EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          213 ---LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       213 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                         .+..+ +  +.+....++++++|+++++...++.|.+||.+++
T Consensus       237 ~~~~~~~~-g--~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          237 LGSKIERY-S--EKPICDGISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             HHTTCEEE-E--ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             hhcceEec-c--cCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence               01111 1  2234567999999999999989999999998443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.42  E-value=9.9e-11  Score=107.90  Aligned_cols=240  Identities=10%  Similarity=0.081  Sum_probs=149.7

Q ss_pred             CCCCceeEEEEeccCCEEEEEec--CCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ec---------
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNS--GPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LN---------  113 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d---------  113 (359)
                      +|...+..++++|+++.++++..  +. ....|++||+.+++.+...........++|+ |++.++   .+         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~-~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGS-DWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSC-CEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCC-ceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            45556778899999998887653  22 3478999999999876542222224678899 987666   33         


Q ss_pred             ----CeEEEEEccccee--eeeEec---cCCCceeeeeecCCCccEEEec-CCCCeeEEEEecCCe--eeEEeecccccc
Q 018248          114 ----QKVYVYNFTDLKL--VDQIET---VVNPTGLCDVSQNAGPMVMACP-GLLKGQVRVEDYGTK--KSKYITAHASRI  181 (359)
Q Consensus       114 ----~~i~i~d~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~l~~~-g~~d~~v~~~~~~~~--~~~~~~~~~~~i  181 (359)
                          ..|++|++.+.+.  ...+..   +......+.++|+++.+++... +...+.+++++....  ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                2499999866542  222222   2233456788999887555432 223458888776543  556666666665


Q ss_pred             cEEEEccCCcEEE-EEeCC---CCeEEEEEcCCCcE--EEEeecCCCCcceEEEEecCCCCEEEEEcC-CC--cEEEEEc
Q 018248          182 ASIAMTLDGRFVA-TASSK---GTLIRVFNTMDGSL--LQEMRRGAERAEIYSLAFSSNAQWLAASSD-KG--TVHVFGL  252 (359)
Q Consensus       182 ~~~~~s~~~~~l~-~~~~d---g~~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~iw~~  252 (359)
                      ... ++++|..|+ ....+   +. |..+|+.++..  ...+..  +...+.  .|+++++.|+.... ++  .|++|++
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred             EEE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence            555 666666554 44433   46 89999987654  234443  223344  88999988876654 43  5888887


Q ss_pred             cCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecC---
Q 018248          253 KVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLD---  328 (359)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d---  328 (359)
                      +.+...                                           .+.++. +.+..++++++++.|+....+   
T Consensus       358 ~g~~~~-------------------------------------------~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~t  394 (693)
T 3iuj_A          358 EGKRVR-------------------------------------------EVALPGLGSVSGFNGKHDDPALYFGFENYAQ  394 (693)
T ss_dssp             TSCEEE-------------------------------------------EECCSSSSEEEECCCCTTCSCEEEEEECSSS
T ss_pred             CCCeeE-------------------------------------------EeecCCCceEEeeecCCCCCEEEEEecCCCC
Confidence            743200                                           011222 456677888888777766554   


Q ss_pred             -CeEEEEEeCC
Q 018248          329 -GSYYKCEFDP  338 (359)
Q Consensus       329 -g~i~v~~~~~  338 (359)
                       +.++.|++..
T Consensus       395 P~~l~~~d~~~  405 (693)
T 3iuj_A          395 PPTLYRFEPKS  405 (693)
T ss_dssp             CCEEEEECTTT
T ss_pred             CCEEEEEECCC
Confidence             7777776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=3e-11  Score=101.73  Aligned_cols=171  Identities=15%  Similarity=0.129  Sum_probs=122.0

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc-----------EEeeeccCcceeEEEEecceeEEE--ecCeEE
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR-----------YLGELSFRSEVKNVRLRRDRIVVV--LNQKVY  117 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~  117 (359)
                      ..+..+++++....++.++    . ..+.+|+++..+           ......++. |..++|  ++.+++  .++.|+
T Consensus        38 ~~~nlLais~~~gll~a~~----~-~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~  109 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAAS----G-SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALY  109 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEE----T-TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred             ccccEEEEcCCCCEEEEeC----C-CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence            3678889998888877666    2 467779865433           222334666 999999  666666  899999


Q ss_pred             EEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe
Q 018248          118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  197 (359)
                      +||+.+.........+...+..+.+.  ...  +++ ...||.+.+|+........   +...|++++|||+|  ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~--~p~--~av-~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNV--NNT--LVI-LNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEEC--SSE--EEE-EETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhhccCccceeecceeeEEec--CCC--EEE-EECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence            99997665555555555555544433  333  333 3369999999987544432   45689999999999  67899


Q ss_pred             CCCCeEEEEEcCCCcE--EEEeec----C---CCCcceEEEEecCCCCEEEE
Q 018248          198 SKGTLIRVFNTMDGSL--LQEMRR----G---AERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       198 ~dg~~i~iwd~~~~~~--~~~~~~----~---~~~~~i~~~~~s~~~~~l~~  240 (359)
                      .||. +++|+...++.  ..++..    +   .|...|.++.|.++++++++
T Consensus       180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999 99999877775  556621    1   14578999999999998876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=5.6e-10  Score=92.24  Aligned_cols=220  Identities=10%  Similarity=0.005  Sum_probs=140.2

Q ss_pred             CceEEEEEccCCCE-EEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            7 ITIHHLALNQDHGC-FATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         7 ~~v~~~~~s~~g~~-l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      .......|+|+|+. +.++. ++.|..|+.+ ++.. ...   .+...+..+.+.++++.++...    .++.|.+|+..
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~-~~~---~~~~~~~gl~~d~dG~l~v~~~----~~~~v~~~~~~  115 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD-VLL---DATAFTNGNAVDAQQRLVHCEH----GRRAITRSDAD  115 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE-EEE---ESCSCEEEEEECTTSCEEEEET----TTTEEEEECTT
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE-EEe---CCCCccceeeECCCCCEEEEEC----CCCEEEEECCC
Confidence            44578899999994 45555 7889999874 3322 122   2355677788888777443322    34789999975


Q ss_pred             CccEEeeec-----cCcceeEEEEecceeEEEec--------------------CeEEEEEcccceeeeeEeccCCCcee
Q 018248           85 ENRYLGELS-----FRSEVKNVRLRRDRIVVVLN--------------------QKVYVYNFTDLKLVDQIETVVNPTGL  139 (359)
Q Consensus        85 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (359)
                       ++......     ....+.++++.++|.+.+.|                    +.|+.+|..+++.....  .......
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g  192 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG  192 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence             55332222     11346789999999877732                    46777777666543332  2233456


Q ss_pred             eeeecCCCccEEEecCC---CCeeEEEEecCCeee---EEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248          140 CDVSQNAGPMVMACPGL---LKGQVRVEDYGTKKS---KYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS  212 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~---~d~~v~~~~~~~~~~---~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~  212 (359)
                      ++++|+++.++++....   ..+.|.+++.....+   ..+ .........++++++|++. +++.+ . |.+|+. +++
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-g-v~~~~~-~g~  268 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-G-VCVFDS-DGQ  268 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-E-EEEECT-TSC
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-c-EEEECC-CCC
Confidence            89999988766554211   025777766543212   111 1123456689999999944 44444 5 999997 677


Q ss_pred             EEEEeecCCCCcceEEEEecCCCCEEEEEcCCC
Q 018248          213 LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG  245 (359)
Q Consensus       213 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  245 (359)
                      .+..+...   ..+.+++|+++++.|..++.++
T Consensus       269 ~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          269 LLGHIPTP---GTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEEEEECS---SCCCEEEECTTSCEEEEEETTE
T ss_pred             EEEEEECC---CceeEEEEeCCCCEEEEEcCCe
Confidence            77777642   2588999999998888777664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=1.6e-11  Score=103.34  Aligned_cols=170  Identities=9%  Similarity=0.102  Sum_probs=124.1

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCc-----------ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCC
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYK-----------PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQ   74 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~   74 (359)
                      ..+++.+++++...++++|+...+.+|+++..+           ......    +.. +..+++  +++.++++.     
T Consensus        37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~----lp~-V~~l~f--d~~~L~v~~-----  104 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE----IPD-VIFVCF--HGDQVLVST-----  104 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE----CTT-EEEEEE--ETTEEEEEE-----
T ss_pred             cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee----CCC-eeEEEE--CCCEEEEEc-----
Confidence            347999999999999999996677889876332           112222    345 888888  777777662     


Q ss_pred             CCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           75 SNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      ++.|++||+.+........ +...+.++.+.+....++ .||.|.+||+.+++...    ....+.+++|+|.+  ..+ 
T Consensus       105 ~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~v-  177 (388)
T 1xip_A          105 RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAV-  177 (388)
T ss_dssp             SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEE-
T ss_pred             CCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEE-
Confidence            5899999988765544444 677788888876653333 99999999998776543    23468899999988  333 


Q ss_pred             ecCCCCeeEEEEecCCee---eEEe------e---cccccccEEEEccCCcEEEEE
Q 018248          153 CPGLLKGQVRVEDYGTKK---SKYI------T---AHASRIASIAMTLDGRFVATA  196 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~~~---~~~~------~---~~~~~i~~~~~s~~~~~l~~~  196 (359)
                        |..||.+++|..++..   .+.+      .   +|...|.++.|.+++.++++=
T Consensus       178 --g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          178 --LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             --EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             --EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence              4468999998777755   3445      2   367889999999999988763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=1.6e-09  Score=89.48  Aligned_cols=222  Identities=11%  Similarity=0.078  Sum_probs=139.3

Q ss_pred             CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccccee
Q 018248           51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL  126 (359)
Q Consensus        51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~  126 (359)
                      .......|.++++.++++..   .++.|..|+. +++. ..+. ....+..++++++|++++   .++.|.+|+.. ++.
T Consensus        45 ~~~egp~~~~~g~~l~~~d~---~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDL---VGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEET---TTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cCccCCeEeCCCCEEEEEEC---CCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence            34456778888887766654   4689999997 5553 3343 566789999999998777   34689999975 543


Q ss_pred             eeeEecc----CCCceeeeeecCCCccEEEec---CC-------------CCeeEEEEecCCeeeEEeecccccccEEEE
Q 018248          127 VDQIETV----VNPTGLCDVSQNAGPMVMACP---GL-------------LKGQVRVEDYGTKKSKYITAHASRIASIAM  186 (359)
Q Consensus       127 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~---g~-------------~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~  186 (359)
                      .......    ...+..+++.+++.  +.++.   |.             ..+.|+.++.....+..+. .....+.++|
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~  195 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAF  195 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEE
T ss_pred             EEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEE
Confidence            2221111    12345677887765  23321   11             1245666665433333333 4456688999


Q ss_pred             ccCCcEEEEEeCC------CCeEEEEEcCCCcEE--EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          187 TLDGRFVATASSK------GTLIRVFNTMDGSLL--QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       187 s~~~~~l~~~~~d------g~~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      +||++.|+.+...      +. |.+|++..+...  ..+... ..+.+..++++++|++.++ +.+| |.+|+.+...  
T Consensus       196 spdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~~~g-v~~~~~~g~~--  269 (305)
T 3dr2_A          196 SPDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-SGTG-VCVFDSDGQL--  269 (305)
T ss_dssp             CTTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-CSSE-EEEECTTSCE--
T ss_pred             cCCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-cCCc-EEEECCCCCE--
Confidence            9999988777665      57 999998765411  112111 2344567899999995544 4444 8899874321  


Q ss_pred             CCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCC
Q 018248          259 PGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDG  329 (359)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  329 (359)
                                                               +..+..+. .+..++|+|+++.|++++.++
T Consensus       270 -----------------------------------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          270 -----------------------------------------LGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             -----------------------------------------EEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             -----------------------------------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence                                                     01122333 367789999999999888865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.36  E-value=1.9e-08  Score=85.16  Aligned_cols=190  Identities=11%  Similarity=0.070  Sum_probs=121.0

Q ss_pred             ccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec--------cCcceeEEEEecceeEEE--ec------CeEEEE
Q 018248           60 FRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS--------FRSEVKNVRLRRDRIVVV--LN------QKVYVY  119 (359)
Q Consensus        60 ~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~--~d------~~i~i~  119 (359)
                      .+.+.+++.+.   .++.|.++|+.+.    +....++        .......+...|+|.++.  .+      +.|.++
T Consensus        93 ~~r~~l~v~~l---~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGL---RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBT---TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccC---CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEE
Confidence            34455554443   4699999998765    5555552        112456778889994444  44      789999


Q ss_pred             EcccceeeeeEeccCCC---ceeeeeecCCCccEEEecC------------------CCCeeEEEEecCC-eeeEEeecc
Q 018248          120 NFTDLKLVDQIETVVNP---TGLCDVSQNAGPMVMACPG------------------LLKGQVRVEDYGT-KKSKYITAH  177 (359)
Q Consensus       120 d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g------------------~~d~~v~~~~~~~-~~~~~~~~~  177 (359)
                      |.++.+.+.+++....+   ...+.|+|+++.  ++++.                  .....|.+|+... +.+.++...
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~--mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV--LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTE--EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCE--EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            99999999888644332   223667888874  44321                  2367899988865 444445432


Q ss_pred             --cccccEEEE--ccCCcEEEEEeC------CCCeEEEEEcCCCcE--EEEe--ecCC--C------------CcceEEE
Q 018248          178 --ASRIASIAM--TLDGRFVATASS------KGTLIRVFNTMDGSL--LQEM--RRGA--E------------RAEIYSL  229 (359)
Q Consensus       178 --~~~i~~~~~--s~~~~~l~~~~~------dg~~i~iwd~~~~~~--~~~~--~~~~--~------------~~~i~~~  229 (359)
                        ......+.|  +|+++++.+++.      ++. |.+|....++.  ...+  ....  .            ...+..+
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence              123445555  999998888775      446 87776655432  1111  1100  0            1357889


Q ss_pred             EecCCCCEEEEEcC-CCcEEEEEccCC
Q 018248          230 AFSSNAQWLAASSD-KGTVHVFGLKVD  255 (359)
Q Consensus       230 ~~s~~~~~l~~~~~-dg~i~iw~~~~~  255 (359)
                      .+|+||++|.++.. .+.|.+||+...
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            99999999877664 678999999744

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=8.3e-09  Score=84.73  Aligned_cols=230  Identities=12%  Similarity=0.060  Sum_probs=147.4

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ...+.+++++++|+++++.. ++.|..|+.+ ++.. ...+. .....+..+++.++++..+ +..   .++.|..+|..
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~-~~~~~~~~i~~~~~g~l~v-~~~---~~~~i~~~~~~  133 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLP-QPDSGPYGITEGLNGDIWF-TQL---NGDRIGKLTAD  133 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS-STTCCEEEEEECSTTCEEE-EET---TTTEEEEECTT
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCC-CCCCCCccceECCCCCEEE-Ecc---CCCeEEEECCC
Confidence            35788999999999888777 7889999987 4332 22221 2235566677766555333 332   35889999976


Q ss_pred             CccEEee-ec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCC
Q 018248           85 ENRYLGE-LS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        85 ~~~~~~~-~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                       ++.... +. ....+..+++.+++.+.+   .++.|..+|. +++... +..  .......+++.+++ .++++.  ..
T Consensus       134 -g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~--~~  207 (300)
T 2qc5_A          134 -GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDG-ALWFVE--IM  207 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTS-SEEEEE--TT
T ss_pred             -CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCC-CEEEEc--cC
Confidence             554422 22 345788999999988665   3678999998 554433 322  22334566777665 344443  23


Q ss_pred             CeeEEEEecCCeeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      .+.|.+++.++..... ...+...+.+++++++|++.++...++. |..||. +++.. .+........+.+++++++|+
T Consensus       208 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          208 GNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGS  284 (300)
T ss_dssp             TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTTSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCCCC
Confidence            5567777765543332 2334566889999999997666656677 999997 45443 332221335688999999998


Q ss_pred             EEEEEcCCCcEEEEEcc
Q 018248          237 WLAASSDKGTVHVFGLK  253 (359)
Q Consensus       237 ~l~~~~~dg~i~iw~~~  253 (359)
                      +.++.. . .|..++.+
T Consensus       285 l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          285 VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEECS-S-EEEEEEEC
T ss_pred             EEEEcc-C-ceEEeCCC
Confidence            766554 4 67766653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.32  E-value=3.8e-09  Score=96.66  Aligned_cols=225  Identities=9%  Similarity=0.053  Sum_probs=135.6

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCC-------ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRG-------GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      ..|++++ ++.|..+|.++++.+...... ....       .+........+..+++.+    .|+.|..+|..+|+.+.
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~v~v~~----~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQ-IDRSTGFKGCCDVVNRGVALWKGKVYVGA----WDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCC-CCGGGGGGSSSCSCCCCCEEETTEEEEEC----TTSEEEEEETTTCCEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCC-CCccccccccccCCCCCceEECCEEEEEc----CCCEEEEEECCCCCEEe
Confidence            3455555 899999999999888776653 1000       000111222455666655    57999999999999998


Q ss_pred             eeccC------cceeEEEEecceeEEE--e------cCeEEEEEcccceeeeeEeccCCCc-------------------
Q 018248           91 ELSFR------SEVKNVRLRRDRIVVV--L------NQKVYVYNFTDLKLVDQIETVVNPT-------------------  137 (359)
Q Consensus        91 ~~~~~------~~v~~~~~~~~~~~~~--~------d~~i~i~d~~~~~~~~~~~~~~~~~-------------------  137 (359)
                      .+...      ..+.+.-.-.++.+++  .      ++.|+.+|..+++.+..+.......                   
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             eecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            87732      2232211122455555  2      6899999999999988876532210                   


Q ss_pred             -------------eeeeeecCCCccEEEecCCCCe-------------------eEEEEec-CCeeeEEeec--cc----
Q 018248          138 -------------GLCDVSQNAGPMVMACPGLLKG-------------------QVRVEDY-GTKKSKYITA--HA----  178 (359)
Q Consensus       138 -------------~~~~~~~~~~~~~l~~~g~~d~-------------------~v~~~~~-~~~~~~~~~~--~~----  178 (359)
                                   ..+++.++.+.+++.+ +  ++                   .|..++. +++.+-.++.  |.    
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~-~--~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~  309 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGT-G--NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY  309 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEEC-C--CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEEC-C--CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence                         1345666666544433 2  32                   3555444 4555444432  21    


Q ss_pred             ---ccccEEEEccCC---cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC---------cce-----------------
Q 018248          179 ---SRIASIAMTLDG---RFVATASSKGTLIRVFNTMDGSLLQEMRRGAER---------AEI-----------------  226 (359)
Q Consensus       179 ---~~i~~~~~s~~~---~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~---------~~i-----------------  226 (359)
                         .....+....+|   ..++.++.+|. ++++|..+|+.+..+......         .++                 
T Consensus       310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          310 TSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             ccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence               122223334477   68889999999 999999999998776532100         011                 


Q ss_pred             -------EEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          227 -------YSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       227 -------~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                             ..++++|++.++++...+-...++..
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~  421 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD  421 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence                   14688898888887766544444443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.32  E-value=6.6e-09  Score=87.92  Aligned_cols=225  Identities=12%  Similarity=0.106  Sum_probs=141.3

Q ss_pred             c--cCCCEEEEec--CCceEEEEcCC--Ccceeeeecc-------cCCCCceeEEEEeccCCEEEEEecCCC--CCCeEE
Q 018248           15 N--QDHGCFATGT--ETGFRVYLSDP--YKPIMRRDFD-------RNPRGGTQLVSMLFRSNIICLVNSGPH--QSNKVM   79 (359)
Q Consensus        15 s--~~g~~l~~~~--d~~i~iw~~~~--~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~   79 (359)
                      +  +++++|++.+  ++.|.++|+.+  .+......++       .+ ......+...+++ ..+...++..  ..+.|.
T Consensus        90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred             CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence            7  8899987766  88999999863  3334434331       00 0122234555666 3322222100  247899


Q ss_pred             EEECCCccEEeeeccC-c---ceeEEEEecceeEEE-e---------------------cCeEEEEEcccceeeeeEecc
Q 018248           80 IWDDHENRYLGELSFR-S---EVKNVRLRRDRIVVV-L---------------------NQKVYVYNFTDLKLVDQIETV  133 (359)
Q Consensus        80 iwd~~~~~~~~~~~~~-~---~v~~~~~~~~~~~~~-~---------------------d~~i~i~d~~~~~~~~~~~~~  133 (359)
                      ++|.++++.+.++... .   --..+.|+|+++.++ .                     +.+|.+||+.+++.+.++...
T Consensus       168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            9999999999998722 2   234588899988777 3                     589999999988888888764


Q ss_pred             CC--Cceee--eeecCCCccEEEec---CCCCeeEEEEecCCee---eEEe--ecc----------------cccccEEE
Q 018248          134 VN--PTGLC--DVSQNAGPMVMACP---GLLKGQVRVEDYGTKK---SKYI--TAH----------------ASRIASIA  185 (359)
Q Consensus       134 ~~--~~~~~--~~~~~~~~~~l~~~---g~~d~~v~~~~~~~~~---~~~~--~~~----------------~~~i~~~~  185 (359)
                      ..  ...-+  +++|+++..++++.   -..+++|.+|..+...   .+.+  ...                ......+.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            21  11223  34888877666542   0035677663322211   1111  110                24578899


Q ss_pred             EccCCcEEEEEeC-CCCeEEEEEcCC---CcEEEEeecCCC------------CcceEEEEecCCCCEEEEEc
Q 018248          186 MTLDGRFVATASS-KGTLIRVFNTMD---GSLLQEMRRGAE------------RAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       186 ~s~~~~~l~~~~~-dg~~i~iwd~~~---~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~  242 (359)
                      +||||++|.++.. .+. |.+||+..   .+.+..+..+..            .+....++++|||++|+++.
T Consensus       328 lS~DGrfLYVSnrg~d~-VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGE-VRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTE-EEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999988876 455 99999863   355655554311            01368899999999999887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.30  E-value=1.8e-08  Score=85.81  Aligned_cols=223  Identities=9%  Similarity=0.058  Sum_probs=135.9

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCC----C-CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEee
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNP----R-GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGE   91 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h----~-~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~   91 (359)
                      +..+.+++ ++.|..+|.++++......+....    . ...........++.+++.+    .++.|..+|..+|+.+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS----EKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE----TTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc----CCCEEEEEECCCCCEEEE
Confidence            45666666 889999999998887766652000    0 1111122233456666665    579999999999998887


Q ss_pred             eccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCc-----eeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           92 LSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPT-----GLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        92 ~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      ......+.......++.+++  .++.|..+|..+++.+..........     ....+.  +..  +.. +..++.+..+
T Consensus       129 ~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~--v~~-g~~~g~l~~~  203 (376)
T 3q7m_A          129 TKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGA--AVV-GGDNGRVSAV  203 (376)
T ss_dssp             EECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTE--EEE-CCTTTEEEEE
T ss_pred             EeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCE--EEE-EcCCCEEEEE
Confidence            76443333222223455555  78899999999999888776533211     112222  232  333 4567777776


Q ss_pred             ec-CCeeeEEeecccc--c--cc---EEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          165 DY-GTKKSKYITAHAS--R--IA---SIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       165 ~~-~~~~~~~~~~~~~--~--i~---~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      +. +++.+-.......  .  +.   .+.-.|  .+..++.++.++. +..+|..+++.+.....    .....+..  +
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~----~~~~~~~~--~  276 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKREL----GSVNDFIV--D  276 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECC----CCEEEEEE--E
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccC----CCCCCceE--E
Confidence            65 4555444332110  0  00   010111  2456777888898 99999999998877653    23444444  3


Q ss_pred             CCEEEEEcCCCcEEEEEccCCC
Q 018248          235 AQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +..|+.++.++.|..+|.++++
T Consensus       277 ~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          277 GNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             TTEEEEEETTCCEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCc
Confidence            5677778889999999999876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.29  E-value=3e-09  Score=97.33  Aligned_cols=234  Identities=8%  Similarity=0.009  Sum_probs=147.7

Q ss_pred             CCCEEEEec-CCceEEEEcCCCcceeeeecc-cCCC-CceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEee
Q 018248           17 DHGCFATGT-ETGFRVYLSDPYKPIMRRDFD-RNPR-GGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGE   91 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-~~h~-~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~   91 (359)
                      ++..+++++ |+.+..+|..+++.+...... .... ..+...-. ..++.+++.+.+..  .++.|..+|..+|+.+..
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~-v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR-VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE-EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE-EECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            355677777 999999999999888766641 0000 11111101 12344544432210  158999999999999887


Q ss_pred             eccCc-c--------------------------------eeEEEEecceeEEE---ec-------------------CeE
Q 018248           92 LSFRS-E--------------------------------VKNVRLRRDRIVVV---LN-------------------QKV  116 (359)
Q Consensus        92 ~~~~~-~--------------------------------v~~~~~~~~~~~~~---~d-------------------~~i  116 (359)
                      +.... .                                ...++++|++..++   .+                   +.|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            75211 1                                12467777765554   22                   259


Q ss_pred             EEEEcccceeeeeEeccCCC---------ceeeeeecCCCc-cEEEecCCCCeeEEEEec-CCeeeEEeeccc-------
Q 018248          117 YVYNFTDLKLVDQIETVVNP---------TGLCDVSQNAGP-MVMACPGLLKGQVRVEDY-GTKKSKYITAHA-------  178 (359)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~l~~~g~~d~~v~~~~~-~~~~~~~~~~~~-------  178 (359)
                      ..+|..+++.+..++.....         ........+++. .+++. ++.+|.+++.+. +++.+..+....       
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~-~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH-APKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE-CCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE-ECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            99999999998887653221         112223334431 22343 668999999655 455544332110       


Q ss_pred             ----cc------------------------ccEEEEccCCcEEEEEeCC-------------------------------
Q 018248          179 ----SR------------------------IASIAMTLDGRFVATASSK-------------------------------  199 (359)
Q Consensus       179 ----~~------------------------i~~~~~s~~~~~l~~~~~d-------------------------------  199 (359)
                          .+                        -..++++|++.++++...+                               
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence                00                        0257889988887775431                               


Q ss_pred             ------------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          200 ------------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       200 ------------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                                  |. |..||+.+++.+-++..+   .++....++.++.+++.++.||.+++||.++++
T Consensus       445 ~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          445 FFNAEPPKSKPFGR-LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EECSSCCCSCCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccCCCCCccE-EEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence                        67 999999999998887642   344555566778888889999999999999987

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.28  E-value=3e-10  Score=95.35  Aligned_cols=226  Identities=9%  Similarity=0.049  Sum_probs=144.5

Q ss_pred             EEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccCC----CCceeEEEEeccCCEEEEEecCCCCC
Q 018248           11 HLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRNP----RGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      .++++|||+++.++.           ++.|.+||+.+++......+..+.    ......+.++++++.++++..+  ..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~--~~  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG--SS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS--SS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC--CC
Confidence            699999999997774           577999999998776554431000    1235678899999988877632  13


Q ss_pred             CeEEE--EECCCccEEeeeccCcceeEEEEecce--eEEE--ecCeEEEEEccc-----ceeee----eEeccCCCceee
Q 018248           76 NKVMI--WDDHENRYLGELSFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTD-----LKLVD----QIETVVNPTGLC  140 (359)
Q Consensus        76 ~~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~-----~~~~~----~~~~~~~~~~~~  140 (359)
                      ..+.+  +|..+   +..+...+.   ..+.|++  .+++  .|+.+.+.|+.+     ++...    .+.....+.   
T Consensus       147 ~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---  217 (368)
T 1mda_H          147 AAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---  217 (368)
T ss_dssp             CEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---
T ss_pred             CeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---
Confidence            67888  99877   445543222   2234554  3333  788888888876     44331    122222222   


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecCCee---eEEeec----------ccccccEEEEccCCcEEEEEeC-C-------
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYGTKK---SKYITA----------HASRIASIAMTLDGRFVATASS-K-------  199 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~---~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~-d-------  199 (359)
                      . .+++...++++   . +.+.+.+.....   +..+..          .......++++|+++.++++.. .       
T Consensus       218 ~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~  292 (368)
T 1mda_H          218 Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence            3 56655533332   3 677775543321   111110          1112233789999998876543 2       


Q ss_pred             -CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEEc-CCCcEEEEEccCCC
Q 018248          200 -GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAASS-DKGTVHVFGLKVDS  256 (359)
Q Consensus       200 -g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~  256 (359)
                       +. +.++|+.+.+.+..+..+   .....++|+|||+ .+++.. .++.|.++|+.+.+
T Consensus       293 ~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          293 AEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence             35 679999999999988763   3688999999998 455555 58999999999876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=9.8e-09  Score=94.18  Aligned_cols=228  Identities=10%  Similarity=0.057  Sum_probs=133.3

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCC------CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR------GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      +..+++++ ++.|..+|.++++.+..........      ...........+..+++.+    .|+.|..+|..+|+.+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~----~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV----LDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC----TTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc----cCCEEEEEECCCCCEee
Confidence            44565666 8999999999999887765420000      0000011122355565555    58999999999999988


Q ss_pred             eeccC------cceeEEEEecceeEEE-e-------cCeEEEEEcccceeeeeEeccC-CC-------------------
Q 018248           91 ELSFR------SEVKNVRLRRDRIVVV-L-------NQKVYVYNFTDLKLVDQIETVV-NP-------------------  136 (359)
Q Consensus        91 ~~~~~------~~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~-~~-------------------  136 (359)
                      .+...      ..+.+.-.-.++.+++ .       ++.|+.||.++|+.+..+.... .+                   
T Consensus       146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            77632      1221111112566665 2       6899999999999988775311 00                   


Q ss_pred             -----------ceeeeeecCCCccEEEecCCCCe-------------------eEEEEec-CCeeeEEeec--cc-----
Q 018248          137 -----------TGLCDVSQNAGPMVMACPGLLKG-------------------QVRVEDY-GTKKSKYITA--HA-----  178 (359)
Q Consensus       137 -----------~~~~~~~~~~~~~~l~~~g~~d~-------------------~v~~~~~-~~~~~~~~~~--~~-----  178 (359)
                                 ....++.+..+.+++.   ..++                   .|..++. +++.+-.++.  |.     
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~---~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~  302 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIG---VGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT  302 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEE---CCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEe---CCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence                       0134566665543333   2343                   2555554 4555555443  21     


Q ss_pred             --ccccEEEEccCCc---EEEEEeCCCCeEEEEEcCCCcEEEEeecCCC--------------------------Cc---
Q 018248          179 --SRIASIAMTLDGR---FVATASSKGTLIRVFNTMDGSLLQEMRRGAE--------------------------RA---  224 (359)
Q Consensus       179 --~~i~~~~~s~~~~---~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~--------------------------~~---  224 (359)
                        .++.......+|+   .++.++.+|. ++++|..+|+.+...+....                          ..   
T Consensus       303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~  381 (689)
T 1yiq_A          303 ATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV  381 (689)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred             CCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence              1111222223665   7889999999 99999999998854432110                          00   


Q ss_pred             --------ceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          225 --------EIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       225 --------~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                              .-..++++|+..++++...+....++...
T Consensus       382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  418 (689)
T 1yiq_A          382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP  418 (689)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred             CCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence                    01126888888888888776655555443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.26  E-value=1.3e-09  Score=90.96  Aligned_cols=261  Identities=11%  Similarity=0.045  Sum_probs=151.2

Q ss_pred             ceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248            8 TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      .+.++...++|. |.+++++ +..+|. +++........   ........+.  .+.+.+.+    .++.|..+|.. ++
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~-l~~~d~-~g~~~~~~~~~---~~~~~~~~~~--~~~l~v~t----~~~~l~~~d~~-g~  127 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK-VYAINP-DGTEKWRFDTK---KAIVSDFTIF--EDILYVTS----MDGHLYAINTD-GT  127 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE-EEEECC-CGGGGGGSCC--------CCEEEE--TTEEEEEC----TTSEEEEECTT-SC
T ss_pred             cccceEEecCCc-EEEecCc-EEEECC-CCcEEEEEECC---CCcccCceEE--CCEEEEEe----cCCEEEEEcCC-CC
Confidence            345566666664 4445544 777765 33333222221   1112222222  44455444    46889999977 77


Q ss_pred             EEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           88 YLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        88 ~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      ...... ....+.++...+++.+++  .++.|..+|.. ++....+......+..+....++.  +.+.  +  +.+..+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v~--t--~~l~~~  200 (330)
T 3hxj_A          128 EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYFG--S--DKVYAI  200 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEEE--S--SSEEEE
T ss_pred             EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEEE--e--CEEEEE
Confidence            666665 444566677777777666  56899999987 777666665444444444444433  3333  2  556666


Q ss_pred             ecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC
Q 018248          165 DYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK  244 (359)
Q Consensus       165 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  244 (359)
                      +.++............+.++...++|.+ ..++.++. |..+| .+++.+..+..  ....+..+.+.+++. |..++.+
T Consensus       201 d~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~g-l~~~~-~~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~  274 (330)
T 3hxj_A          201 NPDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGH-LYAIN-PDGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYD  274 (330)
T ss_dssp             CTTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTE-EEEEC-TTSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTT
T ss_pred             CCCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCe-EEEEC-CCCCEeEEeeC--CCCccccceEcCCCe-EEEecCC
Confidence            6666666565555567888888888764 45666677 88887 46666666653  222334455555564 5556777


Q ss_pred             CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEE
Q 018248          245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVI  324 (359)
Q Consensus       245 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  324 (359)
                      |.|..+|. +++..                                          ..+..+...+.++...+++ .|.+
T Consensus       275 ggl~~~d~-~g~~~------------------------------------------~~~~~~~~~~~~~~~d~~g-~l~~  310 (330)
T 3hxj_A          275 GHLYAINP-DGTEK------------------------------------------WNFETGSWIIATPVIDENG-TIYF  310 (330)
T ss_dssp             CEEEEECT-TSCEE------------------------------------------EEEECSSCCCSCCEECTTC-CEEE
T ss_pred             CCEEEECC-CCcEE------------------------------------------EEEEcCCccccceEEcCCC-EEEE
Confidence            77888884 33310                                          0012233445556666665 5677


Q ss_pred             EecCCeEEEEEeCC
Q 018248          325 VGLDGSYYKCEFDP  338 (359)
Q Consensus       325 ~~~dg~i~v~~~~~  338 (359)
                      ++.+|.+++...+.
T Consensus       311 gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          311 GTRNGKFYALFNLE  324 (330)
T ss_dssp             ECTTSCEEEEEC--
T ss_pred             EcCCCeEEEEeccc
Confidence            99999999886654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=9.3e-10  Score=92.40  Aligned_cols=247  Identities=7%  Similarity=-0.072  Sum_probs=152.5

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecC-------CCCCCeEEEEECCCccEEeeeccC-----
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG-------PHQSNKVMIWDDHENRYLGELSFR-----   95 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-------~~~d~~i~iwd~~~~~~~~~~~~~-----   95 (359)
                      .|.++|.++++.+.....  |.. +  .+.++++++.++++...       . .++.|.+||+.+++.+.++...     
T Consensus        47 ~vsvID~~t~~v~~~i~v--G~~-P--~i~~spDg~~lyVan~~~~r~~~G~-~~~~VsviD~~T~~vv~~I~v~~~~~~  120 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG--AFL-S--LAVAGHSGSDFALASTSFARSAKGK-RTDYVEVFDPVTFLPIADIELPDAPRF  120 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE--CTT-C--EEEECTTSSCEEEEEEEETTTTSSS-EEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred             eEEEEECCCCeEEEEEeC--CCC-C--ceEECCCCCEEEEEcccccccccCC-CCCEEEEEECCCCCEEEEEECCCcccc
Confidence            788999998877654444  332 3  68999999888877521       1 3589999999999999998732     


Q ss_pred             ---cceeEEEEecceeEEE--e---cCeEEE--EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEe
Q 018248           96 ---SEVKNVRLRRDRIVVV--L---NQKVYV--YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED  165 (359)
Q Consensus        96 ---~~v~~~~~~~~~~~~~--~---d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~  165 (359)
                         .....+.++|||++++  .   ...+.+  +|+.+   +..+....    +..+.|+++..+++.  +.|+.+.+.+
T Consensus       121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~~~~~p~g~~~~~~~--~~dg~~~~vd  191 (368)
T 1mda_H          121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----CFHIHPGAAATHYLG--SCPASLAASD  191 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----CCCCEEEETTEEECC--CCTTSCEEEE
T ss_pred             ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----ceEEccCCCeEEEEE--cCCCCEEEEE
Confidence               3567899999998776  2   457888  88866   44554322    133456666655543  3466555533


Q ss_pred             cCC-----eeeE-----EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc--EEEEeecC--------CCCcc
Q 018248          166 YGT-----KKSK-----YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS--LLQEMRRG--------AERAE  225 (359)
Q Consensus       166 ~~~-----~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~--------~~~~~  225 (359)
                      ...     ..+.     .+.....+.   . ++++..++..+. +. |.+.|..+..  .+..+...        ..+..
T Consensus       192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             CccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccccccCc
Confidence            332     1111     111112232   3 566666656666 88 9999986543  22222210        00111


Q ss_pred             eEEEEecCCCCEEEEEcC---------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEec
Q 018248          226 IYSLAFSSNAQWLAASSD---------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS  296 (359)
Q Consensus       226 i~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (359)
                      ...++++||++.++.+..         ++.+.++|+.+.+...                            .        
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~----------------------------~--------  309 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG----------------------------P--------  309 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE----------------------------C--------
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE----------------------------E--------
Confidence            122689999998876543         2356799999876210                            0        


Q ss_pred             ccceeEEeecCCcEEEeeecccCCEE-EEEe-cCCeEEEEEeCC
Q 018248          297 KWSMAQFRLPENVQYLVGFGRQNNTI-VIVG-LDGSYYKCEFDP  338 (359)
Q Consensus       297 ~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~-~dg~i~v~~~~~  338 (359)
                            +.++ .....++|+|||+.+ ++.. .++.|.++++..
T Consensus       310 ------i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          310 ------ISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             ------CEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             ------EECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence                  1111 134689999999854 4444 489999998865

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.24  E-value=2.2e-08  Score=87.82  Aligned_cols=190  Identities=14%  Similarity=0.088  Sum_probs=131.2

Q ss_pred             EEEec-----cCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEE-e-cceeEEE-e-------------
Q 018248           56 VSMLF-----RSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRL-R-RDRIVVV-L-------------  112 (359)
Q Consensus        56 ~~~~~-----~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~~~-~-------------  112 (359)
                      ..+++     +++++++...   .+..|.+.|+.+.++...+.  ....+..+++ + |++.+++ .             
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~  166 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  166 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             cccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence            55555     5566665443   46889999999999888444  4566888887 4 8887776 2             


Q ss_pred             -------cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC------------e--------------
Q 018248          113 -------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK------------G--------------  159 (359)
Q Consensus       113 -------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d------------~--------------  159 (359)
                             ++.+.+.|..+.+...++....+ ...++++|+++..++.+-.++.            .              
T Consensus       167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v  245 (595)
T 1fwx_A          167 MEDVANYVNVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  245 (595)
T ss_dssp             TTCGGGEEEEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             cccccccCceEEEEECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence                   34899999999999998876554 4568899998876665532211            1              


Q ss_pred             ---------eEEEEecCC---ee-eEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCc------------E
Q 018248          160 ---------QVRVEDYGT---KK-SKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGS------------L  213 (359)
Q Consensus       160 ---------~v~~~~~~~---~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~------------~  213 (359)
                               .|.+-+...   .. +..+.. .....++.++|||+++++++ .+.. |.++|+.+.+            .
T Consensus       246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          246 AAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             HHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             cCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccce
Confidence                     233322222   22 233332 23567899999999887776 4566 9999998653            3


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ..++..   ......++|+|+|...++.-.|++|.+||++.
T Consensus       324 ~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          324 VAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            445543   24688999999995556667899999999987

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.21  E-value=1.3e-07  Score=80.53  Aligned_cols=219  Identities=9%  Similarity=0.042  Sum_probs=132.6

Q ss_pred             CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC
Q 018248           17 DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR   95 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~   95 (359)
                      ++..+.+++ ++.|..+|.++++......+.   ........+  .++.+++.+    .++.|..+|..+|+.+..+...
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~---~~~~~~p~~--~~~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVA---GEALSRPVV--SDGLVLIHT----SNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECS---SCCCSCCEE--ETTEEEEEC----TTSEEEEEETTTCCEEEEEECC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCC---CceEcCCEE--ECCEEEEEc----CCCeEEEEECCCCcEEEEEeCC
Confidence            344566666 899999999998887766653   111111111  244555545    5799999999999988887643


Q ss_pred             cce------eEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCce-------eeeeec--CCCccEEEecCCCC
Q 018248           96 SEV------KNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTG-------LCDVSQ--NAGPMVMACPGLLK  158 (359)
Q Consensus        96 ~~v------~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~l~~~g~~d  158 (359)
                      ..+      ...... ++.+++  .++.+..+|..+++.+...........       .+...|  .+..+ ++  ++.+
T Consensus       173 ~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v-~~--~~~~  248 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVV-FA--LAYN  248 (376)
T ss_dssp             C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEE-EE--ECTT
T ss_pred             CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEE-EE--EecC
Confidence            333      222233 455555  688999999999988877654321000       000111  22332 22  3356


Q ss_pred             eeEEEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248          159 GQVRVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW  237 (359)
Q Consensus       159 ~~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  237 (359)
                      +.+..++. +++.+....  ......+..  ++..++.++.++. |..+|..+++.+...... ....+.....  .+..
T Consensus       249 g~l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~~  320 (376)
T 3q7m_A          249 GNLTALDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNGN  320 (376)
T ss_dssp             SCEEEEETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ETTE
T ss_pred             cEEEEEECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--ECCE
Confidence            77777555 455443332  222333433  4567778888998 999999999988766521 1112222233  2567


Q ss_pred             EEEEcCCCcEEEEEccCCC
Q 018248          238 LAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       238 l~~~~~dg~i~iw~~~~~~  256 (359)
                      |+.++.+|.|.++|.++++
T Consensus       321 l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          321 LVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EEEECTTSEEEEEETTTCC
T ss_pred             EEEEeCCCeEEEEECCCCc
Confidence            8888899999999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=1.9e-08  Score=79.89  Aligned_cols=218  Identities=10%  Similarity=0.036  Sum_probs=141.4

Q ss_pred             ccEEeeeccCcc--eeEEEEecceeEEE-e----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           86 NRYLGELSFRSE--VKNVRLRRDRIVVV-L----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        86 ~~~~~~~~~~~~--v~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      .+.+.++.|...  ...+.|++++.+.. .    ++.|.++|+.+++.+..+...... ....+.++++.++.+.  -.+
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~g~~lyv~t--~~~   85 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLLNEKLYQVV--WLK   85 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEE--TTC
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEeCCEEEEEE--ecC
Confidence            456667776643  57999999775555 2    479999999999999888654332 2234555566655554  357


Q ss_pred             eeEEEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc---ceEEEEecCC
Q 018248          159 GQVRVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA---EIYSLAFSSN  234 (359)
Q Consensus       159 ~~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~~  234 (359)
                      +.+.+++. +.+.+..+... . -....+++||+.|+++..++. |.++|..+.+.+..+..+....   .++.+.|. +
T Consensus        86 ~~v~viD~~t~~v~~~i~~g-~-~~g~glt~Dg~~l~vs~gs~~-l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ-M-KDGWGLATDGKILYGSDGTSI-LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC-S-SSCCEEEECSSSEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECCCCcEEEEEECC-C-CCeEEEEECCCEEEEECCCCe-EEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            88888665 45666666533 1 123446678887777777788 9999999999888887542222   36788888 7


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      |+..+....++.|.+.|..+++...                      .+.+ .+..+.... .     -.......+.++
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~----------------------~I~~-~g~~~~~~~-~-----~~~~~~v~nGIa  212 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLG----------------------WILL-PNLRKKLID-E-----GFRDIDVLNGIA  212 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEE----------------------EEEC-HHHHHHHHH-T-----TCTTCCCEEEEE
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEE----------------------EEEC-CCccccccc-c-----cccccCceEEEE
Confidence            7666666667899999999987210                      0000 000000000 0     000113568999


Q ss_pred             ecccCCEEEEEe-cCCeEEEEEeCCC
Q 018248          315 FGRQNNTIVIVG-LDGSYYKCEFDPM  339 (359)
Q Consensus       315 ~s~~~~~l~~~~-~dg~i~v~~~~~~  339 (359)
                      |+|+++.+++++ ..+++++-++.+.
T Consensus       213 ~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          213 WDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999987766666 5888998888654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.19  E-value=2.8e-08  Score=91.20  Aligned_cols=232  Identities=11%  Similarity=0.056  Sum_probs=143.6

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCC---CceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEee
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR---GGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGE   91 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~   91 (359)
                      +..+++++ |+.+..+|.++++.+...... .+.   ..+...-.. ..+.+++...+..  .++.|..||..+|+.+..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTR-ADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC-SCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCc-CCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            45677777 999999999999888766541 011   111110011 1344444332210  268999999999998877


Q ss_pred             ecc-C-c------------------------------ceeEEEEecceeEEE---ecC-------------------eEE
Q 018248           92 LSF-R-S------------------------------EVKNVRLRRDRIVVV---LNQ-------------------KVY  117 (359)
Q Consensus        92 ~~~-~-~------------------------------~v~~~~~~~~~~~~~---~d~-------------------~i~  117 (359)
                      +.. . .                              ....++++|+...++   .++                   .|.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            641 1 0                              012467787655444   333                   499


Q ss_pred             EEEcccceeeeeEeccCCCc---------eeeeeecCCCc-cEEEecCCCCeeEEEEecC-CeeeEEeeccc--------
Q 018248          118 VYNFTDLKLVDQIETVVNPT---------GLCDVSQNAGP-MVMACPGLLKGQVRVEDYG-TKKSKYITAHA--------  178 (359)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~--------  178 (359)
                      .+|..+|+.+..++......         ....+..+++. .+++. ++.+|.+++++.. ++.+.......        
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~-~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQ-APKNGFFYVIDRATGELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE-CCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEE-ECCCCeEEEEECCCCCEeccccccccccccccC
Confidence            99999999998886532211         11122223331 13444 6789999996654 44432211000        


Q ss_pred             -------------------------------ccccEEEEccCCcEEEEEeC-----------------------------
Q 018248          179 -------------------------------SRIASIAMTLDGRFVATASS-----------------------------  198 (359)
Q Consensus       179 -------------------------------~~i~~~~~s~~~~~l~~~~~-----------------------------  198 (359)
                                                     ..-..++++|+..++++...                             
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                                           00123788998887776532                             


Q ss_pred             ----------------CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          199 ----------------KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       199 ----------------dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                                      +|. |..||+.+++.+-++..+   .++..-.++..+.+++.++.||.++.||.++++
T Consensus       438 ~~p~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccCcccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence                            377 999999999998888753   233334556678899999999999999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.16  E-value=1.8e-07  Score=75.45  Aligned_cols=230  Identities=4%  Similarity=-0.069  Sum_probs=138.1

Q ss_pred             CCEEEEecCCceEEEEcCCCccee---eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-
Q 018248           18 HGCFATGTETGFRVYLSDPYKPIM---RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-   93 (359)
Q Consensus        18 g~~l~~~~d~~i~iw~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-   93 (359)
                      |.+|..+..+.|+.++++......   ...+. ........+++.+..+.+.++..   ..+.|..++...+.....+. 
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~---~~~~I~~~~~~g~~~~~~~~~   76 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQ   76 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECT
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEEC---CCCEEEEEecCCCCcEEEEEC
Confidence            456666665678888887543210   01110 00233456777776677776654   35899999987654433333 


Q ss_pred             cCcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe
Q 018248           94 FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK  169 (359)
Q Consensus        94 ~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~  169 (359)
                      .......+++++++ .+.+   ..+.|.++++..................+++.|++..++++..+...+.|.....++.
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence            22567899999864 4443   5678999998543222222222233466888887776666543222467777777765


Q ss_pred             eeEEee-cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcE
Q 018248          170 KSKYIT-AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV  247 (359)
Q Consensus       170 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  247 (359)
                      ....+. ..-.....++++|++..|..+.. .+. |.++|.........+..   ......++.. ++.++++....+.|
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v  231 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSV  231 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEECCCCeE
Confidence            544442 22345788999998776665554 456 99999865443333332   2344667664 34445555566889


Q ss_pred             EEEEccCCC
Q 018248          248 HVFGLKVDS  256 (359)
Q Consensus       248 ~iw~~~~~~  256 (359)
                      .++|..+++
T Consensus       232 ~~~d~~~g~  240 (267)
T 1npe_A          232 IAMDLAISK  240 (267)
T ss_dssp             EEEETTTTE
T ss_pred             EEEeCCCCC
Confidence            999988765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=6e-07  Score=72.41  Aligned_cols=216  Identities=6%  Similarity=-0.030  Sum_probs=133.6

Q ss_pred             ceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            8 TIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      .+..++|++++..|..+.  ++.|..++.+......  .+. ........+++.+.+..+.++..   ..+.|.+++...
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~-~~~~~p~~ia~d~~~~~lyv~d~---~~~~I~~~~~~g  110 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--IIR-QDLGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEC-TTCCCEEEEEEETTTTEEEEEET---TTTEEEEEETTS
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--EEE-CCCCCccEEEEEecCCeEEEEEC---CCCEEEEEEcCC
Confidence            456899999776665555  7889999987643321  121 11245567778776666666654   358999999764


Q ss_pred             ccEEeeec-cCcceeEEEEecc-eeEEE---e--cCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCCC
Q 018248           86 NRYLGELS-FRSEVKNVRLRRD-RIVVV---L--NQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        86 ~~~~~~~~-~~~~v~~~~~~~~-~~~~~---~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      ........ .......++++|+ +.+.+   .  .+.|..+++. ++....+. ........++++++++.++++..  .
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--~  187 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--G  187 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEET--T
T ss_pred             CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC--C
Confidence            43222222 2246789999995 54444   2  3688888874 33333332 22233456888888777666643  4


Q ss_pred             CeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          158 KGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       158 d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      .+.|.+.+.++.....+.........++..  +..|+.+. ..+. |..+|..+++.+..+..+. ......+++.|++.
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~  263 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred             CCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe-EEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence            567888777765444433222334566653  45555555 4566 9999999999988886532 12467788888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.10  E-value=2.9e-07  Score=73.18  Aligned_cols=195  Identities=11%  Similarity=0.044  Sum_probs=132.2

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc--ceeEEEEecceeEEE--ecCeEEEEEcccceeee
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS--EVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~  128 (359)
                      ...+.++++ ..+..+++.. .++.|.++|+.+++.+..+....  ....+++..+..+++  .++.+.++|..+.+.+.
T Consensus        23 ~~Gl~~~~d-g~Lyvstg~~-~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAEN-DTLFESTGLY-GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECST-TEEEEEECST-TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCC-CeEEEECCCC-CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence            456677665 3444443322 35899999999999999886333  233556665444444  78999999999999999


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeeccc-----ccccEEEEccCCcEEEEEeCCCCe
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHA-----SRIASIAMTLDGRFVATASSKGTL  202 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~~  202 (359)
                      ++... .+ .-..++++++.++++  . .++.|.+.+... +.+..+.-..     ..++.+.|. +|...+....++. 
T Consensus       101 ~i~~g-~~-~g~glt~Dg~~l~vs--~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~-  173 (266)
T 2iwa_A          101 NFTHQ-MK-DGWGLATDGKILYGS--D-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC-  173 (266)
T ss_dssp             EEECC-SS-SCCEEEECSSSEEEE--C-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-
T ss_pred             EEECC-CC-CeEEEEECCCEEEEE--C-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe-
Confidence            88754 12 235577888775543  2 367888865544 5555554221     135678887 7765555545677 


Q ss_pred             EEEEEcCCCcEEEEeecCC-----------CCcceEEEEecCCCCE-EEEEcCCCcEEEEEccCCC
Q 018248          203 IRVFNTMDGSLLQEMRRGA-----------ERAEIYSLAFSSNAQW-LAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~  256 (359)
                      |.+.|..+++.+..+....           .....+.++|+|+++. ++++...+.+.+.++....
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            9999999999998887420           0125689999999865 5566678889999987754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=3.5e-08  Score=82.25  Aligned_cols=217  Identities=10%  Similarity=0.008  Sum_probs=142.5

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cC
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FR   95 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~   95 (359)
                      +..+.+++ ++.+..+|.+ ++........   ...+..+....++ .+.+.+    .++.|..+|.. ++.+..+. ..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~---~~~~~~~~~~~~g-~l~vgt----~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK---KAIYATPIVSEDG-TIYVGS----NDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECS---SCCCSCCEECTTS-CEEEEC----TTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCC---CceeeeeEEcCCC-EEEEEc----CCCEEEEECCC-CCEeEEEecCC
Confidence            44566666 8999999988 6555444432   3333333333333 344444    46899999988 87777766 44


Q ss_pred             cceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEe
Q 018248           96 SEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYI  174 (359)
Q Consensus        96 ~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~  174 (359)
                      ..+.++...+++.+.+ . +.|..+| .+++...........+..+...+++ .+++++   .++.+..++.++..+..+
T Consensus       177 ~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~~~g~~~~~~  250 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAINPDGTEKWRF  250 (330)
T ss_dssp             CCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEECTTSCEEEEE
T ss_pred             CceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEECCCCCEeEEe
Confidence            5677778878888777 6 9999999 6777776666555555556665554 333433   456676667777766666


Q ss_pred             ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          175 TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       175 ~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      ......+..+.+.+++. |..++.+|. |..+|. +++.+..+..  ....+.++...++|++. .++.+|.+++...+.
T Consensus       251 ~~~~~~~~~~~~~~~g~-l~v~t~~gg-l~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          251 KTGKRIESSPVIGNTDT-IYFGSYDGH-LYAINP-DGTEKWNFET--GSWIIATPVIDENGTIY-FGTRNGKFYALFNLE  324 (330)
T ss_dssp             ECSSCCCSCCEECTTSC-EEEECTTCE-EEEECT-TSCEEEEEEC--SSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred             eCCCCccccceEcCCCe-EEEecCCCC-EEEECC-CCcEEEEEEc--CCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence            55555556667766665 567778878 999995 7877776654  33456777777788654 578899999988776


Q ss_pred             CC
Q 018248          255 DS  256 (359)
Q Consensus       255 ~~  256 (359)
                      .+
T Consensus       325 ~~  326 (330)
T 3hxj_A          325 HH  326 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.08  E-value=1e-10  Score=99.31  Aligned_cols=178  Identities=10%  Similarity=0.025  Sum_probs=98.1

Q ss_pred             cCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCC-
Q 018248           61 RSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNP-  136 (359)
Q Consensus        61 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~-  136 (359)
                      .++.+++.+    .|+.|..||..+|+.+..+.. ..+.+..+..++..++   .|+.|+.||.++++.+..+..+... 
T Consensus         8 ~~~~v~~gs----~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVST----LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEE----TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEc----CCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            456666666    689999999999999988876 5565555566664444   6999999999888876665432110 


Q ss_pred             ce-eeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          137 TG-LCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       137 ~~-~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      +. ...+. .+..  +++ |+.++.++.++.. ++.+..+..+.    ...++|++..+++++.++. |+.||.++|+.+
T Consensus        83 ~~~sp~~~-~~~~--v~~-g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~  153 (369)
T 2hz6_A           83 VQASPCRS-SDGI--LYM-GKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELR  153 (369)
T ss_dssp             HTTCSCC--------CCC-CEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCC
T ss_pred             cccCceEe-cCCE--EEE-EeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEE
Confidence            10 11111 2222  333 5578889887765 55554444432    2355678889999999999 999999999876


Q ss_pred             EEeecCCCCcceEEEEecCCC---CEEEEEcCCCcEEEEEccCCC
Q 018248          215 QEMRRGAERAEIYSLAFSSNA---QWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..+...    .....+++++.   ..+++++.+|.|+.||.++++
T Consensus       154 W~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          154 WNATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             CEEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             EeEecc----cccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            665431    11223344432   456678889999999999876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=2.2e-08  Score=87.81  Aligned_cols=233  Identities=13%  Similarity=0.062  Sum_probs=153.4

Q ss_pred             cCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEE-e-ccCCEEEEEec---------------CCCCCC
Q 018248           16 QDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSM-L-FRSNIICLVNS---------------GPHQSN   76 (359)
Q Consensus        16 ~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~~~~~~~---------------~~~~d~   76 (359)
                      +||+++.+..  ++.|.+.|+++.+......+.  .......+++ . |+.++++..+.               .. .++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~-~~~  175 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN-YVN  175 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG-EEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc-cCc
Confidence            4899887766  667999999987765444553  1234556665 4 77888766531               11 457


Q ss_pred             eEEEEECCCccEEeeeccCcceeEEEEecceeEEE--e-c--------------------------------------Ce
Q 018248           77 KVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L-N--------------------------------------QK  115 (359)
Q Consensus        77 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~-d--------------------------------------~~  115 (359)
                      .+.++|..+.+.+.++...+....++++|+|++++  . +                                      +.
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            89999999999998888545677888999887776  1 1                                      23


Q ss_pred             EEEEEccc--cee-eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-------------eeEEeecccc
Q 018248          116 VYVYNFTD--LKL-VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-------------KSKYITAHAS  179 (359)
Q Consensus       116 i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-------------~~~~~~~~~~  179 (359)
                      |.+.|..+  ++. +..+..... ...+.++||++..++  ++..+.+|.+++....             ....+. -..
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~v~V--~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~  331 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCV--AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL  331 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESS-CCCEEECTTSSEEEE--ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred             EEEEeCcccCCceeEEEEecCCC-ceEEEEcCCCCEEEE--eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence            67777766  444 445544333 356899999987433  3666888999777643             122222 234


Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEcCC----------CcEEEEeecCCCCcce---EEEEecCCCCEEEEEcC---
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNTMD----------GSLLQEMRRGAERAEI---YSLAFSSNAQWLAASSD---  243 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~----------~~~~~~~~~~~~~~~i---~~~~~s~~~~~l~~~~~---  243 (359)
                      ....++|+|+|...++...|+. |.+||+.+          .+.+..+..+..++..   ..+.++|||++|+++..   
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk  410 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK  410 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             CcceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence            5688999999944445556777 99999977          5677777763211111   12356899999988753   


Q ss_pred             CCc----------EEEEEccCCC
Q 018248          244 KGT----------VHVFGLKVDS  256 (359)
Q Consensus       244 dg~----------i~iw~~~~~~  256 (359)
                      |+.          -.++|+..++
T Consensus       411 dr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          411 DRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cccccCCCCCCCcceEEEcCCCc
Confidence            332          1788885544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.03  E-value=2.8e-08  Score=83.45  Aligned_cols=229  Identities=7%  Similarity=-0.031  Sum_probs=136.9

Q ss_pred             CCCceEEEEEccCCCEEEEec------CCceEEEEcCCCcceeeeeccc---CCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            5 DPITIHHLALNQDHGCFATGT------ETGFRVYLSDPYKPIMRRDFDR---NPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~------d~~i~iw~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      +-..+..++++++|+++++..      ++.|.+||+++++......+..   .+......+++.++...+.+...+...+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            456899999999998777654      3689999998776443333320   1123346677776555554443210014


Q ss_pred             CeEEEEECCCccEEeeec-cCccee-EEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248           76 NKVMIWDDHENRYLGELS-FRSEVK-NVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      +.|.+||+.+++..+.+. |..... ...+.+++..+.   .++.++.|.              .....++++|+++.++
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLY  210 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEE
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEE
Confidence            899999999888776654 211110 133344444332   344443332              1235688999887655


Q ss_pred             EEecCCCCeeEEEEecC----Ce-----eeE--EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          151 MACPGLLKGQVRVEDYG----TK-----KSK--YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~----~~-----~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      ++..  ....+...+..    ..     ...  ...++......++++++|.++++...++. |.+||..+++.......
T Consensus       211 ~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~~  287 (343)
T 2qe8_A          211 LSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSA-IGVITSADRAYKLLVTD  287 (343)
T ss_dssp             EEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTE-EEEEETTTTEEEEEEEC
T ss_pred             EEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCe-EEEEECCCCCEEEEEEC
Confidence            5542  23344433211    00     000  11234456778999999998888888888 99999856764433332


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                       .....+.+++|.++++++++.+..+.+.+|.
T Consensus       288 -~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          288 -EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             -GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             -CceecCCeeEECCCCcEEEEeCccccccccc
Confidence             1235689999999999888877655444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.00  E-value=1.2e-06  Score=78.63  Aligned_cols=194  Identities=9%  Similarity=0.086  Sum_probs=112.0

Q ss_pred             CCCEEEEec-CCceEEEEc-CCCcceeeeecccCCCCcee--------EEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248           17 DHGCFATGT-ETGFRVYLS-DPYKPIMRRDFDRNPRGGTQ--------LVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~-~~~~~~~~~~~~~~h~~~v~--------~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      ++..+++.. ++.|.-+|. ++++.+....+.  ....+.        .......+..+++.+    .|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~dg~l~alD~~tG  135 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPK--QDASTKAVMCCDVVDRGLAYGAGQIVKKQ----ANGHLLALDAKTG  135 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCC--CCGGGGGGCTTCSCCCCCEEETTEEEEEC----TTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCC--CCccccccccccccccccEEECCEEEEEe----CCCEEEEEECCCC
Confidence            444455555 688999999 898888776653  100000        001112345555555    5799999999999


Q ss_pred             cEEeeeccCc-----ceeE-EEEecceeEEE--e------cCeEEEEEcccceeeeeEeccCCCc---------------
Q 018248           87 RYLGELSFRS-----EVKN-VRLRRDRIVVV--L------NQKVYVYNFTDLKLVDQIETVVNPT---------------  137 (359)
Q Consensus        87 ~~~~~~~~~~-----~v~~-~~~~~~~~~~~--~------d~~i~i~d~~~~~~~~~~~~~~~~~---------------  137 (359)
                      +.+.......     .+.+ .... ++.+++  .      ++.|+.+|.++++.+..+.......               
T Consensus       136 ~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  214 (571)
T 2ad6_A          136 KINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY  214 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             CEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence            9988776322     2221 1122 455555  3      6899999999999988876432110               


Q ss_pred             -----------------------eeeeeecCCCccEEEecCC----------CC----eeEEE-EecCCeeeEEeec--c
Q 018248          138 -----------------------GLCDVSQNAGPMVMACPGL----------LK----GQVRV-EDYGTKKSKYITA--H  177 (359)
Q Consensus       138 -----------------------~~~~~~~~~~~~~l~~~g~----------~d----~~v~~-~~~~~~~~~~~~~--~  177 (359)
                                             ..+++.+....+++.+ +.          .+    +.|.. +..+++.+-.++.  |
T Consensus       215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~-g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~  293 (571)
T 2ad6_A          215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH  293 (571)
T ss_dssp             CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC-CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence                                   1133444444433333 21          11    23444 4445555544432  2


Q ss_pred             cc----cccE---EEEccCCc---EEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          178 AS----RIAS---IAMTLDGR---FVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       178 ~~----~i~~---~~~s~~~~---~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      ..    .+..   +...++|+   .++.++.+|. +.++|..+|+.+..++.
T Consensus       294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             cccccccCCCCEEEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence            11    1111   22234774   6778888998 99999999998877654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=4e-07  Score=71.50  Aligned_cols=184  Identities=13%  Similarity=0.126  Sum_probs=120.2

Q ss_pred             CCCce--eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeE--EEEecceeEEE--ecCeEEEEEcc
Q 018248           49 PRGGT--QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKN--VRLRRDRIVVV--LNQKVYVYNFT  122 (359)
Q Consensus        49 h~~~v--~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~--~d~~i~i~d~~  122 (359)
                      |....  ..+.++  ++.+..+++.. ....|+++|+++++.+..+........  +....+..+++  .++.+.+||..
T Consensus        39 hd~~~ftqGL~~~--~~~LyestG~~-g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           39 HDTKAFTEGFFYR--NGYFYESTGLN-GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             CCTTCEEEEEEEE--TTEEEEEEEET-TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCCCcccceEEEE--CCEEEEECCCC-CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            44444  444544  45444444321 124899999999999999885555543  55555555555  69999999999


Q ss_pred             cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecc--c---ccccEEEEccCCcEEEEE
Q 018248          123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAH--A---SRIASIAMTLDGRFVATA  196 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~--~---~~i~~~~~s~~~~~l~~~  196 (359)
                      +.+.+.++.....   -..++++++.++ .+.|  ++.|.+.+.. .+.+..+...  .   ..++.+.|. +|+..+..
T Consensus       116 t~~~~~ti~~~~e---G~glt~dg~~L~-~SdG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          116 NLRQVRSFNYDGE---GWGLTHNDQYLI-MSDG--TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             TCCEEEEEECSSC---CCCEEECSSCEE-ECCS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             cCcEEEEEECCCC---ceEEecCCCEEE-EECC--CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            9999999976442   345567776533 3323  5667775554 4555555432  1   234557776 77655555


Q ss_pred             eCCCCeEEEEEcCCCcEEEEeecCC----------CCcceEEEEecCCCCEEEEEcC
Q 018248          197 SSKGTLIRVFNTMDGSLLQEMRRGA----------ERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       197 ~~dg~~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                      -.+.. |.+.|.++++.+..+....          ...-.+.++|+|+++.|...+.
T Consensus       189 w~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          189 WQTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            55667 9999999999988876421          1135689999998877666553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.95  E-value=1.2e-06  Score=68.14  Aligned_cols=185  Identities=13%  Similarity=0.166  Sum_probs=119.8

Q ss_pred             CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCccee--EEEEecceeEEE--ecCeEEEEEcccc
Q 018248           49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVK--NVRLRRDRIVVV--LNQKVYVYNFTDL  124 (359)
Q Consensus        49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~--~d~~i~i~d~~~~  124 (359)
                      |......--+.++++.+..+++.. ....|+.+|+.+++.+..+.......  .+.+..+..+.+  .++.+.+||..+.
T Consensus        17 hd~~~ftqGL~~~~~~LyestG~~-g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           17 HDTTAFTEGLFYLRGHLYESTGET-GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             CCTTCCEEEEEEETTEEEEEECCT-TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred             CCCccccccEEEECCEEEEECCCC-CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC
Confidence            554433333334456555554432 34699999999999999988555543  345554444444  7999999999999


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeeccc-----ccccEEEEccCCcEEEEEeC
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHA-----SRIASIAMTLDGRFVATASS  198 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~  198 (359)
                      +.+.++.....   -..++++++.++ ++.|  ++.|.+.+.. .+.+..+.-..     ..++.+.+. +|+..+..-.
T Consensus        96 ~~~~ti~~~~~---Gwglt~dg~~L~-vSdg--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X           96 TPRARFRYPGE---GWALTSDDSHLY-MSDG--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             EEEEEEECSSC---CCEEEECSSCEE-EECS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             cEEEEEeCCCC---ceEEeeCCCEEE-EECC--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence            99999986543   245567776533 3323  5678875554 45555554321     234556664 6775555545


Q ss_pred             CCCeEEEEEcCCCcEEEEeecCC-----------CCcceEEEEecCCCCEEEEEc
Q 018248          199 KGTLIRVFNTMDGSLLQEMRRGA-----------ERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       199 dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      +.. |.+.|.++++.+..+....           ...-.+.++++|+++.|...+
T Consensus       169 s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          169 TSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            667 9999999999988876321           123568999999877665554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.94  E-value=1.1e-06  Score=68.95  Aligned_cols=178  Identities=7%  Similarity=0.018  Sum_probs=116.3

Q ss_pred             eEEEEEccCCCEEEEec-CC--ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            9 IHHLALNQDHGCFATGT-ET--GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ...+.|+ ++.++.+.+ ++  .|+++|+++++......+.    .......+.+.++.+..+..   .++.+.++|..+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----~~~FgeGit~~g~~ly~ltw---~~~~v~v~D~~t  116 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----KRYFGEGISDWKDKIVGLTW---KNGLGFVWNIRN  116 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC----TTCCEEEEEEETTEEEEEES---SSSEEEEEETTT
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC----CccceeEEEEeCCEEEEEEe---eCCEEEEEECcc
Confidence            4788898 666555555 55  7999999998877666652    33334445556777766654   469999999999


Q ss_pred             ccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccC--CCc---eeeeeecCCCccEEEecCCC
Q 018248           86 NRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVV--NPT---GLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        86 ~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .+.+.++.....-..++  +++..++   .++.|.++|..+.+.+..+....  .++   +.+.+. ++ .++... - .
T Consensus       117 ~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~-w-~  190 (262)
T 3nol_A          117 LRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANV-W-Q  190 (262)
T ss_dssp             CCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEE-T-T
T ss_pred             CcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEE-c-c
Confidence            99999998554334444  4555444   45679999999998888876532  122   234554 33 344332 3 3


Q ss_pred             CeeEEE-EecCCeeeEEeecc------------cccccEEEEccCCcEEEEEeCCC
Q 018248          158 KGQVRV-EDYGTKKSKYITAH------------ASRIASIAMTLDGRFVATASSKG  200 (359)
Q Consensus       158 d~~v~~-~~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~dg  200 (359)
                      ++.|.+ +..+++.+..+...            ....+.|+|+|+++.|.+.+..=
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            445555 66666666665431            13458899999988777766543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.93  E-value=1.7e-09  Score=91.70  Aligned_cols=215  Identities=10%  Similarity=0.022  Sum_probs=107.7

Q ss_pred             CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC
Q 018248           17 DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR   95 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~   95 (359)
                      ++..+++++ |+.|+.||..+++.......     +.+....+..++..++..+    .|+.|+.||..+|+.+..+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s----~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDP----NDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECT----TTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeC----CCCEEEEEECCCCceeeeeecc
Confidence            567788888 99999999999988766553     2332222333333333323    5899999999899877665422


Q ss_pred             --ccee-EEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-Ce
Q 018248           96 --SEVK-NVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TK  169 (359)
Q Consensus        96 --~~v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~  169 (359)
                        ..+. +..+..++.+++  .++.|+.||..+|+.+..+..+.    ...++|+++.+++   ++.++.|+.|+.. ++
T Consensus        79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~---~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYL---GRTEYTITMYDTKTRE  151 (369)
T ss_dssp             HHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEE---EEEEEEEECCCSSSSS
T ss_pred             CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEE---EecCCEEEEEECCCCC
Confidence              1111 111113444443  78999999999999888776543    1344565554332   4468888887754 44


Q ss_pred             eeEEeecccccccEEEEccCC---cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE-EEEecCCCCEE----EEE
Q 018248          170 KSKYITAHASRIASIAMTLDG---RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY-SLAFSSNAQWL----AAS  241 (359)
Q Consensus       170 ~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l----~~~  241 (359)
                      .+..+..+.  ....+++++.   ..+++++.+|. |..||..+|+.+.++..   ..++. ...++++|...    +.+
T Consensus       152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~~~v~~~~~~  225 (369)
T 2hz6_A          152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNY---ASPVVAFYVWQREGLRKVMHINVA  225 (369)
T ss_dssp             CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEEC---SSCEEEEEECTTSSCEEECCEEEE
T ss_pred             EEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecC---CCceEEEEEecCCceEeccceeec
Confidence            433332211  1223344432   45677888999 99999999998887763   23443 34556666432    122


Q ss_pred             cCCCcEEEEEccCC
Q 018248          242 SDKGTVHVFGLKVD  255 (359)
Q Consensus       242 ~~dg~i~iw~~~~~  255 (359)
                        ++.++.+|..++
T Consensus       226 --~~~l~~ld~~tG  237 (369)
T 2hz6_A          226 --VETLRYLTFMSG  237 (369)
T ss_dssp             --HHHHHHHHHHHH
T ss_pred             --ccceeeeehhcC
Confidence              334555665443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.93  E-value=1.8e-07  Score=73.46  Aligned_cols=161  Identities=6%  Similarity=-0.046  Sum_probs=112.5

Q ss_pred             cEEeeeccCcc--eeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248           87 RYLGELSFRSE--VKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus        87 ~~~~~~~~~~~--v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      +.+.++.|...  ...+.|+.+..+..  .+|.|+++|+++++.+..+ ... ......+.++++.++.+. . .++.+.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~lt-w-~~~~v~  119 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLT-W-TEGLLF  119 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEE-S-SSCEEE
T ss_pred             EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEE-c-cCCEEE
Confidence            45666665543  47888886544444  6778999999999998887 433 333344667777777664 2 578888


Q ss_pred             EEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc---ceEEEEecCCCCEE
Q 018248          163 VEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA---EIYSLAFSSNAQWL  238 (359)
Q Consensus       163 ~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l  238 (359)
                      +++. +.+.+.++..... -..  +++|++.|+.+..++. |.++|..+.+.+..+....+..   .++.+.|. +|+..
T Consensus       120 V~D~~Tl~~~~ti~~~~e-GwG--Lt~Dg~~L~vSdGs~~-l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGE-GWG--LCYWNGKLVRSDGGTM-LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             EEETTTTEEEEEEECSSC-CCC--EEEETTEEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEECCcCcEEEEEeCCCc-eeE--EecCCCEEEEECCCCE-EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            8665 4577777764322 233  3467888888777888 9999999999988887543322   45677877 78766


Q ss_pred             EEEcCCCcEEEEEccCCC
Q 018248          239 AASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       239 ~~~~~dg~i~iw~~~~~~  256 (359)
                      +..-.+..|.+.|.++++
T Consensus       195 anvw~s~~I~vIDp~TG~  212 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGT  212 (268)
T ss_dssp             EEETTCSEEEEECTTTCB
T ss_pred             EEECCCCeEEEEeCCCCc
Confidence            666577889999999887

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.92  E-value=2.6e-06  Score=70.72  Aligned_cols=237  Identities=12%  Similarity=0.076  Sum_probs=139.1

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecc--------cC--------CCCceeEEEEeccCCEEEEEecC
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFD--------RN--------PRGGTQLVSMLFRSNIICLVNSG   71 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~--------~~--------h~~~v~~~~~~~~~~~~~~~~~~   71 (359)
                      ..+++|+++|+++.++. ++.|..|+.+..+........        .+        .......+++.++...+.++.  
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d--   98 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD--   98 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE--
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE--
Confidence            46788999999777777 889999987754332111100        00        012345566655334455554  


Q ss_pred             CCCCCeEEEEECCCccEEeeec--c---CcceeEEEEec-ceeEEEe--------------------cCeEEEEEcccce
Q 018248           72 PHQSNKVMIWDDHENRYLGELS--F---RSEVKNVRLRR-DRIVVVL--------------------NQKVYVYNFTDLK  125 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~~~~--~---~~~v~~~~~~~-~~~~~~~--------------------d~~i~i~d~~~~~  125 (359)
                        ..+.|..+|..+++......  .   ......+++.+ +|.+.+.                    ++.|..+|..+++
T Consensus        99 --~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           99 --CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             --TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             --CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence              23558888876553221111  1   13467899999 8876662                    1568888876665


Q ss_pred             eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeecccccccEEEEccCCcEEEEEeC----
Q 018248          126 LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASRIASIAMTLDGRFVATASS----  198 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----  198 (359)
                      ........ .....++++++++.++++-.  ..+.|.+++..+.   ....+....+ ...+++.++|++.++...    
T Consensus       177 ~~~~~~~~-~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          177 TTLLLKEL-HVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             EEEEEEEE-SCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             EEEeccCC-ccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence            43332221 22345888998876555532  3567877665531   2222222223 678999999986666544    


Q ss_pred             ------CCCeEEEEEcCCCcEEEEeecCCC--CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          199 ------KGTLIRVFNTMDGSLLQEMRRGAE--RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       199 ------dg~~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                            .+. |..+|. .++.+..+.....  ...+..+++ .+++++++....+.|.++++....
T Consensus       253 ~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          253 NMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             STTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             cccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence                  456 888885 5777777654211  234666766 466666666677889999987654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.92  E-value=1.6e-06  Score=79.27  Aligned_cols=192  Identities=13%  Similarity=0.097  Sum_probs=112.0

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCC------CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEee
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR------GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGE   91 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~   91 (359)
                      ..+++++ ++.|..+|.++++.+..........      ...........++.+++.+    .|+.|..+|..+|+.+..
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT----LDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC----TTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc----CCCEEEEEECCCCCEeee
Confidence            3455555 8899999999998887765420000      0000001112345555555    579999999999999887


Q ss_pred             eccC-----cceeEEEEecceeEEE--e------cCeEEEEEcccceeeeeEeccC-CC---------------------
Q 018248           92 LSFR-----SEVKNVRLRRDRIVVV--L------NQKVYVYNFTDLKLVDQIETVV-NP---------------------  136 (359)
Q Consensus        92 ~~~~-----~~v~~~~~~~~~~~~~--~------d~~i~i~d~~~~~~~~~~~~~~-~~---------------------  136 (359)
                      +...     ..+.+.-.-.++.+++  .      ++.|+.+|.++++.+..+.... .+                     
T Consensus       143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            7632     1122111112555555  2      5899999999999988876421 10                     


Q ss_pred             ---------ceeeeeecCCCccEEEecCCCCe-------------------eEEEEe-cCCeeeEEeec--cc-------
Q 018248          137 ---------TGLCDVSQNAGPMVMACPGLLKG-------------------QVRVED-YGTKKSKYITA--HA-------  178 (359)
Q Consensus       137 ---------~~~~~~~~~~~~~~l~~~g~~d~-------------------~v~~~~-~~~~~~~~~~~--~~-------  178 (359)
                               ....++.+..+.+++.+   .++                   .|...+ .+++.+-.++.  |.       
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGT---GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeC---CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                     01235555555433332   333                   255444 44555544432  22       


Q ss_pred             ccccEEEEccCCc---EEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          179 SRIASIAMTLDGR---FVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       179 ~~i~~~~~s~~~~---~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                      .+.....+..+|+   .++.++.+|. ++++|..+|+.+...+
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK  341 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence            2222223334675   6888999999 9999999999885544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.91  E-value=7.8e-07  Score=69.86  Aligned_cols=182  Identities=6%  Similarity=0.018  Sum_probs=119.2

Q ss_pred             CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeE--EEEecceeEEE--ecCeEEEEEcccc
Q 018248           49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKN--VRLRRDRIVVV--LNQKVYVYNFTDL  124 (359)
Q Consensus        49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~--~d~~i~i~d~~~~  124 (359)
                      |......-.+.++++.+..+++   .++.|+++|+++++.+..+ .......  +++..+..+++  .++.+.+||..+.
T Consensus        51 hd~~~ftqGL~~~~~~Ly~stG---~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           51 HATNAFTQGLVFHQGHFFESTG---HQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             CCTTCCEEEEEEETTEEEEEET---TTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             CCCccccceEEEECCEEEEEcC---CCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            4444433334445665555554   4588999999999988887 5555544  56655555555  6999999999999


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecc--cc---cccEEEEccCCcEEEEEeC
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAH--AS---RIASIAMTLDGRFVATASS  198 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~--~~---~i~~~~~s~~~~~l~~~~~  198 (359)
                      +.+.++.....   -..++++++.++ ++ . .++.|.+.+.. .+.+..+...  ..   .++.+.|. +|+..+..-.
T Consensus       127 ~~~~ti~~~~e---GwGLt~Dg~~L~-vS-d-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~  199 (268)
T 3nok_A          127 QRERTTRYSGE---GWGLCYWNGKLV-RS-D-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH  199 (268)
T ss_dssp             EEEEEEECSSC---CCCEEEETTEEE-EE-C-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             cEEEEEeCCCc---eeEEecCCCEEE-EE-C-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence            99999986433   245557776533 33 2 26678875544 4555555432  22   34567776 7765555545


Q ss_pred             CCCeEEEEEcCCCcEEEEeecCC-----------CCcceEEEEecCCCCEEEEEc
Q 018248          199 KGTLIRVFNTMDGSLLQEMRRGA-----------ERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       199 dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      +.. |.+.|.++++.+..+....           ...-.+.|+++|+++.|+..+
T Consensus       200 s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          200 SSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            667 9999999999988876420           113568999999766554443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.90  E-value=2e-05  Score=73.89  Aligned_cols=235  Identities=9%  Similarity=0.081  Sum_probs=139.9

Q ss_pred             eEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248            9 IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY   88 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~   88 (359)
                      |.++...++|.+.+...++.+..|+..+.+.......  .+...+..+....++ .+.+++    .++.+..||..+++.
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~--~~~~~i~~i~~d~~g-~lwigt----~~~Gl~~~~~~~~~~  247 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPI--LGTKQIQAILQQSPT-RIWVAT----EGAGLFLINPKTKEI  247 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC------CCCEEEEEEEETT-EEEEEE----BSSCEEEEETTTTEE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCC--CCCCeeEEEEEcCCC-CEEEEE----CCCCeEEEeCCCCeE
Confidence            8888888888766644366789999876443211111  123445544443332 333333    235688999777654


Q ss_pred             Eeeec--------cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec-------cCCCceeeeeecCCCccEEE
Q 018248           89 LGELS--------FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET-------VVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        89 ~~~~~--------~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~  152 (359)
                      .....        ....|.++...++|.+.+ .++.|.+||..+++.......       ....+..+....++. +++.
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWig  326 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLG  326 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEE
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEE
Confidence            33221        135689999998888777 556899999876654332211       123344444444332 3333


Q ss_pred             ecCCCCeeEEEEecCCeeeEEeec-------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec------
Q 018248          153 CPGLLKGQVRVEDYGTKKSKYITA-------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR------  219 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~------  219 (359)
                      +   .++-|..++........+..       ....|.++...++|.+ ..|+.++. |..||..+++...-...      
T Consensus       327 t---~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~~  401 (795)
T 4a2l_A          327 T---YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGG-LNLYNPITQRFTSYTLQEDESAR  401 (795)
T ss_dssp             E---SSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSC-EEEECTTTCCEEEECCC------
T ss_pred             E---CCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCC-eEEEcCCCCcEEEEecCCCCccc
Confidence            2   45556666554444433321       2346889998888874 45777767 99999877654432211      


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ......|.++...++|+.|..|+.++-|..||.++++
T Consensus       402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            0123579999998899855566776669999988765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.89  E-value=1.3e-05  Score=72.03  Aligned_cols=196  Identities=10%  Similarity=0.059  Sum_probs=111.8

Q ss_pred             CCCEEEEec-CCceEEEEc-CCCcceeeeecccCCC--------CceeEEEEeccCCE----EEEEecCCCCCCeEEEEE
Q 018248           17 DHGCFATGT-ETGFRVYLS-DPYKPIMRRDFDRNPR--------GGTQLVSMLFRSNI----ICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~-~~~~~~~~~~~~~~h~--------~~v~~~~~~~~~~~----~~~~~~~~~~d~~i~iwd   82 (359)
                      ++..+++.. ++.|.-+|. ++++.+..........        .....+.+.+.+..    +++.+    .|+.|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t----~dg~l~AlD  137 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ----LDGNVAALN  137 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC----TTSEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc----CCCEEEEEE
Confidence            344445555 688999999 8888887766530000        00111233223333    55554    579999999


Q ss_pred             CCCccEEeeeccCc-----ceeEEEEecceeEEE-e-------cCeEEEEEcccceeeeeEeccCCCc------------
Q 018248           83 DHENRYLGELSFRS-----EVKNVRLRRDRIVVV-L-------NQKVYVYNFTDLKLVDQIETVVNPT------------  137 (359)
Q Consensus        83 ~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~~------------  137 (359)
                      ..+|+.+.......     .+.+--.-.++.+++ .       ++.|+.+|.++++.+..+.......            
T Consensus       138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          138 AETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            99999988765222     222211112556665 2       6899999999999988876432210            


Q ss_pred             --------------------------eeeeeecCCCccEEEecCCC--------------CeeEEE-EecCCeeeEEeec
Q 018248          138 --------------------------GLCDVSQNAGPMVMACPGLL--------------KGQVRV-EDYGTKKSKYITA  176 (359)
Q Consensus       138 --------------------------~~~~~~~~~~~~~l~~~g~~--------------d~~v~~-~~~~~~~~~~~~~  176 (359)
                                                ...++.+....+++.+ +..              .+.|.. +..+++.+-.++.
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~-g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~  296 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK  296 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC-CCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence                                      0123334444434333 321              124444 4445555544432


Q ss_pred             --ccc-------cccEEEEc-cCC---cEEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          177 --HAS-------RIASIAMT-LDG---RFVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       177 --~~~-------~i~~~~~s-~~~---~~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                        |..       ...-+... .+|   +.++.++.+|. +.++|.++|+.+....
T Consensus       297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (599)
T ss_dssp             STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence              211       11112222 467   56778889999 9999999999987765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=1.7e-06  Score=79.19  Aligned_cols=232  Identities=11%  Similarity=0.067  Sum_probs=140.1

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCC--CceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEeee
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR--GGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGEL   92 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~   92 (359)
                      +..+++++ |+.|..+|.++++........ .+.  ..+...-.. ..+.+++...+..  .++.|..+|..+|+.+..+
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTT-DPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECS-CTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccC-CCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            45677777 999999999999988776652 000  111110001 2344444332210  2589999999999998877


Q ss_pred             cc-C-cc------------------------------eeEEEEecceeEEE---ecC-------------------eEEE
Q 018248           93 SF-R-SE------------------------------VKNVRLRRDRIVVV---LNQ-------------------KVYV  118 (359)
Q Consensus        93 ~~-~-~~------------------------------v~~~~~~~~~~~~~---~d~-------------------~i~i  118 (359)
                      .. . .+                              ...+++.|+...++   .++                   .|..
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            52 1 00                              12367777544443   333                   4999


Q ss_pred             EEcccceeeeeEeccCCC---------ceeeeeecCCCcc-EEEecCCCCeeEEEEec-CCeeeEEeeccc---------
Q 018248          119 YNFTDLKLVDQIETVVNP---------TGLCDVSQNAGPM-VMACPGLLKGQVRVEDY-GTKKSKYITAHA---------  178 (359)
Q Consensus       119 ~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~l~~~g~~d~~v~~~~~-~~~~~~~~~~~~---------  178 (359)
                      +|..+++.+..++.....         .....+..+++.. +++. ++.+|.+++.+. +++.+.......         
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~-~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~  353 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQ-APKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE-CCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEE-ECCCCEEEEEECCCCCEecccccccccccccccc
Confidence            999999998888753221         1222233355422 2443 667999998554 455442221110         


Q ss_pred             ---c------------------------cccEEEEccCCcEEEEEe----------------------------------
Q 018248          179 ---S------------------------RIASIAMTLDGRFVATAS----------------------------------  197 (359)
Q Consensus       179 ---~------------------------~i~~~~~s~~~~~l~~~~----------------------------------  197 (359)
                         .                        .-..++++|+...++...                                  
T Consensus       354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence               0                        011267888766655421                                  


Q ss_pred             --CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          198 --SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       198 --~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                        .+|. |..||+.+++.+-+...+   .+.....+...+.+++.++.|+.++.||.++++
T Consensus       434 ~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          434 AVVSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             GGCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence              2377 999999999988777642   233333444567888899999999999999987

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.84  E-value=1.5e-05  Score=65.51  Aligned_cols=225  Identities=9%  Similarity=0.037  Sum_probs=130.6

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      .....++|+++|+++++.. ++.|..|+.+.. .......    ......+++.++++. +++..+. ....|..++..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~----~~~p~gia~~~dG~l-~vad~~~-~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV----EGKVSGLAFTSNGDL-VATGWNA-DSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC----SSEEEEEEECTTSCE-EEEEECT-TSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC----CCCceeEEEcCCCcE-EEEeccC-CcceEEEEcCCC
Confidence            4567899999999777776 788988887753 2222222    345667778777774 3333221 113577778777


Q ss_pred             ccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEccccee-eeeEec-------cCCCceeeeeecCCCccEEE
Q 018248           86 NRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL-VDQIET-------VVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        86 ~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~  152 (359)
                      ++......  .......++..+++..++   .++.|+++|...++. +.....       .........++++++.++++
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~  184 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVS  184 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEE
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEE
Confidence            76543332  122234455555555454   468899999765421 111110       01101112237777665555


Q ss_pred             ecCCCCeeEEEEecCC--e--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE--EeecCCCCcce
Q 018248          153 CPGLLKGQVRVEDYGT--K--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ--EMRRGAERAEI  226 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~--~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~--~~~~~~~~~~i  226 (359)
                      -  ...+.|..++.+.  .  ....+.. ......++++++|++.++....+. |.++|.. ++...  .+..  .....
T Consensus       185 d--~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~--~~~~p  257 (306)
T 2p4o_A          185 N--TEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQ--GVIGS  257 (306)
T ss_dssp             E--TTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGG--TCTTE
T ss_pred             e--CCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeeccc--ccCCc
Confidence            4  3466787766543  1  1122211 235678999999987666666777 9999964 66533  2332  22468


Q ss_pred             EEEEec---CCCCEEEEEcCCC
Q 018248          227 YSLAFS---SNAQWLAASSDKG  245 (359)
Q Consensus       227 ~~~~~s---~~~~~l~~~~~dg  245 (359)
                      ++++|.   |+++.|+.++..+
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEEecccCCCCEEEEECCCC
Confidence            999998   8887776665443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.82  E-value=5.3e-06  Score=64.62  Aligned_cols=180  Identities=9%  Similarity=0.048  Sum_probs=115.4

Q ss_pred             CceEEEEEccCCCEEEEec-C--CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            7 ITIHHLALNQDHGCFATGT-E--TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d--~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      .-...+.|++ +.++.+.+ +  +.|+.+|+++++......+.    .......+...++.+..+..   .++.+.+||.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~~~fgeGi~~~~~~ly~ltw---~~~~v~v~D~   92 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP----PPYFGAGIVAWRDRLIQLTW---RNHEGFVYDL   92 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC----TTCCEEEEEEETTEEEEEES---SSSEEEEEET
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC----CCcceeEEEEeCCEEEEEEe---eCCEEEEEEC
Confidence            3466889986 45445544 4  47999999998887666663    33333444455666666654   4699999999


Q ss_pred             CCccEEeeeccCcceeEEEEecceeEE-E--ecCeEEEEEcccceeeeeEeccCC-----CceeeeeecCCCccEEEecC
Q 018248           84 HENRYLGELSFRSEVKNVRLRRDRIVV-V--LNQKVYVYNFTDLKLVDQIETVVN-----PTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g  155 (359)
                      .+.+.+.++.....-..++.  ++..+ +  .++.|.++|..+.+.+..+.....     ..+.+.+.  +..++... -
T Consensus        93 ~tl~~~~ti~~~~~Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanv-w  167 (243)
T 3mbr_X           93 ATLTPRARFRYPGEGWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANV-W  167 (243)
T ss_dssp             TTTEEEEEEECSSCCCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEE-T
T ss_pred             CcCcEEEEEeCCCCceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEE-C
Confidence            99999999986554455554  44333 3  677899999999988888865332     12223332  33344333 3


Q ss_pred             CCCeeEEEEecCCeeeEEeecc-------------cccccEEEEccCCcEEEEEeCC
Q 018248          156 LLKGQVRVEDYGTKKSKYITAH-------------ASRIASIAMTLDGRFVATASSK  199 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~d  199 (359)
                      ..+..++|+..+++.+..+...             ..-.+.|+++|+++.|.+.+..
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            3344444466677766665421             1356889999987766666544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=2.9e-05  Score=66.11  Aligned_cols=234  Identities=7%  Similarity=0.001  Sum_probs=141.8

Q ss_pred             EEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE
Q 018248           10 HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL   89 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~   89 (359)
                      .|.+..+ ..+|+.+....|+.++++.........    .......+++.+..+.+.++..   ..+.|..+++..+...
T Consensus        80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~---~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDV---TLDRILRANLNGSNVE  151 (386)
T ss_dssp             CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC----SCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCEE
T ss_pred             eECCccc-cceeEeecCccceeeccCCCcEEEEec----CCCccEEEEEecCCCeEEEEeC---CCCcEEEEecCCCCcE
Confidence            3444444 345666666778888887644332222    1344566777777777776654   3589999998766544


Q ss_pred             eeec-cCcceeEEEEecc-eeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248           90 GELS-FRSEVKNVRLRRD-RIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE  164 (359)
Q Consensus        90 ~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~  164 (359)
                      ..+. .......+++.+. +.+.+   ..+.|.+.++........+.........+++.|.+..++++-.+ ..+.|...
T Consensus       152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~-~~~~I~r~  230 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPRIEAS  230 (386)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS-SSCEEEEE
T ss_pred             EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC-CCCEEEEE
Confidence            4333 2345677888864 44333   55788888875433222232222344668888877765555422 23677777


Q ss_pred             ecCCeeeEEee-cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248          165 DYGTKKSKYIT-AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       165 ~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      +.++.....+. ..-...+.|+++|++..|..+.. .+. |..+|+........+..  .......+++ ..+.++++-.
T Consensus       231 ~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~--~~~~P~giav-~~~~ly~td~  306 (386)
T 3v65_B          231 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLYWTDW  306 (386)
T ss_dssp             ETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSCEEEECS--SCSSEEEEEE-ETTEEEEEET
T ss_pred             eCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCeeEEEEEC--CCCCceEEEE-ECCEEEEeeC
Confidence            77776555443 23345689999987776666654 455 99998754333323332  2345678888 4555666666


Q ss_pred             CCCcEEEEEccCCC
Q 018248          243 DKGTVHVFGLKVDS  256 (359)
Q Consensus       243 ~dg~i~iw~~~~~~  256 (359)
                      ..+.|..++..+++
T Consensus       307 ~~~~V~~~~~~~G~  320 (386)
T 3v65_B          307 HTKSINSANKFTGK  320 (386)
T ss_dssp             TTTEEEEEETTTCC
T ss_pred             CCCeEEEEECCCCc
Confidence            77888888855554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.78  E-value=1.6e-06  Score=77.73  Aligned_cols=232  Identities=8%  Similarity=-0.011  Sum_probs=136.8

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCC--CceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEeee
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR--GGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGEL   92 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~   92 (359)
                      +..+++++ |+.+..+|..+++......+. .+.  ..+...-.. .++.+++.+.+..  .++.|..+|..+|+.+.++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            45666676 999999999999888776653 110  011110011 2344444432100  1689999999999998877


Q ss_pred             ccCcce---------------------------------------eEEEEecce-eEEE--ec----------------C
Q 018248           93 SFRSEV---------------------------------------KNVRLRRDR-IVVV--LN----------------Q  114 (359)
Q Consensus        93 ~~~~~v---------------------------------------~~~~~~~~~-~~~~--~d----------------~  114 (359)
                      ......                                       ..+++.++. .+++  .+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            622111                                       124555543 3333  21                2


Q ss_pred             eEEEEEcccceeeeeEeccCCC------cee---eeeecCCCc-cEEEecCCCCeeEEEEe-cCCeeeEEeeccc-----
Q 018248          115 KVYVYNFTDLKLVDQIETVVNP------TGL---CDVSQNAGP-MVMACPGLLKGQVRVED-YGTKKSKYITAHA-----  178 (359)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~-~~l~~~g~~d~~v~~~~-~~~~~~~~~~~~~-----  178 (359)
                      .|..+|..+++.+..++.....      ...   .....+++. .+++. +..+|.+++.+ .+++.+.......     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~-~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSH-IDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEE-ECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEE-eCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            6999999999998887653211      111   122234431 12333 55688888855 4555544332111     


Q ss_pred             --------ccc--------------------------cEEEEccCCcEEEEEe---------------------------
Q 018248          179 --------SRI--------------------------ASIAMTLDGRFVATAS---------------------------  197 (359)
Q Consensus       179 --------~~i--------------------------~~~~~s~~~~~l~~~~---------------------------  197 (359)
                              .++                          ..++++|+..++++.+                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    011                          2467888877766653                           


Q ss_pred             ----------CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          198 ----------SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       198 ----------~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                                .+|. |..||..+++.+-++...   ..+....+...+..++.++.||.|+.||.++++
T Consensus       432 ~~~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EECTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccCccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence                      2467 999999999988877642   222222233346677779999999999999987

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.78  E-value=1.1e-05  Score=72.39  Aligned_cols=238  Identities=7%  Similarity=0.026  Sum_probs=137.0

Q ss_pred             EEEccCCCE----EEEec-CCceEEEEcCCCcceeeeecccCCC--CceeEEEEeccCCEEEEEecCCC--CCCeEEEEE
Q 018248           12 LALNQDHGC----FATGT-ETGFRVYLSDPYKPIMRRDFDRNPR--GGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWD   82 (359)
Q Consensus        12 ~~~s~~g~~----l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd   82 (359)
                      ++++|.+..    +++++ |+.+..+|.++++.+....+. .+.  ..+...-.. ..+.+++.+.+..  .++.|..+|
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEE
Confidence            445444434    77777 999999999999888776653 110  011110011 1334443332100  268999999


Q ss_pred             CCCccEEeeeccCcce---------------------------------------eEEEEecceeEEE---ec-------
Q 018248           83 DHENRYLGELSFRSEV---------------------------------------KNVRLRRDRIVVV---LN-------  113 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v---------------------------------------~~~~~~~~~~~~~---~d-------  113 (359)
                      .++|+.+..+....+.                                       ..+++.+....+.   .+       
T Consensus       189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~  268 (599)
T 1w6s_A          189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET  268 (599)
T ss_dssp             TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred             CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence            9999998877622211                                       1234555443333   22       


Q ss_pred             ---------CeEEEEEcccceeeeeEeccCCCc---------eeeeee-cCCCc-cEEEecCCCCeeEEEEe-cCCeeeE
Q 018248          114 ---------QKVYVYNFTDLKLVDQIETVVNPT---------GLCDVS-QNAGP-MVMACPGLLKGQVRVED-YGTKKSK  172 (359)
Q Consensus       114 ---------~~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~-~~l~~~g~~d~~v~~~~-~~~~~~~  172 (359)
                               +.|..+|..+++.+..++......         ...... .+++. .+++. ++.+|.+++.+ .+++.+.
T Consensus       269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~-~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTH-PDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEE-ECTTSEEEEEETTTCCEEE
T ss_pred             ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEE-ECCCcEEEEEECCCCCEee
Confidence                     389999999999988887643321         111221 34432 22333 55788888854 4555544


Q ss_pred             Eeeccc-------------cc--------------------------ccEEEEccCCcEEEEEe----------------
Q 018248          173 YITAHA-------------SR--------------------------IASIAMTLDGRFVATAS----------------  197 (359)
Q Consensus       173 ~~~~~~-------------~~--------------------------i~~~~~s~~~~~l~~~~----------------  197 (359)
                      ......             .+                          -..++++|+..++++..                
T Consensus       348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~  427 (599)
T 1w6s_A          348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA  427 (599)
T ss_dssp             EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence            332110             00                          12456777766554421                


Q ss_pred             -----------------------CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          198 -----------------------SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       198 -----------------------~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                                             ..|. |..||+.+++.+-+.+..   .+...-.+...+.+++.++.|+.++.||.++
T Consensus       428 g~~~~g~~~~~~~~p~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~t  503 (599)
T 1w6s_A          428 GQFFVGATLNMYPGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDT  503 (599)
T ss_dssp             TSCCCCEEEEEEECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             CcceecccceeccCCcCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCC
Confidence                                   3467 899999999988777532   1221111222566777899999999999999


Q ss_pred             CC
Q 018248          255 DS  256 (359)
Q Consensus       255 ~~  256 (359)
                      ++
T Consensus       504 G~  505 (599)
T 1w6s_A          504 GD  505 (599)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.77  E-value=5.1e-05  Score=63.58  Aligned_cols=237  Identities=7%  Similarity=-0.013  Sum_probs=143.1

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      +...|.+..+ ..+|+.+....|+..+++.....  ..+.  .......+++.+..+.+.++..   ..+.|..+++..+
T Consensus        34 d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~--~~~~--~~~~~~~l~~d~~~~~ly~~D~---~~~~I~r~~~~g~  105 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLLN--NLENAIALDFHHRRELVFWSDV---TLDRILRANLNGS  105 (349)
T ss_dssp             TSSCEEESSS-CCEEEEECBSCEEEECTTSCCEE--EEEC--SCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred             CCCccccccc-CceeEeecccceEEEeCCCCeeE--Eeec--CCCceEEEEEeccccEEEEEec---cCCceEEEecCCC
Confidence            3445666556 34566666666888887754332  2221  1234566777777777777654   3588999998766


Q ss_pred             cEEeeec-cCcceeEEEEecc-eeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248           87 RYLGELS-FRSEVKNVRLRRD-RIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        87 ~~~~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      .....+. .......+++.+. +.+.+   ..+.|.+.++........+.........+++.|.+..++++-.+ ..+.|
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~-~~~~I  184 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPRI  184 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS-SSCEE
T ss_pred             CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC-CCCEE
Confidence            5433333 2345678899874 44433   56789999985433222222222344678888877665555422 23778


Q ss_pred             EEEecCCeeeEEeec-ccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248          162 RVEDYGTKKSKYITA-HASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      ...+.++.....+.. .-...+.++++|++..|..+.. .+. |..+|+........+..  .......+++ .++.+++
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~~~~~~~~--~~~~P~giav-~~~~ly~  260 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLYW  260 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECS--SCSSEEEEEE-ETTEEEE
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCceEEEEeC--CCCCceEEEE-ECCEEEE
Confidence            877777765555432 3345689999987776666654 455 99999764333322322  2345678888 3555666


Q ss_pred             EEcCCCcEEEEEccCCC
Q 018248          240 ASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       240 ~~~~dg~i~iw~~~~~~  256 (359)
                      +-...+.|..++..+++
T Consensus       261 td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          261 TDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EETTTTEEEEEETTTCC
T ss_pred             ecCCCCeEEEEEccCCC
Confidence            66667778888755554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.76  E-value=1.9e-05  Score=65.46  Aligned_cols=180  Identities=10%  Similarity=0.040  Sum_probs=104.5

Q ss_pred             eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--------------------cCcceeEEEEec-ceeEEE-
Q 018248           54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--------------------FRSEVKNVRLRR-DRIVVV-  111 (359)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~~~-  111 (359)
                      ..+++.++++.+.+..    .++.|..|+..+++......                    ....+..+++.+ ++.+++ 
T Consensus        22 ~~i~~d~~g~~l~v~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSV----QDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             CCEECCTTCSSEEEEC----TTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             eEEEEcCCCCEEEEEc----CCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            4455666655444443    46889999876654332110                    113578899997 776665 


Q ss_pred             -ecCeEEEEEcccceeeeeEec-----cCCCceeeeeec-CCCccEEEecC---------------CCCeeEEEEecCCe
Q 018248          112 -LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVSQ-NAGPMVMACPG---------------LLKGQVRVEDYGTK  169 (359)
Q Consensus       112 -~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~l~~~g---------------~~d~~v~~~~~~~~  169 (359)
                       ..+.|..+|..+++. ..+..     .......+++.+ ++ .++++..+               ..++.|..++....
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence             455688888765532 22211     112234567777 55 34444322               12366777776544


Q ss_pred             eeEEeecccccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248          170 KSKYITAHASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       170 ~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                      ....+...-.....++++|+++.|+.+ ...+. |.+|++....  ....+..  ..+ ...+++.++|++.++...
T Consensus       176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred             EEEEeccCCccCcceEECCCCCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecC
Confidence            444333333456789999999876666 45567 9999986421  1222221  123 788999999987766544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.71  E-value=7.5e-05  Score=67.04  Aligned_cols=195  Identities=9%  Similarity=0.071  Sum_probs=110.2

Q ss_pred             CCCEEEEecCCceEEEEcCCCcceeeeecccCCCCc------eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           17 DHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGG------TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        17 ~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      ++..++++.++.|.-+|.++++.+............      ...+.  ..++.+++.+    .++.|.-+|..+|+.+.
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a--~~~~~v~~~t----~dg~l~AlD~~TG~~~W  141 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA--IYGDKVFFGT----LDASVVALNKNTGKVVW  141 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE--EETTEEEEEE----TTTEEEEEESSSCCEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE--EECCEEEEEe----CCCEEEEEECCCCCEEe
Confidence            444444444455899999999888777653110000      01111  2345566655    57999999999999988


Q ss_pred             eeccCc-----cee-EEEEecc---e--eEEE-e-------cCeEEEEEcccceeeeeEeccCCCc--------------
Q 018248           91 ELSFRS-----EVK-NVRLRRD---R--IVVV-L-------NQKVYVYNFTDLKLVDQIETVVNPT--------------  137 (359)
Q Consensus        91 ~~~~~~-----~v~-~~~~~~~---~--~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~~--------------  137 (359)
                      ......     .+. ......+   +  .+++ .       ++.|+.+|..+++.+.........+              
T Consensus       142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~  221 (582)
T 1flg_A          142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV  221 (582)
T ss_dssp             EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred             eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence            776221     121 1112222   2  3444 2       6899999999999887654321000              


Q ss_pred             ---------------------------eeeeeecCCCccEEEecCC-----------C-------C----eeEEEEec-C
Q 018248          138 ---------------------------GLCDVSQNAGPMVMACPGL-----------L-------K----GQVRVEDY-G  167 (359)
Q Consensus       138 ---------------------------~~~~~~~~~~~~~l~~~g~-----------~-------d----~~v~~~~~-~  167 (359)
                                                 ...++.+....+++.+ +.           .       |    +.|..++. +
T Consensus       222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~-gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGA-GNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEE-CCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             ccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeC-CCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence                                       1133444445444444 21           0       1    45555554 4


Q ss_pred             CeeeEEeec--ccc----cccE-EEEc---cCCc---EEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          168 TKKSKYITA--HAS----RIAS-IAMT---LDGR---FVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       168 ~~~~~~~~~--~~~----~i~~-~~~s---~~~~---~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      ++.+-.++.  |..    .+.. +.+.   .+|+   .++.++.+|. ++++|..+|+.+..+..
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce-EEEEECCCCCEeccccc
Confidence            555544432  221    1111 2222   4674   7888999999 99999999999877654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.70  E-value=7.9e-05  Score=61.52  Aligned_cols=226  Identities=11%  Similarity=-0.030  Sum_probs=137.6

Q ss_pred             EEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC----ccEEeeec-c
Q 018248           20 CFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE----NRYLGELS-F   94 (359)
Q Consensus        20 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~----~~~~~~~~-~   94 (359)
                      +|+.+....|+..++++.+......    .......+++.+..+.+.++..   ..+.|..+++..    ......+. .
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~---~~~~I~~~~~~g~~~~~~~~~~~~~~   75 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRD   75 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSS
T ss_pred             EEEEECCCeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEEC---CCCcEEEEECCCCCCCcccEEEEeCC
Confidence            5666777789999998755432221    1345566777777777777664   358999999775    22222222 2


Q ss_pred             CcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee
Q 018248           95 RSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK  170 (359)
Q Consensus        95 ~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~  170 (359)
                      -.....+++.+ .+.+.+   ..+.|.++++........+.........+++.|.+..++++-.+ ..+.|...+.++..
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~~  154 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD  154 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCC
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCCC
Confidence            24567889886 344433   56799999985443322333233345678888877765555422 23677777777765


Q ss_pred             eEEee-cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEee-cCCCCcceEEEEecCCCCEEEEEcCCCcE
Q 018248          171 SKYIT-AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMR-RGAERAEIYSLAFSSNAQWLAASSDKGTV  247 (359)
Q Consensus       171 ~~~~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  247 (359)
                      .+.+. ..-...+.++++|++..|..+.. .+. |..+|+.... ...+. ..........+++. .+.++++-...+.|
T Consensus       155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V  231 (316)
T 1ijq_A          155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  231 (316)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             eEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence            55443 23346789999998777766654 456 9999986433 23332 11122356788885 45666666677889


Q ss_pred             EEEEccCCC
Q 018248          248 HVFGLKVDS  256 (359)
Q Consensus       248 ~iw~~~~~~  256 (359)
                      ..++..+++
T Consensus       232 ~~~~~~~g~  240 (316)
T 1ijq_A          232 FSANRLTGS  240 (316)
T ss_dssp             EEEETTTCC
T ss_pred             EEEeCCCCc
Confidence            888876665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.69  E-value=0.00011  Score=62.82  Aligned_cols=228  Identities=11%  Similarity=-0.036  Sum_probs=139.5

Q ss_pred             CEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec-
Q 018248           19 GCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS-   93 (359)
Q Consensus        19 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-   93 (359)
                      .+|+.+....|+..+++.........    ....+..+++.+..+.+.++..   ..+.|..+++...    .....+. 
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~---~~~~I~~~~~~g~~~~~~~~~~~~~  156 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISR  156 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEET---TTTEEEEEEC------CCCEEEECS
T ss_pred             ceeEEeccceeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEec---CCCeEEEEEcccCCCCCcceEEEeC
Confidence            35666667788888888654432221    2456677788877777777764   3588998987652    2222222 


Q ss_pred             cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe
Q 018248           94 FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK  169 (359)
Q Consensus        94 ~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~  169 (359)
                      .......+++.+ .+.+.+   ..+.|.+.++........+.........+++.|.+..++++-.+ ..+.|...+.++.
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~  235 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV  235 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSC
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCC
Confidence            335677888887 444443   56789999986544433333333345678888877665554422 2467777777776


Q ss_pred             eeEEee-cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcE
Q 018248          170 KSKYIT-AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV  247 (359)
Q Consensus       170 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  247 (359)
                      ....+. ..-...+.|+++|++..|+.+.. .+. |..+|+....................+++. .+.++++-...+.|
T Consensus       236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V  313 (400)
T 3p5b_L          236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  313 (400)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred             ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence            555543 23356789999988877776654 455 999997544333222221122355677773 34556666677788


Q ss_pred             EEEEccCCC
Q 018248          248 HVFGLKVDS  256 (359)
Q Consensus       248 ~iw~~~~~~  256 (359)
                      ..++..+++
T Consensus       314 ~~~~~~~G~  322 (400)
T 3p5b_L          314 FSANRLTGS  322 (400)
T ss_dssp             EEEESSSCC
T ss_pred             EEEEcCCCC
Confidence            888876665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=0.00013  Score=68.35  Aligned_cols=237  Identities=9%  Similarity=0.039  Sum_probs=134.0

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeee--------cc---cCCCCceeEEEEeccCCEEEEEecCCCC
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRD--------FD---RNPRGGTQLVSMLFRSNIICLVNSGPHQ   74 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~--------~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~~   74 (359)
                      ...|.++...++|.+.+....+.|.+++..+........        ..   .-....|..+..  +.+..+.++.   .
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~--D~~g~lWigt---~  331 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ--DSFNNIWIGT---W  331 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE--CSSCCEEEEE---B
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE--eCCCCEEEEe---c
Confidence            467999999888875554435789999987643221111        00   001334544443  4443344443   3


Q ss_pred             CCeEEEEECCCccEEeee-------c---cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE---eccCCCcee
Q 018248           75 SNKVMIWDDHENRYLGEL-------S---FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI---ETVVNPTGL  139 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~-------~---~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~---~~~~~~~~~  139 (359)
                      ++-|..++..++......       .   ....|.++...+++.+.+  .++.|..||..+++.....   ......+. 
T Consensus       332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~-  410 (781)
T 3v9f_A          332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL-  410 (781)
T ss_dssp             SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE-
T ss_pred             CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE-
Confidence            577888887654432211       1   235688999888887666  4678999998654432211   11123333 


Q ss_pred             eeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec---ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248          140 CDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA---HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~  216 (359)
                       ++..+.+..+.+  |..++-+..++........+..   ....|.++...++|.+. .|+. +. |..||..+++....
T Consensus       411 -~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~G-l~~~~~~~~~~~~~  484 (781)
T 3v9f_A          411 -CSLKDSEGNLWF--GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AG-VFVIDLASKKVIHH  484 (781)
T ss_dssp             -EEEECTTSCEEE--EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TE-EEEEESSSSSCCEE
T ss_pred             -EEEECCCCCEEE--EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-Cc-eEEEeCCCCeEEec
Confidence             333443333333  2244556666665544544432   34578889888888754 4445 45 89999877654332


Q ss_pred             eecC---CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          217 MRRG---AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       217 ~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      ....   .....|.++...++|++.+.....| |..|+.+++
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~  525 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQ  525 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCC
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCC
Confidence            2211   0135789999999998766544355 777877654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.65  E-value=0.00031  Score=65.89  Aligned_cols=235  Identities=9%  Similarity=0.060  Sum_probs=138.3

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecc-----cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFD-----RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      ...|.++...++|.+.+...++.|..|+..+........-.     .-....|..+....+++.+.+.+    .++-|..
T Consensus       356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt----~~~Gl~~  431 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT----HAGGLSI  431 (795)
T ss_dssp             CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE----TTTEEEE
T ss_pred             CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe----CcCceeE
Confidence            45699999999987665444778999998764332111000     00134455555544444255555    4577999


Q ss_pred             EECCCccEEeeec-----cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec------cCCCceeeeeecCCCc
Q 018248           81 WDDHENRYLGELS-----FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET------VVNPTGLCDVSQNAGP  148 (359)
Q Consensus        81 wd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  148 (359)
                      +|..+++......     ....|.++...+++.+.+ ..+.+.+||..+++.......      ....+..+....++. 
T Consensus       432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-  510 (795)
T 4a2l_A          432 LHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR-  510 (795)
T ss_dssp             EETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC-
T ss_pred             EeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC-
Confidence            9988776443221     235688999888887766 557799999876654322211      123344444443332 


Q ss_pred             cEEEecCCCCeeEEEEecCCeeeEEee-------cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec--
Q 018248          149 MVMACPGLLKGQVRVEDYGTKKSKYIT-------AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR--  219 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~--  219 (359)
                      +++++   ..| +..++...... .+.       .....|.++...++|.+.+.. .. . |..||..+++.. .+..  
T Consensus       511 lWigt---~~G-l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-G-l~~~d~~~~~~~-~~~~~~  581 (795)
T 4a2l_A          511 LWIGG---EEG-LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-G-FYCFNEKDKQIK-RYNTTN  581 (795)
T ss_dssp             EEEEE---SSC-EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-C-EEEEETTTTEEE-EECGGG
T ss_pred             EEEEe---CCc-eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-C-ceeECCCCCcEE-EeCCCC
Confidence            33333   345 44444333322 222       134568899998999865443 44 4 899998766543 3321  


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +.....|.++...++|++.+++ ..| |..|+.++..
T Consensus       582 gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~~~~~~  616 (795)
T 4a2l_A          582 GLPNNVVYGILEDSFGRLWLST-NRG-ISCFNPETEK  616 (795)
T ss_dssp             TCSCSCEEEEEECTTSCEEEEE-TTE-EEEEETTTTE
T ss_pred             CCchhheEEEEECCCCCEEEEc-CCc-eEEEcCCCCc
Confidence            2223468999999999877655 444 7788876543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.65  E-value=1.4e-05  Score=73.18  Aligned_cols=239  Identities=9%  Similarity=-0.008  Sum_probs=123.1

Q ss_pred             EEEEcc-CCCEEEEec-CC-----------ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248           11 HLALNQ-DHGCFATGT-ET-----------GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus        11 ~~~~s~-~g~~l~~~~-d~-----------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      ++++.+ +|++++.|+ +.           .+.+||..+.+-.....+...+......+++..++..+++ ++.  .+..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~-GG~--~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT-GGN--DAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE-CSS--STTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe-CCC--CCCc
Confidence            567777 888888876 32           4788998876543333332122222333455555554443 332  3468


Q ss_pred             EEEEECCCccEEeeec--cCcceeEEEEecceeEEE--e--c-----CeEEEEEcccceeeeeE----eccCCCceeeee
Q 018248           78 VMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--L--N-----QKVYVYNFTDLKLVDQI----ETVVNPTGLCDV  142 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~--d-----~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~  142 (359)
                      +.+||..+++....-.  ....-.++...+++++++  .  +     ..+.+||..+.+-...-    ...........+
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            9999988876544322  222223456666777766  1  2     46899998766432210    000000011112


Q ss_pred             ecCCCccEEEecCCCCe---------eEEEEecCCee-eEEeeccc---------ccccEEEEc-cCCcEEEEEeCCC--
Q 018248          143 SQNAGPMVMACPGLLKG---------QVRVEDYGTKK-SKYITAHA---------SRIASIAMT-LDGRFVATASSKG--  200 (359)
Q Consensus       143 ~~~~~~~~l~~~g~~d~---------~v~~~~~~~~~-~~~~~~~~---------~~i~~~~~s-~~~~~l~~~~~dg--  200 (359)
                      ..++ .++++  |..+|         .+..|+..... ......+.         ..-.++.|. .++++++.|+.++  
T Consensus       347 ~~~~-~iyv~--Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~  423 (656)
T 1k3i_A          347 RSDN-HAWLF--GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  423 (656)
T ss_dssp             TTTC-SCCEE--ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             ecCC-ceEEE--ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence            2222 22232  22333         34445544322 11111111         112334443 3778888887532  


Q ss_pred             ---------CeEEEEEcCCCcEEEEeecCC-CCcceEEEEecCCCCEEEEEcCC-----------CcEEEEEccCCC
Q 018248          201 ---------TLIRVFNTMDGSLLQEMRRGA-ERAEIYSLAFSSNAQWLAASSDK-----------GTVHVFGLKVDS  256 (359)
Q Consensus       201 ---------~~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~iw~~~~~~  256 (359)
                               . |.+||..+.+......... ....-.+++..|++++++.|+.+           ..+.+||..+.+
T Consensus       424 ~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          424 DSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                     4 7788887766544330111 11122345667899999998854           457888877643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.65  E-value=8.7e-05  Score=66.66  Aligned_cols=233  Identities=10%  Similarity=0.109  Sum_probs=132.7

Q ss_pred             CCEEEEec-CCceEEEEcCCCcceeeeecccCCC--Ccee-EEEEecc---CCEEEEEecCCC---CCCeEEEEECCCcc
Q 018248           18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR--GGTQ-LVSMLFR---SNIICLVNSGPH---QSNKVMIWDDHENR   87 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~--~~v~-~~~~~~~---~~~~~~~~~~~~---~d~~i~iwd~~~~~   87 (359)
                      +..+++++ ++.+..+|.++++........ .+.  ..+. ...+..+   +...++++....   .++.|.-+|..+|+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~-~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFA-DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECS-CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCC-CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            44566666 999999999999888776653 110  0111 0011111   121344432100   26899999999998


Q ss_pred             EEeeeccCc-ce-----------------------------------------eEEEEecceeEEE--e-----------
Q 018248           88 YLGELSFRS-EV-----------------------------------------KNVRLRRDRIVVV--L-----------  112 (359)
Q Consensus        88 ~~~~~~~~~-~v-----------------------------------------~~~~~~~~~~~~~--~-----------  112 (359)
                      .+....... .+                                         ..+++.|+...+.  .           
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            877654211 00                                         1234555433333  2           


Q ss_pred             ----------c----CeEEEEEcccceeeeeEeccCCC------c-eeeeee---cCCCc-cEEEecCCCCeeEEEEec-
Q 018248          113 ----------N----QKVYVYNFTDLKLVDQIETVVNP------T-GLCDVS---QNAGP-MVMACPGLLKGQVRVEDY-  166 (359)
Q Consensus       113 ----------d----~~i~i~d~~~~~~~~~~~~~~~~------~-~~~~~~---~~~~~-~~l~~~g~~d~~v~~~~~-  166 (359)
                                |    +.|..+|..+++.+..++.....      . ..+.+.   .+++. .+++. ++.+|.+++.+. 
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~-~~~~G~l~~lD~~  354 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAH-ADRNGFFYVVDRS  354 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEE-ECTTSEEEEEETT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEE-ECCCceEEEEECC
Confidence                      2    58999999999999887653221      1 111122   34432 13333 667899998554 


Q ss_pred             CCeeeEEeeccc-------------c--------------------------------cccEEEEccCCcEEEEEe----
Q 018248          167 GTKKSKYITAHA-------------S--------------------------------RIASIAMTLDGRFVATAS----  197 (359)
Q Consensus       167 ~~~~~~~~~~~~-------------~--------------------------------~i~~~~~s~~~~~l~~~~----  197 (359)
                      +++.+..+....             .                                .-..++++|+..++++..    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            444443332211             0                                001356677655444432    


Q ss_pred             -----------------------------CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          198 -----------------------------SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       198 -----------------------------~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                                                   .+|. |..||+.+++.+-+...+   .++..-.....+.+++.++.||.++
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcce-EEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEE
Confidence                                         2577 999999999988777642   1222211222466788899999999


Q ss_pred             EEEccCCC
Q 018248          249 VFGLKVDS  256 (359)
Q Consensus       249 iw~~~~~~  256 (359)
                      .||.++++
T Consensus       511 A~D~~tG~  518 (582)
T 1flg_A          511 AFDAKSGK  518 (582)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            99999987

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.59  E-value=5.5e-05  Score=62.19  Aligned_cols=188  Identities=9%  Similarity=-0.013  Sum_probs=105.6

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-e--c--CeEEEEEccccee
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-L--N--QKVYVYNFTDLKL  126 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~--d--~~i~i~d~~~~~~  126 (359)
                      ....+++.++++ +.++..   .++.|..||... +....+.....+..+++.+++++++ .  .  ..|..+|..+++.
T Consensus        33 ~pegia~~~~g~-lyv~d~---~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           33 FLENLASAPDGT-IFVTNH---EVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CEEEEEECTTSC-EEEEET---TTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcceEEECCCCC-EEEEeC---CCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            345667777665 333332   358899999654 4444445556788999999998766 2  2  2477777777765


Q ss_pred             eeeEeccCC-CceeeeeecCCCccEEEecCCCCeeEEEEecCCe--eeEEee---------cccccccEEEEccCCcEEE
Q 018248          127 VDQIETVVN-PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK--KSKYIT---------AHASRIASIAMTLDGRFVA  194 (359)
Q Consensus       127 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~--~~~~~~---------~~~~~i~~~~~s~~~~~l~  194 (359)
                      ......... ....++..+ +.. ++++ ...++.|++.+....  .+....         ..-...+.+  +|+++.|+
T Consensus       108 ~~~~~~~~~~~~~g~~~~~-~~~-~~v~-d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLS-DTQ-YLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEEEECTTCSCEEEEEESS-SSE-EEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEEEeCCCccccCcccccC-CCc-EEEE-ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            433322111 111222222 222 3333 334667777655432  121111         011123445  88888776


Q ss_pred             EEeC-CCCeEEEEEcCC-CcE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          195 TASS-KGTLIRVFNTMD-GSL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       195 ~~~~-dg~~i~iwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      .+.. .+. |..|++.. ++.  ...+..   ......++++++|+++++....+.|.+++..
T Consensus       183 v~d~~~~~-I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          183 VSNTEKML-LLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEETTTTE-EEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             EEeCCCCE-EEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            6654 556 99999864 321  112211   1245678999999887776667889998864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.55  E-value=0.00022  Score=58.85  Aligned_cols=175  Identities=10%  Similarity=-0.010  Sum_probs=110.8

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecce-eEEE---ecCeEEEEEccc----ceeeeeEeccCCCceeeeeecCC
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTD----LKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      ...|+..|+.+.+....+.....+..++|++.+ .++.   ..+.|..+++..    ......+.........+++.+.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            467999998887766555555667899999854 3333   568999999865    22222222222334567888777


Q ss_pred             CccEEEecCCCCeeEEEEecCCeeeEEee-cccccccEEEEccCCcEEEEEeCC--CCeEEEEEcCCCcEEEEeecCCCC
Q 018248          147 GPMVMACPGLLKGQVRVEDYGTKKSKYIT-AHASRIASIAMTLDGRFVATASSK--GTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--g~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                      ..++++-  ...+.|.+.+.++.....+. ........++++|.+..|+.+...  +. |..+++. |.....+... .-
T Consensus        89 ~~ly~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~d-G~~~~~~~~~-~~  163 (316)
T 1ijq_A           89 SNIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NI  163 (316)
T ss_dssp             TEEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SC
T ss_pred             CeEEEEE--CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCC-CCCeEEEEEC-CC
Confidence            6655553  24677888777775544443 233567899999976655555433  56 8888864 4444444221 23


Q ss_pred             cceEEEEecCCCCEEEEE-cCCCcEEEEEccC
Q 018248          224 AEIYSLAFSSNAQWLAAS-SDKGTVHVFGLKV  254 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~~~  254 (359)
                      .....+++++++..|..+ +..+.|..+|++.
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            467899999877666554 4567899999874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.55  E-value=0.00022  Score=58.81  Aligned_cols=227  Identities=7%  Similarity=-0.037  Sum_probs=135.0

Q ss_pred             EEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe-eec-cCcc
Q 018248           20 CFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG-ELS-FRSE   97 (359)
Q Consensus        20 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~-~~~~   97 (359)
                      +|+.+....|+..+++.........+.  .......++|.+..+.+.++..   ..+.|..+++..+.... .+. .-..
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~---~~~~I~r~~~~g~~~~~~~~~~~l~~   80 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDV---SEEAIKRTEFNKTESVQNVVVSGLLS   80 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEET---TTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEEC---CCCcEEEEEccCCCceEEEEcCCCCC
Confidence            566666778999999865322222221  1123445667666677777654   35889999987653221 122 2245


Q ss_pred             eeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE
Q 018248           98 VKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY  173 (359)
Q Consensus        98 v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~  173 (359)
                      ...+++.+ .+.+..   ..+.|.++++........+.........+++.|.+..++.+-. ...+.|...+.++.....
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~-~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC-SSSCEEEEEETTSCSCEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec-CCCCEEEEEEcCCCCeEE
Confidence            67888886 444444   5678999998543222222223333456788887665555432 235677777777755544


Q ss_pred             ee-cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          174 IT-AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       174 ~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      +. ..-...+.++++|++..|..+.. .+. |..+|+..... ..+... .......+++. .+.++.+-...+.|..++
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG~~~-~~~~~~-~~~~P~glav~-~~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNR-QAVVKG-SLPHPFALTLF-EDILYWTDWSTHSILACN  235 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEECS-CCSCEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCCCce-EEEecC-CCCCceEEEEe-CCEEEEEecCCCeEEEEE
Confidence            42 22345689999997776666654 455 99999754332 233221 23456778875 345556666678899898


Q ss_pred             ccCCC
Q 018248          252 LKVDS  256 (359)
Q Consensus       252 ~~~~~  256 (359)
                      ..+++
T Consensus       236 ~~~G~  240 (318)
T 3sov_A          236 KYTGE  240 (318)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            87665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.54  E-value=1.7e-05  Score=73.67  Aligned_cols=241  Identities=11%  Similarity=0.018  Sum_probs=127.3

Q ss_pred             ceEEEEEc-cCCCEEEEec--CC----ceEEEEcCCC-cceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeE
Q 018248            8 TIHHLALN-QDHGCFATGT--ET----GFRVYLSDPY-KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKV   78 (359)
Q Consensus         8 ~v~~~~~s-~~g~~l~~~~--d~----~i~iw~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i   78 (359)
                      .+...+|| |||++||.+.  +|    .|+++|++++ +... ..+.    .....+.|+++++.++++..... ....|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-cccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            67889999 9999998765  22    3999999987 5221 1121    12345679999988888764210 11478


Q ss_pred             EEEECCCccE--Eeeec--cCcceeEEEEecceeEEE------ecCeEEEEEcccce-ee--eeEe-ccCCCceeeeeec
Q 018248           79 MIWDDHENRY--LGELS--FRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLK-LV--DQIE-TVVNPTGLCDVSQ  144 (359)
Q Consensus        79 ~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~-~~--~~~~-~~~~~~~~~~~~~  144 (359)
                      .++++.+++.  ...+.  .......+.|+||+++++      ....|+++|+.++. ..  ..+. ..........+. 
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-  328 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-  328 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-
Confidence            8889877642  22222  233456789999998877      24578889987652 12  2222 222222222222 


Q ss_pred             CCCccEEEecCC--CCeeEEEEecCC-eeeEE-eecccc--cccEEEEccCCcEEEEEeCCCC-eEEEEEc-------CC
Q 018248          145 NAGPMVMACPGL--LKGQVRVEDYGT-KKSKY-ITAHAS--RIASIAMTLDGRFVATASSKGT-LIRVFNT-------MD  210 (359)
Q Consensus       145 ~~~~~~l~~~g~--~d~~v~~~~~~~-~~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~~dg~-~i~iwd~-------~~  210 (359)
                      .++.+++.+.-.  ....|...+... ...+. +..+..  .+..+.+. .+.++++...++. .|.++++       .+
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~  407 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKA  407 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCT
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccC
Confidence            255555554211  223555555542 22222 333333  34445543 2334555566664 1455665       33


Q ss_pred             CcEEEEeecCCCCcceEEEEe----cCCCC-EEEEEcCC---CcEEEEEccCCC
Q 018248          211 GSLLQEMRRGAERAEIYSLAF----SSNAQ-WLAASSDK---GTVHVFGLKVDS  256 (359)
Q Consensus       211 ~~~~~~~~~~~~~~~i~~~~~----s~~~~-~l~~~~~d---g~i~iw~~~~~~  256 (359)
                      ++....+... ....+..+.+    ++++. ++++.+..   ..+..+|+.+++
T Consensus       408 g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          408 GTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             CccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            4313344321 1123444533    34655 44443332   356777776554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=0.00011  Score=63.33  Aligned_cols=237  Identities=9%  Similarity=0.094  Sum_probs=133.5

Q ss_pred             ceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEEECC
Q 018248            8 TIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIWDDH   84 (359)
Q Consensus         8 ~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~~   84 (359)
                      ....|+++| ++..|.++. .+.|+.++++.........    .......+++.++++.++++..+.. ....+...+ .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-R  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-C
Confidence            457889998 455666655 6788889887644332211    2345677888888886666653210 112344444 3


Q ss_pred             CccEE--eeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEecc-CCCceeeeeecCCCccEEEecCCC
Q 018248           85 ENRYL--GELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETV-VNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        85 ~~~~~--~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      .+...  ..+........++++| ++.+++   .++.|..++...+......... ......++++|+++.++++-  ..
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d--~~  290 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV--VN  290 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE--TT
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE--CC
Confidence            33222  2222234467888999 676665   5789999998766542222221 12345689999988666654  24


Q ss_pred             CeeEEEEecCCe--e---eEEeecc---------------ccccc-EEEEc--------cCCcEEEEEeCCCCeEEEEEc
Q 018248          158 KGQVRVEDYGTK--K---SKYITAH---------------ASRIA-SIAMT--------LDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       158 d~~v~~~~~~~~--~---~~~~~~~---------------~~~i~-~~~~s--------~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      .+.|..++.++.  .   ...+.+.               -.... .++..        ++|.+.++=...+. |+.++ 
T Consensus       291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-  368 (430)
T 3tc9_A          291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-  368 (430)
T ss_dssp             TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-
T ss_pred             CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-
Confidence            566776444321  1   1222211               00122 44443        34555544445566 88888 


Q ss_pred             CCCcEEEEeecC---C----C--------CcceEEEEecC-CCCEEEEEcCCCcEEEEEcc
Q 018248          209 MDGSLLQEMRRG---A----E--------RAEIYSLAFSS-NAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       209 ~~~~~~~~~~~~---~----~--------~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~  253 (359)
                      .+|......-.+   .    .        -.....++++| ++.++++-.....|+.++++
T Consensus       369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            466544333210   0    0        12578999999 46666666667788888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.53  E-value=0.00032  Score=59.66  Aligned_cols=175  Identities=9%  Similarity=-0.009  Sum_probs=110.3

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      ...|+.+++..............+..++|++.+ .++.   ..+.|+.+++........+.........+++.+.+..++
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY  174 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  174 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEE
Confidence            467888888776655545545568899999754 4433   568999999865544333332223335678888777665


Q ss_pred             EEecCCCCeeEEEEecCCeeeEEee-cccccccEEEEccCCcEEEEEeC-C-CCeEEEEEcCCCcEEEEeecCCCCcceE
Q 018248          151 MACPGLLKGQVRVEDYGTKKSKYIT-AHASRIASIAMTLDGRFVATASS-K-GTLIRVFNTMDGSLLQEMRRGAERAEIY  227 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~-d-g~~i~iwd~~~~~~~~~~~~~~~~~~i~  227 (359)
                      ++-  ...+.|.+.+.++.....+. ..-.....++++|.+..|+.+.. . +. |..+++...........  .-....
T Consensus       175 ~~d--~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~~~~~~~~~--~~~~Pn  249 (386)
T 3v65_B          175 WTD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIADT--HLFWPN  249 (386)
T ss_dssp             EEE--TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSCEEEECS--SCSCEE
T ss_pred             EEc--CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE-EEEEeCCCCCcEEEEEC--CCCCee
Confidence            554  23567777666665444433 23356789999987766655543 3 56 88888754333322222  234678


Q ss_pred             EEEecCCCCEEEEE-cCCCcEEEEEccC
Q 018248          228 SLAFSSNAQWLAAS-SDKGTVHVFGLKV  254 (359)
Q Consensus       228 ~~~~s~~~~~l~~~-~~dg~i~iw~~~~  254 (359)
                      .++++|++..|..+ +..+.|..++++.
T Consensus       250 Glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          250 GLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            99999876655544 4567788888764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.49  E-value=0.00078  Score=62.51  Aligned_cols=227  Identities=11%  Similarity=-0.042  Sum_probs=135.0

Q ss_pred             EEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec-c
Q 018248           20 CFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS-F   94 (359)
Q Consensus        20 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-~   94 (359)
                      +|+.+....|+..+++..+......    ....+..+++.+..+.++++..   ..+.|+.+++...    .....+. .
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~---~~~~I~~~~l~g~~~~~~~~~vi~~~  469 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRD  469 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSS
T ss_pred             ccccccccceeEeeccCCcceeeec----CCCceEEEeecccCCeeEEeec---cceeEEEEeccCCCCCcceeEEEecC
Confidence            5566666778888887544332221    2345566777776677776664   3488988887653    2222233 3


Q ss_pred             CcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee
Q 018248           95 RSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK  170 (359)
Q Consensus        95 ~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~  170 (359)
                      ......|++.+.+ ++++   ..+.|.+.++........+.........+++.|....+|++-.| ..+.|.+...++..
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD  548 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCC
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCc
Confidence            3556788988765 3333   66899999986444333333333445678888887766665422 23678877777766


Q ss_pred             eEEeec-ccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          171 SKYITA-HASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       171 ~~~~~~-~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      ...+.. .-.....|++++.+..|+.+.. ... |..+++........+.....-.....|++.. ++++++-...+.|.
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~  626 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIF  626 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEE
Confidence            655543 3356789999987777766654 445 9999985444333333211223455777643 34445555667787


Q ss_pred             EEEccCCC
Q 018248          249 VFGLKVDS  256 (359)
Q Consensus       249 iw~~~~~~  256 (359)
                      ..+..+++
T Consensus       627 ~~dk~tG~  634 (791)
T 3m0c_C          627 SANRLTGS  634 (791)
T ss_dssp             EEETTTCC
T ss_pred             EEeCCCCc
Confidence            77766654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.48  E-value=0.00037  Score=58.35  Aligned_cols=176  Identities=10%  Similarity=-0.003  Sum_probs=110.5

Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (359)
                      ...|+..++........+.....+..++|++... ++.   ..+.|+.+++........+.........+++.+.+..++
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly  131 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  131 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred             ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence            4678888877665554444445688999997543 333   568899999865543333332223345678888777665


Q ss_pred             EEecCCCCeeEEEEecCCeeeEEee-cccccccEEEEccCCcEEEEEe-CC-CCeEEEEEcCCCcEEEEeecCCCCcceE
Q 018248          151 MACPGLLKGQVRVEDYGTKKSKYIT-AHASRIASIAMTLDGRFVATAS-SK-GTLIRVFNTMDGSLLQEMRRGAERAEIY  227 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-~d-g~~i~iwd~~~~~~~~~~~~~~~~~~i~  227 (359)
                      ++-  ...+.|.+.+.++.....+. ..-.....++++|.+..|+... .. +. |..+++.. .....+... .-....
T Consensus       132 ~~d--~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~dG-~~~~~~~~~-~~~~Pn  206 (349)
T 3v64_C          132 WTD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDG-SGRRIIADT-HLFWPN  206 (349)
T ss_dssp             EEE--TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTS-CSCEESCCS-SCSCEE
T ss_pred             EEc--CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCCC-CCcEEEEEC-CCCCcc
Confidence            554  24567888777775544443 3335678999999666555544 34 56 88888754 333333211 234678


Q ss_pred             EEEecCCCCEEEEE-cCCCcEEEEEccCC
Q 018248          228 SLAFSSNAQWLAAS-SDKGTVHVFGLKVD  255 (359)
Q Consensus       228 ~~~~s~~~~~l~~~-~~dg~i~iw~~~~~  255 (359)
                      .++++|++..|..+ ...+.|..++++..
T Consensus       207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          207 GLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            99999876665554 45677888888653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.45  E-value=0.00047  Score=57.98  Aligned_cols=258  Identities=13%  Similarity=0.168  Sum_probs=169.2

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecc
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRD  106 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  106 (359)
                      ..+.|.|+.......++...    ..  ..-++|..+.+++-+     ..++.++|+++.+.+..+....+|.--.|-.+
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~----Ad--sAIMnP~~~iiALra-----g~~lQiFnle~K~klks~~~~e~VvfWkWis~  116 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPIS----AD--SAIMNPASKVIALKA-----GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECC----CS--EEEECSSSSCEEEEE-----TTEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred             CeEEEEECCCCCcceecccc----cc--eeeeCCCCcEEEEec-----CCeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence            46888898877766655552    22  334677778777766     28999999999999999997778888888555


Q ss_pred             eeE-EEecCeEEEEEccc-ceeeeeEeccC--CCceeeeeecCCCccEEEecCC------CCeeEEEEecCCeeeEEeec
Q 018248          107 RIV-VVLNQKVYVYNFTD-LKLVDQIETVV--NPTGLCDVSQNAGPMVMACPGL------LKGQVRVEDYGTKKSKYITA  176 (359)
Q Consensus       107 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~d~~v~~~~~~~~~~~~~~~  176 (359)
                      ..+ ++.+..|+-|++.. ..+.+.+..|.  .....+.+..+.+..+++..|-      -.|.+.++..+.+..+.+.+
T Consensus       117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG  196 (494)
T 1bpo_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (494)
T ss_dssp             TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred             CeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence            444 44999999999953 34555565433  2344555555555544543332      35788889999998999999


Q ss_pred             ccccccEEEEccCC---cEEEEEeCC---CCeEEEEEcCCC--------cEEEEe--ecCCCCcceEEEEecCCCCEEEE
Q 018248          177 HASRIASIAMTLDG---RFVATASSK---GTLIRVFNTMDG--------SLLQEM--RRGAERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       177 ~~~~i~~~~~s~~~---~~l~~~~~d---g~~i~iwd~~~~--------~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~  240 (359)
                      |......+.+.-+.   .+++.+...   +. +.|-++...        +....+  ..........++..|+.-..+..
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv  275 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence            98776655553221   244444332   55 888887432        111111  11112345678888988888888


Q ss_pred             EcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCC
Q 018248          241 SSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN  320 (359)
Q Consensus       241 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  320 (359)
                      .+.-|.|++||++++...                          |.                -+...+.|...+-..+..
T Consensus       276 iTK~G~i~lyDleTgt~i--------------------------~~----------------nrIs~~~iF~t~~~~~~~  313 (494)
T 1bpo_A          276 ITKYGYIHLYDLETGTCI--------------------------YM----------------NRISGETIFVTAPHEATA  313 (494)
T ss_dssp             EETTSEEEEEETTTCCEE--------------------------EE----------------EECCSSCEEEEEEETTTT
T ss_pred             EecCceEEEEecccceee--------------------------ee----------------ecccCCceEEecccCCCC
Confidence            999999999999998732                          00                123344566666655556


Q ss_pred             EEEEEecCCeEEEEEeCC
Q 018248          321 TIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       321 ~l~~~~~dg~i~v~~~~~  338 (359)
                      -++.....|.|.--.++.
T Consensus       314 Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          314 GIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEEETTCEEEEEEECT
T ss_pred             cEEEEccCceEEEEEEcc
Confidence            666667788776655554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.45  E-value=0.00029  Score=55.60  Aligned_cols=197  Identities=9%  Similarity=0.079  Sum_probs=124.3

Q ss_pred             CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC--cceeEEEEecceeEEE---ecCeEEEEEcc
Q 018248           48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR--SEVKNVRLRRDRIVVV---LNQKVYVYNFT  122 (359)
Q Consensus        48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~---~d~~i~i~d~~  122 (359)
                      |-...+..+++.++.+.++.+..   .++.|...|.. ++.++.+...  .....+++.+++.+++   .++.+.++++.
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d---~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTIN---KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEE---TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             CcccCcceeEEeCCCCEEEEEEC---CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            44567888999988887877776   46899999977 8888887633  5788899999888765   56789999874


Q ss_pred             cce---eeeeEec------cCCCceeeeeecCCCccEEEecCCCCeeEEEEe--cCCeeeEEee-------cccccccEE
Q 018248          123 DLK---LVDQIET------VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED--YGTKKSKYIT-------AHASRIASI  184 (359)
Q Consensus       123 ~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~--~~~~~~~~~~-------~~~~~i~~~  184 (359)
                      ...   .+.....      .......+++.|.++.++++. ......|+.++  .....+..+.       .+...+.++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-CcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            432   2222221      122346789999888777665 22222344344  1111222221       123457899


Q ss_pred             EEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC--C-----CcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          185 AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA--E-----RAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       185 ~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      +++|....|.+-+.....+.++|. +++.+..+....  +     -.....|+|.++|++.++ ++-+.+++|.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            999976555544444443888985 566665554321  1     126689999999986555 6666555553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.44  E-value=0.0006  Score=58.83  Aligned_cols=236  Identities=10%  Similarity=0.043  Sum_probs=134.5

Q ss_pred             ceEEEEEccC--CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC-eEEEEEC
Q 018248            8 TIHHLALNQD--HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN-KVMIWDD   83 (359)
Q Consensus         8 ~v~~~~~s~~--g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~-~i~iwd~   83 (359)
                      ....|+|+|+  +..|.++. .+.|+.++.+++.....  .  +.......+++.++++ +.++..+...+. .+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~--~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK--T--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE--C--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe--e--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence            4578999995  45565555 68899999876543322  1  1234567788888888 444432110112 2333332


Q ss_pred             CCccE-EeeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeE-eccC-CCceeeeeecCCCccEEEecCC
Q 018248           84 HENRY-LGELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQI-ETVV-NPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        84 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      ..+.. ...+..-.....++++| ++.+.+   .++.|+.+|..++.....+ .... .....++++|+++.++++-.  
T Consensus       215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~--  292 (433)
T 4hw6_A          215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN--  292 (433)
T ss_dssp             GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET--
T ss_pred             CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC--
Confidence            22111 01122234456788999 777665   5678999998766652332 2111 11234889999876666542  


Q ss_pred             CCeeEEEEecCC--ee---eEEeecc---------------cccccEEEE---------ccCCcEEEEEeCCCCeEEEEE
Q 018248          157 LKGQVRVEDYGT--KK---SKYITAH---------------ASRIASIAM---------TLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       157 ~d~~v~~~~~~~--~~---~~~~~~~---------------~~~i~~~~~---------s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      ..+.|+..+.+.  ..   ...+.+.               -.....+++         .++|.+.++-...+. |+.++
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~  371 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLT  371 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEEC
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEEC
Confidence            456777655432  11   1122211               123566888         677776666556666 99998


Q ss_pred             cCCCcEEEEeecCCC----------------CcceEEEEec-CCCCEEEEEcCCCcEEEEEcc
Q 018248          208 TMDGSLLQEMRRGAE----------------RAEIYSLAFS-SNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       208 ~~~~~~~~~~~~~~~----------------~~~i~~~~~s-~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      . +|... .+.+...                -.....++++ ++|.++++-...+.|+.++++
T Consensus       372 ~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          372 P-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             T-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             C-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            4 66443 3322100                1247889999 677777776677888888765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00075  Score=58.21  Aligned_cols=147  Identities=14%  Similarity=0.103  Sum_probs=86.0

Q ss_pred             eEEEEec-cCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecC-------eEEEEEcccc
Q 018248           54 QLVSMLF-RSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQ-------KVYVYNFTDL  124 (359)
Q Consensus        54 ~~~~~~~-~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~-------~i~i~d~~~~  124 (359)
                      ..+++.+ +...+.++.    ..+.|+.+|+.+++.............+++++++..+. .|.       .+..++. .+
T Consensus       140 ~~lavdp~~~g~Lyv~d----~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVG----EQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CEEEEETTEEEEEEEEE----BTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CEEEECCCCCCeEEEEe----CCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            4566665 344444444    22788899987766554444556688999999987444 321       3444443 33


Q ss_pred             eee--eeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEe-ec-ccccccEEEEccCCcEEEEEe-CC
Q 018248          125 KLV--DQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYI-TA-HASRIASIAMTLDGRFVATAS-SK  199 (359)
Q Consensus       125 ~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~-~~-~~~~i~~~~~s~~~~~l~~~~-~d  199 (359)
                      ...  ..+.. ......+++.|+...++++-  ..++.|..++.++.....+ .. .......++|+|+|++|+.+. ..
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d--~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNS--WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEE--TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEE--CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            221  22322 22335677888555544443  3466787777765544222 21 123467899999999666655 45


Q ss_pred             CCeEEEEEcC
Q 018248          200 GTLIRVFNTM  209 (359)
Q Consensus       200 g~~i~iwd~~  209 (359)
                      +. |..++..
T Consensus       292 ~~-I~~~~~d  300 (430)
T 3tc9_A          292 HY-ILRSDYD  300 (430)
T ss_dssp             TE-EEEEEEE
T ss_pred             CE-EEEEeCC
Confidence            55 8888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.37  E-value=0.00086  Score=57.26  Aligned_cols=206  Identities=9%  Similarity=-0.017  Sum_probs=123.4

Q ss_pred             CCceEEEEEccCCCEEEEec--CCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ...+..|+|++.+..|..+.  .+.|+.++++...  ......+. ........+++.+....+.++..   ..+.|.+.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~---~~~~I~~~  186 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVA  186 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-SSCSCEEEEEEETTTTEEEEEET---TTTEEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-CCCCCcccEEEEecCCceEEEEC---CCCeEEEE
Confidence            35678999998766665554  6778888887521  01111111 11344566777776666666654   35889999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecce-eEEEe----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDR-IVVVL----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ++........+. .-.....+++.|.+ .++..    .+.|...++........+...-.....+++.+++..++++-  
T Consensus       187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD--  264 (400)
T 3p5b_L          187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD--  264 (400)
T ss_dssp             CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE--
T ss_pred             eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEE--
Confidence            977654444443 33557899999854 44332    36788888744332222222223446788998888766664  


Q ss_pred             CCCeeEEEEecCCeeeEEeecc---cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          156 LLKGQVRVEDYGTKKSKYITAH---ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      ...+.|...+.++...+.+...   -.....+++. .+.++++-...+. |..+|..+|+.+..+..
T Consensus       265 ~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEEEEC
T ss_pred             CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEEEec
Confidence            3466788877777655554321   2334566663 3444555556667 88888778877666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.0019  Score=60.45  Aligned_cols=237  Identities=12%  Similarity=0.018  Sum_probs=134.8

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeec-----c-cCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDF-----D-RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~-----~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      ...|.++...++|.+-+...++.|..|+............     . .-....|..+....++ .+.+++    .++-|.
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt----~~~Gl~  386 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGT----DGGGIN  386 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-CEEEEE----BSSCEE
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-CEEEEe----CCCcEE
Confidence            4679999999988755444388899998775432211100     0 0012345544443332 333333    346788


Q ss_pred             EEECCCccEEeee---c-cCcceeEEEEecceeEEE-e-cCeEEEEEcccceeeeeEe--ccCCCceeeeeecCCCccEE
Q 018248           80 IWDDHENRYLGEL---S-FRSEVKNVRLRRDRIVVV-L-NQKVYVYNFTDLKLVDQIE--TVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        80 iwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l  151 (359)
                      .++..+++.....   . ....|.++...+++.+.+ . ++.|..+|..+++......  .....+.  ++..+.+..+.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~--~i~~d~~g~lw  464 (781)
T 3v9f_A          387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR--VFYEDKNKKIW  464 (781)
T ss_dssp             EEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE--EEEECTTSEEE
T ss_pred             EEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE--EEEECCCCCEE
Confidence            8997665433211   1 236788898888887766 3 5789999986665432211  1123344  34444443334


Q ss_pred             EecCCCCeeEEEEecCCeeeEEeec-c-----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec--CCCC
Q 018248          152 ACPGLLKGQVRVEDYGTKKSKYITA-H-----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR--GAER  223 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~~~~~~~~~-~-----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~--~~~~  223 (359)
                      +.+  ..| +..++........+.. .     ...|.++...++|.+. .|+..+. +..||..+++.. .+..  +...
T Consensus       465 igt--~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~G-l~~~~~~~~~~~-~~~~~~~l~~  538 (781)
T 3v9f_A          465 IGT--HAG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGG-VGIYTPDMQLVR-KFNQYEGFCS  538 (781)
T ss_dssp             EEE--TTE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSC-EEEECTTCCEEE-EECTTTTCSC
T ss_pred             EEE--CCc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCC-EEEEeCCCCeEE-EccCCCCCCC
Confidence            332  344 5555544433332221 1     3568899998888855 4555445 888997666533 3331  1123


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..|.++...++|++.++.. +|.|..||.++++
T Consensus       539 ~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~  570 (781)
T 3v9f_A          539 NTINQIYRSSKGQMWLATG-EGLVCFPSARNFD  570 (781)
T ss_dssp             SCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred             CeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence            5789999999998766544 6654888876654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.34  E-value=0.0016  Score=59.01  Aligned_cols=227  Identities=6%  Similarity=-0.051  Sum_probs=140.4

Q ss_pred             CEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcc
Q 018248           19 GCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSE   97 (359)
Q Consensus        19 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~   97 (359)
                      .+|+.+..+.|+..++++........+  ..-.....+++.+..+.+.++..   .++.|..+++........+. ....
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~l~~d~~~~~lywtD~---~~~~I~r~~~~g~~~~~v~~~g~~~   81 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPL--TGVKEASALDFDVTDNRIYWTDI---SLKTISRAFMNGSALEHVVEFGLDY   81 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCC--CSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSC
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEc--CCCCceEEEEEECCCCEEEEEEC---CCCeEEEEECCCCCcEEEEeCCCCC
Confidence            466666778899999986544322222  12345667788877777777664   35899999976554333333 2245


Q ss_pred             eeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE
Q 018248           98 VKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY  173 (359)
Q Consensus        98 v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~  173 (359)
                      ...+++.+.+ ++..   ..+.|.+.++........+.........+++.|....++.+-.| ..+.|.....++.....
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEE
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEE
Confidence            7788888653 3333   56789999985433222222223334678888876665554322 25567777777766655


Q ss_pred             eecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          174 ITAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       174 ~~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      +...-.....+++++++..|..+.. .+. |..+|+..... ..+..  .......+++.. +.++++-...+.|...|.
T Consensus       161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          161 LVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            5545566789999998777776654 445 99999865433 23332  223456788764 445555555777888886


Q ss_pred             cCCC
Q 018248          253 KVDS  256 (359)
Q Consensus       253 ~~~~  256 (359)
                      .+++
T Consensus       236 ~tg~  239 (628)
T 4a0p_A          236 TSGQ  239 (628)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            6554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.32  E-value=0.00064  Score=53.65  Aligned_cols=191  Identities=8%  Similarity=0.077  Sum_probs=112.3

Q ss_pred             CceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            7 ITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ..+..++|+|++..|.+..  ++.|...|.+ ++......+. + ......+++..++ .++++..   .++.+.++++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-g-~~D~EGIa~~~~g-~~~vs~E---~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-F-VKDLETIEYIGDN-QFVISDE---RDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-S-CSSEEEEEECSTT-EEEEEET---TTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-C-CCChHHeEEeCCC-EEEEEEC---CCCcEEEEEcC
Confidence            4699999999877665544  6777777777 4444333332 2 2455566665444 3444443   35788888876


Q ss_pred             CccE---Eeeec-------cCcceeEEEEecceeEE-E--ecCeEEEEEcc---cceeeeeEec-------cCCCceeee
Q 018248           85 ENRY---LGELS-------FRSEVKNVRLRRDRIVV-V--LNQKVYVYNFT---DLKLVDQIET-------VVNPTGLCD  141 (359)
Q Consensus        85 ~~~~---~~~~~-------~~~~v~~~~~~~~~~~~-~--~d~~i~i~d~~---~~~~~~~~~~-------~~~~~~~~~  141 (359)
                      ....   +....       .......++++|.+..+ +  ......+|.+.   ..+.+..+..       .......++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22221       23445899999987333 3  33333444442   1111222211       223456788


Q ss_pred             eecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccc---------ccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          142 VSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHA---------SRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      +.|....+++.+  ..+..+...+.+++.+..+.-..         .....|+|.++|++. ..++... ++.|.-
T Consensus       180 ~dp~tg~lliLS--~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~-~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLS--HESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNR-FYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEE--TTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTE-EEEEEC
T ss_pred             EcCCCCeEEEEE--CCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCce-EEEEEe
Confidence            999877766665  24566766888887665553221         256899999999844 4466665 777753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.30  E-value=0.00095  Score=54.99  Aligned_cols=201  Identities=8%  Similarity=-0.034  Sum_probs=119.3

Q ss_pred             ceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            8 TIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      .+..++|++.+..|....  .+.|..++.+........ +. ..-.....+++.+....+.++..   ..+.|.++++..
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-~~-~~l~~p~glavd~~~g~ly~~d~---~~~~I~~~~~dG  110 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VV-SGLLSPDGLACDWLGEKLYWTDS---ETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-EE-ECCSCCCEEEEETTTTEEEEEET---TTTEEEEEETTS
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-Ec-CCCCCccEEEEEcCCCeEEEEEC---CCCEEEEEECCC
Confidence            456889998666655544  778888888765321111 10 01234456777766666666554   348899999765


Q ss_pred             ccEEeee-ccCcceeEEEEecceeEE-E-e---cCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCC
Q 018248           86 NRYLGEL-SFRSEVKNVRLRRDRIVV-V-L---NQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        86 ~~~~~~~-~~~~~v~~~~~~~~~~~~-~-~---d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      ......+ ........+++.|.+..+ . .   .+.|...++. ++....+ ...-.....+++++++..++++-  ...
T Consensus       111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD--~~~  187 (318)
T 3sov_A          111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWAD--AKL  187 (318)
T ss_dssp             CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEE--TTT
T ss_pred             CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEE--CCC
Confidence            4332222 234567899999864433 3 2   4678888874 3332232 22223345688998887766654  346


Q ss_pred             eeEEEEecCCeeeEEeec-ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          159 GQVRVEDYGTKKSKYITA-HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                      +.|...+.++...+.+.. .......+++.. +.++.+-...+. |..++..+++....+.
T Consensus       188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLREIH  246 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred             CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEEEe
Confidence            788887777755554432 334456777753 334444445566 8888877777655554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.27  E-value=0.00032  Score=64.26  Aligned_cols=229  Identities=9%  Similarity=0.037  Sum_probs=117.1

Q ss_pred             eEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCce-eEEEEeccCCEEEEEecCCC--CCCeEEEEEC
Q 018248            9 IHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGT-QLVSMLFRSNIICLVNSGPH--QSNKVMIWDD   83 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~   83 (359)
                      ..++++..+|+++++|+  +..+.+||..+.+-.....+.   .... ..+...+++...++.+....  .-..+.+||.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~---~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ---VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC---ccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            34577889999999998  567999998865433222222   2222 22333335554444331110  1257999999


Q ss_pred             CCccEEeee-----c-----------cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCC---------C
Q 018248           84 HENRYLGEL-----S-----------FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVN---------P  136 (359)
Q Consensus        84 ~~~~~~~~~-----~-----------~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~---------~  136 (359)
                      .+++....-     .           ....+..+. -.++..+.  ....+..||..+............         .
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G-g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~  400 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC  400 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred             CCCcceeCCCccccccccccccceeecCCceEEEE-CCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence            887644320     0           001111111 12333322  345788899876553332221111         1


Q ss_pred             ceeeeeecCCCccEEEecCCC--C-----e---eEEEEecCCeeeEEee---ccccc-ccEEEEccCCcEEEEEeCC---
Q 018248          137 TGLCDVSQNAGPMVMACPGLL--K-----G---QVRVEDYGTKKSKYIT---AHASR-IASIAMTLDGRFVATASSK---  199 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~--d-----~---~v~~~~~~~~~~~~~~---~~~~~-i~~~~~s~~~~~l~~~~~d---  199 (359)
                      ...+.+...+. .++++.|..  +     .   .+.+++.....-..+.   .+... -.+++..|++++++.|+.+   
T Consensus       401 ~~av~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          401 GNAVMYDAVKG-KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             CEEEEEETTTT-EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             CceEeccCCCC-eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            12223323333 344553421  1     1   4555555543333322   12222 3455677899999998854   


Q ss_pred             --------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248          200 --------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD  243 (359)
Q Consensus       200 --------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  243 (359)
                              .. +.+||..+.+-...-.............+.|||++++.|+.
T Consensus       480 ~~~~~~~~~~-v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          480 PFEDSTPVFT-PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TTCCCSBCCC-CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcCCCCcccc-eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                    45 89999887654332111111222334556799999999985

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.27  E-value=0.0011  Score=54.48  Aligned_cols=175  Identities=15%  Similarity=0.226  Sum_probs=111.4

Q ss_pred             CCCeEEEEECCCccEEeeeccCcceeEEEEeccee-------E-EE---e--cCeEEEEEcc-cceeeeeEe-------c
Q 018248           74 QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRI-------V-VV---L--NQKVYVYNFT-DLKLVDQIE-------T  132 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-------~-~~---~--d~~i~i~d~~-~~~~~~~~~-------~  132 (359)
                      ..+-+.+||+ +|+.++.+.. +.++.+..-|+-.       + ++   .  +++|.+|++. ....+..+.       .
T Consensus        48 k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t  125 (355)
T 3amr_A           48 KKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIAT  125 (355)
T ss_dssp             TTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEEC
T ss_pred             CCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCC
Confidence            4589999998 8999988864 5677777666321       2 22   4  6899999872 222344441       1


Q ss_pred             cCCCceeeee--ecCCCccEEEecCCCCeeEEEEecC--------CeeeEEeecccccccEEEEccCCcEEEEEeCCCCe
Q 018248          133 VVNPTGLCDV--SQNAGPMVMACPGLLKGQVRVEDYG--------TKKSKYITAHASRIASIAMTLDGRFVATASSKGTL  202 (359)
Q Consensus       133 ~~~~~~~~~~--~~~~~~~~l~~~g~~d~~v~~~~~~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~  202 (359)
                      ......-+|+  ++.....++.. ...+|.+..|...        .+.++.+.. .+.+..+...+....|+.+-++.. 
T Consensus       126 ~~~~pyGlcly~~~~~g~~yafV-~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G-  202 (355)
T 3amr_A          126 AINEVYGFTLYHSQKTGKYYAMV-TGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA-  202 (355)
T ss_dssp             CCSSCCCEEEEECTTTCCEEEEE-ECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-
T ss_pred             CCCCeeEEEEEecCCCCcEEEEE-ECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce-
Confidence            1123344565  55444444444 3456877775542        244555553 457889999998889999999977 


Q ss_pred             EEEEEcC-----CCcEEEEeecCCCCcceEEEEe--cCCCC-EEEEEc-CCCcEEEEEcc
Q 018248          203 IRVFNTM-----DGSLLQEMRRGAERAEIYSLAF--SSNAQ-WLAASS-DKGTVHVFGLK  253 (359)
Q Consensus       203 i~iwd~~-----~~~~~~~~~~~~~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~iw~~~  253 (359)
                      |..++.+     +++.+..+..+.-...+..|++  .++++ +|++++ .+.+..+||.+
T Consensus       203 Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          203 IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            8888855     3456655543323346888888  45665 555555 67789999997

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.22  E-value=0.00013  Score=67.83  Aligned_cols=198  Identities=9%  Similarity=0.055  Sum_probs=109.5

Q ss_pred             ceeEEEEe-ccCCEEEEEecCCC-CCCeEEEEECCCc-cEEeeeccCcceeEEEEecceeEEE---ec-----CeEEEEE
Q 018248           52 GTQLVSML-FRSNIICLVNSGPH-QSNKVMIWDDHEN-RYLGELSFRSEVKNVRLRRDRIVVV---LN-----QKVYVYN  120 (359)
Q Consensus        52 ~v~~~~~~-~~~~~~~~~~~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~---~d-----~~i~i~d  120 (359)
                      .+...+++ |+++.++++..... ....|+++|+.++ +.+.. ........+.|+||++.++   .+     ..|++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            56778999 99998887764210 2246999999998 63221 1122245789999986665   32     3688888


Q ss_pred             ccccee--eeeEecc-CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe--ee--EEee-cccccccEEEEccCCcE
Q 018248          121 FTDLKL--VDQIETV-VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK--KS--KYIT-AHASRIASIAMTLDGRF  192 (359)
Q Consensus       121 ~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~--~~--~~~~-~~~~~i~~~~~s~~~~~  192 (359)
                      +.+++.  ...+... ......+.++|+++.+++.+.......|++.+....  ..  +.+. .......++.|+.++.+
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            866532  2222222 222345689999987666553334556777666542  22  3333 33344555555444444


Q ss_pred             EEEEeCC--C--CeEEEEEcCCCcEEEE-eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          193 VATASSK--G--TLIRVFNTMDGSLLQE-MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       193 l~~~~~d--g--~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      ++....+  +  . |..+|+.++..... +..+.....+..+.+. .+.++++...++..+||-+
T Consensus       334 ~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          334 VILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             EEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred             EEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            4444443  2  4 66677654222112 2221122245666665 3345566667776554433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.19  E-value=0.0021  Score=54.16  Aligned_cols=230  Identities=13%  Similarity=0.184  Sum_probs=146.2

Q ss_pred             EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC-ccEE
Q 018248           11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE-NRYL   89 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~   89 (359)
                      +.-.+|..+.+|.=....+.|||+++.+......+    ..+|..-.|. +++.+++++     +..|.-|++.. ..+.
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~----~e~VvfWkWi-s~~~l~lVT-----~taVyHWsi~~~s~P~  139 (494)
T 1bpo_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWI-SLNTVALVT-----DNAVYHWSMEGESQPV  139 (494)
T ss_dssp             EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC----SSCCCEEEEE-ETTEEEEEC-----SSEEEEEESSSSCCCE
T ss_pred             eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec----CCCceEEEec-CCCeEEEEc-----CCeeEEecccCCCCch
Confidence            45567888888777788899999998777666665    4566655554 567888887     58999999864 3455


Q ss_pred             eeec-c----CcceeEEEEecceeEEE----------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC----c-c
Q 018248           90 GELS-F----RSEVKNVRLRRDRIVVV----------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG----P-M  149 (359)
Q Consensus        90 ~~~~-~----~~~v~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~  149 (359)
                      ..+. |    ..+|..-..+++.++++          ..|.+.+|..+. +.-+.+++|.....  .+..++.    . +
T Consensus       140 kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~--~~~~~g~~~~~~lf  216 (494)
T 1bpo_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA--QFKMEGNAEESTLF  216 (494)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEE--EEECTTCSSEEEEE
T ss_pred             hheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeE--EEecCCCCCCceEE
Confidence            5554 2    35677778888888776          357888998744 34455666544222  2222221    1 1


Q ss_pred             EEEecCCCCeeEEEEecCCe----------eeEEeec---ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248          150 VMACPGLLKGQVRVEDYGTK----------KSKYITA---HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~~----------~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~  216 (359)
                      .++.-....+.+++-.....          .+..+..   ..+-..++..++.-..+...+.-|. |.+||+.++.++..
T Consensus       217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~  295 (494)
T 1bpo_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYM  295 (494)
T ss_dssp             EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEE
T ss_pred             EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeee
Confidence            12221112356777443211          1111111   1233457778887778888889998 99999999999887


Q ss_pred             eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      -+-  ....|...+.+....=++.....|.|.--.++...
T Consensus       296 nrI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          296 NRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             ecc--cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            665  34566666665555556666788877777666544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.18  E-value=2.4e-05  Score=71.91  Aligned_cols=226  Identities=10%  Similarity=-0.032  Sum_probs=123.4

Q ss_pred             EEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC----ccEEeeec-cC
Q 018248           21 FATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE----NRYLGELS-FR   95 (359)
Q Consensus        21 l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~----~~~~~~~~-~~   95 (359)
                      |+.+..+.|+..++++.+...  .+.  ....+..+++.+..+.++++..   ..+.|+.+++..    ......+. ..
T Consensus       380 ll~~~~~~I~~id~~~~~~~~--~~~--~~~~p~gla~d~~~~~Ly~sD~---~~~~I~~~~~~g~~~~~~~~~~i~~~~  452 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSEYTS--LIP--NLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDI  452 (699)
T ss_dssp             BCCCCTTC-CEECTTSCCEEC--CSC--CCTTCCCCEEETTTTEEEECCT---TTTSBEEEESCCCCC-CCCCCBCCSCC
T ss_pred             EEecCccceEEEeCCCCccee--eec--cCcceEEEccccccCeEEEEec---CCCeEEEEecCCCCCCcceEEEEeCCC
Confidence            444445677777777543321  111  1234456677776777766654   347899998765    22222222 12


Q ss_pred             cceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeee
Q 018248           96 SEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS  171 (359)
Q Consensus        96 ~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~  171 (359)
                      .....+++.+ .+.+++   ..+.|.++++........+.........+++.|.+..++++-.+ ..+.|.+...++...
T Consensus       453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~  531 (699)
T 1n7d_A          453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI  531 (699)
T ss_dssp             --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCC
T ss_pred             CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCe
Confidence            3456778774 344444   56789999985443333333222334567888877665554322 236677666665444


Q ss_pred             EEee-cccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEE
Q 018248          172 KYIT-AHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV  249 (359)
Q Consensus       172 ~~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  249 (359)
                      ..+. ..-...+.|+|+|++..|+.+. ..+. |..+++........+...........|++..+ .++++....+.|..
T Consensus       532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~  609 (699)
T 1n7d_A          532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS  609 (699)
T ss_dssp             CEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred             eEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence            3332 2234567899999866555554 4556 99999854333222221111123445666443 45555556678999


Q ss_pred             EEccCCC
Q 018248          250 FGLKVDS  256 (359)
Q Consensus       250 w~~~~~~  256 (359)
                      ++..+++
T Consensus       610 ~d~~~G~  616 (699)
T 1n7d_A          610 ANRLTGS  616 (699)
T ss_dssp             EETTTEE
T ss_pred             EEccCCC
Confidence            8876554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.15  E-value=0.00051  Score=59.31  Aligned_cols=153  Identities=10%  Similarity=0.107  Sum_probs=91.7

Q ss_pred             ceeEEEEecc---eeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC---CCeeEEEEecCC
Q 018248           97 EVKNVRLRRD---RIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL---LKGQVRVEDYGT  168 (359)
Q Consensus        97 ~v~~~~~~~~---~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~d~~v~~~~~~~  168 (359)
                      ....++++|+   +.+++  ..+.|+.+|..+++...... .......++++++++ ++++-.+.   ..+.+.+ ....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~-~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF-TRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE-CGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEE-ECCC
Confidence            3568999984   66555  33799999987776554433 334456788888887 55554221   1122222 2221


Q ss_pred             eee--EEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE-EEEcCC
Q 018248          169 KKS--KYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL-AASSDK  244 (359)
Q Consensus       169 ~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d  244 (359)
                      ...  ..+. .-.....++++| +|.+.++-..++. |+.+|..++.....+...........++|+|++++| ++-...
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            111  1222 234557789999 6766555556677 999998777763333211122234579999999955 444556


Q ss_pred             CcEEEEEccC
Q 018248          245 GTVHVFGLKV  254 (359)
Q Consensus       245 g~i~iw~~~~  254 (359)
                      +.|+.+++..
T Consensus       295 ~~I~~~~~d~  304 (433)
T 4hw6_A          295 HCIYRVDYNR  304 (433)
T ss_dssp             TEEEEEEBCT
T ss_pred             CEEEEEeCCC
Confidence            7888888764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.14  E-value=0.0048  Score=57.33  Aligned_cols=203  Identities=9%  Similarity=-0.035  Sum_probs=119.6

Q ss_pred             CceEEEEEccCCCEEEEec--CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            7 ITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ..+..|+|++....|....  .+.|+.++++....  .....+. ........+++.+.++.++++..   ..+.|.+.+
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~---~~~~I~v~~  499 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVAD  499 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEET---TTTEEEEEE
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEec---CCCeEEEEe
Confidence            4567899998666555444  67788888874211  1111111 12344566788877777776654   358999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecce-eEEEe----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDR-IVVVL----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +........+. .-.....|++.|.+ .+++.    .+.|...++........+.........+++.+....+|++-  .
T Consensus       500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD--~  577 (791)
T 3m0c_C          500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD--S  577 (791)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE--T
T ss_pred             CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEe--C
Confidence            76554333333 33568899999864 44442    26788888854433333332323456688888887766664  2


Q ss_pred             CCeeEEEEecCCeeeEEeecc---cccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEee
Q 018248          157 LKGQVRVEDYGTKKSKYITAH---ASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       157 ~d~~v~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~  218 (359)
                      ..+.|...+.++...+.+...   -.....|++  .+..|+.+. ..+. |...|..+|+.+..+.
T Consensus       578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~-I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEA-IFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTE-EEEEETTTCCCCEEEE
T ss_pred             CCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCE-EEEEeCCCCcceEEee
Confidence            456788877777655554322   122345555  334555554 4455 8888877776655554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=0.0033  Score=54.64  Aligned_cols=244  Identities=7%  Similarity=0.022  Sum_probs=136.3

Q ss_pred             ceEEEEEcc-CCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEE-------eccCCEEEEEecCCC---C
Q 018248            8 TIHHLALNQ-DHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSM-------LFRSNIICLVNSGPH---Q   74 (359)
Q Consensus         8 ~v~~~~~s~-~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~~~~~~~~~~---~   74 (359)
                      ....|+|+| +...|.++.  .+.|++.|++............+.......+++       ..+++.++++.....   .
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 455554444  466888888765444322221011234677788       778876666553210   0


Q ss_pred             CCeEEEEECCC-ccEE-----eeeccCcceeEEEEecc-eeEEE---ecCeEEEEEcc-------ccee-----------
Q 018248           75 SNKVMIWDDHE-NRYL-----GELSFRSEVKNVRLRRD-RIVVV---LNQKVYVYNFT-------DLKL-----------  126 (359)
Q Consensus        75 d~~i~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~-------~~~~-----------  126 (359)
                      ...|.+++... ++..     ..+..-.....++++|+ +.+++   .++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            12366665333 2221     12221234567888994 55444   77889999987       4443           


Q ss_pred             eee-Eecc-CCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eee---EEeecc---c------------cccc-E
Q 018248          127 VDQ-IETV-VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKS---KYITAH---A------------SRIA-S  183 (359)
Q Consensus       127 ~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~---~~~~~~---~------------~~i~-~  183 (359)
                      ... +... ......++++|+++.++++-+  ..+.|+..+.++  ..+   ..+-+.   .            .... .
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence            112 2221 223457899999986666642  455666643332  211   222221   0            1123 4


Q ss_pred             EEEc-------cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC----------------------CCcceEEEEecCC
Q 018248          184 IAMT-------LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA----------------------ERAEIYSLAFSSN  234 (359)
Q Consensus       184 ~~~s-------~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~----------------------~~~~i~~~~~s~~  234 (359)
                      ++..       ++|.+.++=..... |+.++ .+|. +.++.+..                      .-.....|+++++
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEccccccccCCCeEEEEECCCCE-EEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            4444       45665555555666 99998 5664 33443210                      0124678999997


Q ss_pred             -CCEEEEEcCCCcEEEEEccCCC
Q 018248          235 -AQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       235 -~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                       |.++++=.....|+.++++...
T Consensus       455 ~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCEEEEEECCCCc
Confidence             7777776777889999998765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.14  E-value=0.00057  Score=57.40  Aligned_cols=155  Identities=12%  Similarity=0.114  Sum_probs=97.8

Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecc----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc---
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAH----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS---  212 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~---  212 (359)
                      ..+.++..++++.    ++.||.-... ....+.+...    -..|..+..+|+|++||..+..+  |.|-.+..+.   
T Consensus        27 ~~~~n~t~i~~a~----~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~--V~Vv~LP~~~~~~  100 (452)
T 3pbp_A           27 FSSQNGTRIVFIQ----DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE--IFVMEVPWGYSNV  100 (452)
T ss_dssp             EEETTTTEEEEEE----TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE--EEEEECCTTCSCC
T ss_pred             EEEcCCCEEEEEE----CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe--EEEEEecCccccC
Confidence            3445555555543    5688874433 3445555433    23688999999999999987664  8888887321   


Q ss_pred             ---------EEEEeecCC----CCcceEEEEecCC---CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248          213 ---------LLQEMRRGA----ERAEIYSLAFSSN---AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKN  276 (359)
Q Consensus       213 ---------~~~~~~~~~----~~~~i~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
                               ..+.+..+.    ...+|..+.|+|-   +..|++-..|+.|++||+......+.                
T Consensus       101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~----------------  164 (452)
T 3pbp_A          101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI----------------  164 (452)
T ss_dssp             CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE----------------
T ss_pred             cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc----------------
Confidence                     122333321    2467999999995   45899999999999999998443320                


Q ss_pred             CCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEe--cCCeEEE
Q 018248          277 SSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVG--LDGSYYK  333 (359)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~v  333 (359)
                           .+.   . ....|..       ......+.+++|++++-.|++.+  ..|.||-
T Consensus       165 -----~L~---k-~~~~fg~-------d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          165 -----VLN---K-PNNSFGL-------DARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             -----EES---C-CCSEEES-------CSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             -----chh---c-cccccCC-------CcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence                 000   0 0001110       11124678999999888888866  7787763

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.11  E-value=4.8e-05  Score=69.91  Aligned_cols=202  Identities=10%  Similarity=-0.042  Sum_probs=118.5

Q ss_pred             CceEEEEEccCCCEEEEec--CCceEEEEcCC----CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            7 ITIHHLALNQDHGCFATGT--ETGFRVYLSDP----YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      ..+..|+|++.+..|..+.  .+.|+.++++.    ....  ..+. ........+++.+....++++..   ..+.|.+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~-~~~~~P~glavD~~~g~LY~tD~---~~~~I~v  479 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVIS-RDIQAPDGLAVDWIHSNIYWTDS---VLGTVSV  479 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCC-SCC--CCCEECCCSSSBCEECCT---TTSCEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEe-CCCCCcceEEEEeeCCcEEEEec---cCCeEEE
Confidence            3456889999877777665  67899999875    1111  1111 01122344666655555555443   3588999


Q ss_pred             EECCCccEEeeec-cCcceeEEEEeccee-EEEe----cCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEe
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRI-VVVL----NQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~----d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      +++........+. .......+++.|.+. +++.    .+.|.++++.. .....+ .........+++++++..+|++-
T Consensus       480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred             EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence            9976554333333 234567889998644 3332    26788877643 222222 12222345688998888777664


Q ss_pred             cCCCCeeEEEEecCCeeeEEeecc---cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          154 PGLLKGQVRVEDYGTKKSKYITAH---ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      +  ..+.|...+.++...+.+...   ......|++..+ .++++....+. |..++..+++.+..+..
T Consensus       559 ~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          559 S--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             T--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECCCT
T ss_pred             c--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEeec
Confidence            3  466788877776555544321   233455666544 34444455667 99999888887777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.05  E-value=0.0036  Score=51.78  Aligned_cols=234  Identities=12%  Similarity=0.099  Sum_probs=120.8

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeee-cc-cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRD-FD-RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~-~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ....+.+|.|.+++..+++|..+.| +...+.++ ..... .. ......+..+.+.  ++.+.+++    .++.|.. .
T Consensus        34 ~~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~--~~~~~~~g----~~g~i~~-S  104 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWLVGVNATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSFQ--GNEGWIVG----EPPIMLH-T  104 (327)
T ss_dssp             CSSCEEEEEESSSSCEEEEETTTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEEE--TTEEEEEE----ETTEEEE-E
T ss_pred             CCCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEec--CCeEEEEE----CCCeEEE-E
Confidence            3567999999988888887777654 33333332 22221 11 0112345555554  45555454    3465544 2


Q ss_pred             CCCccEEeeec----cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecC
Q 018248           83 DHENRYLGELS----FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        83 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ...|+.-....    ++..+..+.+.+++..++  .++.|+.- ...++.-..+. .....+..+.+.+++.  ++++ +
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~--~~~~-g  180 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGE--YVAV-S  180 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSC--EEEE-E
T ss_pred             CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCc--EEEE-E
Confidence            23343333222    234577787776666555  45544321 12233222222 2233455566666543  3544 3


Q ss_pred             CCCeeEEE-EecCCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC--CCCcceEEEEe
Q 018248          156 LLKGQVRV-EDYGTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG--AERAEIYSLAF  231 (359)
Q Consensus       156 ~~d~~v~~-~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~  231 (359)
                       ..|.+.. ++..+..-..+ ......+..+.+.+++++++ ++.+|. +++.+...++.-..+...  .....+.++++
T Consensus       181 -~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          181 -SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             -TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             -CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence             3555665 44323322222 23455788899999987664 456776 776642224433333221  11235889999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+++.+++++. +|.| ++..+.++
T Consensus       258 ~~~~~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          258 RTPNEVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             SSSSCEEEEES-TTCE-EEESSTTS
T ss_pred             cCCCEEEEEeC-CCeE-EEeCCCCc
Confidence            98888777654 6655 34444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.01  E-value=0.0081  Score=54.43  Aligned_cols=200  Identities=6%  Similarity=-0.064  Sum_probs=121.8

Q ss_pred             CceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            7 ITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ..+..|+|++.+..|..+.  ++.|..++++..........   .......+++.+....+.++..   ..+.|.+.++.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~---g~~~P~GlAvD~~~~~LY~tD~---~~~~I~v~~~d  110 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF---GLDYPEGMAVDWLGKNLYWADT---GTNRIEVSKLD  110 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCCCEEEEETTTTEEEEEET---TTTEEEEEETT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC---CCCCcceEEEEeCCCEEEEEEC---CCCEEEEEecC
Confidence            3577999999777766554  78888888875433222221   1234566778777777766654   35899999976


Q ss_pred             CccEEeee-ccCcceeEEEEecc-eeEEEe----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           85 ENRYLGEL-SFRSEVKNVRLRRD-RIVVVL----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        85 ~~~~~~~~-~~~~~v~~~~~~~~-~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      .......+ ..-.....+++.|. |.+...    .+.|...++.... ...+-........+++.++++.++++-+  ..
T Consensus       111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~--~~  187 (628)
T 4a0p_A          111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDL--DT  187 (628)
T ss_dssp             STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEET--TT
T ss_pred             CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEEC--CC
Confidence            54332222 23355789999984 544442    4678888874333 2333222334456888888877666643  46


Q ss_pred             eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEe
Q 018248          159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEM  217 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~  217 (359)
                      +.|...+.++...+.+.........+++.. +.+.++-...+. |...|..+++....+
T Consensus       188 ~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          188 NLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQNRTII  244 (628)
T ss_dssp             TEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEE
T ss_pred             CEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCceEEE
Confidence            678877777654444444444456777764 344444444666 888887776544333

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.96  E-value=0.0093  Score=53.96  Aligned_cols=228  Identities=7%  Similarity=-0.031  Sum_probs=128.0

Q ss_pred             CEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE-Eeeec-cCc
Q 018248           19 GCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY-LGELS-FRS   96 (359)
Q Consensus        19 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~-~~~   96 (359)
                      .+|+-+..+.|+..+++..........  ........+++.+..+.+.++..   ..+.|..+++..... ...+. .-.
T Consensus        10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~--~~~~~~~~ld~~~~~~~ly~sD~---~~~~I~r~~~~g~~~~~~v~~~~~~   84 (619)
T 3s94_A           10 PLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDV---SEEAIKRTEFNKTESVQNVVVSGLL   84 (619)
T ss_dssp             CCEEEECSSBEEEECCC---------C--BCCSCEEEEEEETTTTEEEEEET---TTTEEEEEEC-----CEEEECSSCS
T ss_pred             ceEEEeccccEEEEeCCCCcceEEEEE--cCCCceEEEEEEeCCCEEEEEEC---CCCeEEEEEccCCCceEEEEeCCCC
Confidence            456666678899999875421111121  12345567788887787777664   358898888765432 22223 225


Q ss_pred             ceeEEEEecc-eeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE
Q 018248           97 EVKNVRLRRD-RIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK  172 (359)
Q Consensus        97 ~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~  172 (359)
                      ....+++.+. +++.+   ..+.|.+.++........+.........+++.|....++++-.+ ..+.|.....++....
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRF  163 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCE
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceE
Confidence            6889999984 44443   56899999985433222222233334568888876665554322 2456766667765554


Q ss_pred             Eee-cccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          173 YIT-AHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       173 ~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      .+. ..-...+.+++++++..|..+. ..+. |..+|+.... ...+... .......+++..+ ..+++-...+.|...
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V~~~  239 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTN-RQAVVKG-SLPHPFALTLFED-ILYWTDWSTHSILAC  239 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCE-EC----------CCCEEESSS-EEEEECTTTCSEEEE
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCc-cEEEEeC-CCCCceEEEEeCC-EEEEecCCCCEEEEE
Confidence            443 2344678999999776666654 4456 8888875433 3222211 1123356777655 444444456778888


Q ss_pred             EccCCC
Q 018248          251 GLKVDS  256 (359)
Q Consensus       251 ~~~~~~  256 (359)
                      |..+++
T Consensus       240 d~~tg~  245 (619)
T 3s94_A          240 NKYTGE  245 (619)
T ss_dssp             ESSSCC
T ss_pred             ECCCCc
Confidence            877664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.89  E-value=0.0071  Score=49.77  Aligned_cols=133  Identities=12%  Similarity=0.248  Sum_probs=88.0

Q ss_pred             ecCeEEEEEcccceeeeeEeccCCCceeeeeec----CCCcc-EEEecCCC--CeeEEEEec--CCeeeEEeec------
Q 018248          112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQ----NAGPM-VMACPGLL--KGQVRVEDY--GTKKSKYITA------  176 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~~~g~~--d~~v~~~~~--~~~~~~~~~~------  176 (359)
                      ..+.+.+||+ +++.++.+..  ...+-+.+-|    .++.. +++++...  +++|.++..  ....+..+..      
T Consensus        48 k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~  124 (355)
T 3amr_A           48 KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIA  124 (355)
T ss_dssp             TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEE
T ss_pred             CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcC
Confidence            5678999999 8888888753  3445555554    22221 22222434  578888755  3445555522      


Q ss_pred             cc-ccccEEEE--ccC-Cc-EEEEEeCCCCeEEEEEcC-------CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC
Q 018248          177 HA-SRIASIAM--TLD-GR-FVATASSKGTLIRVFNTM-------DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK  244 (359)
Q Consensus       177 ~~-~~i~~~~~--s~~-~~-~l~~~~~dg~~i~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  244 (359)
                      .. ..+..+++  +|. ++ ++++...+|. +..|++.       +.+.+++|..   .+.+..+...+....|+.+-++
T Consensus       125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             CCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCCCeEEEeccc
Confidence            11 55677888  674 44 6788888898 9999882       3466777775   3578899999988899998888


Q ss_pred             CcEEEEEcc
Q 018248          245 GTVHVFGLK  253 (359)
Q Consensus       245 g~i~iw~~~  253 (359)
                      .-  ||.+.
T Consensus       201 ~G--Iw~~d  207 (355)
T 3amr_A          201 EA--IWKFS  207 (355)
T ss_dssp             TE--EEEEE
T ss_pred             ce--EEEEe
Confidence            54  56555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.64  E-value=0.0085  Score=58.27  Aligned_cols=220  Identities=14%  Similarity=0.151  Sum_probs=137.2

Q ss_pred             CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecc
Q 018248           27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRD  106 (359)
Q Consensus        27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  106 (359)
                      ..|.|.|+.......++...    .  ...-++|..+.+++-+     ..++.|+|+++.+.+..+..+.+|.--.|-..
T Consensus        48 ~~vvIidl~~~~~~~rrpi~----A--dsAIMnP~~~iiALra-----g~~lQiFnl~~k~klks~~~~e~VvfWkWis~  116 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPIS----A--DSAIMNPASKVIALKA-----GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (1630)
T ss_pred             ceEEEEECCCCCCccccccc----c--hhhccCCCcceEEEec-----CCeEEEeehHHhhhhcccccCCCceEEEecCC
Confidence            46888888876655444432    1  1223566667666654     28999999999999999887778888888555


Q ss_pred             eeE-EEecCeEEEEEccc-ceeeeeEeccC--CCceeeeeecCCCccEEEecC------CCCeeEEEEecCCeeeEEeec
Q 018248          107 RIV-VVLNQKVYVYNFTD-LKLVDQIETVV--NPTGLCDVSQNAGPMVMACPG------LLKGQVRVEDYGTKKSKYITA  176 (359)
Q Consensus       107 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g------~~d~~v~~~~~~~~~~~~~~~  176 (359)
                      ..+ ++.+..|+.|++.. ..+.+.+..|.  ....++.+..+.+..+++..|      .-.|.+.++....+..+.+.+
T Consensus       117 ~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg  196 (1630)
T 1xi4_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (1630)
T ss_pred             CeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence            444 44999999999953 34444443332  123344444444444444322      235788888888888888888


Q ss_pred             ccccccEEEEc--cC-CcEEEEEeC---CCCeEEEEEcCCC---cEEE-------EeecCCCCcceEEEEecCCCCEEEE
Q 018248          177 HASRIASIAMT--LD-GRFVATASS---KGTLIRVFNTMDG---SLLQ-------EMRRGAERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       177 ~~~~i~~~~~s--~~-~~~l~~~~~---dg~~i~iwd~~~~---~~~~-------~~~~~~~~~~i~~~~~s~~~~~l~~  240 (359)
                      |.+....+.+.  +. ..+++.+..   .+. +.|-++...   ....       .+..........++..|+.-..+..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence            87766555553  11 223333322   245 888887432   1110       0111111234567778887778888


Q ss_pred             EcCCCcEEEEEccCCCCC
Q 018248          241 SSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       241 ~~~dg~i~iw~~~~~~~~  258 (359)
                      .+.-|.|+++|+.++...
T Consensus       276 itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EecCceEEEEecccchhh
Confidence            889999999999998743

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.56  E-value=0.0096  Score=48.55  Aligned_cols=160  Identities=10%  Similarity=0.076  Sum_probs=97.0

Q ss_pred             eeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEe-ecc-------cccccEEEE---ccCCcEEEEEeC--------
Q 018248          138 GLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYI-TAH-------ASRIASIAM---TLDGRFVATASS--------  198 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~-~~~-------~~~i~~~~~---s~~~~~l~~~~~--------  198 (359)
                      ....|.+....++ ++ ....+.|..|+..+.....+ ...       ...+..+.|   .|+++++++...        
T Consensus        16 E~~~wd~~~g~~~-vs-~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           16 EDTIYDRTRQVFY-QS-NLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             SCEEEETTTTEEE-EE-ETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             cCccCcCCCCEEE-EE-eccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            4567766555433 33 44678898888774432222 111       113578999   688888776442        


Q ss_pred             -----CCCeEEEEEcC---CCcEEEEeecC--C---------CCcceEEEEecCCCCEEEEEcCC-CcEEEEEccCCCCC
Q 018248          199 -----KGTLIRVFNTM---DGSLLQEMRRG--A---------ERAEIYSLAFSSNAQWLAASSDK-GTVHVFGLKVDSGS  258 (359)
Q Consensus       199 -----dg~~i~iwd~~---~~~~~~~~~~~--~---------~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~  258 (359)
                           +.. |..||+.   +++.+......  .         .......++..++|+..++++.. +.  ||.+......
T Consensus        94 ~~~~g~~~-v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~~  170 (334)
T 2p9w_A           94 QSSHGASS-FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGKT  170 (334)
T ss_dssp             CCSSSCCE-EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSCC
T ss_pred             cccCCCCE-EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCCE
Confidence                 566 8999998   77766554321  0         11358899999999999988877 65  4444433211


Q ss_pred             CCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          259 PGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                                                 +..+   +.....     ....--.+.++++|||+.|++....|.+..+++.
T Consensus       171 ---------------------------~~~~---~~~~~~-----~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 ---------------------------VSTF---AWESGN-----GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ---------------------------EEEE---EECCCC-----SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             ---------------------------Eeee---eecCCC-----cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence                                       0000   000000     0000124578999999999998889999888765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.56  E-value=0.026  Score=46.96  Aligned_cols=203  Identities=12%  Similarity=0.115  Sum_probs=110.5

Q ss_pred             eEEEEEccCCCEEEEe-------------cCCceEEEEcCCCc-ceeeeecccC----CCCceeEEEEec--cCC-EEEE
Q 018248            9 IHHLALNQDHGCFATG-------------TETGFRVYLSDPYK-PIMRRDFDRN----PRGGTQLVSMLF--RSN-IICL   67 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~-------------~d~~i~iw~~~~~~-~~~~~~~~~~----h~~~v~~~~~~~--~~~-~~~~   67 (359)
                      .-.++..|+|..++++             .+|.|.++|.++.. ......+...    ..-....+.+..  ++. .+++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3466678888877776             37889999987321 1112222200    112334444444  233 3444


Q ss_pred             EecCCCCCCeEEEEECCCc-c---EEeeecc--CcceeEEEEecceeEEE-ec-------------------CeEEEEEc
Q 018248           68 VNSGPHQSNKVMIWDDHEN-R---YLGELSF--RSEVKNVRLRRDRIVVV-LN-------------------QKVYVYNF  121 (359)
Q Consensus        68 ~~~~~~~d~~i~iwd~~~~-~---~~~~~~~--~~~v~~~~~~~~~~~~~-~d-------------------~~i~i~d~  121 (359)
                      +.... .+..|.+|++..+ .   .+..+.+  -...+++.+.++|.+.+ .+                   +.|+.+|.
T Consensus       132 vnh~~-~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          132 VNHPG-SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EECST-TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EECCC-CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            43332 3578888876543 2   2233332  24578899999998766 21                   34555554


Q ss_pred             ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC--Ce--eeEEeecccccccEEEEcc-CCcEEEEE
Q 018248          122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG--TK--KSKYITAHASRIASIAMTL-DGRFVATA  196 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~--~~~~~~~~~~~i~~~~~s~-~~~~l~~~  196 (359)
                        ++ +..+...-...+-++|+|+++.++++-+  ..+.|..++.+  +.  ..+.+ ...+..-.+++.+ +|++.+++
T Consensus       211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          211 --ND-VRVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             --TC-CEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             --Ce-EEEeecCCcccCcceECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence              32 2222222233467899999988777653  45677775543  21  22233 2245667889999 59877766


Q ss_pred             eCCCCeEEEEEcC--CCcEEEEee
Q 018248          197 SSKGTLIRVFNTM--DGSLLQEMR  218 (359)
Q Consensus       197 ~~dg~~i~iwd~~--~~~~~~~~~  218 (359)
                      ..++..|..|+..  .+..+..+.
T Consensus       285 ~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          285 HPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             ESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             cCCceEEEEECCCCCCCCEEEEEE
Confidence            5453214444432  244444443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=0.018  Score=50.10  Aligned_cols=155  Identities=7%  Similarity=0.052  Sum_probs=89.3

Q ss_pred             ceeEEEEecc--eeEEE---ecCeEEEEEcccceeeeeEeccC---CCceeeee-------ecCCCccEEEecCCC----
Q 018248           97 EVKNVRLRRD--RIVVV---LNQKVYVYNFTDLKLVDQIETVV---NPTGLCDV-------SQNAGPMVMACPGLL----  157 (359)
Q Consensus        97 ~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~l~~~g~~----  157 (359)
                      ....|+|.|.  +.+++   ..+.|++.|+.++.....+....   .....++|       +++++.++++.....    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568899983  44444   23578889987766554443321   22456788       888876555542210    


Q ss_pred             CeeEEEEecCC--eee-----EEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcC-------CCcE---------
Q 018248          158 KGQVRVEDYGT--KKS-----KYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTM-------DGSL---------  213 (359)
Q Consensus       158 d~~v~~~~~~~--~~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~-------~~~~---------  213 (359)
                      ...|.+.+...  ...     ..+.. -.....++++|++ .++++-..++. |..+|+.       ++..         
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeecccccccc
Confidence            12244433232  211     22322 2345688899954 45555556777 9999987       5543         


Q ss_pred             --EEE-eecCCCCcceEEEEecCCCCEEE-EEcCCCcEEEEEccC
Q 018248          214 --LQE-MRRGAERAEIYSLAFSSNAQWLA-ASSDKGTVHVFGLKV  254 (359)
Q Consensus       214 --~~~-~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~  254 (359)
                        ... +... .......++|+|+|++|. +-+....|+.++...
T Consensus       298 g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          298 NTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             cccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence              222 2221 234568999999999544 445667788876653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.40  E-value=0.01  Score=57.70  Aligned_cols=231  Identities=13%  Similarity=0.189  Sum_probs=132.6

Q ss_pred             EEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc-cEEe
Q 018248           12 LALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN-RYLG   90 (359)
Q Consensus        12 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~   90 (359)
                      .-.+|..+.+|.=....+.|||+++........+    ..+|..-.|. +++.+++++     +..|.-|++... .+..
T Consensus        71 AIMnP~~~iiALrag~~lQiFnl~~k~klks~~~----~e~VvfWkWi-s~~~l~lVT-----~~aVyHW~~~~~s~P~k  140 (1630)
T 1xi4_A           71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWI-SLNTVALVT-----DNAVYHWSMEGESQPVK  140 (1630)
T ss_pred             hccCCCcceEEEecCCeEEEeehHHhhhhccccc----CCCceEEEec-CCCeeEEEc-----CCeEEEeccCCCCccHH
Confidence            4457777777776688899999997666654554    3455554443 567788887     588999998642 4444


Q ss_pred             eec-c----CcceeEEEEecceeEEE----------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC-ccEEE--
Q 018248           91 ELS-F----RSEVKNVRLRRDRIVVV----------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG-PMVMA--  152 (359)
Q Consensus        91 ~~~-~----~~~v~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~--  152 (359)
                      .+. |    ..+|..-..+++.++++          ..|.+.+|..+. +.-+.+++|........+.-... ..+++  
T Consensus       141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             HHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEE
Confidence            443 2    45677777788888776          357888998743 33344555544332222211111 11111  


Q ss_pred             ecCCCCeeEEEEecCCe----ee------EEeec---ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          153 CPGLLKGQVRVEDYGTK----KS------KYITA---HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       153 ~~g~~d~~v~~~~~~~~----~~------~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      ......+.++|-.....    +.      ..+..   ...-..++..++.-..+...+.-|. |.+||+.++.++..-+-
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhccc
Confidence            11112256666333211    11      01111   1222346667776677888888998 99999999988765443


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                        ...+|...+-+....-++.....|.|.--.++...
T Consensus       299 --s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          299 --SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             --cCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence              23345444444333334445567766655555443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.38  E-value=0.04  Score=44.98  Aligned_cols=151  Identities=6%  Similarity=0.027  Sum_probs=94.6

Q ss_pred             eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEee-ecc-------CcceeEEEE---ecceeEEE--e--------
Q 018248           54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGE-LSF-------RSEVKNVRL---RRDRIVVV--L--------  112 (359)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~~~--~--------  112 (359)
                      ....|......+.+.+-   ..++|..|+...+..... +..       ...+..+.+   .|++++++  .        
T Consensus        16 E~~~wd~~~g~~~vs~l---~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNL---YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             SCEEEETTTTEEEEEET---TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCccCcCCCCEEEEEec---cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            34566655555555553   469999999875543332 221       124678999   58877766  2        


Q ss_pred             ------cCeEEEEEcc---cceeeeeEecc-------------CCCceeeeeecCCCccEEEecCCCC-eeEEEEecCCe
Q 018248          113 ------NQKVYVYNFT---DLKLVDQIETV-------------VNPTGLCDVSQNAGPMVMACPGLLK-GQVRVEDYGTK  169 (359)
Q Consensus       113 ------d~~i~i~d~~---~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~g~~d-~~v~~~~~~~~  169 (359)
                            +..|..||+.   +++.+......             ......+++.++++-  .++ ++.. +.|...+.+++
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna--YVt-~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS--YVA-FALGMPAIARVSADGK  169 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE--EEE-EEESSCEEEEECTTSC
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE--EEe-CCCCCCeEEEEeCCCC
Confidence                  4779999998   78776655421             112345566666553  332 3234 55665666665


Q ss_pred             eeEEeec------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          170 KSKYITA------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       170 ~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                      .+..+..      .....+.|+++|+|+.|++....|. +..+|+.+.
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~p  216 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKP  216 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCC
Confidence            4443321      1223679999999998888877888 999998753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.26  E-value=0.064  Score=44.78  Aligned_cols=225  Identities=10%  Similarity=0.064  Sum_probs=114.3

Q ss_pred             ceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecc--cCCCCceeEEEEecc---CCEEEEEecCCCCC---CeEE
Q 018248            8 TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFD--RNPRGGTQLVSMLFR---SNIICLVNSGPHQS---NKVM   79 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~---~~~~~~~~~~~~~d---~~i~   79 (359)
                      .-..|+|.|||+++++-.++.|++++  .++......+.  .........++++++   +..+.++.... .+   +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~-~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA-EGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC-TTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC-CCCCccEEE
Confidence            45789999999976665588899988  33322111111  011234566777766   44554443211 11   5777


Q ss_pred             EEECCCcc-----EE-eeecc----CcceeEEEEecceeEEEec----------------CeEEEEEcccc---------
Q 018248           80 IWDDHENR-----YL-GELSF----RSEVKNVRLRRDRIVVVLN----------------QKVYVYNFTDL---------  124 (359)
Q Consensus        80 iwd~~~~~-----~~-~~~~~----~~~v~~~~~~~~~~~~~~d----------------~~i~i~d~~~~---------  124 (359)
                      .++...+.     .+ ..+..    ......++|.|+|.+.+.+                +.|.-++....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            88766432     11 11221    1234689999999766622                35655554320         


Q ss_pred             ---eeeeeE-eccCCCceeeeeecCCCccEEEecCCCCe-------eEEEEecCC-----------------eeeEEeec
Q 018248          125 ---KLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKG-------QVRVEDYGT-----------------KKSKYITA  176 (359)
Q Consensus       125 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~-------~v~~~~~~~-----------------~~~~~~~~  176 (359)
                         .....+ .++.+ ..-+++.|+...++++-.+. +.       .|.+-....                 .+...+. 
T Consensus       189 ~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g~-~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-  265 (352)
T 2ism_A          189 RRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHGP-SGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-  265 (352)
T ss_dssp             CTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             CCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcCC-CCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence               011111 12222 23467777544555554332 22       233211111                 1122221 


Q ss_pred             ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE------EEEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248          177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL------LQEMRRGAERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       177 ~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      +......++| .+|.++++.-..+. |...++.....      ...+..  ....+..+++.|||.++++..
T Consensus       266 ~~~ap~G~~~-~~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 QGFPPGNLAF-FRGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TCCCEEEEEE-ETTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCcceEE-ECCEEEEEECCCCE-EEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence            2223456777 46766555545555 77777653321      122222  235789999999998777654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.25  E-value=0.056  Score=43.96  Aligned_cols=175  Identities=8%  Similarity=0.020  Sum_probs=98.6

Q ss_pred             ccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----e-------------cCeEEEEEcc
Q 018248           60 FRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----L-------------NQKVYVYNFT  122 (359)
Q Consensus        60 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~-------------d~~i~i~d~~  122 (359)
                      ++++.+.+....  .++.|...+..... ...+.. ..  +--+++++..+.    .             ...|+..++.
T Consensus        23 ~~g~~iy~~n~~--d~~~ly~~~~dg~~-~~~l~~-~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           23 ESDGEVFFSNTN--DNGRLYAMNIDGSN-IHKLSN-DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EETTEEEEEEGG--GTTEEEEEETTSCS-CEEEEE-EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EeCCEEEEEeCC--CCceEEEEcCCCCC-CEEccC-Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            467777776543  24677777744333 333331 11  234577777666    2             2467777775


Q ss_pred             cceeeeeEeccCCCceeeeeecCCCccEEEe-cCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CC
Q 018248          123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMAC-PGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KG  200 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg  200 (359)
                      ..+. ..+..  .  ....++++++.++.+. +......|+.-..++...+.+..+..    .+++|+++.|+-.+. ..
T Consensus        97 g~~~-~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           97 GHGS-TVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             SCCC-EEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred             CCcc-eEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence            5542 22322  1  1236778888755543 11235566666667766666665533    456888988876665 55


Q ss_pred             CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC--cEEEEEccCCC
Q 018248          201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG--TVHVFGLKVDS  256 (359)
Q Consensus       201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~  256 (359)
                      . |..-++..+.....+..     ... ..++|++.+|+-....+  .|..-+++...
T Consensus       168 ~-Iy~~~l~g~~~~~l~~~-----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          168 Q-LYRYDTASQSEALFYDC-----NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             C-EEEEETTTTEEEEEECS-----CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             e-EEEEECCCCCEEEEeCC-----Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            6 88888766654433331     222 23569999887665432  45555555443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.06  E-value=0.17  Score=45.86  Aligned_cols=225  Identities=8%  Similarity=-0.031  Sum_probs=125.0

Q ss_pred             EEEEecCCceEEEEcCCCccee-eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcc
Q 018248           20 CFATGTETGFRVYLSDPYKPIM-RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSE   97 (359)
Q Consensus        20 ~l~~~~d~~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~   97 (359)
                      +|+.+..+.|+..++++..... ...+.  .-.....+++.+..+.+.++..   ..+.|..+++........+. .-..
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~~--~l~~~~~ld~d~~~~~ly~sD~---~~~~I~r~~~~g~~~~~v~~~~~~~  393 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDIVLQLE--DIRHAIAIDYDPVEGYIYWTDD---EVRAIRRSFIDGSGSQFVVTAQIAH  393 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCEECCCS--CCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSC
T ss_pred             EEEEEcccceEEEecCCCccceeEEecc--ccCccEEEEEEcCCCeEEEEeC---CCCeEEEEEcCCCccEEEEECCCCC
Confidence            4555556677777776543221 11111  1233455666665666766654   35889999876543333333 2246


Q ss_pred             eeEEEEecc-eeEEE---ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE
Q 018248           98 VKNVRLRRD-RIVVV---LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK  172 (359)
Q Consensus        98 v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~  172 (359)
                      ...+++... +++..   ..+.|.+.++.... ...+ ...-.....+++.|....++++-.| ....|.....++....
T Consensus       394 p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g-~~~~I~r~~~dG~~~~  471 (619)
T 3s94_A          394 PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSDRV  471 (619)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCE
T ss_pred             cCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCC-CCCEEEEEccCCCccE
Confidence            778888863 43333   56789999885432 2333 2233345678888876655554322 2456666666665444


Q ss_pred             Eee-cccccccEEEEccCCcEEEEEeCC-CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248          173 YIT-AHASRIASIAMTLDGRFVATASSK-GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF  250 (359)
Q Consensus       173 ~~~-~~~~~i~~~~~s~~~~~l~~~~~d-g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  250 (359)
                      .+. ..-...+.+++++++..|..+... +. |..+++........+..  ......+++...+ .+..+-...+.|...
T Consensus       472 ~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~--~l~~P~glav~~~-~ly~tD~~~~~I~~~  547 (619)
T 3s94_A          472 VLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTGRRVLVED--KIPHIFGFTLLGD-YVYWTDWQRRSIERV  547 (619)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCCCEEEEEC--CCCSSCCEEEETT-EEEEECTTSSCEEEE
T ss_pred             EEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCceEEEecc--CCCCcEEEEEECC-EEEEeecCCCeEEEE
Confidence            443 234567899999877777666544 55 88888754332222221  1123345565433 333333345567777


Q ss_pred             EccCC
Q 018248          251 GLKVD  255 (359)
Q Consensus       251 ~~~~~  255 (359)
                      +..++
T Consensus       548 ~k~~g  552 (619)
T 3s94_A          548 HKRSA  552 (619)
T ss_dssp             ESSSC
T ss_pred             EcCCC
Confidence            76665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.06  E-value=0.1  Score=43.51  Aligned_cols=229  Identities=13%  Similarity=0.086  Sum_probs=118.3

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecc--cCCCCceeEEEEecc---CCEEEEEecC-CCCC----C
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFD--RNPRGGTQLVSMLFR---SNIICLVNSG-PHQS----N   76 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~---~~~~~~~~~~-~~~d----~   76 (359)
                      .....|+|.|||+++++-.++.|++++.+ ++ .....+.  .........+++.++   ...+.++... . .+    .
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~-~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA-EGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC-GGGCEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC-CCCCcce
Confidence            34578999999987666658889888733 33 2112110  011234566777765   3444443321 0 12    5


Q ss_pred             eEEEEECCCc-------cEE-eeec--cCcceeEEEEecceeEEEe--c--------------CeEEEEEccccee----
Q 018248           77 KVMIWDDHEN-------RYL-GELS--FRSEVKNVRLRRDRIVVVL--N--------------QKVYVYNFTDLKL----  126 (359)
Q Consensus        77 ~i~iwd~~~~-------~~~-~~~~--~~~~v~~~~~~~~~~~~~~--d--------------~~i~i~d~~~~~~----  126 (359)
                      .|..++...+       +.+ ..+.  .......+.|.|+|.+.+.  +              +.|..++.. ++.    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCC
Confidence            6777776543       111 1122  1123467999999977662  1              355555542 221    


Q ss_pred             ----eeeE-eccCCCceeeeeecCCCccEEEecCCCC-eeEEEEecCC-----------------eeeEEeecccccccE
Q 018248          127 ----VDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLK-GQVRVEDYGT-----------------KKSKYITAHASRIAS  183 (359)
Q Consensus       127 ----~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d-~~v~~~~~~~-----------------~~~~~~~~~~~~i~~  183 (359)
                          ...+ .++.++ .-++|.++...++++-.+... ..|.+-....                 .++..+.........
T Consensus       185 pf~~~~i~a~G~rnp-~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          185 PFPNSPIWSYGHRNP-QGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             SSTTCCEEEECCSCC-CEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCCcEEEEccCCc-ceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence                1111 223332 357788744445554433211 1222211110                 122222111234677


Q ss_pred             EEEc-------cCCcEEEEEeCCCCeEEEEEcCCC-cEE--EEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248          184 IAMT-------LDGRFVATASSKGTLIRVFNTMDG-SLL--QEMRRGAERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       184 ~~~s-------~~~~~l~~~~~dg~~i~iwd~~~~-~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      ++|.       .+|.++++.-..+. |...++... +..  ..+... ....+..+++.|||.++++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence            8883       56766666555566 888887653 322  233221 235789999999998777654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.06  E-value=0.061  Score=45.42  Aligned_cols=133  Identities=14%  Similarity=0.172  Sum_probs=83.0

Q ss_pred             ecCeEEEEEcccceeeeeEecc----CCCceeeeeecCCCccEEEecCCCCeeEEEEecC-C---e---------eeEEe
Q 018248          112 LNQKVYVYNFTDLKLVDQIETV----VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-T---K---------KSKYI  174 (359)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~---~---------~~~~~  174 (359)
                      .++.||.-++.....-+.+...    ...+..+.++|+++.  ||..|  +..|.|-... +   .         ..+.+
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~l--LAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty  114 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDL--LCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY  114 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSE--EEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCE--EEEec--CCeEEEEEecCccccCcccccccccceeEE
Confidence            7888888888644444444443    224666888888876  55444  4456652222 1   0         11222


Q ss_pred             ec------ccccccEEEEccC---CcEEEEEeCCCCeEEEEEcCCCc--EEEEeec-------CCCCcceEEEEecCCCC
Q 018248          175 TA------HASRIASIAMTLD---GRFVATASSKGTLIRVFNTMDGS--LLQEMRR-------GAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       175 ~~------~~~~i~~~~~s~~---~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~-------~~~~~~i~~~~~s~~~~  236 (359)
                      .-      ...+|..+.|+|-   +..|++-..|+. |++||+....  +. .+..       ......|.+++|.+++-
T Consensus       115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence            22      2467999999995   458999999999 9999997522  22 2221       11225788999999877


Q ss_pred             EEEEEc--CCCcEEEE
Q 018248          237 WLAASS--DKGTVHVF  250 (359)
Q Consensus       237 ~l~~~~--~dg~i~iw  250 (359)
                      .|...+  ..|.|+-.
T Consensus       193 TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCCCEEEE
Confidence            666644  77876644

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.05  E-value=0.099  Score=43.07  Aligned_cols=189  Identities=8%  Similarity=-0.054  Sum_probs=100.8

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ++..+..+.+.++++.++++.++.|  |....+......... ++...+..+.+.+++..++ ++    .++.+..-+-.
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~-~~~~~~~~~~~~~~~~~~~-~g----~~G~~~~S~d~  191 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQ-EAIGVMRNLNRSPSGEYVA-VS----SRGSFYSTWEP  191 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEEC-SCCCCEEEEEECTTSCEEE-EE----TTSSEEEEECT
T ss_pred             CCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeec-CCCcceEEEEEcCCCcEEE-EE----CCCcEEEEeCC
Confidence            3456788888888887777766643  333332222322221 3455666677766555443 33    23444433212


Q ss_pred             CccEEeee--ccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEecc----CCCceeeeeecCCCccEEEecCC
Q 018248           85 ENRYLGEL--SFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETV----VNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        85 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      .++.-..+  .....+..+.+.+++.+++  .+|.+++.+...++.-..+...    ...+..+.+.+++  .++++ + 
T Consensus       192 gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-g-  267 (327)
T 2xbg_A          192 GQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN--EVWLA-G-  267 (327)
T ss_dssp             TCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS--CEEEE-E-
T ss_pred             CCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC--EEEEE-e-
Confidence            12222222  2456788888988887666  6777777643234443333221    1224445555543  33444 3 


Q ss_pred             CCeeEEEEecCCeeeEEeec---ccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          157 LKGQVRVEDYGTKKSKYITA---HASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       157 ~d~~v~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      .++.+..-...+..-..+..   ....+.++.|.++++ +++++.+|. |.-++
T Consensus       268 ~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~-i~~~~  319 (327)
T 2xbg_A          268 GAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGI-LLRYV  319 (327)
T ss_dssp             STTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTE-EEEEC
T ss_pred             CCCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCce-EEEEc
Confidence            36666543333444343332   245688999976665 556667887 66554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.041  Score=45.31  Aligned_cols=109  Identities=12%  Similarity=0.110  Sum_probs=66.2

Q ss_pred             EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEE-Ee-ccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248           20 CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVS-ML-FRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS   96 (359)
Q Consensus        20 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~-~~-~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~   96 (359)
                      .+++++ ||.|.-+|.++++........  ...++.... -. .....++++...  .||.|..++..+|.....+..+.
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~--~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPF--GDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCS--TTTEEEEEETTTEEEEEEEEHHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEEC--CCCEEEEEECCCCcEEeeecccc
Confidence            556666 999999999988887766541  101111100 00 112244444211  47999999998886655544222


Q ss_pred             cee--EEEE------------ecceeEEE--ecCeEEEEEcccceeeeeEec
Q 018248           97 EVK--NVRL------------RRDRIVVV--LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        97 ~v~--~~~~------------~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      .+.  -+..            +.++.+++  .++.+...|+.+|+.+..+..
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            121  1221            24666666  899999999999999998864

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.68  E-value=0.41  Score=44.57  Aligned_cols=228  Identities=15%  Similarity=0.198  Sum_probs=119.7

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      .+.|.+|.-..+|.+- .|+...+..||-...+..  ..........|.++.  .+.+..+.++.    +.-+..||..+
T Consensus        21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~--~~~~~~~~~~i~~i~--~d~~g~lWigT----~~Gl~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQH--FTYGENNNTRIYCGV--IIDNTYLYMGT----DNGILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEEC--SCTTSTTSSCEEEEE--EETTTEEEEEE----TTEEEEEETTT
T ss_pred             cceEEEEEECCCCCEE-EEECCCccccCCCceEEE--EccCCCCCceEEEEE--EcCCCcEEEEe----CCCeEEEeCCC
Confidence            4679999988888544 455455777774321111  000000123344433  33443444442    24588999877


Q ss_pred             ccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec-----cCCCceeeeeecCCCc-cEEEecCCC
Q 018248           86 NRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVSQNAGP-MVMACPGLL  157 (359)
Q Consensus        86 ~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~l~~~g~~  157 (359)
                      .+...... ....|.++... ++.+.+ ..+.+..+|..+++.. .+..     ....+.  ++..+.+. +++++   .
T Consensus        92 ~~f~~~~~~~~~~i~~i~~~-~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~--~i~~d~~g~lWigt---~  164 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMALQ-GDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIY--SIIRTKDNQIYVGT---Y  164 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEEE-TTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEE--EEEECTTCCEEEEE---T
T ss_pred             CEEECcccCCCceEEEEEec-CCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEE--EEEEcCCCCEEEEe---C
Confidence            64332111 23356666554 454444 6668899998655432 2211     112233  33444333 34433   3


Q ss_pred             CeeEEEEecCCeeeEEeecc------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          158 KGQVRVEDYGTKKSKYITAH------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       158 d~~v~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      .| +..++........+...      ...|.++...+++..|..|+. +. +..+|..+++... +... ....|.++..
T Consensus       165 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~~-~~~l-~~~~i~~i~~  239 (758)
T 3ott_A          165 NG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIKQ-TEAF-HNNSIKSLAL  239 (758)
T ss_dssp             TE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEEE-EEEE-EEEEEEEEEE
T ss_pred             CC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEEe-ccCC-CCCeEEEEEE
Confidence            45 44445444333332211      123778887777765555654 45 8899987765432 2111 2246888888


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ..+|.+.+. +.+| +.+++..+..
T Consensus       240 d~~g~lWig-T~~G-l~~~~~~~~~  262 (758)
T 3ott_A          240 DGNGDLLAG-TDNG-LYVYHNDTTP  262 (758)
T ss_dssp             CTTCCEEEE-ETTE-EEEECCTTSC
T ss_pred             cCCCCEEEE-eCCc-eeEEecCCCc
Confidence            888877664 4444 7888776543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.34  E-value=0.88  Score=44.48  Aligned_cols=172  Identities=13%  Similarity=0.183  Sum_probs=100.3

Q ss_pred             CeEEEEECCCccEEeeec--cCcceeEEEE---ecc-eeEEE-------------ecCeEEEEEcccceeeeeEe-ccCC
Q 018248           76 NKVMIWDDHENRYLGELS--FRSEVKNVRL---RRD-RIVVV-------------LNQKVYVYNFTDLKLVDQIE-TVVN  135 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~---~~~-~~~~~-------------~d~~i~i~d~~~~~~~~~~~-~~~~  135 (359)
                      ..|++.|..+.+.+..+.  ....+.+++.   ..+ ..+++             ..|.|++|++..++.....+ ...+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            457888888888777666  3445555553   222 23443             24789999986443322221 1234


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC-CCcE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM-DGSL  213 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~-~~~~  213 (359)
                      ++.  ++++-+.. +++..   ...+++|+...+ .++.-..+-..+..+.....+.+++.|..-.. |.++..+ ....
T Consensus       887 ~v~--al~~~~g~-Lla~i---g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~~~~  959 (1158)
T 3ei3_A          887 AVY--SMVEFNGK-LLASI---NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRS-VLLLAYKPMEGN  959 (1158)
T ss_dssp             CEE--EEEEETTE-EEEEE---TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBC-EEEEEEETTTTE
T ss_pred             cCE--EEeeeCCE-EEEEc---CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhhe-EEEEEEEcCCCe
Confidence            443  44443333 44443   458898776643 23311111122444444446788999987777 7765443 2334


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      +..+.....+..++++.+-.++ .++.+..+|.+.+......
T Consensus       960 L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          960 FEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             EEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTT
T ss_pred             EEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCC
Confidence            4455545566789999887554 6677889999999988764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.15  E-value=0.47  Score=39.49  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec----cCcceeEEEEecc----eeEEE--e-c-----
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS----FRSEVKNVRLRRD----RIVVV--L-N-----  113 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~----~~~~v~~~~~~~~----~~~~~--~-d-----  113 (359)
                      ....+++.+++. ++++.    .++.|.+++  +++  .+..+.    .......++++|+    +.+.+  . .     
T Consensus        32 ~P~~ia~~pdG~-l~V~e----~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAE----RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CEEEEEECTTSC-EEEEE----TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CceEEEEcCCCe-EEEEe----CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            345677777776 33333    458999998  333  222221    2356789999998    44433  2 2     


Q ss_pred             CeEEEEEcccce-----ee-eeEe---ccCCCceeeeeecCCCccEEEe
Q 018248          114 QKVYVYNFTDLK-----LV-DQIE---TVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus       114 ~~i~i~d~~~~~-----~~-~~~~---~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      +.|..++....+     .+ ..+.   ...+....+++.|++ .++++.
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~  152 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTT  152 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEEC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEE
Confidence            678888875431     11 1122   111233568888887 455543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.00  E-value=0.55  Score=39.02  Aligned_cols=136  Identities=10%  Similarity=0.077  Sum_probs=72.6

Q ss_pred             ecCeEEEEEccc--ceeeeeEeccC-------CCceeeeeec--CCCccEEEe-cCCCCeeEEEEe--cCCeeeE---Ee
Q 018248          112 LNQKVYVYNFTD--LKLVDQIETVV-------NPTGLCDVSQ--NAGPMVMAC-PGLLKGQVRVED--YGTKKSK---YI  174 (359)
Q Consensus       112 ~d~~i~i~d~~~--~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~l~~-~g~~d~~v~~~~--~~~~~~~---~~  174 (359)
                      .+|.|.++|..+  ++ ...+....       -...-+.+.+  ++...++++ .+..+..+.++.  ..+....   .+
T Consensus        81 ~~G~I~~~d~~~~~~~-~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPA-VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCC-EEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCc-eEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            478899999863  22 12222111       1122334434  333223333 222245666643  3333322   22


Q ss_pred             ecc-cccccEEEEccCCcEEEEEeC-----------------CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          175 TAH-ASRIASIAMTLDGRFVATASS-----------------KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       175 ~~~-~~~i~~~~~s~~~~~l~~~~~-----------------dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      .+. -...+.+++.++|.+.++...                 .|. |.-+|.  ++.. .+..  .-...+.++||||++
T Consensus       160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~-vyr~d~--~~~~-~~~~--~l~~pNGia~spDg~  233 (355)
T 3sre_A          160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF-VTYYSP--NDVR-VVAE--GFDFANGINISPDGK  233 (355)
T ss_dssp             CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE-EEEECT--TCCE-EEEE--EESSEEEEEECTTSS
T ss_pred             ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE-EEEEEC--CeEE-Eeec--CCcccCcceECCCCC
Confidence            221 235689999999998777541                 233 444443  4322 2222  224678999999998


Q ss_pred             EEEEEc-CCCcEEEEEccC
Q 018248          237 WLAASS-DKGTVHVFGLKV  254 (359)
Q Consensus       237 ~l~~~~-~dg~i~iw~~~~  254 (359)
                      .|..+. ..+.|..|++..
T Consensus       234 ~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          234 YVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEEGGGTEEEEEEECT
T ss_pred             EEEEEeCCCCeEEEEEECC
Confidence            776654 567899999974

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.98  E-value=0.52  Score=38.99  Aligned_cols=158  Identities=10%  Similarity=0.005  Sum_probs=82.9

Q ss_pred             CcceeEEEEecceeEEE--e-cCeEEEEEcccceeee--eEe----ccCCCceeeeeecC---CCccEEEecCCCCeeEE
Q 018248           95 RSEVKNVRLRRDRIVVV--L-NQKVYVYNFTDLKLVD--QIE----TVVNPTGLCDVSQN---AGPMVMACPGLLKGQVR  162 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~--~~~----~~~~~~~~~~~~~~---~~~~~l~~~g~~d~~v~  162 (359)
                      -...+.++|.|+|.+++  . .|.|++++..+++...  .+.    .......-++++|+   +..+++..+...++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            34678999999998877  4 7899999865554321  111    11223456788885   34455554332334443


Q ss_pred             EEecCC---------eeeE---Eee-cccccccEEEEccCCcEEEEEeC-------------CCCeEEEEEcCCCc----
Q 018248          163 VEDYGT---------KKSK---YIT-AHASRIASIAMTLDGRFVATASS-------------KGTLIRVFNTMDGS----  212 (359)
Q Consensus       163 ~~~~~~---------~~~~---~~~-~~~~~i~~~~~s~~~~~l~~~~~-------------dg~~i~iwd~~~~~----  212 (359)
                      -+....         ....   .+. .....-..|+|.|||.+.++.+.             .|. |.-.+.. ++    
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~-IlRi~~d-G~ip~~  188 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK-ILRMTPD-GEPAPG  188 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC-EEEECTT-SSBCTT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE-EEEEeCC-CCccCC
Confidence            343332         1111   121 11223467999999987666542             244 4333432 22    


Q ss_pred             ----EEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCCC
Q 018248          213 ----LLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDS  256 (359)
Q Consensus       213 ----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~  256 (359)
                          ....+..+ + .....++|+|+|++.++=. .++.=.|-.+..+.
T Consensus       189 nPf~~~~i~a~G-~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~  235 (347)
T 3das_A          189 NPFPGSPVYSYG-H-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGD  235 (347)
T ss_dssp             CSSTTCCEEEBC-C-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTC
T ss_pred             CCCCCCeEEeeC-C-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCC
Confidence                01112212 2 2456899999987766532 33334444454443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.29  Score=40.33  Aligned_cols=110  Identities=10%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             ceeEEE--ecCeEEEEEcccceeeeeEeccC-CCceeeeee-c---CCCccEEEecCCCCeeEEEEecCCee-eEEeecc
Q 018248          106 DRIVVV--LNQKVYVYNFTDLKLVDQIETVV-NPTGLCDVS-Q---NAGPMVMACPGLLKGQVRVEDYGTKK-SKYITAH  177 (359)
Q Consensus       106 ~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~-~---~~~~~~l~~~g~~d~~v~~~~~~~~~-~~~~~~~  177 (359)
                      ++.+++  .||.|+-+|..+|+....++... .+.  +... +   .+... ++.....||.++..+..... ...+...
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~--~~~~~~~~~~~~~~-~vv~p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPL--IEIQEPSRLETYET-LIIEPFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCS--EECCCSCTTTSSEE-EEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCc--EEecCCccccCCcE-EEEEECCCCEEEEEECCCCcEEeeeccc
Confidence            344444  89999999999999999887641 111  1111 1   11222 33212468888886654432 2222111


Q ss_pred             cccc--cEEEEc-----------cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC
Q 018248          178 ASRI--ASIAMT-----------LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG  220 (359)
Q Consensus       178 ~~~i--~~~~~s-----------~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~  220 (359)
                       ..+  .-+...           ..+..+++|+.+|. +...|+++|+.+.++..+
T Consensus        87 -~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 -QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             -HHHTTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTT
T ss_pred             -cceeccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecC
Confidence             111  011111           14557789999999 999999999999998754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.77  E-value=0.04  Score=41.94  Aligned_cols=68  Identities=13%  Similarity=0.078  Sum_probs=42.3

Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE------EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL------LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      ..+..++|+|+|.+.++  .+|. ++-.+..+.+.      -..+-...- .....+.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEeccccc-ccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            47889999999986666  6666 66666544211      111110001 12468899999998887  5687765553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.66  E-value=1.8  Score=42.35  Aligned_cols=220  Identities=9%  Similarity=0.050  Sum_probs=115.9

Q ss_pred             CceEEEEEccCCCEEEEecCCceEEEEcCCCcce--eeeecccCCCCceeEEEEeccC------CEEEEEecCCCCCCeE
Q 018248            7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPI--MRRDFDRNPRGGTQLVSMLFRS------NIICLVNSGPHQSNKV   78 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~------~~~~~~~~~~~~d~~i   78 (359)
                      ..|.+.+.+.  .+++.+.++.+..++++.++..  ....+    ...+.++++.+.+      +.+++...   .|+++
T Consensus       514 ~~I~~As~n~--~~vvva~g~~l~~fel~~~~L~~~~~~~l----~~evscl~i~~~~~~~~~s~~~aVg~~---~d~tv  584 (1158)
T 3ei3_A          514 KNISVASCNS--SQVVVAVGRALYYLQIHPQELRQISHTEM----EHEVACLDITPLGDSNGLSPLCAIGLW---TDISA  584 (1158)
T ss_dssp             CCCCEEEECS--SEEEEEETTEEEEEEEETTEEEEEEEEEC----SSCEEEEECCCCSSSTTCCSEEEEEET---TTTEE
T ss_pred             CEEEEEEeCC--CEEEEEECCEEEEEEeeCCceeeecccCC----CCceEEEEeecCCCCcccccEEEEEEC---CCCEE
Confidence            3455555443  3555555566777777654322  22333    5678888887543      34555442   37999


Q ss_pred             EEEECCCccEEeeecc--CcceeEEEEec--ceeEEE---ecCeEEEEEc--ccceeeee--EeccCCCceeeeeecCCC
Q 018248           79 MIWDDHENRYLGELSF--RSEVKNVRLRR--DRIVVV---LNQKVYVYNF--TDLKLVDQ--IETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~~--~~~v~~~~~~~--~~~~~~---~d~~i~i~d~--~~~~~~~~--~~~~~~~~~~~~~~~~~~  147 (359)
                      +|+++.+.+.+.....  .....++.+..  ...++.   .||.+.-+.+  .+++....  ......++....+...+.
T Consensus       585 ~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~  664 (1158)
T 3ei3_A          585 RILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLST  664 (1158)
T ss_dssp             EEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSC
T ss_pred             EEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCc
Confidence            9999987766654442  22444554432  233333   6888766655  34433221  222344566555655554


Q ss_pred             ccEEEecCCCCeeEEEEecCCeeeEEeeccccccc-EEEEccC--CcEEEEEeCCCCeEEEEEcCCCc--EEEEeecCCC
Q 018248          148 PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA-SIAMTLD--GRFVATASSKGTLIRVFNTMDGS--LLQEMRRGAE  222 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~-~~~~s~~--~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~  222 (359)
                      ..++++ +  +.-..++..+++.... .-.-..+. ...|+..  ..-++..+ ++. ++|..+.+.+  .++.+..   
T Consensus       665 ~~V~a~-s--~rp~liy~~~~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~-LrI~~i~~~~~~~~~~ipL---  735 (1158)
T 3ei3_A          665 TNVFAC-S--DRPTVIYSSNHKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NST-LTIGTIDEIQKLHIRTVPL---  735 (1158)
T ss_dssp             EEEEEE-S--SSCEEEEESSSSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSC-EEEEEECCSSSEEEEEEEC---
T ss_pred             eeEEEE-C--CCCEEEEEcCCceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCc-eEEEEecccCCeeEEEEeC---
Confidence            445554 3  3333333333332211 11112232 3345432  12344333 456 8888875433  3444543   


Q ss_pred             CcceEEEEecCCCCEEEEEcCC
Q 018248          223 RAEIYSLAFSSNAQWLAASSDK  244 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~d  244 (359)
                      ...+..++++|+.+.++.+..+
T Consensus       736 ~~Tprri~y~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          736 YESPRKICYQEVSQCFGVLSSR  757 (1158)
T ss_dssp             SSEEEEEEEEGGGTEEEEEEEE
T ss_pred             CCCceEEEEcCCCCEEEEEEEe
Confidence            3578999999998877666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.63  E-value=0.68  Score=37.30  Aligned_cols=230  Identities=13%  Similarity=0.099  Sum_probs=108.3

Q ss_pred             cCCCEEEEec-C------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCc
Q 018248           16 QDHGCFATGT-E------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHEN   86 (359)
Q Consensus        16 ~~g~~l~~~~-d------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~   86 (359)
                      -++.+++.|+ .      ..+.+||..+.+-.....+.   ........... ++.+.+.++...  ....+.+||+.++
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT---RKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS---SCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC---hhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCC
Confidence            3556777776 3      35788888765433222222   11111112222 345555554211  2356899998887


Q ss_pred             c---EEeee--ccCcceeEEEEecceeEEE---e-----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           87 R---YLGEL--SFRSEVKNVRLRRDRIVVV---L-----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        87 ~---~~~~~--~~~~~v~~~~~~~~~~~~~---~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      +   ....-  .....-.++... ++.+++   .     ...+.+||+.+.+-...-..........+...+ +.+ ++.
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-~~i-yv~  165 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS-GVI-YCL  165 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET-TEE-EEE
T ss_pred             CCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEEC-CEE-EEE
Confidence            6   33322  221112223333 444444   1     247899998765432221111111111222223 333 344


Q ss_pred             cCCC----CeeEEEEecCCeeeEEeecccc-c-ccEEEEccCCcEEEEEeCC-----CCeEEEEEcCCCcEEEEeecCCC
Q 018248          154 PGLL----KGQVRVEDYGTKKSKYITAHAS-R-IASIAMTLDGRFVATASSK-----GTLIRVFNTMDGSLLQEMRRGAE  222 (359)
Q Consensus       154 ~g~~----d~~v~~~~~~~~~~~~~~~~~~-~-i~~~~~s~~~~~l~~~~~d-----g~~i~iwd~~~~~~~~~~~~~~~  222 (359)
                      .|..    ...+.+++.....-..+..... . -.+++ .-++++++.|+.+     .. +.+||+.+.+-...-.....
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~  243 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTP  243 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCC-EEEEETTTTEEEEECCCSSC
T ss_pred             CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccce-EEEEeCCCCcEEECCCCCCc
Confidence            2321    2346666665544333321111 1 11222 2366777777654     45 89999987765433211111


Q ss_pred             CcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          223 RAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      ......+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       244 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          244 RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            112222333  67777777755     357788887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.62  E-value=0.71  Score=37.43  Aligned_cols=211  Identities=9%  Similarity=-0.027  Sum_probs=112.2

Q ss_pred             EccCCCEEEEec---CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC----------CCCeEEE
Q 018248           14 LNQDHGCFATGT---ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH----------QSNKVMI   80 (359)
Q Consensus        14 ~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~----------~d~~i~i   80 (359)
                      |+++|..|....   ++.|...+.+.....   .+.   ...  +--+.++++.+.++.....          ....|+.
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~---~l~---~~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~   92 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIH---KLS---NDT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR   92 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCE---EEE---EEE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCE---Ecc---CCc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence            346777776654   344555555433322   221   222  3345678888888864310          1356777


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE--e---cC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L---NQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~---d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .++..++........    ...+++++..++  .   ++  .|+..++. +.....+..+..    .+++|+++.++...
T Consensus        93 i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~  163 (302)
T 3s25_A           93 IKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNN  163 (302)
T ss_dssp             EETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEETTEEEEEC
T ss_pred             EeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEe
Confidence            887666533222221    236677777666  3   23  45555553 333344433322    45688888754443


Q ss_pred             cCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC--CeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          154 PGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG--TLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                        .....|++-..++...+.+..  +... ..+.|++.+|+-....+  . |..-++.... ...+..    ..+  ..|
T Consensus       164 --~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~-I~~~~ldG~~-~~~Lt~----~~~--~~~  230 (302)
T 3s25_A          164 --PKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNA-IVHVNINNPN-PVVLTE----ANI--EHY  230 (302)
T ss_dssp             --TTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTE-EEEECSSSCC-CEECSC----SCE--EEE
T ss_pred             --CCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcE-EEEEECCCCC-eEEEeC----CCc--ceE
Confidence              245677776666655444432  2222 34669999887765443  3 5555654444 334432    233  347


Q ss_pred             cCCCCEEEEEcC--CCcEEEEEccC
Q 018248          232 SSNAQWLAASSD--KGTVHVFGLKV  254 (359)
Q Consensus       232 s~~~~~l~~~~~--dg~i~iw~~~~  254 (359)
                      +|++++|.-++.  .+.|..-+++.
T Consensus       231 ~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          231 NVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEETTEEEEEECSSSCEEEEEETTS
T ss_pred             EECCCEEEEEECCCCcEEEEEECCC
Confidence            888988876533  34455555544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.51  E-value=1.6  Score=40.65  Aligned_cols=236  Identities=9%  Similarity=0.004  Sum_probs=119.0

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccC------CCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRN------PRGGTQLVSMLFRSNIICLVNSGPHQSNKVM   79 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~   79 (359)
                      ...|.++.-..+|.+-+.. .+.+..++..+++......+..+      ....|.  ++..+.+..+.++.    ++-+.
T Consensus       323 ~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~--~i~~d~~g~lWigt----~~GL~  395 (758)
T 3ott_A          323 GNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR--HIYEDKEQQLWIAT----DGSIN  395 (758)
T ss_dssp             CCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE--EEEECTTSCEEEEE----TTEEE
T ss_pred             CceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceE--EEEECCCCCEEEEe----CCcHh
Confidence            3568888888888766544 34566666553221110111100      012234  34444444344442    36789


Q ss_pred             EEECCCccEEeee--c-----cCcceeEEEEecceeEEE-e-cCeEEEEEcccc-----eee---eeEeccC--CCceee
Q 018248           80 IWDDHENRYLGEL--S-----FRSEVKNVRLRRDRIVVV-L-NQKVYVYNFTDL-----KLV---DQIETVV--NPTGLC  140 (359)
Q Consensus        80 iwd~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~-----~~~---~~~~~~~--~~~~~~  140 (359)
                      .+|..+++...-.  .     ....|.++...+++.+.+ . .+-|.++|..+.     ...   ..+....  ....+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~  475 (758)
T 3ott_A          396 RYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFIN  475 (758)
T ss_dssp             EEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEE
T ss_pred             hcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceee
Confidence            9998776543321  1     123577888888777666 3 567899986431     111   1111111  111133


Q ss_pred             eeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248          141 DVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~  216 (359)
                      ++..+.++.+.+..+...|. ..++........+...    ...+.++....+|.+.+ |+.. . +..||..+++.. .
T Consensus       476 ~i~~d~~g~lWi~~~t~~Gl-~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-G-l~~~~~~~~~~~-~  550 (758)
T 3ott_A          476 QIIPDNEGNVWVLLYNNKGI-DKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-G-VMRINPKDESQQ-S  550 (758)
T ss_dssp             EEEECTTSCEEEEETTCSSE-EEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-E-EEEECC--CCCC-B
T ss_pred             eEEEcCCCCEEEEccCCCCc-EEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-c-eEEEecCCCceE-E
Confidence            34444444344311334564 4444444444444211    24567888888887654 4444 4 888987655432 1


Q ss_pred             ee-cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          217 MR-RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       217 ~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +. .+.....|.++... +|++. .++.+| |..+|.++.+
T Consensus       551 ~~~~gl~~~~i~~i~~~-~g~lW-i~t~~G-l~~~~~~~~~  588 (758)
T 3ott_A          551 ISFGSFSNNEILSMTCV-KNSIW-VSTTNG-LWIIDRKTMD  588 (758)
T ss_dssp             CCCCC---CCEEEEEEE-TTEEE-EEESSC-EEEEETTTCC
T ss_pred             ecccCCCccceEEEEEC-CCCEE-EECCCC-eEEEcCCCce
Confidence            11 11123467787764 66544 455666 7788877654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.31  E-value=0.65  Score=40.17  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=35.6

Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE--EEeecC----CCCcceEEEEecCC
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL--QEMRRG----AERAEIYSLAFSSN  234 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~--~~~~~~----~~~~~i~~~~~s~~  234 (359)
                      .....|+|.|+|+++++-...+. |++++..+++..  ..+...    ........|+|+|+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGK-ILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCE-EEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            34579999999997766544456 888876555432  222211    02356789999995

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.29  E-value=0.91  Score=36.59  Aligned_cols=229  Identities=13%  Similarity=0.126  Sum_probs=106.0

Q ss_pred             CCCEEEEec-C----CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEE
Q 018248           17 DHGCFATGT-E----TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYL   89 (359)
Q Consensus        17 ~g~~l~~~~-d----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~   89 (359)
                      ++.+++.|+ +    ..+.+||..+.+-.....+.   ........... ++.+.+.++...  .-..+.+||..+.+..
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP---SRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCS---SCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCC---cccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCcee
Confidence            455677776 4    35788888765433222222   11111111122 455555554221  1256889998877544


Q ss_pred             eeec--cCcceeEEEEecceeEEE--ec-----CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC---
Q 018248           90 GELS--FRSEVKNVRLRRDRIVVV--LN-----QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL---  157 (359)
Q Consensus        90 ~~~~--~~~~v~~~~~~~~~~~~~--~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---  157 (359)
                      ..-.  ....-.++....+..+++  .+     ..+.+||+.+.+-...-..........+... ++.+ ++..|..   
T Consensus        91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-yv~GG~~~~~  168 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLL-YAVGGYDVAS  168 (302)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEE-EEECCEETTT
T ss_pred             eCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEE-EEEeCCCCCC
Confidence            3322  221122333333333333  22     3678888866543222111111111111222 3333 3332321   


Q ss_pred             ---CeeEEEEecCCeeeEEeec---ccccccEEEEccCCcEEEEEeCC-----CCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248          158 ---KGQVRVEDYGTKKSKYITA---HASRIASIAMTLDGRFVATASSK-----GTLIRVFNTMDGSLLQEMRRGAERAEI  226 (359)
Q Consensus       158 ---d~~v~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~~i~iwd~~~~~~~~~~~~~~~~~~i  226 (359)
                         ...+.+++.....-..+..   .... .+++. -++++++.|+.+     .. +.+||+.+.+-...-.........
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~~~~r~~~  245 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGV-LNNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQVADMNMCRRNA  245 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCBSSSSBCCC-EEEEETTTTEEEEECCCSSCCBSC
T ss_pred             CccccEEEEEeCCCCcEEECCCCcccccc-ccEEE-ECCEEEEECCCCCCcccce-EEEEeCCCCCEeeCCCCCCccccC
Confidence               1235566655543333221   1111 12222 367777777654     35 899999877544322111111111


Q ss_pred             EEEEecCCCCEEEEEcCCC-----cEEEEEccCCC
Q 018248          227 YSLAFSSNAQWLAASSDKG-----TVHVFGLKVDS  256 (359)
Q Consensus       227 ~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~  256 (359)
                      ..+.+  ++++++.|+.++     .+.+||+++.+
T Consensus       246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            22222  677777777553     48888888754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.73  E-value=1.4  Score=35.72  Aligned_cols=230  Identities=10%  Similarity=0.044  Sum_probs=106.5

Q ss_pred             ccCCCEEEEec-C----CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecC----CC--CCCeEEEEEC
Q 018248           15 NQDHGCFATGT-E----TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG----PH--QSNKVMIWDD   83 (359)
Q Consensus        15 s~~g~~l~~~~-d----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~----~~--~d~~i~iwd~   83 (359)
                      .-++.+++.|+ +    ..+.+||..+.+-.....+.   ........... ++.+.+.++.    ..  ....+.+||+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQ---VPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCS---SCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCC---cccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            34667777776 3    35788888765433222222   11111111122 4555555542    10  1256889998


Q ss_pred             CCccEEeeec--cCcceeEEEEecceeEEE---e-----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248           84 HENRYLGELS--FRSEVKNVRLRRDRIVVV---L-----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        84 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .+++....-.  ....-.++... ++.+++   .     -..+.+||+.+.+-...-..........+... ++.+ ++.
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-yv~  174 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLL-YAV  174 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE-EEE
T ss_pred             CCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEE-EEE
Confidence            8775443322  11111223333 344443   1     24688899866543221111111111112222 3333 333


Q ss_pred             cCCC----CeeEEEEecCCeeeEEeec---ccccccEEEEccCCcEEEEEeCC-----CCeEEEEEcCCCcEEEEeecCC
Q 018248          154 PGLL----KGQVRVEDYGTKKSKYITA---HASRIASIAMTLDGRFVATASSK-----GTLIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       154 ~g~~----d~~v~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~~i~iwd~~~~~~~~~~~~~~  221 (359)
                      .|..    ...+.+++.....-..+..   .......+.+  ++++++.|+.+     .. +.+||+.+.+-...-....
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~  251 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTFVAPMKH  251 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEECCCCSS
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEECCCCCC
Confidence            2322    1345566655543333221   1111122222  67777777654     45 8999988775443211111


Q ss_pred             CCcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          222 ERAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       222 ~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      .......+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       252 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          252 RRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1111222222  67777777744     357788887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.57  E-value=1.7  Score=36.11  Aligned_cols=238  Identities=10%  Similarity=0.037  Sum_probs=118.3

Q ss_pred             ceEEEEEccCCC-EEEEecCCceEEEEcCCCcceeeeec---ccCCCCceeEEEEecc---CCEEEEEecCCCC----CC
Q 018248            8 TIHHLALNQDHG-CFATGTETGFRVYLSDPYKPIMRRDF---DRNPRGGTQLVSMLFR---SNIICLVNSGPHQ----SN   76 (359)
Q Consensus         8 ~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~---~~~~~~~~~~~~~----d~   76 (359)
                      ....|+|.|+|+ ++++-..+.|++++.+.........+   ..........++++++   ...+.+.......    ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            457899999999 66655588899888542111100111   0011234566777774   4444443211000    13


Q ss_pred             eEEEEECCCc--c--EEe----eecc----CcceeEEEEecceeEEE--ec--------------CeEEEEEcccce---
Q 018248           77 KVMIWDDHEN--R--YLG----ELSF----RSEVKNVRLRRDRIVVV--LN--------------QKVYVYNFTDLK---  125 (359)
Q Consensus        77 ~i~iwd~~~~--~--~~~----~~~~----~~~v~~~~~~~~~~~~~--~d--------------~~i~i~d~~~~~---  125 (359)
                      .|..+++..+  +  ...    .+..    ......+.|.|+|.+.+  .+              +.|.-++.. ++   
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~  177 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPD  177 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCC
Confidence            5666665432  1  111    1111    11246799999997666  22              456666653 22   


Q ss_pred             ----------eeeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-C-------------------------
Q 018248          126 ----------LVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-T-------------------------  168 (359)
Q Consensus       126 ----------~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~-------------------------  168 (359)
                                ....+. ++.+ ..-++|.+....++++-.+. ++.=.|.... +                         
T Consensus       178 ~npf~~~~~~~~~i~a~G~rn-p~gl~~d~~~g~l~~~d~g~-~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIRN-PQGMAMNPWSNALWLNEHGP-RGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCSE-EEEEEEETTTTEEEEEEECS-BSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCcCCCCCCccEEEEcCcC-ccceEEECCCCCEEEEecCC-CCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                      111221 2222 34567777444444433221 1111221110 0                         


Q ss_pred             ------eeeEEeecccccccEEEEcc-------CCcEEEEEeCCCCeEEEEEcCCCcEEEE--eecCCCCcceEEEEecC
Q 018248          169 ------KKSKYITAHASRIASIAMTL-------DGRFVATASSKGTLIRVFNTMDGSLLQE--MRRGAERAEIYSLAFSS  233 (359)
Q Consensus       169 ------~~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~~i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~s~  233 (359)
                            .+...+. +...+..++|..       +|.++++.-..+. |...++..++....  +... ....+..+++.|
T Consensus       256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~p  332 (353)
T 2g8s_A          256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTD-RGQRIRDVRTGP  332 (353)
T ss_dssp             SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGG-GCCCEEEEEECT
T ss_pred             CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccC-CCCceeEEEECC
Confidence                  0111122 123456677763       4666666555666 88888776654332  2111 224789999999


Q ss_pred             CCCEEEEEc-CCCcEEEEEcc
Q 018248          234 NAQWLAASS-DKGTVHVFGLK  253 (359)
Q Consensus       234 ~~~~l~~~~-~dg~i~iw~~~  253 (359)
                      ||.++++.. .+|  +||.+.
T Consensus       333 dG~lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          333 DGYLYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             TSCEEEEECSTTE--EEEEEE
T ss_pred             CCcEEEEEeCCCC--EEEEEe
Confidence            999766543 344  566553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.54  E-value=1.1  Score=34.17  Aligned_cols=148  Identities=14%  Similarity=0.019  Sum_probs=81.1

Q ss_pred             cceeEEEEecceeEEE-ecCeEEEEEccccee------eeeEec-cCCCceeeeeecCCCccEEEecCCCCeeEEEEecC
Q 018248           96 SEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKL------VDQIET-VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG  167 (359)
Q Consensus        96 ~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~  167 (359)
                      ..+..++|+|++.+.+ .+|.++-.+..+.+.      -..+-. .-+....+.+.+++  .+.++   .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G--~LYav---~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG--YLYAV---SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS--CEEEE---ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC--CEEEe---CCCEEEEeCCC
Confidence            3677999999998777 888877766544111      111110 11112445555555  34444   36888765432


Q ss_pred             C--e------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc------EEEEeecCCCCcceEEEEecC
Q 018248          168 T--K------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS------LLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       168 ~--~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~------~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      .  .      ....-..--..+..|.+.|+|.+.++.  |+. ++-....++.      ....+- ...-....-+.|.+
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g-~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIG-QGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEE-SSSGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc-EEecCCCCCCCcccccccceec-cCCcceEEEEEECC
Confidence            1  1      011111122467899999999877666  776 5433332211      111111 11122445577999


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCC
Q 018248          234 NAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++.+.++.  +|  ++|.....+
T Consensus       192 ~G~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          192 VGTLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             TSCEEEEE--TT--EEEEESCCC
T ss_pred             CCcEEEEe--CC--eEEecCCcc
Confidence            99887766  66  666665544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.51  E-value=1.5  Score=35.23  Aligned_cols=174  Identities=12%  Similarity=0.110  Sum_probs=81.4

Q ss_pred             CCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE--e-----cCeEEEEEcccce-----eeeeEeccCCCceee
Q 018248           75 SNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--L-----NQKVYVYNFTDLK-----LVDQIETVVNPTGLC  140 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~-----d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~  140 (359)
                      -..+.+||+.+++....-.  ....-.++....+..+++  .     -..+.+||+.+.+     .+..+..  ......
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~--~r~~~~  107 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV--RRGLAG  107 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS--CCBSCE
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC--Ccccee
Confidence            3578899988775443222  111112233333333333  1     2468999986654     2222211  111112


Q ss_pred             eeecCCCccEEEecCCC----CeeEEEEecCCeeeEEeecc-ccc-ccEEEEccCCcEEEEEeCC-----CCeEEEEEcC
Q 018248          141 DVSQNAGPMVMACPGLL----KGQVRVEDYGTKKSKYITAH-ASR-IASIAMTLDGRFVATASSK-----GTLIRVFNTM  209 (359)
Q Consensus       141 ~~~~~~~~~~l~~~g~~----d~~v~~~~~~~~~~~~~~~~-~~~-i~~~~~s~~~~~l~~~~~d-----g~~i~iwd~~  209 (359)
                      +... ++.+ ++..|..    ...+.+++.....-..+... ... -.+++. .++++++.|+.+     .. +.+||+.
T Consensus       108 ~~~~-~~~l-yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~-~~~~d~~  183 (301)
T 2vpj_A          108 ATTL-GDMI-YVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNS-VEKYDPH  183 (301)
T ss_dssp             EEEE-TTEE-EEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCC-EEEEETT
T ss_pred             EEEE-CCEE-EEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccce-EEEEeCC
Confidence            2222 3333 3432321    13456666555333332211 111 112222 367777777654     35 8899988


Q ss_pred             CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      +.+-...-...........+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       184 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          184 TGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            7764433211111111222333  56777777654     358888887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.98  E-value=1.6  Score=38.38  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=58.5

Q ss_pred             CceEEEEEccCCCEEEEec--CCceEEEEcCCCcc-----------eeeeecccCCCCceeEEEEeccCCEEEEEecCCC
Q 018248            7 ITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKP-----------IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH   73 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~   73 (359)
                      .....+..+|||+++++++  +.++.+++++....           ......+    -...-+...++++..++.+--  
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~GlGPlHt~Fd~~G~aYTtlf--  396 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----LGLGPLHTTFDGRGNAYTTLF--  396 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----CCSCEEEEEECSSSEEEEEET--
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----CCCcccEEEECCCCceEeeee--
Confidence            4456788999999998887  89999999874211           1112221    222333344455555555543  


Q ss_pred             CCCeEEEEECCCc----------cEEeeeccCcceeEEEE------ecceeEEE
Q 018248           74 QSNKVMIWDDHEN----------RYLGELSFRSEVKNVRL------RRDRIVVV  111 (359)
Q Consensus        74 ~d~~i~iwd~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~~~  111 (359)
                      -|..|.-|++...          ..+..+....++-.+..      .|+|++++
T Consensus       397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred             ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence            5799999998653          34444543333333333      45777776

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.65  E-value=2.6  Score=34.84  Aligned_cols=22  Identities=5%  Similarity=0.048  Sum_probs=13.9

Q ss_pred             CCEEEEEecCCCCCCeEEEEECCC
Q 018248           62 SNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus        62 ~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ++.+.+.++.  ....+.++|+.+
T Consensus        19 ~~~iyv~GG~--~~~~~~~~d~~~   40 (357)
T 2uvk_A           19 NDTVYIGLGS--AGTAWYKLDTQA   40 (357)
T ss_dssp             TTEEEEECGG--GTTCEEEEETTS
T ss_pred             CCEEEEEeCc--CCCeEEEEcccc
Confidence            4555555543  246799999864

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.53  E-value=2.4  Score=34.11  Aligned_cols=187  Identities=9%  Similarity=0.079  Sum_probs=88.3

Q ss_pred             CEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE--e----cCeEEEEEcccceeeeeEeccC
Q 018248           63 NIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--L----NQKVYVYNFTDLKLVDQIETVV  134 (359)
Q Consensus        63 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~  134 (359)
                      +.+++.++.. ....+.+||..+++....-.  ....-.++....+..+++  .    -..+.+||+.+.+-...-....
T Consensus        12 ~~l~~~GG~~-~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           12 DYRIALFGGS-QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             CEEEEEECCS-STTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             ceEEEEeCCC-CCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            4566666543 35789999988876443322  111112233333333333  2    2578899987664322211111


Q ss_pred             CCceeeeeecCCCccEEEecCCC-----CeeEEEEecCCeeeEEeeccc-c-cccEEEEccCCcEEEEEeC---------
Q 018248          135 NPTGLCDVSQNAGPMVMACPGLL-----KGQVRVEDYGTKKSKYITAHA-S-RIASIAMTLDGRFVATASS---------  198 (359)
Q Consensus       135 ~~~~~~~~~~~~~~~~l~~~g~~-----d~~v~~~~~~~~~~~~~~~~~-~-~i~~~~~s~~~~~l~~~~~---------  198 (359)
                      ......+... ++.+ ++..|..     ...+.+++.....-..+.... . .-.+++. -++++++.|+.         
T Consensus        91 ~r~~~~~~~~-~~~i-yv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           91 PRDSLAACAA-EGKI-YTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CCBSCEEEEE-TTEE-EEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             cccceeEEEE-CCEE-EEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            1111122222 3333 4443422     134666666554433332111 1 1112222 36676666653         


Q ss_pred             CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      -.. +.+||..+.+-...-........-..+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          168 LNS-CEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CCC-EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             cce-EEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            345 88999888754432211111111222223  66777777643     357888887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.46  E-value=2.8  Score=34.63  Aligned_cols=227  Identities=9%  Similarity=0.006  Sum_probs=114.8

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecc---cCCCCceeEEEEecc---CCEEEEE-ecCCCCCCeE
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFD---RNPRGGTQLVSMLFR---SNIICLV-NSGPHQSNKV   78 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~---~~~~~~~-~~~~~~d~~i   78 (359)
                      ..-+.|+|.|||+++++-. .|.|++++.+.++......+.   .........++++|+   ...+.+. +..  .++.|
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~--~~~~v  109 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA--SDNRI  109 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS--SSEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC--CCCEE
Confidence            3457899999999998888 888999876554432222211   012344566777764   3334332 211  24566


Q ss_pred             EEEECCCc----------cEE-eeec--cCcceeEEEEecceeEEE--e--------------cCeEEEEEccccee---
Q 018248           79 MIWDDHEN----------RYL-GELS--FRSEVKNVRLRRDRIVVV--L--------------NQKVYVYNFTDLKL---  126 (359)
Q Consensus        79 ~iwd~~~~----------~~~-~~~~--~~~~v~~~~~~~~~~~~~--~--------------d~~i~i~d~~~~~~---  126 (359)
                      .-|....+          +.+ ..+.  ....-..+.|.|+|.+.+  .              .+.|.-.+.. ++.   
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~  188 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPG  188 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTT
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCC
Confidence            66665441          111 1122  112345699999997666  2              2445444542 220   


Q ss_pred             -----eeeE-eccCCCceeeeeecCCCccEEEecCCCCeeEEEEe-cCC------------------eeeEEeecccccc
Q 018248          127 -----VDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED-YGT------------------KKSKYITAHASRI  181 (359)
Q Consensus       127 -----~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~-~~~------------------~~~~~~~~~~~~i  181 (359)
                           ...+ .++.++ .-++|.|++. ++++-.| .++.-.|.. ..+                  .++..+..+....
T Consensus       189 nPf~~~~i~a~G~RNp-~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap  265 (347)
T 3das_A          189 NPFPGSPVYSYGHRNV-QGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP  265 (347)
T ss_dssp             CSSTTCCEEEBCCSBC-CEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred             CCCCCCeEEeeCCCCc-ceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence                 1111 233333 3467777543 3333222 232222211 111                  1122222222344


Q ss_pred             cEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE---EEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248          182 ASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL---QEMRRGAERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      ..++|. +|.++...-..+. |....+.....+   ..+..+ ....+..++..|||.++++..
T Consensus       266 ~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          266 SGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred             cceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence            567775 4555555555555 666666544321   122211 236799999999998776654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.40  E-value=2.6  Score=34.04  Aligned_cols=175  Identities=8%  Similarity=0.022  Sum_probs=79.5

Q ss_pred             CCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE--e----c-----CeEEEEEcccceeeeeEeccCCCceeee
Q 018248           75 SNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--L----N-----QKVYVYNFTDLKLVDQIETVVNPTGLCD  141 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~----d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (359)
                      -..+.+||..+++....-.  ....-.++....+..+++  .    +     ..+.+||+.+.+-...-..........+
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            3578999988776443322  111112233333333333  2    1     3588888866542221111111111112


Q ss_pred             eecCCCccEEEecCCCC----eeEEEEecCCeeeEEeec---ccccccEEEEccCCcEEEEEeCC-----CCeEEEEEcC
Q 018248          142 VSQNAGPMVMACPGLLK----GQVRVEDYGTKKSKYITA---HASRIASIAMTLDGRFVATASSK-----GTLIRVFNTM  209 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d----~~v~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----g~~i~iwd~~  209 (359)
                      ...+ +.+ ++..|...    ..+.+++.....-..+..   ....-..+.+  ++++++.|+.+     .. +.+||+.
T Consensus       118 ~~~~-~~i-yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~  192 (308)
T 1zgk_A          118 GVID-GHI-YAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNS-AECYYPE  192 (308)
T ss_dssp             EEET-TEE-EEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCC-EEEEETT
T ss_pred             EEEC-CEE-EEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCce-EEEEeCC
Confidence            2222 333 33323211    245555555433333221   1111122222  66777777654     35 8899987


Q ss_pred             CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      +.+-...-........-..+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       193 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          193 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            7654322111111112222333  67777777654     458888887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.39  E-value=2.6  Score=33.96  Aligned_cols=229  Identities=9%  Similarity=0.072  Sum_probs=106.9

Q ss_pred             CCEEEEec-C--CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEEECCCccEEeeec
Q 018248           18 HGCFATGT-E--TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIWDDHENRYLGELS   93 (359)
Q Consensus        18 g~~l~~~~-d--~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~   93 (359)
                      +.+++.|+ +  ..+.+||..+.+-.....+.   ........... ++.+.+.++... .-..+.+||+.+++....-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPF---EKRRDAACVFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCS---CCCBSCEEEEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCC---cccceeEEEEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            34556666 3  56888888765433222222   11111111222 444555554210 23678999988875443322


Q ss_pred             --cCcceeEEEEecceeEEE--ec------CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC------
Q 018248           94 --FRSEVKNVRLRRDRIVVV--LN------QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL------  157 (359)
Q Consensus        94 --~~~~v~~~~~~~~~~~~~--~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~------  157 (359)
                        ....-.++....+..+++  .+      ..+.+||..+.+-...-..........+... ++.++ +..|..      
T Consensus        88 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iy-v~GG~~~~~~~~  165 (306)
T 3ii7_A           88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIY-VCGGSLGNNVSG  165 (306)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEE-EECCEESCTTTC
T ss_pred             CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEE-EECCCCCCCCcc
Confidence              111112233333333333  22      4688999876543222111111111112222 33333 332321      


Q ss_pred             --CeeEEEEecCCeeeEEeecccc--cccEEEEccCCcEEEEEeCC-----CCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248          158 --KGQVRVEDYGTKKSKYITAHAS--RIASIAMTLDGRFVATASSK-----GTLIRVFNTMDGSLLQEMRRGAERAEIYS  228 (359)
Q Consensus       158 --d~~v~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d-----g~~i~iwd~~~~~~~~~~~~~~~~~~i~~  228 (359)
                        ...+.+++.....-..+.....  .-.+++. -++++++.|+.+     .. +.+||+.+.+-...-...........
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCC-EEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCce-EEEeeCCCCcEEECCCCCCCccceeE
Confidence              2345566665544333322111  1112222 266777776643     35 89999887654322111111112233


Q ss_pred             EEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          229 LAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      +.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            333  67788888754     457888887754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.55  E-value=5.3  Score=35.33  Aligned_cols=73  Identities=10%  Similarity=0.059  Sum_probs=53.7

Q ss_pred             ccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCC------c-------EEEEeecCCCCcceEEEEecCCCCEEEEEcCC
Q 018248          179 SRIASIAMTLDGRFVATASS-KGTLIRVFNTMDG------S-------LLQEMRRGAERAEIYSLAFSSNAQWLAASSDK  244 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~------~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  244 (359)
                      .....+.++|||+++++++. +.+ +.++|++..      +       ...+.+.   .-.....+|.++|.-..+.--|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLspt-vtV~d~~k~~~~~~~k~~~~~~~~~ae~e~---GlGPlHt~Fd~~G~aYTtlfid  398 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPT-CSMIAIDKLPDLFAGKLADPRDVIVGEPEL---GLGPLHTTFDGRGNAYTTLFID  398 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHHTTCCSCGGGGEEECCBC---CSCEEEEEECSSSEEEEEETTT
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCe-EEEEEeehhhhhhhccccCcccceEeeccC---CCcccEEEECCCCceEeeeeec
Confidence            34567899999999887764 566 999998741      1       1333332   2367889999999666677789


Q ss_pred             CcEEEEEccCC
Q 018248          245 GTVHVFGLKVD  255 (359)
Q Consensus       245 g~i~iw~~~~~  255 (359)
                      ..|.-|++...
T Consensus       399 SqvvkWni~~a  409 (638)
T 3sbq_A          399 SQVVKWNMEEA  409 (638)
T ss_dssp             TEEEEEEHHHH
T ss_pred             ceEEEEeccHH
Confidence            99999999763

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.13  E-value=4.5  Score=33.57  Aligned_cols=192  Identities=12%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc-EEeeec----cCcceeEEEEecc----eeEEE--e----c---
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR-YLGELS----FRSEVKNVRLRRD----RIVVV--L----N---  113 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~----~~~~v~~~~~~~~----~~~~~--~----d---  113 (359)
                      ....+++.+++. ++++.    .++.|++++ .+++ .+..+.    .......++++|+    +.+.+  .    +   
T Consensus        30 ~P~~ia~~pdG~-l~V~e----~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTE----RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CEEEEEEEETTE-EEEEE----TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCeEEEEcCCCe-EEEEe----CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            345667777665 33333    458999987 4554 222221    2346789999997    54444  3    2   


Q ss_pred             -CeEEEEEcccc-------eee-eeEec-cCCCceeeeeecCCCccEEEecCCC------------CeeEEEEecCCee-
Q 018248          114 -QKVYVYNFTDL-------KLV-DQIET-VVNPTGLCDVSQNAGPMVMACPGLL------------KGQVRVEDYGTKK-  170 (359)
Q Consensus       114 -~~i~i~d~~~~-------~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~------------d~~v~~~~~~~~~-  170 (359)
                       +.|..|+....       +.+ ..+.. ..+....++|.|++. ++++. |..            .|.|.-.+.++.. 
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~-G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITT-GDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEEC-CCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEE-CCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence             57777876443       111 11221 112335688888874 45443 421            2344444444431 


Q ss_pred             --------eEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCCc------------------EEEEeecCCCC
Q 018248          171 --------SKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDGS------------------LLQEMRRGAER  223 (359)
Q Consensus       171 --------~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~~------------------~~~~~~~~~~~  223 (359)
                              .....++. ....++|+| +|++.++-......=.|.-+..+.                  ++..+. . ..
T Consensus       182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~-~~  258 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-S-ET  258 (354)
T ss_dssp             TTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-T-CC
T ss_pred             CCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-C-CC
Confidence                    11122333 356899999 666554432221101122222221                  122221 1 12


Q ss_pred             cceEEEEec-------CCCCEEEEEcCCCcEEEEEccC
Q 018248          224 AEIYSLAFS-------SNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       224 ~~i~~~~~s-------~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      .....++|.       .+|+++++.-..+.|...+++.
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            357788883       4677777666667777777764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.64  E-value=5  Score=33.10  Aligned_cols=50  Identities=18%  Similarity=0.141  Sum_probs=25.7

Q ss_pred             EEEEEcCCCcE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCC------cEEEEEccCCC
Q 018248          203 IRVFNTMDGSL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKG------TVHVFGLKVDS  256 (359)
Q Consensus       203 i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~iw~~~~~~  256 (359)
                      +.+||+.+.+-  +..+..  ....-.++.  .++++++.|+.++      .|.++++++++
T Consensus       287 ~~~yd~~~~~W~~~~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          287 TDIHLWHNGKWDKSGELSQ--GRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             CEEEECC---CEEEEECSS--CCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             EEEEecCCCceeeCCCCCC--CcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            78899876543  333332  111222232  3678888888543      35566777765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.52  E-value=4.7  Score=32.58  Aligned_cols=66  Identities=6%  Similarity=0.054  Sum_probs=36.8

Q ss_pred             cCCcEEEEEeC-C-----CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC-----cEEEEEccCCC
Q 018248          188 LDGRFVATASS-K-----GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG-----TVHVFGLKVDS  256 (359)
Q Consensus       188 ~~~~~l~~~~~-d-----g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~  256 (359)
                      .++++++.|+. +     .. +.+||..+.+-...-........-..+.+  ++++++.|+.++     .+.+||+.+.+
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNK-MCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCC-EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             ECCEEEEEeCCCCCCcccce-EEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            46677777765 2     35 89999887654322111101111222223  677777777554     47778877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.26  E-value=5.6  Score=32.95  Aligned_cols=96  Identities=10%  Similarity=0.043  Sum_probs=50.8

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE---eeec-----cCcceeEEEEecc----eeEEE---e----
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL---GELS-----FRSEVKNVRLRRD----RIVVV---L----  112 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~---~~~~-----~~~~v~~~~~~~~----~~~~~---~----  112 (359)
                      ....+++.++++.++++.    ..+.|++++. .++..   ..+.     .......++++|+    +.+.+   .    
T Consensus        19 ~P~~i~~~pdG~~l~V~e----~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITL----RGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SEEEEEECSTTCCEEEEE----TTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CcEEEEEcCCCCEEEEEe----CCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            345677777776444444    4589999984 33322   1111     2345688999994    44444   2    


Q ss_pred             ---cCeEEEEEcccc----eeeee-Eec------cCCCceeeeeecCCCccEEEe
Q 018248          113 ---NQKVYVYNFTDL----KLVDQ-IET------VVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus       113 ---d~~i~i~d~~~~----~~~~~-~~~------~~~~~~~~~~~~~~~~~~l~~  153 (359)
                         ...|..+++...    ..... +..      ..+....++|.|++ .++++.
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~  147 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIAL  147 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEE
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEE
Confidence               235666666322    11111 111      11223468888887 455554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.79  E-value=6.6  Score=31.40  Aligned_cols=175  Identities=12%  Similarity=0.101  Sum_probs=79.1

Q ss_pred             CeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE--e-----cCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           76 NKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--L-----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      ..+..||+.+.+....-.  ....-.++....+..+++  .     -..+.+||..+.+-...-..........+... +
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~  108 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N  108 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C
Confidence            568889988775433222  111112233333333333  1     24688899866543221111111111112222 3


Q ss_pred             CccEEEecCCCC----eeEEEEecCCeeeEEeecccc--cccEEEEccCCcEEEEEeC-------CCCeEEEEEcCCCcE
Q 018248          147 GPMVMACPGLLK----GQVRVEDYGTKKSKYITAHAS--RIASIAMTLDGRFVATASS-------KGTLIRVFNTMDGSL  213 (359)
Q Consensus       147 ~~~~l~~~g~~d----~~v~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~-------dg~~i~iwd~~~~~~  213 (359)
                      +.++++ .|...    ..+.+++.....-..+.....  .-.+++. -++++++.|+.       -.. +.+||+.+.+-
T Consensus       109 ~~iyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~-~~~yd~~~~~W  185 (302)
T 2xn4_A          109 GLLYAV-GGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLST-VECYNATTNEW  185 (302)
T ss_dssp             TEEEEE-EEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCC-EEEEETTTTEE
T ss_pred             CEEEEE-cCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccE-EEEEeCCCCcE
Confidence            333333 23221    234455555443333321111  1112222 36666666654       235 88999887754


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      ...-...........+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       186 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            432211111112222233  67777777654     357888887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.29  E-value=10  Score=32.83  Aligned_cols=55  Identities=15%  Similarity=0.236  Sum_probs=34.6

Q ss_pred             ccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCC---cEEEEeecC-------CCCcceEEEEecCC
Q 018248          179 SRIASIAMTLDGR-FVATASSKGTLIRVFNTMDG---SLLQEMRRG-------AERAEIYSLAFSSN  234 (359)
Q Consensus       179 ~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~---~~~~~~~~~-------~~~~~i~~~~~s~~  234 (359)
                      ...+.|+|.|||. .|+++...|. |++++....   +.+..+...       ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~-i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGY-VKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTE-EEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCce-EEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3457899999996 4555667888 999974322   122222210       01356889999996

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.07  E-value=9.2  Score=30.82  Aligned_cols=226  Identities=13%  Similarity=0.102  Sum_probs=101.4

Q ss_pred             EEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecC-----CC---CCCeEEEEECCCccEEeee
Q 018248           21 FATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG-----PH---QSNKVMIWDDHENRYLGEL   92 (359)
Q Consensus        21 l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----~~---~d~~i~iwd~~~~~~~~~~   92 (359)
                      ++.|+ ..+.+||..+.+-.. ..+. .............++ .+.+.++.     ..   ....+..||..+++....-
T Consensus         8 ~~~GG-~~~~~yd~~~~~W~~-~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            8 FMISE-EGAVAYDPAANECYC-ASLS-SQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEET-TEEEEEETTTTEEEE-EECC-CCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEcC-CceEEECCCCCeEec-CCCC-CCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            34454 578899988765432 2321 111222222333344 44444431     10   1123788898887643322


Q ss_pred             ccC--cceeEEEEecceeEEE--ec--------CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC--
Q 018248           93 SFR--SEVKNVRLRRDRIVVV--LN--------QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK--  158 (359)
Q Consensus        93 ~~~--~~v~~~~~~~~~~~~~--~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--  158 (359)
                      ..+  ..-.++....+..+++  .+        ..+.+||..+.+-...-..+.......+... ++.+ ++..|..+  
T Consensus        84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-yv~GG~~~~~  161 (315)
T 4asc_A           84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH-MDLV-YVIGGKGSDR  161 (315)
T ss_dssp             CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE-EEECCBCTTS
T ss_pred             CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE-CCEE-EEEeCCCCCC
Confidence            211  1112233333333333  11        4588999876542211111111111222222 3333 34434311  


Q ss_pred             ---eeEEEEecCCeeeEEeeccc-cc-ccEEEEccCCcEEEEEeCCC-----CeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248          159 ---GQVRVEDYGTKKSKYITAHA-SR-IASIAMTLDGRFVATASSKG-----TLIRVFNTMDGSLLQEMRRGAERAEIYS  228 (359)
Q Consensus       159 ---~~v~~~~~~~~~~~~~~~~~-~~-i~~~~~s~~~~~l~~~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~~i~~  228 (359)
                         ..+.+++.....-..+.... .. -.+++ .-++++++.|+.++     . +.+||+.+.+-...-...........
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSS-AEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEE-EEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccce-EEEEECCCCeEEECCCCCCcccceeE
Confidence               34566665554333332111 11 11222 23677777777543     4 78899887754433221111112222


Q ss_pred             EEecCCCCEEEEEcCCC--------------cEEEEEccCCC
Q 018248          229 LAFSSNAQWLAASSDKG--------------TVHVFGLKVDS  256 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~  256 (359)
                      +.+  ++++++.|+.++              .+.+||+++.+
T Consensus       240 ~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          240 VSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            333  667777777532              36677877654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.63  E-value=7.6  Score=37.21  Aligned_cols=40  Identities=10%  Similarity=0.080  Sum_probs=32.9

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeec
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDF   45 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~   45 (359)
                      ...|.+++..++..++.+-+ |+++|+|++.+++......+
T Consensus       235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            45688888889989987777 99999999998877665554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=82.16  E-value=18  Score=29.08  Aligned_cols=66  Identities=14%  Similarity=0.191  Sum_probs=36.4

Q ss_pred             cCCcEEEEEeC------CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-----CcEEEEEccCCC
Q 018248          188 LDGRFVATASS------KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-----GTVHVFGLKVDS  256 (359)
Q Consensus       188 ~~~~~l~~~~~------dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  256 (359)
                      .++++++.|+.      -.. +.+||..+.+-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNR-VFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCC-EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCCCCCccce-EEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            46777777753      235 89999887764432211111111222222  66777777643     246778877654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.90  E-value=7.1  Score=34.91  Aligned_cols=58  Identities=14%  Similarity=0.207  Sum_probs=40.4

Q ss_pred             cEEEEccCCcEEEEEeCC------------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE
Q 018248          182 ASIAMTLDGRFVATASSK------------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS  241 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~d------------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  241 (359)
                      -.|+|+|.|.+++.-..+            .. +.+.+..+++..+-+... ..+.++.++|+||++.|+..
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~-~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQ-MLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCE-EEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccce-EEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence            568999999966554322            12 555666667766555543 56799999999999887764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.64  E-value=9  Score=36.72  Aligned_cols=38  Identities=11%  Similarity=0.126  Sum_probs=32.4

Q ss_pred             cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                      .+.+++..++..++++-+.|++ +|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeec
Confidence            4566777788889999999999 9999999999888753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=80.40  E-value=25  Score=29.47  Aligned_cols=164  Identities=8%  Similarity=0.039  Sum_probs=88.2

Q ss_pred             CeEEEEECCCc--cEEeeeccC-------cceeEEEEe---cc----eeEEE----ecCeEEEEEcccceeeeeEecc--
Q 018248           76 NKVMIWDDHEN--RYLGELSFR-------SEVKNVRLR---RD----RIVVV----LNQKVYVYNFTDLKLVDQIETV--  133 (359)
Q Consensus        76 ~~i~iwd~~~~--~~~~~~~~~-------~~v~~~~~~---~~----~~~~~----~d~~i~i~d~~~~~~~~~~~~~--  133 (359)
                      -+|.+||+.++  +.++.+..+       ..+..+++.   |.    +.++.    ....|.++|+.+++.-+.+...  
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~  202 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK  202 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence            47999999999  999888632       346778877   22    22322    5678999999887765544211  


Q ss_pred             ----------------CCCceeeeeecC----CCccEEEecCCCCeeEEEE---ecCC---eeeEEeecccc---cccEE
Q 018248          134 ----------------VNPTGLCDVSQN----AGPMVMACPGLLKGQVRVE---DYGT---KKSKYITAHAS---RIASI  184 (359)
Q Consensus       134 ----------------~~~~~~~~~~~~----~~~~~l~~~g~~d~~v~~~---~~~~---~~~~~~~~~~~---~i~~~  184 (359)
                                      ...+..++++|+    ++.+++.. -+....-+|-   ..+.   ..++.+ +.++   .-..+
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p-lss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~  280 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA-GSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIAL  280 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE-SSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE-CCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceE
Confidence                            112344566665    33333332 2112222221   1111   112222 2222   22345


Q ss_pred             EEc-cCCcEEEEEeCCCCeEEEEEcCC-C---cEEEEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248          185 AMT-LDGRFVATASSKGTLIRVFNTMD-G---SLLQEMRRGAERAEIYSLAFSSNAQWLAASS  242 (359)
Q Consensus       185 ~~s-~~~~~l~~~~~dg~~i~iwd~~~-~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  242 (359)
                      ++. .+|.++++--.... |..|+..+ .   +....+.....-..+..+.+.++|.+.+..+
T Consensus       281 ~~D~~~G~ly~~~~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          281 AYDPKTKVIFFAEANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EECTTTCEEEEEESSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EEeCCCCeEEEEeccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            665 57776666666777 99999765 1   1222332211234577777777776555543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.29  E-value=28  Score=30.07  Aligned_cols=105  Identities=10%  Similarity=0.062  Sum_probs=57.0

Q ss_pred             ceeeeeecCCCccEEEecCCCCeeEEEEecCCe----eeEEee---------cccccccEEEEccC----CcEEEEEeC-
Q 018248          137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK----KSKYIT---------AHASRIASIAMTLD----GRFVATASS-  198 (359)
Q Consensus       137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~----~~~~~~---------~~~~~i~~~~~s~~----~~~l~~~~~-  198 (359)
                      ...+++.|++...++++.  ..|.|++.+.++.    .+..+.         ........|+|+|+    +.+.++-+. 
T Consensus        16 P~~~a~~pdG~~rl~V~e--r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILE--KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             EEEEECCSSSSCCEEEEE--TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             ceEEEECCCCCeEEEEEe--CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            356788888863334432  5788888755432    122221         11356788999996    443333221 


Q ss_pred             -C----------CCeEEEEEcCC----------CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC
Q 018248          199 -K----------GTLIRVFNTMD----------GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK  244 (359)
Q Consensus       199 -d----------g~~i~iwd~~~----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  244 (359)
                       +          .. |.-|.+..          .+.+..+........-..|+|.|||.+.++.++.
T Consensus        94 ~~~~~~~~~~~~~~-v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILR-VVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEE-EEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceE-EEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          13 44465532          1233333311112246889999999887776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 2e-12
 Identities = 27/179 (15%), Positives = 63/179 (35%), Gaps = 5/179 (2%)

Query: 73  HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIET 132
           H+    M+  + +   +   S    V+   +        L +  +V             +
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201

Query: 133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGR 191
           +   TG  +  ++  P      G     +++ D  T      +  H + +  +     G+
Sbjct: 202 ISEATG-SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 260

Query: 192 FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
           F+ + +   T +RV++  +   ++ +   A    + SL F   A ++   S   TV V+
Sbjct: 261 FILSCADDKT-LRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 5/156 (3%)

Query: 52  GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV 111
            T  V ++        +    H    +    +     + E +     K+ +     +   
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS 171
            ++ + +++ +    +  +    N           G  +++C       +RV DY  K+ 
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG-GKFILSCAD--DKTLRVWDYKNKRC 281

Query: 172 KY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVF 206
              + AH   + S+       +V T S   T ++V+
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 3/167 (1%)

Query: 174 ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS 233
           ++ H S +  +        + +AS   T I+V++   G   + ++       +  ++F  
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDAT-IKVWDYETGDFERTLK--GHTDSVQDISFDH 69

Query: 234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY 293
           + + LA+ S   T+ ++  +                      N   I S    + +    
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 294 FSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMK 340
             + + +  F        +V   +    I     D +         +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 33/266 (12%), Positives = 79/266 (29%), Gaps = 29/266 (10%)

Query: 9   IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV 68
           +  +  +       + +E    + + D       R      +G T  V  +   +   L+
Sbjct: 20  VTRVIFHPVFSVMVSASEDA-TIKVWDYETGDFERTL----KGHTDSVQDISFDHSGKLL 74

Query: 69  NSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVD 128
            S        +                  V +V +  +   +V   +       +++   
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-ITAHASRIASIAMT 187
            ++T         + +      +         VRV    TK+ K  +  H   +  I+  
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194

Query: 188 LD--------------------GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY 227
            +                    G F+ + S   T I++++   G  L  +        + 
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTLV--GHDNWVR 251

Query: 228 SLAFSSNAQWLAASSDKGTVHVFGLK 253
            + F S  +++ + +D  T+ V+  K
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYK 277

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 27/242 (11%), Positives = 65/242 (26%), Gaps = 8/242 (3%)

Query: 9   IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV 68
           I    L  D      G E                +    +       +++   S +    
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159

Query: 69  NSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVD 128
            S  + +   +       ++ G     S +             L+  V  ++  + + + 
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219

Query: 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL 188
           Q +       L          V          V V          +  H S + S+    
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESS----NVEVLHVNKPDKYQLHLHESCVLSLKFAY 275

Query: 189 DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH 248
            G++  +       +  + T  G+ + + +   E + + S   S + +++   S      
Sbjct: 276 CGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKAT 331

Query: 249 VF 250
           V+
Sbjct: 332 VY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG---SLLQEMRRGAERAEIYSLAFSS 233
           H   + ++ ++   R V T       ++V++       S + ++        I S     
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKGC--VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 234 NAQWLAASSDKGTVH 248
           +   L    +  T+ 
Sbjct: 108 DGCTLIVGGEASTLS 122

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM 209
             +         S + +  +S + S  +++D +++ T S       V+  +
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA 240
             S  +T DG+          LI           +++        + ++  S+  + +  
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHA---RQINTLNHGEVVCAVTISNPTRHVYT 68

Query: 241 SSDKGTVHVF 250
               G V V+
Sbjct: 69  GGK-GCVKVW 77

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 7/78 (8%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 173 YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232
           Y +     I+  A   D   +A   +    + ++       +Q         ++  + ++
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 233 SNAQWLAASSDKGTVHVF 250
            ++  +         +V+
Sbjct: 61  PDSNRIVTCGTDRNAYVW 78

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 9/138 (6%), Positives = 32/138 (23%), Gaps = 3/138 (2%)

Query: 113 NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK 172
           +    +++  +           +         N                 +       + 
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264

Query: 173 YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232
                   I S++ +  GR +           V++ +       +        +  L  +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA--GHDNRVSCLGVT 321

Query: 233 SNAQWLAASSDKGTVHVF 250
            +   +A  S    + ++
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 43/262 (16%), Positives = 76/262 (29%), Gaps = 7/262 (2%)

Query: 9   IHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV 68
           I+ +    D     + ++ G ++ + D Y                   +     N +   
Sbjct: 58  IYAMHWGTDSRLLVSASQDG-KLIIWDSYTTNKVHAIPLRSSWVMT-CAYAPSGNYVACG 115

Query: 69  NSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVD 128
                 S   +   +   R   EL+  +   +     D   +V +         D++   
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-ITAHASRIASIAMT 187
           Q  T    TG       A    +   G      ++ D      +   T H S I +I   
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV 247
            +G   AT S   T  R+F+      L           I S++FS + + L A  D    
Sbjct: 236 PNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294

Query: 248 HVFGLKVDSGSP-GTSKLHSAS 268
           +V+          G    H   
Sbjct: 295 NVW--DALKADRAGVLAGHDNR 314

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 7/140 (5%)

Query: 73  HQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVD 128
                  +WD  E       +   S++  +    +         +    +++    + + 
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM 262

Query: 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-ITAHASRIASIAMT 187
                    G+  VS +    ++   G       V D         +  H +R++ + +T
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

Query: 188 LDGRFVATASSKGTLIRVFN 207
            DG  VAT S     ++++N
Sbjct: 322 DDGMAVATGSWDSF-LKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 44/305 (14%), Positives = 100/305 (32%), Gaps = 34/305 (11%)

Query: 8   TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
            +  +  + D    ATG     +VY       + R   D       + ++     +    
Sbjct: 64  VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 68  VN------------SGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQK 115
           +             +G       +   ++    +       ++ ++        +V    
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 116 VYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----- 170
                  DL+      T+    G+  V+ + G       G L   VRV D  T       
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 171 ---SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAE----- 222
              ++  T H   + S+  T DG+ V + S   + ++++N  + +   + +         
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 223 -----RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP-GTSKLHSASEPNLSSKN 276
                +  + S+A + N +++ + S    V  +     SG+P    + H  S  +++  N
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW--DKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 277 SSAIS 281
            S++ 
Sbjct: 361 GSSLG 365

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 25/196 (12%), Positives = 57/196 (29%), Gaps = 14/196 (7%)

Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTM--------------DGSLLQEMRRGAE 222
           H S +  +  + DG ++AT  +K T +   +                D   L      + 
Sbjct: 61  HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS 282
              I S+ FS + ++LA  ++   + ++ ++                      +   + S
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGG 342
               R V      +        + + V  +         I    LD +    + +     
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 343 EMHQLEHYKFLKPEEP 358
           E    E+      ++ 
Sbjct: 241 ERLDSENESGTGHKDS 256

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 17/195 (8%)

Query: 72  PHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQ 129
                 V +WD      L  L   +            VV   L+  + V++      +  
Sbjct: 153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212

Query: 130 IETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH--ASRIASIAMT 187
           +    + T   ++  N     +   G     V++ D  T +           + A   + 
Sbjct: 213 LTGHQSLTSGMELKDN-----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 267

Query: 188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRR---GAERAEIYSLAFSSNAQWLAASSDK 244
            +  FV T+S  GT +++++   G  ++ +     G     ++ +  S+     A  S  
Sbjct: 268 FNKNFVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

Query: 245 GT----VHVFGLKVD 255
           GT    + V    VD
Sbjct: 327 GTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 169 KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS 228
           K  K +  H   + +  +   G  + + S   T ++V++ + G  L+ +        ++S
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNT-LKVWSAVTGKCLRTLV--GHTGGVWS 62

Query: 229 LAFSSNAQW 237
                N   
Sbjct: 63  SQMRDNIII 71

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 2/74 (2%)

Query: 176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAE-RAEIYSLAFSSN 234
           A    I+ I +      +   S  G+ + V+     +   ++ +    +  +    F  N
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 235 AQWLAASSDKGTVH 248
                         
Sbjct: 68  TDLQIYVGTVQGEI 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 175 TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234
           T  A  + SI  +   +F+ TA S G  I  +N      ++   +  E      +  + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFNE---DSVVKIACS 303

Query: 235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHS 266
              L  ++   T         +     S ++ 
Sbjct: 304 DNILCLATSDDTFKTNAAIDQTIELNASSIYI 335

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 24/267 (8%), Positives = 55/267 (20%), Gaps = 27/267 (10%)

Query: 8   TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICL 67
           +++  A++ D            R+      KP     F        + V        + L
Sbjct: 90  SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL 149

Query: 68  VNSGP-----HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT 122
           + +            +   D    +Y   L  R+  +      D +           +  
Sbjct: 150 MRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW-----PHQSPR 204

Query: 123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA 182
               +               + +                     G   ++          
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGY---------LSVDLKTGKTHTQEFADLTELYF 255

Query: 183 SIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS 242
           +   +               +  ++     L++           Y +AF      L    
Sbjct: 256 TGLRSPKDPNQIYGVLNR--LAKYDLKQRKLIKAANLDHT---YYCVAFDKKGDKLYLGG 310

Query: 243 DKGTVHVFGLKVDSGSP-GTSKLHSAS 268
               + VF    D+       KL    
Sbjct: 311 TFNDLAVF--NPDTLEKVKNIKLPGGD 335

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 9/69 (13%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 174 ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS 233
           +  H + + +  +  +  +V T +     IRV+++++   L ++        +++L ++ 
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKM-IRVYDSINKKFLLQLS--GHDGGVWALKYAH 63

Query: 234 NAQWLAASS 242
               ++ S+
Sbjct: 64  GGILVSGST 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
           H +  A     +    + + S       ++N   G L+       +  +I+S+ F     
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQ--FNIYNLRSGKLVHANILK-DADQIWSVNFKGKTL 337

Query: 237 WLAASSDKGTVHV 249
             A   D G   +
Sbjct: 338 VAAVEKD-GQSFL 349

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR-RGAERAEIYSLAFS--SNA 235
           +    ++       +A    K   +R  +  D  +   ++  G   + + ++ FS    +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 236 QWLAASSDKGTVHVF 250
           Q+L +  + G V V+
Sbjct: 78  QYLCSGDESGKVIVW 92

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 25/223 (11%), Positives = 49/223 (21%), Gaps = 7/223 (3%)

Query: 1   MNQPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPR-----GGTQL 55
           + +            Q         ET  R    +  + I    + R+       G    
Sbjct: 98  IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLH 157

Query: 56  VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQK 115
           V       ++        ++      D        E S          R+D         
Sbjct: 158 VMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217

Query: 116 VYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT 175
                  DL+  +     V    +   S    P            +   D     S    
Sbjct: 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA-KTRAFGAYNVLESFDLEKNASIKRV 276

Query: 176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
                  S+ ++ DG  V    + G  +  ++        ++ 
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 29/278 (10%), Positives = 64/278 (23%), Gaps = 35/278 (12%)

Query: 5   DPITIHHLALNQDHGCFATGTETGFRVYLSDP--YKPIMRRDFDRNPRGGTQLVSMLFRS 62
              T     +                +   D    + + R D          L       
Sbjct: 32  AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP 91

Query: 63  NIICLVNSGPH----------QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRD-RIVVV 111
           +   L                Q  +V ++D              ++  +   RD   +  
Sbjct: 92  DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG 151

Query: 112 LNQKVYVYNFTDLKLVDQIET-------VVNPTGLCDVSQNAGPM------VMACPGLLK 158
           L + ++V +     LV+              P  L   +Q+            A   +  
Sbjct: 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211

Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTL------IRVFNTMDGS 212
                   G       T   +      M +     A   +K         +  F+    +
Sbjct: 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNA 271

Query: 213 LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
            ++ +         YS+  S++   +      G +  +
Sbjct: 272 SIKRVPLPHS---YYSVNVSTDGSTVWLGGALGDLAAY 306

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 27/260 (10%), Positives = 65/260 (25%), Gaps = 19/260 (7%)

Query: 1   MNQPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF 60
                                     T F +  +  +             G       ++
Sbjct: 105 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 164

Query: 61  RSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYN 120
                 +  +    S+      D +++ L  LS+RS   +           +  K +V  
Sbjct: 165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP 224

Query: 121 FTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR--VEDYGTKKSKYITAHA 178
                         NPT L   S  +         + K      V+    +    + +  
Sbjct: 225 LI--------PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL 238
              +         +   A  KG  +  ++     + +       +  +  L  S++ + +
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVTEV------KNNLTDLRLSADRKTV 329

Query: 239 AASSDKGTVHVFGLKVDSGS 258
               D G ++ F   ++   
Sbjct: 330 MVRKDDGKIYTF--PLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 158 KGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ 215
           KG +   D  T+K   +T   + +  + ++ D + V      G  I  F        +
Sbjct: 297 KGVLLKYDVKTRK---VTEVKNNLTDLRLSADRKTVMVRKDDGK-IYTFPLEKPEDER 350

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
           H   I +++ + DG+ + +A ++G  I  ++   G   +          I  +  +S   
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV-HATMITGIKTTSKGD 68

Query: 237 WLAASSDKGTVHV 249
               S D     V
Sbjct: 69  LFTVSWDDHLKVV 81

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTL-IRVFNTMDGSLLQEM 217
           GQ+ + D  T + K +      +    ++  GR++      G + +      + + + E+
Sbjct: 42  GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 101

Query: 218 RRGAE-RAEIYSLAFSSNAQWLAAS-SDKGTVHVF 250
           + G+E R+   S       ++  A         + 
Sbjct: 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTL-IRVFNTMDGSLLQEM 217
           GQ+ + D  +KK   +      +    M+  GR++        + +      + + + E+
Sbjct: 42  GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101

Query: 218 RRGAE-RAEIYSLAFSSNAQWLAASSDKGTVHVF 250
           + G E R+   S       ++  A +        
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 6/71 (8%), Positives = 18/71 (25%), Gaps = 4/71 (5%)

Query: 180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA 239
               +  T  G  +   +     +        +  +         +      S +  + A
Sbjct: 19  TAVVLGNTPAGDKIQYCNGTS--VYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCA 74

Query: 240 ASSDKGTVHVF 250
           +    G V ++
Sbjct: 75  SGDVHGNVRIW 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.28
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.22
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.19
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.04
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.04
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.01
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.0
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.91
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.89
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.82
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.33
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.27
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.99
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.98
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.8
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.73
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.72
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.68
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.62
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.54
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.29
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.27
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.74
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.56
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.04
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.46
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.73
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.44
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.07
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.29
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.51
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.68
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.52
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	83.47

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-43  Score=292.86  Aligned_cols=278  Identities=15%  Similarity=0.167  Sum_probs=233.8

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcce---eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPI---MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|...|.+++|+|+|++|++|+|+.|+|||++.....   ..... .+|.+.|.+++|+++++.++.++    .|+.|++
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~-~~h~~~I~~v~~s~dg~~l~s~~----~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGG----EASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEE----SSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeee-cCCCCcEEEEEEcCCCCEEEEee----ccccccc
Confidence            5899999999999999999999999999999754322   22222 27899999999999999988777    7899999


Q ss_pred             EECCCc--cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           81 WDDHEN--RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      ||+...  +....+. |...+..+.|+|++.+++   .++.|++|++.+++.......+...+..+++++++..  +++ 
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--~~~-  200 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK--LWT-  200 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEE-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc-
Confidence            998754  4455555 788999999999998877   7889999999999998888888999999999998875  444 


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      ++.|+.+++|+...........|...|.+++|+|++++|++++.|+. |++||+++++......   |...|++++|+|+
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~---~~~~i~~v~~s~~  276 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHL---HESCVLSLKFAYC  276 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEECC---CSSCEEEEEECTT
T ss_pred             ccccccccccccccceeecccccccceEEEEEcccccccceeccccc-cccccccccccccccc---cccccceEEECCC
Confidence            55799999998766444444568899999999999999999999999 9999999888765433   7789999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      +++|++++.||.|++||+.+++..                                   .        ...+.+.|.+++
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~~~~-----------------------------------~--------~~~~~~~v~~~~  313 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYGASI-----------------------------------F--------QSKESSSVLSCD  313 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEE-----------------------------------E--------EEECSSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEE-----------------------------------E--------EccCCCCEEEEE
Confidence            999999999999999999887621                                   0        011346889999


Q ss_pred             ecccCCEEEEEecCCeEEEEEe
Q 018248          315 FGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      |+|++++|++|+.||+|++|++
T Consensus       314 ~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         314 ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSCEEEEEETTSCEEEEEE
T ss_pred             EeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-41  Score=278.06  Aligned_cols=283  Identities=13%  Similarity=0.139  Sum_probs=231.8

Q ss_pred             CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      +.+.+.+..++++|+|+.|+.+.++.|.+|++++.+...  .+. +|...|.+++|+|++++++.++    .|++|++||
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~--~~~-~H~~~v~~~~~sp~g~~latg~----~dg~i~iwd   86 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE--IYT-EHSHQTTVAKTSPSGYYCASGD----VHGNVRIWD   86 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCE--EEC-CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEE
T ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeE--EEc-CCCCCEEEEEEeCCCCeEeccc----cCceEeeee
Confidence            345567788999999999999998889999998765553  344 8999999999999999988777    789999999


Q ss_pred             CCCccEE--eeec-cCcceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           83 DHENRYL--GELS-FRSEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        83 ~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      +.+++..  ..+. |...|.+++|+|++++++     .+..+++|++++++....+..|...+..++|+|+++.. +++ 
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~-l~s-  164 (311)
T d1nr0a1          87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR-IIS-  164 (311)
T ss_dssp             SSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE-EEE-
T ss_pred             eeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceee-ecc-
Confidence            9887644  3455 889999999999998877     24569999999999999999999999999999988753 444 


Q ss_pred             CCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC-----CCCcceEE
Q 018248          155 GLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG-----AERAEIYS  228 (359)
Q Consensus       155 g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~-----~~~~~i~~  228 (359)
                      |+.|+.|++|+.+. +....+..|..+|+++.|+|++++|++++.|+. |++||..+++.+..+...     .|...|++
T Consensus       165 gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~  243 (311)
T d1nr0a1         165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG  243 (311)
T ss_dssp             EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred             cccccccccccccccccccccccccccccccccCcccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            66899999988775 666777889999999999999999999999999 999999999988877532     25678999


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-
Q 018248          229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-  307 (359)
Q Consensus       229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  307 (359)
                      ++|+|++++|++|+.||.|+|||+++++..                                 +.         +..+. 
T Consensus       244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~---------------------------------~~---------l~~~~~  281 (311)
T d1nr0a1         244 LTWSPDGTKIASASADKTIKIWNVATLKVE---------------------------------KT---------IPVGTR  281 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEE---------------------------------EE---------EECCSS
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCCcEE---------------------------------EE---------EECCCC
Confidence            999999999999999999999999876511                                 11         11111 


Q ss_pred             CcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          308 NVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       308 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      .....+.+.++++.|++++.||.|++|+.+
T Consensus       282 ~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         282 IEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            111233455556789999999999999864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-40  Score=274.53  Aligned_cols=277  Identities=13%  Similarity=0.169  Sum_probs=242.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.++|++|+|+|++++|++|+ |+.|+|||+++++..  ..+. +|...|..+++++++..++...    .++.+.+|+
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~-~h~~~V~~~~~~~~~~~~~~~~----~~~~~~~~~   87 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCS----ADMTIKLWD   87 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSCCCEEE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCcEEEEeeecccccccccc----ccccccccc
Confidence            4899999999999999999999 999999999987766  4454 7999999999999999888877    679999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      ....+....+. +...+.++.++|++..++   .|+.+++||+++++.+..+..+...+..+++++++..  +++ ++.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~d  164 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL--IAS-CSND  164 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE--EEE-EETT
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCE--EEE-EeCC
Confidence            88888877776 889999999999998777   8899999999999999999999988888999888764  555 5679


Q ss_pred             eeEEEEecCC-eeeEEeecccccccEEEEccCC--------------------cEEEEEeCCCCeEEEEEcCCCcEEEEe
Q 018248          159 GQVRVEDYGT-KKSKYITAHASRIASIAMTLDG--------------------RFVATASSKGTLIRVFNTMDGSLLQEM  217 (359)
Q Consensus       159 ~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~--------------------~~l~~~~~dg~~i~iwd~~~~~~~~~~  217 (359)
                      +.|++|+... .....+..|...+.+++|+|++                    .++++++.|+. |++||+++++++..+
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTL  243 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCCcEEEEE
Confidence            9999987664 6667788899999999988753                    47899999999 999999999999999


Q ss_pred             ecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecc
Q 018248          218 RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK  297 (359)
Q Consensus       218 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (359)
                      ..  |...|.+++|+|++++|++++.||.|+|||+++++..                                       
T Consensus       244 ~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------  282 (317)
T d1vyhc1         244 VG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---------------------------------------  282 (317)
T ss_dssp             EC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---------------------------------------
T ss_pred             eC--CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEE---------------------------------------
Confidence            87  7789999999999999999999999999999887632                                       


Q ss_pred             cceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248          298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~  335 (359)
                         ..+..|.+.|++++|+|++++|++|+.||.|++|+
T Consensus       283 ---~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         283 ---KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ---EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ---EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence               12445677899999999999999999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-39  Score=278.95  Aligned_cols=282  Identities=16%  Similarity=0.155  Sum_probs=221.3

Q ss_pred             CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeec---------------ccCCCCceeEEEEeccCCEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDF---------------DRNPRGGTQLVSMLFRSNIICLV   68 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~---------------~~~h~~~v~~~~~~~~~~~~~~~   68 (359)
                      .|.+.|+||+|+|||++||+|+|+.|+||++.+++.......               ..+|...|..++|+++++.++.+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            489999999999999999999999999999987665432210               12577789999999999988887


Q ss_pred             ecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeec
Q 018248           69 NSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQ  144 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (359)
                      +    .|+.|++||..+++.+..+. |...|.++.+++++..++   .++.+++||..+.........+.... .+.+.+
T Consensus       140 ~----~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~  214 (388)
T d1erja_         140 A----EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSP  214 (388)
T ss_dssp             E----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECS
T ss_pred             c----cccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccc-cccccC
Confidence            7    78999999999999988888 899999999999987766   78999999998888777766555443 444444


Q ss_pred             CCCccEEEecCCCCeeEEEEecCC-eeeEE-------eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE--
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGT-KKSKY-------ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL--  214 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~--  214 (359)
                      ... .++++ |+.|+.|++|+... .....       ..+|...|.+++|+|++++|++++.|+. |++||+++++..  
T Consensus       215 ~~~-~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~  291 (388)
T d1erja_         215 GDG-KYIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSD  291 (388)
T ss_dssp             TTC-CEEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC--------
T ss_pred             CCC-CeEEE-EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCccccc
Confidence            333 23555 66799999988764 33222       3468889999999999999999999999 999999765432  


Q ss_pred             ----------EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248          215 ----------QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR  284 (359)
Q Consensus       215 ----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (359)
                                .....  |...|.+++|+|++++|++|+.||.|++||+++++..                          
T Consensus       292 ~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~--------------------------  343 (388)
T d1erja_         292 SKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL--------------------------  343 (388)
T ss_dssp             -------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE--------------------------
T ss_pred             cccccccceeeeccc--ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE--------------------------
Confidence                      22222  6778999999999999999999999999999987621                          


Q ss_pred             EeeeecceEEecccceeEEeecCCcEEEee------ecccCCEEEEEecCCeEEEEEeC
Q 018248          285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVG------FGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                                      ..++.|.+.|.+++      |+|++++|++|+.||+|++|++.
T Consensus       344 ----------------~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         344 ----------------LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ----------------EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ----------------EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                            12344556666654      67899999999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-38  Score=264.17  Aligned_cols=279  Identities=13%  Similarity=0.104  Sum_probs=230.7

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.++|++++|+|++++||+|+ ||.|+|||+.+++...  .+. +|...|..++++++++.++.++    .|+.+++|+
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~~~-~~~~~v~~v~~~~~~~~l~~~~----~d~~i~~~~  125 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH--AIP-LRSSWVMTCAYAPSGNYVACGG----LDNICSIYN  125 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--EEE-CSCSCEEEEEECTTSSEEEEEE----TTCCEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE--EEe-cccccEEeeEeeccceeeeeec----ccceeeccc
Confidence            5999999999999999999999 9999999999876653  444 7899999999999999988888    789999999


Q ss_pred             CCCcc----EEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           83 DHENR----YLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        83 ~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      .....    ....+. +...........+.....  .+.....+.................+....+.+....  +++ |
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  202 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL--FVS-G  202 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE--EEE-E
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccce--eEE-e
Confidence            76543    334444 555555555555555555  7888899988777777666666776776777666553  454 6


Q ss_pred             CCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248          156 LLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN  234 (359)
Q Consensus       156 ~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  234 (359)
                      ..|+.|++|+.. +..+..+.+|...|++++|+|++++|++|+.|+. |++||++..+.+..+....+...|.+++|+|+
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCceEEEEECCC
Confidence            679999998865 4677888999999999999999999999999999 99999999998888766657778999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248          235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG  314 (359)
Q Consensus       235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  314 (359)
                      +++|++|+.||.|++||+.+++..                                          ..+..|.+.|++++
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~~~~~------------------------------------------~~~~~H~~~V~~l~  319 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALKADRA------------------------------------------GVLAGHDNRVSCLG  319 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEE------------------------------------------EEECCCSSCEEEEE
T ss_pred             CCEEEEEECCCEEEEEECCCCcEE------------------------------------------EEEcCCCCCEEEEE
Confidence            999999999999999999886611                                          12445678899999


Q ss_pred             ecccCCEEEEEecCCeEEEEE
Q 018248          315 FGRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       315 ~s~~~~~l~~~~~dg~i~v~~  335 (359)
                      |+|++++|++|+.||.|++|+
T Consensus       320 ~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999995

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-39  Score=276.74  Aligned_cols=321  Identities=13%  Similarity=0.089  Sum_probs=229.0

Q ss_pred             CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ..++|+|++|+|||++||+|+ |+.|+||++++++......+. +|.++|..++|+|++++++.++    .|++|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s----~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG----TDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE----TTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-CCCCCEEEEEECCCCCEEEEEE----CCCeEEEEee
Confidence            357899999999999999999 899999999877666666676 9999999999999999988877    7899999999


Q ss_pred             CCccEEeee--c-cCcceeEEEEecceeEEE---ecCeEEEEEcccceee----eeEeccCCCceeeeeecCCCccEEEe
Q 018248           84 HENRYLGEL--S-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLV----DQIETVVNPTGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        84 ~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (359)
                      .+++....+  . |...|.+++|+|+++.++   .|+.|++|++......    .....+...+.+++|+|++..  +++
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~--l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL--LAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE--EEE
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc--eec
Confidence            877654443  3 778999999999998877   7899999998654332    223456677888999998764  665


Q ss_pred             cCCCCeeEEEEecCC-------------------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          154 PGLLKGQVRVEDYGT-------------------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~-------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                       |+.|+.+++|+...                   ........|...|.+++|+|++++|++++.|+. |++||+.+++.+
T Consensus       159 -~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~~  236 (371)
T d1k8kc_         159 -GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAV  236 (371)
T ss_dssp             -EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTEE
T ss_pred             -cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccce
Confidence             66899999998642                   234556778899999999999999999999999 999999999999


Q ss_pred             EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEE
Q 018248          215 QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYF  294 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (359)
                      ..+..  |..+|.+++|+|++++|++|. |+.+++|..+................... ..+......+...........
T Consensus       237 ~~~~~--~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  312 (371)
T d1k8kc_         237 ATLAS--ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDKKASSEG  312 (371)
T ss_dssp             EEEEC--SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC---------CHHHHHHHCCCCC----
T ss_pred             eeeec--ccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccc-cccccceeeEecccceeEEec
Confidence            99987  678999999999998888765 77788877765432110000000000000 000000000000000000000


Q ss_pred             ecccceeEEeecCCcEEEeeecccC----CEEEEEecCCeEEEEEeCC
Q 018248          295 SSKWSMAQFRLPENVQYLVGFGRQN----NTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       295 ~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~v~~~~~  338 (359)
                      ...........|.+.|+.+++.+.+    ..|++++.||.|++|+++.
T Consensus       313 ~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            0000001112366789999997754    4589999999999999854

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-38  Score=260.22  Aligned_cols=280  Identities=14%  Similarity=0.131  Sum_probs=214.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|.++|++++|+|||++|++|+ |+.|++||+++++..  ..+..+|...|..+++++++.. +.++    .|+.+++|
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~h~~~v~~v~~~~~g~~-~~~~----~d~~v~~~   81 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFPDVHATMITGIKTTSKGDL-FTVS----WDDHLKVV   81 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSSCSCSSCEEEEEECTTSCE-EEEE----TTTEEEEE
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCCcEEEEEeecccee-eccc----ceeeEEEe
Confidence            57999999999999999999999 999999999986654  4444478999999999988764 3444    58999999


Q ss_pred             ECCCccEEe----eeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           82 DDHENRYLG----ELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        82 d~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      +........    ...+...+.+++++|++.+++  .++.+++|+...  .....  ......+++++|+++.  +++ |
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~--l~~-g  154 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQF--VAV-G  154 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCE--EEE-E
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccc--ccccc--cccccccccccccccc--ccc-c
Confidence            976543211    112677889999999998777  889999999532  22222  2344577889888764  555 6


Q ss_pred             CCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec-CCCCcceEEEEec
Q 018248          156 LLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR-GAERAEIYSLAFS  232 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s  232 (359)
                      +.|+.+++|+.+.....  ....|...|.+++|+|++++|++++.|+. |++||+.++..+..... ..|...|++++|+
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            67999999887654433  34578899999999999999999999999 99999988776543322 2267899999999


Q ss_pred             CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248          233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL  312 (359)
Q Consensus       233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (359)
                      |++++|++++.||.|++||++++...+                                .....       ..+...+..
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~--------------------------------~~~~~-------~~~~~~v~~  274 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNKPSDHP--------------------------------IIIKG-------AHAMSSVNS  274 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCTTSCC--------------------------------EEETT-------SSTTSCEEE
T ss_pred             ccccceEEEcCCCEEEEEECCCCCcce--------------------------------EEEec-------CCCCCcEEE
Confidence            999999999999999999999876321                                00000       012245565


Q ss_pred             eeecccCCEEEEEecCCeEEEEEeC
Q 018248          313 VGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       313 ~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      +.| +++++|++++.||.|++|+++
T Consensus       275 ~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         275 VIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEE-CCCCEEEEEeCCCEEEEEecc
Confidence            554 567899999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-37  Score=256.64  Aligned_cols=242  Identities=14%  Similarity=0.158  Sum_probs=204.5

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|++++|+|+|++||+|+ |+.|+||++...+......+. +|..+|..++|+++++.++.++.+  .+..+++|
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~~~--~~~~~~v~  131 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEG--RERFGHVF  131 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECC--SSCSEEEE
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc-cccCcccccccccccccccccccc--cccccccc
Confidence            36899999999999999999999 999999999987766666665 789999999999999988888755  35789999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeE-EE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIV-VV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      ++++++....+. |...|.+++|+|++.+ ++   .|+.|++||+++++....+..|..++..+.++|+++.  +++ ++
T Consensus       132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~--l~~-~~  208 (311)
T d1nr0a1         132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL--FAS-TG  208 (311)
T ss_dssp             ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE--EEE-EE
T ss_pred             ccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccc--ccc-cc
Confidence            999999988888 8899999999999864 43   6899999999999999999999999999999998764  555 55


Q ss_pred             CCeeEEEEecCC-eeeEEe-------ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCC-CcceE
Q 018248          157 LKGQVRVEDYGT-KKSKYI-------TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAE-RAEIY  227 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~-~~~i~  227 (359)
                      .|+.+++|+... .....+       .+|...|++++|+|++++|++|+.||. |+|||+++++++.++..+.. ...+.
T Consensus       209 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~~~~~~~~  287 (311)
T d1nr0a1         209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQL  287 (311)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCCccceEE
Confidence            799999998765 333333       357889999999999999999999999 99999999999998876421 23445


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ++.|  +++.|++++.||.|++||.+
T Consensus       288 ~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEEe--cCCEEEEEECCCEEEEEeCC
Confidence            5555  56679999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-37  Score=255.85  Aligned_cols=236  Identities=12%  Similarity=0.210  Sum_probs=208.0

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.+.|.+++|+|||++|++|+ |+.|++||+..........+. +|...+..+.+++++..++.++    .|+.|++|+
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~----~d~~i~~~~  169 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCC----SDGNIAVWD  169 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEE----TTSCEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccc-cccccccccccccccccccccc----ccccccccc
Confidence            5788999999999999999998 999999999866655555555 7888999999999888888777    689999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      +.+++...... |...|.+++|++++..++   .|+.|++||+++++.+..+. +...+..++++|+++.  +++ |+.|
T Consensus       170 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~--l~~-~~~d  245 (337)
T d1gxra_         170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEW--LAV-GMES  245 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSE--EEE-EETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccc--cce-eccc
Confidence            99998888777 889999999999988777   78999999999998887765 5677888899988765  554 5579


Q ss_pred             eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248          159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  238 (359)
                      +.+++|+.+.........|...|.+++|+|++++|++++.|+. |++||+.+++.+..+.   |...|.+++|+|++++|
T Consensus       246 ~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEE
T ss_pred             cccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeCCCCEE
Confidence            9999999988777788899999999999999999999999999 9999999999998876   56799999999999999


Q ss_pred             EEEcCCCcEEEEEc
Q 018248          239 AASSDKGTVHVFGL  252 (359)
Q Consensus       239 ~~~~~dg~i~iw~~  252 (359)
                      ++++.||+|+|||+
T Consensus       322 ~t~s~D~~I~vWdl  335 (337)
T d1gxra_         322 VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEEeCCCeEEEEEE
Confidence            99999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-35  Score=244.92  Aligned_cols=242  Identities=15%  Similarity=0.160  Sum_probs=186.2

Q ss_pred             CceEEEEEccCCCEEEEecCCc--eEEEEcCCCcceeeeecccCC-CCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            7 ITIHHLALNQDHGCFATGTETG--FRVYLSDPYKPIMRRDFDRNP-RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~d~~--i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ..+++++|+|+|+.|++++++.  |+.|+...........+. +| ...+.+++|+|..+...+++++  .||+|++||+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~~lasgs--~Dg~i~iWd~   94 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGD--ESGKVIVWGW   94 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEE--TTSEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCCEEEEEe--CCCCEEEeee
Confidence            4678999999999999887444  455655444444444554 66 4679999999865433333333  6899999998


Q ss_pred             CCccEEe--------eec-cCcceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248           84 HENRYLG--------ELS-FRSEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        84 ~~~~~~~--------~~~-~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (359)
                      ..++...        .+. +..+|.+++|++++..++     .++.+.+|+..+++.+..+..|...+..++|+|+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccce
Confidence            7653222        223 678899999999998776     36789999999999999999999999999999988764


Q ss_pred             EEEecCCCCeeEEEEecCC-eeeEE---eecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248          150 VMACPGLLKGQVRVEDYGT-KKSKY---ITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA  224 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~-~~~~~---~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  224 (359)
                      +++  ++.|+.+++|+... +....   ...|...|.+++|+|+ +.+|++++.|+. |++||+++++.+..+..  |..
T Consensus       175 ~~~--~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~--~~~  249 (325)
T d1pgua1         175 SMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIED--DQE  249 (325)
T ss_dssp             EEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCB--TTB
T ss_pred             EEE--eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeeccccccccccc--ccc
Confidence            333  55799999988764 33333   3456788999999997 689999999999 99999999999999986  455


Q ss_pred             ceEEEEec---CCCCEEEEEcCCCcEEEEEccCCC
Q 018248          225 EIYSLAFS---SNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       225 ~i~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ++.++.|+   |+|++|++++.|+.|+|||+++++
T Consensus       250 ~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            55544444   689999999999999999999875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-32  Score=226.93  Aligned_cols=278  Identities=18%  Similarity=0.265  Sum_probs=202.1

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|.+.|.+ +++++|++||+|+ |+.|+|||+.+++..  ..+. +|...|..+++.  ++.++.++    .|+.+++|+
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--~~~~-~h~~~V~~v~~~--~~~l~s~s----~D~~~~~~~   83 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMR--DNIIISGS----TDRTLKVWN   83 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEE--TTEEEEEE----TTSCEEEEE
T ss_pred             CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCCEEEEEeC--CCccccce----ecccccccc
Confidence            58888865 4777899999999 999999999987655  5565 899999988876  45666665    689999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEec--------------------------------------c-eeEEE--ecCeEEEEE
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRR--------------------------------------D-RIVVV--LNQKVYVYN  120 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~--------------------------------------~-~~~~~--~d~~i~i~d  120 (359)
                      ........... ....+......+                                      . ...+.  .++.|++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            77654443332 222221111111                                      1 11222  678889999


Q ss_pred             cccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCC
Q 018248          121 FTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSK  199 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  199 (359)
                      ....+.+..+..+...  ...+.+++..  +++ |+.||.|++|+... +.+..+..|...+.+++++  +++|++++.|
T Consensus       164 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--l~s-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d  236 (342)
T d2ovrb2         164 PETETCLHTLQGHTNR--VYSLQFDGIH--VVS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  236 (342)
T ss_dssp             GGGTEEEEEECCCSSC--EEEEEECSSE--EEE-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             cccceeeEEEcCcccc--cccccCCCCE--EEE-EeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCC
Confidence            8888888777766553  4455666654  555 66899999988765 6677788899888887775  4699999999


Q ss_pred             CCeEEEEEcCCCcEEEEeecC-CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248          200 GTLIRVFNTMDGSLLQEMRRG-AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS  278 (359)
Q Consensus       200 g~~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (359)
                      +. |++||+...+....+..+ .|...+.++.++  ++++++++.||+|+|||+++++..                    
T Consensus       237 ~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i--------------------  293 (342)
T d2ovrb2         237 ST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI--------------------  293 (342)
T ss_dssp             SC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE--------------------
T ss_pred             CE-EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEE--------------------
Confidence            99 999999999888877653 245567777765  569999999999999999987621                    


Q ss_pred             ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCe----EEEEEeCC
Q 018248          279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGS----YYKCEFDP  338 (359)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----i~v~~~~~  338 (359)
                                  ..+....     ...+.+.|++++|+|++.+|++|+.||+    |++|+++.
T Consensus       294 ------------~~~~~~~-----~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         294 ------------RNLVTLE-----SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ------------EEEEECT-----TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ------------EEEeccc-----CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence                        0010000     1123467999999999999999999985    99999875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-33  Score=235.49  Aligned_cols=238  Identities=16%  Similarity=0.229  Sum_probs=198.5

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|+|++|++|+ |+.|++|+...++....  +. +|...+..+.+.+++..++.++    .++.+++||
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~--~~-~h~~~v~~~~~~~~~~~~~~~~----~~~~i~~~d  191 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI--LQ-GHEQDIYSLDYFPSGDKLVSGS----GDRTVRIWD  191 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--EC-CCSSCEEEEEECTTSSEEEEEE----TTSEEEEEE
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccccccc--cc-cccccccccccccccccccccc----cceeeeeee
Confidence            5778899999999999999999 99999999987655533  33 7999999999999888888777    689999999


Q ss_pred             CCCccEEeeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEe-------ccCCCceeeeeecCCCccEE
Q 018248           83 DHENRYLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIE-------TVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l  151 (359)
                      ..+........+.....++.+.+ ++.+++   .|+.|++||..+++....+.       .|...+..++++|++..  +
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l  269 (388)
T d1erja_         192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--V  269 (388)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--E
T ss_pred             ccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE--E
Confidence            99988888777666666666655 677766   78999999998887766653       35667888999998764  5


Q ss_pred             EecCCCCeeEEEEecCC-------------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          152 ACPGLLKGQVRVEDYGT-------------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                      ++ |+.|+.|++|+...             ........|...|.+++|+|++++|++|+.||. |++||+++++++.++.
T Consensus       270 ~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         270 VS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EE-EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEe
Confidence            55 56799999998753             223445678899999999999999999999999 9999999999999998


Q ss_pred             cCCCCcceEEEE------ecCCCCEEEEEcCCCcEEEEEccC
Q 018248          219 RGAERAEIYSLA------FSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       219 ~~~~~~~i~~~~------~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      +  |.+.|.+++      |+|++++|++|+.||+|+||+++.
T Consensus       348 ~--H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         348 G--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             C--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             C--CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            7  778999987      467999999999999999999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-32  Score=223.41  Aligned_cols=262  Identities=10%  Similarity=0.098  Sum_probs=202.7

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|..+|++++|+|    |++|+ ||.|++||+.++.       . +|...|..+.+.++. .++.++    .|+++++|
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-------~-~h~~~V~~~~~~~~~-~~~s~s----~D~~v~~w   72 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------Q-DHSNLIVSLDNSKAQ-EYSSIS----WDDTLKVN   72 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-------C-CCCSCEEEEECCSTT-CCEEEE----TTTEEEET
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-------C-CCCCCEEEEEecCCC-eEEEEe----eccccccc
Confidence            46999999999997    88888 9999999987421       2 688999988877544 445555    68999999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      ++...      +....+..+.+++++..++  .++.+.+|+..+++.+..+....   ...+++++++.  +++++..++
T Consensus        73 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~v~~~~~~  141 (287)
T d1pgua2          73 GITKH------EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQNY--VAVGLEEGN  141 (287)
T ss_dssp             TEEEE------ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECSSE--EEEEETTTS
T ss_pred             ccccc------ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccCcc--eeeeccccc
Confidence            86432      2455677889999988777  78889999998888888776543   34677787765  444344556


Q ss_pred             eEEEEecCCeee-EE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC---
Q 018248          160 QVRVEDYGTKKS-KY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN---  234 (359)
Q Consensus       160 ~v~~~~~~~~~~-~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~---  234 (359)
                      .+++|+...... .. ...|...+++++|+|++.+|++|+.||. |++||+.+++....... .|...|.+++|+|+   
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKG  219 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSC-CCSSCEEEEEECCCC--
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeeccccccccccc-ccccccceeeecccccc
Confidence            899998765332 22 2357788999999999999999999999 99999999887654332 27789999999875   


Q ss_pred             -------CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248          235 -------AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE  307 (359)
Q Consensus       235 -------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                             +.+|++|+.|++|+|||++++...                                         +..+..|.
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~-----------------------------------------~~~~~~h~  258 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-----------------------------------------IKALNAHK  258 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCC-----------------------------------------EEETTSST
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCCeE-----------------------------------------EEEeCCCC
Confidence                   468999999999999999875421                                         01123456


Q ss_pred             CcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248          308 NVQYLVGFGRQNNTIVIVGLDGSYYKCEF  336 (359)
Q Consensus       308 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~  336 (359)
                      +.|++++|+|++ .|++++.||.|++|++
T Consensus       259 ~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         259 DGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            789999999985 6899999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-32  Score=232.29  Aligned_cols=237  Identities=16%  Similarity=0.137  Sum_probs=189.9

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD  123 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~  123 (359)
                      ..+|.+++|+++++.+++++    .|+.|++||..+++  .+..++ |..+|.+++|+|++++++   .|+.|++||+.+
T Consensus         7 ~~pIt~~~~s~dg~~la~~~----~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICP----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEEC----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEe----CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            57899999999999998877    68999999987765  556666 899999999999998887   789999999976


Q ss_pred             ceee--eeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-----eeEEeecccccccEEEEccCCcEEEEE
Q 018248          124 LKLV--DQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-----KSKYITAHASRIASIAMTLDGRFVATA  196 (359)
Q Consensus       124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~  196 (359)
                      ++..  ..+..+...+..++|+|+++.  +++ |+.|+.+++|.....     .......|...|.+++|+|++++|++|
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~--l~~-~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKK--FAV-GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSE--EEE-EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccc--cee-ecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            6543  344567778899999998875  554 557999999765432     223345788999999999999999999


Q ss_pred             eCCCCeEEEEEcCCC------------------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248          197 SSKGTLIRVFNTMDG------------------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS  258 (359)
Q Consensus       197 ~~dg~~i~iwd~~~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  258 (359)
                      +.|+. |++||....                  +.+.....  |...|.+++|+|++++|++++.|+.|++||+.++...
T Consensus       160 s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         160 SCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             ETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             ccCcE-EEEEeeccCccccccccccccccccceeeeeeccC--ccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence            99999 999997543                  23444443  7789999999999999999999999999999886511


Q ss_pred             CCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          259 PGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                                                ..+..+..+|.+++|+||+++|++ +.|+.+++|.++.
T Consensus       237 ------------------------------------------~~~~~~~~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         237 ------------------------------------------ATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDS  273 (371)
T ss_dssp             ------------------------------------------EEEECSSCCEEEEEEEETTEEEEE-ETTSSCEEEEEET
T ss_pred             ------------------------------------------eeeecccccceeeeecCCCCEEEE-EcCCceEEEEeeC
Confidence                                                      123445678999999999877765 5588888888876


Q ss_pred             C
Q 018248          339 M  339 (359)
Q Consensus       339 ~  339 (359)
                      .
T Consensus       274 ~  274 (371)
T d1k8kc_         274 A  274 (371)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.3e-32  Score=222.30  Aligned_cols=246  Identities=12%  Similarity=0.115  Sum_probs=192.5

Q ss_pred             eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE--ecCeEEE
Q 018248           43 RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--LNQKVYV  118 (359)
Q Consensus        43 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~~i~i  118 (359)
                      +.+. ||...|.+++++++++.++.++    .|+.|++||+.+++.+..+.  |...|.+++|+|++.+++  .|+.+++
T Consensus         6 ~~~~-GH~~~V~~l~~s~dg~~l~s~s----~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~   80 (299)
T d1nr0a2           6 QVRY-GHNKAITALSSSADGKTLFSAD----AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV   80 (299)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred             eEcC-CCCCCcEEEEECCCCCEEEEEc----CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEE
Confidence            3444 9999999999999999888777    79999999999999988885  788999999999998877  8999999


Q ss_pred             EEccccee---eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEE
Q 018248          119 YNFTDLKL---VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVAT  195 (359)
Q Consensus       119 ~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  195 (359)
                      |+......   ......+...+..+++++++..  +++ + .++.+++|+... .....  ....+.+++|+|++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--~~~-~-~~~~i~~~~~~~-~~~~~--~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI--AVA-A-CYKHIAIYSHGK-LTEVP--ISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSC--EEE-E-ESSEEEEEETTE-EEEEE--CSSCEEEEEECTTSCEEEE
T ss_pred             eccCCcccccccccccccccccccccccccccc--ccc-c-cccccccccccc-ccccc--ccccccccccccccccccc
Confidence            99854321   1222344556677889988764  333 2 366888887543 22222  3446789999999999999


Q ss_pred             EeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCC
Q 018248          196 ASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSK  275 (359)
Q Consensus       196 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  275 (359)
                      ++.|+. |++||+++++....... .|...|++++|+|++++|++++.|+.|++||+.++....                
T Consensus       154 g~~dg~-i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~----------------  215 (299)
T d1nr0a2         154 GGQDSK-VHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA----------------  215 (299)
T ss_dssp             EETTSE-EEEEEEETTEEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES----------------
T ss_pred             cccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc----------------
Confidence            999999 99999988775543222 267899999999999999999999999999998765210                


Q ss_pred             CCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248          276 NSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                                             ....+..|...|.+++|+|++++|++|+.||.|++|++.....
T Consensus       216 -----------------------~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         216 -----------------------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             -----------------------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             -----------------------ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence                                   0011334567899999999999999999999999999876443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-32  Score=224.91  Aligned_cols=237  Identities=13%  Similarity=0.234  Sum_probs=208.6

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|...|.+++|+|++.+++++. ++.+.+|+....+..  ..+. +|...+..+.+.++++.++..+    .|+.+++||
T Consensus        57 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~  129 (317)
T d1vyhc1          57 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMH-GHDHNVSSVSIMPNGDHIVSAS----RDKTIKMWE  129 (317)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCC-CCSSCEEEEEECSSSSEEEEEE----TTSEEEEEE
T ss_pred             CCCCcEEEEeeecccccccccccccccccccccccccc--cccc-cccccceeeeccCCCceEEeec----cCcceeEee
Confidence            5889999999999999999999 899999998865544  3333 7889999999999999888877    789999999


Q ss_pred             CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCc----------
Q 018248           83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP----------  148 (359)
Q Consensus        83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  148 (359)
                      +.+++.+..+. |...+.+++|+|++.+++   .|+.|++|++.+++....+..+...+..++++|+...          
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             cccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence            99999999888 889999999999998887   7999999999999999888888888888888776432          


Q ss_pred             --------cEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248          149 --------MVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       149 --------~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                              .++++ ++.|+.|++|+.. +..+..+.+|...|.+++|+|++++|++++.||. |++||+++++++..+..
T Consensus       210 ~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~  287 (317)
T d1vyhc1         210 TKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNA  287 (317)
T ss_dssp             -------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEEEC
T ss_pred             eeeeccCCceeEe-ccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCcEEEEEcC
Confidence                    23444 6679999998765 4777888999999999999999999999999999 99999999999999987


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                        |...|++++|+|++++|++|+.||+|+|||
T Consensus       288 --h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         288 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             --CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             --CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence              778999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=225.55  Aligned_cols=272  Identities=17%  Similarity=0.206  Sum_probs=200.1

Q ss_pred             CCCCce-EEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITI-HHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v-~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|.+.| +|++|  ++++|++|+ |+.|+|||+.+++..  ..+. +|.+.|..++++++ +.++.++    .|+.|++|
T Consensus        10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~l~~s~~-~~l~s~s----~D~~i~iw   79 (355)
T d1nexb2          10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHG-GILVSGS----TDRTVRVW   79 (355)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEE--EEEE-CCSSCEEEEEEETT-TEEEEEE----TTCCEEEE
T ss_pred             CcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEE--EEEE-CCCCCEEEEEEcCC-CEEEEEe----cccccccc
Confidence            487775 56554  688999999 999999999987655  4555 89999999999874 4555555    68999999


Q ss_pred             ECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEecc---------------------C
Q 018248           82 DDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV---------------------V  134 (359)
Q Consensus        82 d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~---------------------~  134 (359)
                      +....+......   .........+.+++..++   .|+.|++||+.+..........                     .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            999888776665   334455667788888777   7899999999765543322110                     0


Q ss_pred             CCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248          135 NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL  213 (359)
Q Consensus       135 ~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~  213 (359)
                      .........++++.  ++. +..|+.+++|+... +.+.....+...+.++.++|++.++++++.|+. |++||++++..
T Consensus       160 ~~~~v~~~~~~~~~--~~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~  235 (355)
T d1nexb2         160 HMASVRTVSGHGNI--VVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGEL  235 (355)
T ss_dssp             CSSCEEEEEEETTE--EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTCCE
T ss_pred             ccccccccccccce--eee-ecccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeeecccccc
Confidence            11122334444443  444 55789999988754 666777888899999999999999999999999 99999999999


Q ss_pred             EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248          214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY  293 (359)
Q Consensus       214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (359)
                      +..+..  |...|.+++++  +++|++++.||.|++||+++....                                   
T Consensus       236 ~~~~~~--h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-----------------------------------  276 (355)
T d1nexb2         236 MYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-----------------------------------  276 (355)
T ss_dssp             EEEECC--CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE-----------------------------------
T ss_pred             cccccc--ccccccccccc--cceeeeeeccccccccccccccee-----------------------------------
Confidence            999987  77899999996  469999999999999999876511                                   


Q ss_pred             EecccceeEEeecCCcEEE-eeecccCCEEEEEecCCeEEEEEeCC
Q 018248          294 FSSKWSMAQFRLPENVQYL-VGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                               +..+...+.. .+|++++++|++ +.||.|++|++..
T Consensus       277 ---------~~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~vwd~~t  312 (355)
T d1nexb2         277 ---------FSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRS  312 (355)
T ss_dssp             ---------EEEECTTCCCCCEEEECSSEEEE-EETTEEEEEETTT
T ss_pred             ---------cccccCCceEEEEEcCCCCEEEE-EeCCEEEEEECCC
Confidence                     1122223333 455667666555 5699999999865

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-32  Score=226.05  Aligned_cols=242  Identities=16%  Similarity=0.179  Sum_probs=192.9

Q ss_pred             CCCceEEEEEcc--CCCEEEEec-CCceEEEEcCCCcceee------eecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            5 DPITIHHLALNQ--DHGCFATGT-ETGFRVYLSDPYKPIMR------RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         5 h~~~v~~~~~s~--~g~~l~~~~-d~~i~iw~~~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      +...|++++|+|  +|++|++|+ ||+|+|||+...+....      ..+. .|.+++..++|++++..++.++.+  .+
T Consensus        62 ~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~~--~~  138 (325)
T d1pgua1          62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEG--RD  138 (325)
T ss_dssp             TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECC--SS
T ss_pred             CCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeecc--cc
Confidence            457899999998  678999999 99999999875433211      1222 578899999999999998888766  46


Q ss_pred             CeEEEEECCCccEEeeec-cCcceeEEEEecceeEE-E---ecCeEEEEEcccceeeeeEe---ccCCCceeeeeecCCC
Q 018248           76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVV-V---LNQKVYVYNFTDLKLVDQIE---TVVNPTGLCDVSQNAG  147 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~  147 (359)
                      +.+.+|+..+++.+..+. |...|.+++|+|++..+ +   .|+.+++||....+....+.   .+...+.+++|+|+..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc
Confidence            899999999999999988 89999999999987543 2   68999999998877666554   3556688899999765


Q ss_pred             ccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEc---cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248          148 PMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMT---LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER  223 (359)
Q Consensus       148 ~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~  223 (359)
                      . ++++ ++.|+.|++|+.. ++.+..+.+|..++..+.|+   |++++|++++.|+. |+|||+++++++..+..+.+.
T Consensus       219 ~-~l~s-~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~  295 (325)
T d1pgua1         219 E-FVIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQQ  295 (325)
T ss_dssp             C-EEEE-EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEEECCTTC
T ss_pred             e-eccc-cccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEEEecCCc
Confidence            4 3444 5579999998865 46678888898888777766   78999999999999 999999999999988875555


Q ss_pred             cceEEEEecCC-CCEEEEEcCCCcEEEEEc
Q 018248          224 AEIYSLAFSSN-AQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       224 ~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~  252 (359)
                      ..+..+++.+. +.+|++++.||.|+|||+
T Consensus       296 ~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            44444444432 347889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-31  Score=216.76  Aligned_cols=275  Identities=13%  Similarity=0.192  Sum_probs=200.6

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ..|...|+|++  +||++||+|+ |+.|+|||+++++..  ..+. +|.+.|.+++  ++++.++.++    .|+.|++|
T Consensus        12 ~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~v~--~~~~~l~s~s----~D~~i~~~   80 (293)
T d1p22a2          12 SETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQ--YDERVIITGS----SDSTVRVW   80 (293)
T ss_dssp             CSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEE--CCSSEEEEEE----TTSCEEEE
T ss_pred             CCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEeeee--cccceeeccc----cccccccc
Confidence            46788899876  5799999999 999999999987655  5555 8999987665  5778777766    78999999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEccccee---eeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKL---VDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      ++..+....................+..+.  .++.+.+|+......   ...+..+...+....+  ....  +++ ++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~--~~~-~s  155 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY--IVS-AS  155 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE--EEE-EE
T ss_pred             ccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccc--ccc-cc
Confidence            999998887776443333333334444444  899999999866543   2333444444444443  3333  333 44


Q ss_pred             CCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248          157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA  235 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  235 (359)
                      .|+.+++|+... +.+..+.++...+..+.++  +.++++++.|+. |++||+++.+.+..+..  +...+..  +++++
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~~--~~~~~  228 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRC--IRFDN  228 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEE--EECCS
T ss_pred             CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeecc--cceeeee--ccccc
Confidence            699999988764 6677788888888777664  568999999999 99999999999988876  5556655  45678


Q ss_pred             CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee
Q 018248          236 QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF  315 (359)
Q Consensus       236 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  315 (359)
                      .+|++++.||.|++||+........                                 .........+..|.+.|.+++|
T Consensus       229 ~~l~sg~~dg~i~iwd~~~~~~~~~---------------------------------~~~~~~~~~~~~H~~~V~~v~~  275 (293)
T d1p22a2         229 KRIVSGAYDGKIKVWDLVAALDPRA---------------------------------PAGTLCLRTLVEHSGRVFRLQF  275 (293)
T ss_dssp             SEEEEEETTSCEEEEEHHHHTSTTS---------------------------------CTTTTEEEEECCCSSCCCCEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCccccc---------------------------------cCCceeeEEecCCCCCEEEEEE
Confidence            8999999999999999987543210                                 0011112234556778888888


Q ss_pred             cccCCEEEEEecCCeEEEEE
Q 018248          316 GRQNNTIVIVGLDGSYYKCE  335 (359)
Q Consensus       316 s~~~~~l~~~~~dg~i~v~~  335 (359)
                      +  +++|++++.||+|++|+
T Consensus       276 d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         276 D--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             C--SSCEEECCSSSEEEEEC
T ss_pred             c--CCEEEEEecCCEEEEeC
Confidence            4  57899999999999995

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=7.9e-32  Score=227.31  Aligned_cols=277  Identities=10%  Similarity=0.003  Sum_probs=210.8

Q ss_pred             eEEEEEcc-CCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248            9 IHHLALNQ-DHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus         9 v~~~~~s~-~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      +....||| ||+++|+++++.|++|+++.+...   .+  +|...+..++|+|+++.+++++..  .+..|++||..+++
T Consensus         5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~---~~--~~~~~v~~~~~spDg~~l~~~~~~--~g~~v~v~d~~~~~   77 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KV--PEPLRIRYVRRGGDTKVAFIHGTR--EGDFLGIYDYRTGK   77 (360)
T ss_dssp             GGEEEEEECGGGCEEEEETTEEEEECTTSSBEE---EC--SCCSCEEEEEECSSSEEEEEEEET--TEEEEEEEETTTCC
T ss_pred             hhcccccCCCCCEEEEEECCeEEEEECCCCcEE---Ec--cCCCCEEEEEECCCCCEEEEEEcC--CCCEEEEEECCCCc
Confidence            45678999 999999999999999999865433   23  689999999999999998887753  22579999999988


Q ss_pred             EEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe-------cCCC
Q 018248           88 YLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC-------PGLL  157 (359)
Q Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~g~~  157 (359)
                      ......|...|.+++|+|++++++   .++.+++|++.+++....+..+...+..++|+|+++.++...       .+..
T Consensus        78 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          78 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred             EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecc
Confidence            877767999999999999998888   889999999999998888888888888999999998643322       2445


Q ss_pred             CeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE-------EEEeecC----------
Q 018248          158 KGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL-------LQEMRRG----------  220 (359)
Q Consensus       158 d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~-------~~~~~~~----------  220 (359)
                      ++.+++|+........+..+...+..++|+|+|++|++++.++. +.+||......       ...+..+          
T Consensus       158 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (360)
T d1k32a3         158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  236 (360)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             ccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccccceeeccccceEEEecccCccccceEC
Confidence            67889999988877777788888999999999999999999999 99998654322       1111110          


Q ss_pred             ------------------------CCCcceEEEEecCCCC-------------EEEEEcCCCcEEEEEccCCCCCCCCCc
Q 018248          221 ------------------------AERAEIYSLAFSSNAQ-------------WLAASSDKGTVHVFGLKVDSGSPGTSK  263 (359)
Q Consensus       221 ------------------------~~~~~i~~~~~s~~~~-------------~l~~~~~dg~i~iw~~~~~~~~~~~~~  263 (359)
                                              ...+....+...+++.             ++++++.++.|++||+++++       
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------  309 (360)
T d1k32a3         237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-------  309 (360)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-------
T ss_pred             CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-------
Confidence                                    0011122222222221             23444556777788777654       


Q ss_pred             cccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248          264 LHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM  339 (359)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~  339 (359)
                                                             ...+.+.+..++|+|||++|++++.||.|++|+++..
T Consensus       310 ---------------------------------------~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         310 ---------------------------------------VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             ---------------------------------------EEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             ---------------------------------------EEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence                                                   1111235788999999999999999999999999763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-30  Score=218.66  Aligned_cols=273  Identities=12%  Similarity=0.160  Sum_probs=194.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..+|.+++|+|++ +|++|+ |+.|++|+....+........ .+..........++...++..+    .|+.|++||
T Consensus        51 ~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~d~~i~iw~  124 (355)
T d1nexb2          51 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGS----RDNTLHVWK  124 (355)
T ss_dssp             CCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEEEEETTEEEEEEEE----TTSEEEEEE
T ss_pred             CCCCCEEEEEEcCCC-EEEEEecccccccccccccccccccccc-cccccccccccccccceeeeec----CCCcEEEEE
Confidence            589999999999865 778887 999999999876655443332 1222223333444445555555    689999999


Q ss_pred             CCCccEEeeec------------------------cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC
Q 018248           83 DHENRYLGELS------------------------FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN  135 (359)
Q Consensus        83 ~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~  135 (359)
                      +.+........                        +...+.  .+.+++.+++   .|+.|++||+.+++.+.....+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  202 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  202 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeecccc
Confidence            88765443321                        111222  3344555554   789999999999999888888888


Q ss_pred             CceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248          136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL  214 (359)
Q Consensus       136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~  214 (359)
                      ......+++++..  +++ ++.|+.|++|+... ..+..+.+|...|.+++++  +++|++++.||. |++||++++...
T Consensus       203 ~~~~~~~~~~~~~--~~~-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~-i~iwd~~~~~~~  276 (355)
T d1nexb2         203 RIYSTIYDHERKR--CIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYSRK  276 (355)
T ss_dssp             CEEEEEEETTTTE--EEE-EETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSE-EEEEETTTCCEE
T ss_pred             cccccccccccee--eec-ccccceEEeeeccccccccccccccccccccccc--cceeeeeecccc-ccccccccccee
Confidence            8888889988875  444 55799999977654 6677889999999999986  468999999999 999999988766


Q ss_pred             EEeecCCCCcceEEE-EecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248          215 QEMRRGAERAEIYSL-AFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY  293 (359)
Q Consensus       215 ~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (359)
                      ....    ...+.++ .+++++++|+++ .|+.|+|||+++++...                                . 
T Consensus       277 ~~~~----~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~--------------------------------~-  318 (355)
T d1nexb2         277 FSYH----HTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVH--------------------------------A-  318 (355)
T ss_dssp             EEEE----CTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCC--------------------------------S-
T ss_pred             cccc----cCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEE--------------------------------E-
Confidence            5543    2344444 567788877766 48999999999877321                                0 


Q ss_pred             EecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          294 FSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                              .+..|.+.|.+++|+|+ ..+++++.||.++||.++
T Consensus       319 --------~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         319 --------NILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             --------CTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred             --------EecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence                    01224568899999987 578888999999888775

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.7e-30  Score=219.93  Aligned_cols=246  Identities=14%  Similarity=0.219  Sum_probs=168.7

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce-----eeeecccCCCCceeEEE---E-eccC-CEEEEEecC
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI-----MRRDFDRNPRGGTQLVS---M-LFRS-NIICLVNSG   71 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~-----~~~~~~~~h~~~v~~~~---~-~~~~-~~~~~~~~~   71 (359)
                      +.|...|.++++++  +++++|+ |+.|+|||..+.+..     .....  .|...+..+.   . ..++ ....+++++
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeee--eccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            57999999999875  6899999 999999997654321     11111  3444332221   1 1122 222233333


Q ss_pred             CCCCCeEEEEECCCccEEee--------ec---cCcceeEEEEecce-----eEEE---ecCeEEEEEcccce-------
Q 018248           72 PHQSNKVMIWDDHENRYLGE--------LS---FRSEVKNVRLRRDR-----IVVV---LNQKVYVYNFTDLK-------  125 (359)
Q Consensus        72 ~~~d~~i~iwd~~~~~~~~~--------~~---~~~~v~~~~~~~~~-----~~~~---~d~~i~i~d~~~~~-------  125 (359)
                        .|+.|++|++........        +.   +...+..+++.++.     .+++   .|+.+++|++....       
T Consensus        87 --~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          87 --FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             --TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             --CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence              689999998654322111        11   44567778887653     3444   79999999984211       


Q ss_pred             -----------eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeE------EeecccccccEEEEc
Q 018248          126 -----------LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSK------YITAHASRIASIAMT  187 (359)
Q Consensus       126 -----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~------~~~~~~~~i~~~~~s  187 (359)
                                 .......+...+.+++++|++   ++++ |+.|+.|++|+... +.+.      .+.+|..+|++++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~las-gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG---LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC---EEEE-EeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence                       011111233446678888875   4665 77899999998764 3333      345689999999999


Q ss_pred             cCCcEEEEEeCCCC--eEEEEEcCCCcEEEEeec-----------CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          188 LDGRFVATASSKGT--LIRVFNTMDGSLLQEMRR-----------GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       188 ~~~~~l~~~~~dg~--~i~iwd~~~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      |+|++|++|+.|+.  .|++||+++++.+..+..           ..|...|++++|+||+++|++++.|++|+|||+++
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            99999999998863  289999999998887752           12778999999999999999999999999999998


Q ss_pred             CCCC
Q 018248          255 DSGS  258 (359)
Q Consensus       255 ~~~~  258 (359)
                      ++..
T Consensus       321 g~~~  324 (393)
T d1sq9a_         321 KERI  324 (393)
T ss_dssp             TEEE
T ss_pred             CCEE
Confidence            8643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.2e-31  Score=219.93  Aligned_cols=287  Identities=11%  Similarity=0.045  Sum_probs=197.1

Q ss_pred             CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .+.|.+.|++|+|+|++++||+|+ |++|+|||++............+|..+|.+++|+++...++++++   .|+.|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~---~d~~v~~   83 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT---VQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE---TTSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc---cccceee
Confidence            478999999999999999999999 999999999765543222211269999999999987665444333   6899999


Q ss_pred             EECCCccEEeeec-cC-cceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe----cc--CCCceeeeeecCCCcc
Q 018248           81 WDDHENRYLGELS-FR-SEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE----TV--VNPTGLCDVSQNAGPM  149 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~  149 (359)
                      |++..+....... +. .......+.++...++   .++.+++||++.+.......    .+  ........+.+.+.. 
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  162 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-  162 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc-
Confidence            9998887766665 33 3333444444444444   89999999986554333222    11  112234455666654 


Q ss_pred             EEEecCCCCeeEEEEecCCee----eEEeecccccccEEEEc-cCCcEEEEEeCCCCeEEEEEcCCCcE---------EE
Q 018248          150 VMACPGLLKGQVRVEDYGTKK----SKYITAHASRIASIAMT-LDGRFVATASSKGTLIRVFNTMDGSL---------LQ  215 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~~~~----~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~~i~iwd~~~~~~---------~~  215 (359)
                       ++. ++.|+.|++|+.....    ......+...+.+..+. +++..+++++.||. +.+|+......         ..
T Consensus       163 -~~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         163 -LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             -EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCTTCEEEE
T ss_pred             -eee-ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCCcceeeccccceee
Confidence             443 5579999999876422    22233344455555554 56779999999999 99999754321         11


Q ss_pred             Eee----cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecc
Q 018248          216 EMR----RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLP  291 (359)
Q Consensus       216 ~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (359)
                      ...    ...|...+++++|+|++++|++|+.||.|+|||+++++...                                
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~--------------------------------  287 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK--------------------------------  287 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE--------------------------------
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE--------------------------------
Confidence            111    11245678999999999999999999999999999875210                                


Q ss_pred             eEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          292 KYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                       .         +. ....+..++|+|+++.|++++.|+.+++|....
T Consensus       288 -~---------~~-~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         288 -N---------FA-KFNEDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             -E---------CC-CCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             -E---------ec-CCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence             0         00 012445688999999999999999988886644

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.2e-29  Score=211.97  Aligned_cols=236  Identities=12%  Similarity=0.143  Sum_probs=192.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|..+|.+++|+|++.++++|+ |+.+++|+......  .....+. +|.......... ....+....    .+.....
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~  168 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFL-DDNQIVTSS----GDTTCAL  168 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC-CCSSCEEEEEEE-ETTEEEEEE----TTTEEEE
T ss_pred             cccccEEeeEeeccceeeeeecccceeecccccccccccccceecc-cccccccccccc-ccccccccc----ccccccc
Confidence            4788999999999999999999 99999999875432  2223343 565555544433 344444444    5788889


Q ss_pred             EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +............ +...+....+.+.+.+++   .|+.|++||+++++.+..+..|...+..++|+|+++.  +++ |+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~--l~s-~s  245 (340)
T d1tbga_         169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FAT-GS  245 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEE-EE
T ss_pred             cccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCE--EEE-Ee
Confidence            9877766665555 778888999999887776   7999999999999999999999999999999998764  555 56


Q ss_pred             CCeeEEEEecCCee-eEEe--ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          157 LKGQVRVEDYGTKK-SKYI--TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       157 ~d~~v~~~~~~~~~-~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      .|+.|++|+..... ...+  ..+...+.+++|+|++++|++|+.||. |++||+.+++++..+.+  |.++|++++|+|
T Consensus       246 ~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--H~~~V~~l~~s~  322 (340)
T d1tbga_         246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLGVTD  322 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEECT
T ss_pred             CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEEeC
Confidence            79999999887643 3333  456678999999999999999999999 99999999999999987  778999999999


Q ss_pred             CCCEEEEEcCCCcEEEEE
Q 018248          234 NAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       234 ~~~~l~~~~~dg~i~iw~  251 (359)
                      ++++|++|+.||.|+|||
T Consensus       323 d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEccCCEEEEeC
Confidence            999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-28  Score=205.60  Aligned_cols=260  Identities=13%  Similarity=0.137  Sum_probs=173.5

Q ss_pred             ccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE-------EeeeccCcceeEEEE------ec-ceeEEE
Q 018248           46 DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY-------LGELSFRSEVKNVRL------RR-DRIVVV  111 (359)
Q Consensus        46 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~v~~~~~------~~-~~~~~~  111 (359)
                      ..+|...|..+++  .+++++.++    .|++|++||..+.+.       .....+...+..+..      +. ++.+++
T Consensus        10 ~~~H~~~I~~v~~--~~~~l~S~S----~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_          10 GKAHDADIFSVSA--CNSFTVSCS----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             SSCSSSCEEEEEE--CSSEEEEEE----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             CCcccCccEEEEE--eCCEEEEEE----CCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            3489999998876  457777777    789999999765432       222223333322222      11 223443


Q ss_pred             ---ecCeEEEEEcccceeeeeEe----------ccCCCceeeeeecCCC---ccEEEecCCCCeeEEEEecCCe------
Q 018248          112 ---LNQKVYVYNFTDLKLVDQIE----------TVVNPTGLCDVSQNAG---PMVMACPGLLKGQVRVEDYGTK------  169 (359)
Q Consensus       112 ---~d~~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~l~~~g~~d~~v~~~~~~~~------  169 (359)
                         .|+.|++|++........+.          .+...+..+++.++..   ..++++ ++.||.+++|+....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-TDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-EETTSCEEEEEEESSSSHHHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-EcCCCcEEEEEeecCCcccce
Confidence               59999999985432221111          1233445666766543   234554 457999999876321      


Q ss_pred             -------------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC----CCCcceEEEEec
Q 018248          170 -------------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG----AERAEIYSLAFS  232 (359)
Q Consensus       170 -------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~----~~~~~i~~~~~s  232 (359)
                                   .......+...+.+++|+|++ +|++|+.|+. |++||+.+++++..+...    .|..+|++++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEcccc
Confidence                         011122345668999999998 8899999999 999999999988776532    267899999999


Q ss_pred             CCCCEEEEEcCCCc---EEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc
Q 018248          233 SNAQWLAASSDKGT---VHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV  309 (359)
Q Consensus       233 ~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (359)
                      |||++|++|+.|++   |++||+++++...                            . +............+..|.+.
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~----------------------------~-l~~~~~~~~~~~~~~gH~~~  291 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIG----------------------------S-LSVPTHSSQASLGEFAHSSW  291 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEE----------------------------E-ECBC--------CCBSBSSC
T ss_pred             cccceeeeecCCCCcceeeecccccceeee----------------------------e-eccccccccceeeeecccCc
Confidence            99999999998874   9999999876220                            0 00000011111224457789


Q ss_pred             EEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEE
Q 018248          310 QYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQ  346 (359)
Q Consensus       310 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~  346 (359)
                      |++++|+||+++|++++.||+|++|++..   |+++.
T Consensus       292 V~~l~fspd~~~l~S~s~D~~v~vWd~~~---g~~~~  325 (393)
T d1sq9a_         292 VMSLSFNDSGETLCSAGWDGKLRFWDVKT---KERIT  325 (393)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTT---TEEEE
T ss_pred             eeeeccCCCCCeeEEECCCCEEEEEECCC---CCEEE
Confidence            99999999999999999999999999876   45543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.2e-26  Score=188.28  Aligned_cols=239  Identities=15%  Similarity=0.225  Sum_probs=169.9

Q ss_pred             eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEE
Q 018248           43 RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYN  120 (359)
Q Consensus        43 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d  120 (359)
                      ..++ ||.+.|.. +++++++.++.++    .|++|++||+.+++++..+. |...|.+++|+|+-...+ .|+.+++|+
T Consensus        10 ~~l~-GH~~~V~s-~~~~~g~~l~sgs----~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          10 KVLK-GHDDHVIT-CLQFCGNRIVSGS----DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN   83 (342)
T ss_dssp             EEEE-CSTTSCEE-EEEEETTEEEEEE----TTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             EEEC-CcCCceEE-EEEECCCEEEEEe----CCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccc
Confidence            4555 99999854 5778889887776    79999999999999999998 999999999998732222 889999999


Q ss_pred             cccceeeeeEeccCCCce--------------------------------------eeeeecCCCccEEEecCCCCeeEE
Q 018248          121 FTDLKLVDQIETVVNPTG--------------------------------------LCDVSQNAGPMVMACPGLLKGQVR  162 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~g~~d~~v~  162 (359)
                      ................+.                                      .....+....  ++. ++.++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~d~~i~  160 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVS-GAYDFMVK  160 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC--EEE-EETTSCEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccce--eee-ecCCCeEE
Confidence            865543333222111111                                      0111122222  232 44688888


Q ss_pred             EEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE
Q 018248          163 VEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS  241 (359)
Q Consensus       163 ~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  241 (359)
                      +|+... ..+..+.+|...+.  .+++++.++++++.||. |++||++.++.+..+..  |...+.+++++  +++|+++
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~~~~~~--~~~l~s~  233 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMELK--DNILVSG  233 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEEE--TTEEEEE
T ss_pred             EeecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCe-EEEeecccceeeeEecc--cccceeEEecC--CCEEEEE
Confidence            877654 55666677765544  45568899999999999 99999999999988886  66788888775  4699999


Q ss_pred             cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE
Q 018248          242 SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT  321 (359)
Q Consensus       242 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  321 (359)
                      +.|+.|++||+...+..                                 ..+..      ...+...+..+++  ++++
T Consensus       234 s~d~~i~iwd~~~~~~~---------------------------------~~~~~------~~~~~~~~~~~~~--~~~~  272 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCL---------------------------------QTLQG------PNKHQSAVTCLQF--NKNF  272 (342)
T ss_dssp             ETTSCEEEEETTTCCEE---------------------------------EEECS------TTSCSSCEEEEEE--CSSE
T ss_pred             cCCCEEEEEeccccccc---------------------------------ccccc------cceeeeceeeccc--CCCe
Confidence            99999999999886621                                 01111      0112234455555  5579


Q ss_pred             EEEEecCCeEEEEEeCC
Q 018248          322 IVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       322 l~~~~~dg~i~v~~~~~  338 (359)
                      +++|+.||.|++|++..
T Consensus       273 ~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         273 VITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEEEETTSEEEEEETTT
T ss_pred             eEEEcCCCEEEEEECCC
Confidence            99999999999999875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-25  Score=182.95  Aligned_cols=225  Identities=13%  Similarity=0.216  Sum_probs=169.0

Q ss_pred             CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      +.|...|.++++++++. +++++ |+++++|+...      ..+    ...+..+++.+++..++ .+    .++.+.+|
T Consensus        43 ~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~------~~~----~~~~~~~~~~~~~~~~~-~~----~~~~~~~~  106 (287)
T d1pgua2          43 QDHSNLIVSLDNSKAQE-YSSISWDDTLKVNGITK------HEF----GSQPKVASANNDGFTAV-LT----NDDDLLIL  106 (287)
T ss_dssp             CCCCSCEEEEECCSTTC-CEEEETTTEEEETTEEE------EEC----SSCEEEEEECSSSEEEE-EE----TTSEEEEE
T ss_pred             CCCCCCEEEEEecCCCe-EEEEeeccccccccccc------ccc----ccceeeeeeccCCceEE-Ee----ecccceee
Confidence            46889999999998765 55566 99999998753      222    34455566655544443 34    36789999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCC
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                      +..+++.+..+.....+.++  ++++..++    .++.+++|++...+....+. .+...+..++|+|++..  +++ |+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~-g~  181 (287)
T d1pgua2         107 QSFTGDIIKSVRLNSPGSAV--SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY--IAA-GD  181 (287)
T ss_dssp             ETTTCCEEEEEECSSCEEEE--EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE--EEE-EE
T ss_pred             eccceeeeeeccccceeeee--eccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc--ccc-cc
Confidence            99999999888866666554  44444443    44689999997766555543 35667888999998865  555 66


Q ss_pred             CCeeEEEEecCCeeeE--EeecccccccEEEEccC----------CcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCC
Q 018248          157 LKGQVRVEDYGTKKSK--YITAHASRIASIAMTLD----------GRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAER  223 (359)
Q Consensus       157 ~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~----------~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~  223 (359)
                      .||.|++|+.......  .+..|..+|.+++|+|+          +.+|++|+.|+. |++||++++ +.+..+.+  |.
T Consensus       182 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~--h~  258 (287)
T d1pgua2         182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNA--HK  258 (287)
T ss_dssp             TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTS--ST
T ss_pred             ccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCC--CC
Confidence            7999999998765433  35789999999999875          468999999999 999999774 45555554  78


Q ss_pred             cceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248          224 AEIYSLAFSSNAQWLAASSDKGTVHVFGL  252 (359)
Q Consensus       224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  252 (359)
                      ..|++++|+|++ .|++++.|+.|++|++
T Consensus       259 ~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         259 DGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            899999999986 5788999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1.5e-23  Score=171.63  Aligned_cols=261  Identities=14%  Similarity=0.070  Sum_probs=196.0

Q ss_pred             EEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeE
Q 018248           22 ATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKN  100 (359)
Q Consensus        22 ~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~  100 (359)
                      ++++ |++|.+||+++++......+    ......++++++++.+++++.   .++.|++||+.+++.+..+.....+..
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~----g~~p~~va~spdG~~l~v~~~---~~~~i~v~d~~t~~~~~~~~~~~~~~~   78 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV----GSNPMGAVISPDGTKVYVANA---HSNDVSIIDTATNNVIATVPAGSSPQG   78 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEEG---GGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC----CCCceEEEEeCCCCEEEEEEC---CCCEEEEEECCCCceeeeeeccccccc
Confidence            4455 89999999998876644443    355678899999998876554   468999999999999999886667899


Q ss_pred             EEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec
Q 018248          101 VRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA  176 (359)
Q Consensus       101 ~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~  176 (359)
                      +.+++++..++    .++.+.+|+..+++....+..+. ....+.++|++...++.  +..++.+.+|+...........
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeee--eccccceeeeeccccceeeecc
Confidence            99999987665    67899999999998888887654 45678899988764333  5567888887766544443334


Q ss_pred             ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEEEEEcc
Q 018248          177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVHVFGLK  253 (359)
Q Consensus       177 ~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~  253 (359)
                      +...+..++++|+++.+++++.+...+.+|+....+....+..   ...+..++|+++++.++.++   .++.|++||+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeeccccccccccccccceeeeeeeeecC
Confidence            4556789999999999888887655377888777777766663   35678999999999876654   34679999998


Q ss_pred             CCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEE-EEecCCeEE
Q 018248          254 VDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIV-IVGLDGSYY  332 (359)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~  332 (359)
                      +++..                                 ..         +.. ...+..++|+|||++|+ +++.||.|+
T Consensus       233 t~~~~---------------------------------~~---------~~~-~~~~~~va~spdg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         233 TNKIT---------------------------------AR---------IPV-GPDPAGIAVTPDGKKVYVALSFCNTVS  269 (301)
T ss_dssp             TTEEE---------------------------------EE---------EEC-CSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCeEE---------------------------------EE---------EcC-CCCEEEEEEeCCCCEEEEEECCCCeEE
Confidence            86511                                 00         111 23568899999999875 566799999


Q ss_pred             EEEeCC
Q 018248          333 KCEFDP  338 (359)
Q Consensus       333 v~~~~~  338 (359)
                      +|++..
T Consensus       270 v~D~~t  275 (301)
T d1l0qa2         270 VIDTAT  275 (301)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            998765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.8e-24  Score=186.31  Aligned_cols=282  Identities=11%  Similarity=0.042  Sum_probs=185.5

Q ss_pred             EccCCC--EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           14 LNQDHG--CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        14 ~s~~g~--~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      ++.|.+  ++++.+ |+.|+|||+.+++.+.  .+. .| ..+..++++|+++.+++++    .|+.|++||+.+++...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~--~l~-~g-~~~~~vafSPDGk~l~~~~----~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVK--VID-TG-YAVHISRMSASGRYLLVIG----RDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEE--EEE-CC-SSEEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEE--EEe-CC-CCeeEEEECCCCCEEEEEe----CCCCEEEEEccCCceeE
Confidence            444433  456677 8999999999987664  443 33 4588899999999988777    68999999999887543


Q ss_pred             --eec----cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec------
Q 018248           91 --ELS----FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP------  154 (359)
Q Consensus        91 --~~~----~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------  154 (359)
                        +++    |...+.+++|+|||++++    .++.+.+||..+++....+..+...+....+.+++....++.+      
T Consensus        98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence              333    344456667788998765    7899999999999888887766655555555555544333321      


Q ss_pred             ---CCCCeeEEEEecC-Cee-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE--------------
Q 018248          155 ---GLLKGQVRVEDYG-TKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ--------------  215 (359)
Q Consensus       155 ---g~~d~~v~~~~~~-~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~--------------  215 (359)
                         ....+.+.++... ... ......+...+..++|+|++++++++..+...+.+++..+++.+.              
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             EEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             EEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence               1112223222211 111 122335667788999999999888776544436777765554332              


Q ss_pred             ----------------------------------------EeecCCCCcceEEEEecCCCCEEEE-------EcCCCcEE
Q 018248          216 ----------------------------------------EMRRGAERAEIYSLAFSSNAQWLAA-------SSDKGTVH  248 (359)
Q Consensus       216 ----------------------------------------~~~~~~~~~~i~~~~~s~~~~~l~~-------~~~dg~i~  248 (359)
                                                              .+.+  |...+..++|+||+++|++       +..+++|+
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~  335 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  335 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence                                                    2222  4456888999999999994       45678999


Q ss_pred             EEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEE---
Q 018248          249 VFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIV---  325 (359)
Q Consensus       249 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---  325 (359)
                      |||+++++....                                 ..+......+..+...+..++|||||++|++.   
T Consensus       336 vwd~~t~~~~~~---------------------------------~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~  382 (426)
T d1hzua2         336 VFDLKNLDAKYQ---------------------------------VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN  382 (426)
T ss_dssp             EEETTCTTSCCE---------------------------------EECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred             EEECCCCCcCeE---------------------------------EeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence            999998874310                                 00000000111223467889999999987553   


Q ss_pred             --ecCCeEEEEEeCC
Q 018248          326 --GLDGSYYKCEFDP  338 (359)
Q Consensus       326 --~~dg~i~v~~~~~  338 (359)
                        +.+|.|.||+..+
T Consensus       383 ~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         383 GKNDSSALVVVDDKT  397 (426)
T ss_dssp             CTTSCCEEEEEETTT
T ss_pred             CCCCCCeEEEEECCC
Confidence              3588999998765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=7.4e-25  Score=184.19  Aligned_cols=236  Identities=13%  Similarity=0.119  Sum_probs=174.3

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CC--ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ET--GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      .|...|.+++|+|||++|++++ +.  .|++|+.++++..   .+. +|...+..++|+++++.++..+    .++.+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---~~~-~~~~~v~~~~~spdg~~l~~~~----~~~~~~~  111 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---KFE-ENLGNVFAMGVDRNGKFAVVAN----DRFEIMT  111 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---ECC-CCCCSEEEEEECTTSSEEEEEE----TTSEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---Eee-CCCceEEeeeecccccccceec----ccccccc
Confidence            5889999999999999998776 43  6999999876543   222 6899999999999999999888    6899999


Q ss_pred             EECCCccEEeeec-cCcceeEEEEecceeEEE-------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248           81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA  146 (359)
Q Consensus        81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      |+..+++....+. +...+.+++|+|+|++++             .++.+++||+.+++..... .+...+..++++|++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg  190 (360)
T d1k32a3         112 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADS  190 (360)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTS
T ss_pred             ccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCC
Confidence            9999999888887 778899999999999887             2457999999887665443 345566778999998


Q ss_pred             CccEEEecCCCCeeEEEEecCCe--------eeEEeecc------------------------------------ccccc
Q 018248          147 GPMVMACPGLLKGQVRVEDYGTK--------KSKYITAH------------------------------------ASRIA  182 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~~--------~~~~~~~~------------------------------------~~~i~  182 (359)
                      +.  |++ ++.++.+.+|+....        ....+..+                                    .+...
T Consensus       191 ~~--l~~-~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1k32a3         191 KN--LYY-LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  267 (360)
T ss_dssp             CE--EEE-EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             CE--EEE-EeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee
Confidence            76  444 335777777654321        11111100                                    11112


Q ss_pred             EEEEccCCc-------------EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEE
Q 018248          183 SIAMTLDGR-------------FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV  249 (359)
Q Consensus       183 ~~~~s~~~~-------------~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  249 (359)
                      .+...+++.             ++++++.++. |++||+.+++.. .+     .+.|.+++|||||++|++++.||.|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~~-----~~~v~~~~~SpDG~~l~~~~~Dg~i~v  340 (360)
T d1k32a3         268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVT-EV-----KNNLTDLRLSADRKTVMVRKDDGKIYT  340 (360)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTCCEE-EE-----EEEEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             EeeecCCCceEEEEEecCCCeeEEEecCCCCE-EEEEECCCCeEE-Ee-----cCCcCEEEECCCCCEEEEEECCCeEEE
Confidence            233333222             3445556778 999999887653 22     246899999999999999999999999


Q ss_pred             EEccCCCCC
Q 018248          250 FGLKVDSGS  258 (359)
Q Consensus       250 w~~~~~~~~  258 (359)
                      ||+++++..
T Consensus       341 ~d~~~~~~~  349 (360)
T d1k32a3         341 FPLEKPEDE  349 (360)
T ss_dssp             EESSCTTSC
T ss_pred             EECCCCCcc
Confidence            999998743

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.4e-24  Score=173.18  Aligned_cols=225  Identities=14%  Similarity=0.255  Sum_probs=171.8

Q ss_pred             CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      .|..+|++++|  ++++|++|+ |+.|++|++..+.......     ...............++...    .++.+.+|+
T Consensus        53 ~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  121 (293)
T d1p22a2          53 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI-----HHCEAVLHLRFNNGMMVTCS----KDRSIAVWD  121 (293)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC-----CCCSCEEEEECCTTEEEEEE----TTSCEEEEE
T ss_pred             cCCCCEeeeec--ccceeeccccccccccccccccccccccc-----ccccccccccccccceeecc----cccceeEee
Confidence            58999999987  578999999 9999999999776554333     22333344555566666666    679999999


Q ss_pred             CCCccEEe---eec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248           83 DHENRYLG---ELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL  157 (359)
Q Consensus        83 ~~~~~~~~---~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  157 (359)
                      ..+.....   .+. +...+..+.+.+...... .|+.|++||+++++.+..+..+...+..+.+  ++..  +++ +..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~-~~~  196 (293)
T d1p22a2         122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRL--VVS-GSS  196 (293)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTE--EEE-EET
T ss_pred             ccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccC--CCCe--EEE-ecC
Confidence            87764322   233 778888888888776666 8999999999999999998887776555444  4443  555 557


Q ss_pred             CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC---------CcEEEEeecCCCCcceE
Q 018248          158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD---------GSLLQEMRRGAERAEIY  227 (359)
Q Consensus       158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~---------~~~~~~~~~~~~~~~i~  227 (359)
                      |+.|++|+... ..+....+|...+..  +++++.+|++++.||. |++||+..         ...+..+..  |.+.|+
T Consensus       197 dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~--H~~~V~  271 (293)
T d1p22a2         197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVF  271 (293)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCC
T ss_pred             CCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCccccccCCceeeEEecC--CCCCEE
Confidence            99999988765 556666777776654  5678889999999999 99999753         346677776  778999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEE
Q 018248          228 SLAFSSNAQWLAASSDKGTVHVFG  251 (359)
Q Consensus       228 ~~~~s~~~~~l~~~~~dg~i~iw~  251 (359)
                      +++|  ++++|++++.||+|+|||
T Consensus       272 ~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         272 RLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEE--cCCEEEEEecCCEEEEeC
Confidence            9999  467899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.9e-24  Score=177.74  Aligned_cols=259  Identities=10%  Similarity=0.103  Sum_probs=176.4

Q ss_pred             ccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----EEeeeccCcceeEEEEecce-eEEE---ecCeEE
Q 018248           46 DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----YLGELSFRSEVKNVRLRRDR-IVVV---LNQKVY  117 (359)
Q Consensus        46 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~-~~~~---~d~~i~  117 (359)
                      ..+|.+.|..++|+|+++.++.++    .|++|++||+.++.    ....+.|..+|.+++|+|++ .+++   .|+.|+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s----~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEE----CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            348999999999999999998887    79999999986653    33334589999999999864 4555   799999


Q ss_pred             EEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-----eeEEeecc--cccccEEEEccCC
Q 018248          118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-----KSKYITAH--ASRIASIAMTLDG  190 (359)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-----~~~~~~~~--~~~i~~~~~s~~~  190 (359)
                      +|++...........+........+.+.+... +++ ++.++.+++|+.+..     .......+  ........+.+++
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIA-ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTE-EEE-EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeccccccccccccccccccccccccccccc-ccc-cccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99998776666665554444444443333333 333 447999999986431     12222222  3345667788899


Q ss_pred             cEEEEEeCCCCeEEEEEcCCCcEEEEeec-CCCCcceEEEEec-CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCC
Q 018248          191 RFVATASSKGTLIRVFNTMDGSLLQEMRR-GAERAEIYSLAFS-SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSAS  268 (359)
Q Consensus       191 ~~l~~~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  268 (359)
                      ..+++++.|+. |++||++..+....... ......+.+..+. .++..+++++.||.+.+|++.........       
T Consensus       161 ~~~~~~~~d~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~-------  232 (342)
T d1yfqa_         161 SRLIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS-------  232 (342)
T ss_dssp             SEEEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC-------
T ss_pred             CceeeecCCCc-EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec-------
Confidence            99999999999 99999987653222111 1123345555544 56789999999999999999876533110       


Q ss_pred             CCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          269 EPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                               ....           .+...+.......+...+++++|+|++++|++|+.||.|++|+++.
T Consensus       233 ---------~~~~-----------~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         233 ---------SKRF-----------AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             ---------TTCE-----------EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ---------cccc-----------eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence                     0000           0000000011122345788999999999999999999999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=6.7e-23  Score=167.76  Aligned_cols=237  Identities=13%  Similarity=0.069  Sum_probs=185.5

Q ss_pred             CCceEEEEEccCCCEEE-Eec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            6 PITIHHLALNQDHGCFA-TGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~-~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ...+..++|+|||++|+ ++. ++.|++||+.+++......   .| .....+.+++++..+++.+.   .++.+.+|+.
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  103 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AG-SSPQGVAVSPDGKQVYVTNM---ASSTLSVIDT  103 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CS-SSEEEEEECTTSSEEEEEET---TTTEEEEEET
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cc-cccccccccccccccccccc---ccceeeeccc
Confidence            35578999999999885 555 8999999999876654333   23 34577888888887776654   4689999999


Q ss_pred             CCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248           84 HENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG  159 (359)
Q Consensus        84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~  159 (359)
                      .+++....+.+...+.++.++|++..++    .++.+.+|+..+.+....+..+. ....+++++++..++++.  ...+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVAN--FDSM  180 (301)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEE--TTTT
T ss_pred             ccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-CceEEEeeccccceeeec--cccc
Confidence            9999999998778889999999998765    67899999999998888877654 356788889887755443  3456


Q ss_pred             eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248          160 QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ  236 (359)
Q Consensus       160 ~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  236 (359)
                      .+.++................+..++++++++.+++++.   ++. |++||+.+++.+..+..   ...+.+++|+|||+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~  256 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV---GPDPAGIAVTPDGK  256 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC---CSSEEEEEECTTSS
T ss_pred             ccccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcC---CCCEEEEEEeCCCC
Confidence            677777666555444445566788999999998776543   467 99999999999988874   34689999999999


Q ss_pred             EE-EEEcCCCcEEEEEccCCC
Q 018248          237 WL-AASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       237 ~l-~~~~~dg~i~iw~~~~~~  256 (359)
                      +| ++++.++.|++||+++++
T Consensus       257 ~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         257 KVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEECCCCeEEEEECCCCe
Confidence            76 577789999999999876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.1e-23  Score=179.50  Aligned_cols=247  Identities=11%  Similarity=0.016  Sum_probs=168.4

Q ss_pred             CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecc--cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFD--RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD   82 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd   82 (359)
                      ...+..++|||||++|++++ |+.+++||+++++......+.  .+|.+.+..++++|+++.+++.+.   .++.+++||
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~---~~~~v~i~d  137 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMD  137 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEE
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec---CCCeEEEEc
Confidence            35689999999999999998 999999999988765444432  123333444556678887766554   469999999


Q ss_pred             CCCccEEeeec-c-------------------------------------------------------CcceeEEEEecc
Q 018248           83 DHENRYLGELS-F-------------------------------------------------------RSEVKNVRLRRD  106 (359)
Q Consensus        83 ~~~~~~~~~~~-~-------------------------------------------------------~~~v~~~~~~~~  106 (359)
                      ..+++.+..+. +                                                       ...+..+.++|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (426)
T d1hzua2         138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSS  217 (426)
T ss_dssp             TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTT
T ss_pred             CCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCC
Confidence            88776554332 1                                                       112334555666


Q ss_pred             eeEEE----ecCeEEEEEcccceeeeeEeccC--CCceeeeeecCCCccEEEecCCCCeeEEEEecCC--------eeeE
Q 018248          107 RIVVV----LNQKVYVYNFTDLKLVDQIETVV--NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--------KKSK  172 (359)
Q Consensus       107 ~~~~~----~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--------~~~~  172 (359)
                      ++++.    .+..+.+++..+++.+.......  .......+...+.....+.....++.+.++....        +...
T Consensus       218 g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~  297 (426)
T d1hzua2         218 HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  297 (426)
T ss_dssp             SCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEE
T ss_pred             CcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeE
Confidence            55444    45566677776666665554322  1222333444444434444455677887765432        5677


Q ss_pred             EeecccccccEEEEccCCcEEEE-------EeCCCCeEEEEEcCCCcEEEEeec-------CCCCcceEEEEecCCCCEE
Q 018248          173 YITAHASRIASIAMTLDGRFVAT-------ASSKGTLIRVFNTMDGSLLQEMRR-------GAERAEIYSLAFSSNAQWL  238 (359)
Q Consensus       173 ~~~~~~~~i~~~~~s~~~~~l~~-------~~~dg~~i~iwd~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l  238 (359)
                      .+.+|...+..++|+||+++|++       ++.+++ |+|||+.+++...++..       ..+...+.+++|||||+++
T Consensus       298 ~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             EEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             EEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence            88999999999999999999995       456788 99999999887655421       1245579999999999977


Q ss_pred             EEE-----cCCCcEEEEEccCCC
Q 018248          239 AAS-----SDKGTVHVFGLKVDS  256 (359)
Q Consensus       239 ~~~-----~~dg~i~iw~~~~~~  256 (359)
                      +.+     +.+|.|+|||.++.+
T Consensus       377 ~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         377 WFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             EEEECCCTTSCCEEEEEETTTTE
T ss_pred             EEEEecCCCCCCeEEEEECCCCe
Confidence            432     367889999999976

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=4e-23  Score=172.40  Aligned_cols=269  Identities=12%  Similarity=0.012  Sum_probs=185.3

Q ss_pred             EEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           12 LALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        12 ~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      ++|++++++|++++ ++.|.+||+++++......+  .|...+..++++|+++.+++++.   .++.|.+||+.+++.+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeee
Confidence            47899999999999 99999999998766544444  35667788999999988776654   46999999999999887


Q ss_pred             eeccC-------cceeEEEEecceeEEE---------------ecCeEEEEEcccceeeeeEecc--CCCceeeeeecCC
Q 018248           91 ELSFR-------SEVKNVRLRRDRIVVV---------------LNQKVYVYNFTDLKLVDQIETV--VNPTGLCDVSQNA  146 (359)
Q Consensus        91 ~~~~~-------~~v~~~~~~~~~~~~~---------------~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~  146 (359)
                      .+...       ..+..++|+|||+.++               .+..+.+|+..+++....+..+  ......+.+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            77522       2467899999997765               2678999999877665544332  2233444555444


Q ss_pred             CccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcE--------------------------EEEEeCC
Q 018248          147 GPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRF--------------------------VATASSK  199 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~--------------------------l~~~~~d  199 (359)
                      .  +++.    ++.+.+|+... +.+..+..+ .....+.++|++..                          ++++..+
T Consensus       157 ~--~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (346)
T d1jmxb_         157 S--LYVA----GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  229 (346)
T ss_dssp             C--EEEE----SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             E--EEEe----CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence            3  3333    23466666543 444444433 22333444444432                          2333445


Q ss_pred             CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248          200 GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA  279 (359)
Q Consensus       200 g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (359)
                      .. +.+||..++......... +...+..+.+++++.+++.... +.|++||+.+++..                     
T Consensus       230 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~---------------------  285 (346)
T d1jmxb_         230 YG-YLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLI---------------------  285 (346)
T ss_dssp             EE-EEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEE---------------------
T ss_pred             ce-EEEEECCCCceEEEEeec-ccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEE---------------------
Confidence            55 888898888766554432 5567889999999888877654 57999999887511                     


Q ss_pred             eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                                  +.         +. ....+..++|+|||++|++++.||.|++|+...
T Consensus       286 ------------~~---------~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         286 ------------KA---------AN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             ------------EE---------EE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ------------EE---------Ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence                        00         11 123567899999999999999999999998865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2e-21  Score=161.35  Aligned_cols=262  Identities=11%  Similarity=0.052  Sum_probs=182.5

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-c--
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-F--   94 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~--   94 (359)
                      +++++++ |++|+|||+++++........ .+...+..++++++++.+++++.   .++.|.+||+.+++.+..+. +  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~-~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC-CCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCC
Confidence            4788888 999999999987766444442 33455778999999988776654   47999999999999988876 2  


Q ss_pred             ---CcceeEEEEecceeEEE---------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248           95 ---RSEVKNVRLRRDRIVVV---------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL  156 (359)
Q Consensus        95 ---~~~v~~~~~~~~~~~~~---------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  156 (359)
                         ...+..++|+|++..++               .+..+.+||..+++....+.... .+..++++++++.++.+  + 
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~-  153 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-QITMLAWARDGSKLYGL--G-  153 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-SCCCEEECTTSSCEEEE--S-
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC-CceEEEEcCCCCEEEEE--c-
Confidence               23456889999988775               25689999999999888887544 46678999999874332  2 


Q ss_pred             CCeeEEEEecCC-eeeEEeecccccccEEEEccCCcE------------------------EEEEeCCCCeEEEEEcCCC
Q 018248          157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRF------------------------VATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~------------------------l~~~~~dg~~i~iwd~~~~  211 (359)
                        +.+.+|+... +....+..+.. .....++|++..                        ...++.++. +.+||..++
T Consensus       154 --~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  229 (337)
T d1pbyb_         154 --RDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLETG  229 (337)
T ss_dssp             --SSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEETTTC
T ss_pred             --CCcceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc-EEEEEcCCC
Confidence              2355665544 44444433221 111222222211                        111222345 889999888


Q ss_pred             cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecc
Q 018248          212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLP  291 (359)
Q Consensus       212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (359)
                      ........+ +...+..+.++|++.+++.+  ++.|++||+.+++..                                .
T Consensus       230 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~--------------------------------~  274 (337)
T d1pbyb_         230 EMAMREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI--------------------------------K  274 (337)
T ss_dssp             CEEEEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE--------------------------------E
T ss_pred             cEEEEEecC-CCcceEEEEecccceEEEEc--cccEEEEECCCCcEE--------------------------------E
Confidence            766543322 55678889999999998766  578999999987621                                0


Q ss_pred             eEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          292 KYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                      +          +. ....+.+++|+|||++|++++.||.|++|+...
T Consensus       275 ~----------~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         275 R----------VP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             E----------EE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             E----------Ec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            0          11 123567899999999999999999999998875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.6e-22  Score=173.76  Aligned_cols=308  Identities=10%  Similarity=-0.025  Sum_probs=193.9

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecc--cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFD--RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      ..+..++|||||+++++++ |+.+++||+.+++......++  .+|.+.+....++++++.++..+.   .++.|++||.
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~---~~~~v~i~d~  138 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY---WPPQYVIMDG  138 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---ETTEEEEEET
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC---CCCeEEEEeC
Confidence            4689999999999999998 999999999887654444432  123333344455677887755443   5799999999


Q ss_pred             CCccEEeeec------------cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEec-cCCCceeeeeecCC
Q 018248           84 HENRYLGELS------------FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIET-VVNPTGLCDVSQNA  146 (359)
Q Consensus        84 ~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~  146 (359)
                      .+++.+..+.            +......+.++|++..++    .++.|.+||..+.+....... .......++++|++
T Consensus       139 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg  218 (432)
T d1qksa2         139 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH  218 (432)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred             ccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCC
Confidence            9998887654            234456788899886654    678999999987665443332 23445678999999


Q ss_pred             CccEEEecCCCCeeEEEEecCCeee-EEee-----cccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeec
Q 018248          147 GPMVMACPGLLKGQVRVEDYGTKKS-KYIT-----AHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~~~~-~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      +.++.++  ..++.+.+++...... ..+.     .|........+...+...++.. .++. |.+|+......    ..
T Consensus       219 ~~~~va~--~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~-v~~~~~~~~~~----~~  291 (432)
T d1qksa2         219 RYFITAA--NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS-VALIGTDPEGH----PD  291 (432)
T ss_dssp             CEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE-EEEEECCTTTC----TT
T ss_pred             CEEEEec--cccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCce-EEecccccccc----cc
Confidence            8755544  3466777766665433 3332     1333444455555555555554 3677 99998765532    22


Q ss_pred             CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCC--CceeeeeEeeeecceEEecc
Q 018248          220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNS--SAISSFRFIRGVLPKYFSSK  297 (359)
Q Consensus       220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  297 (359)
                        +...+....++|++..+++++.+...++|...+......  ...+.++ +++....  .....+        +.++..
T Consensus       292 --~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~--~~~sv~v-pDg~~la~~s~d~~~--------k~w~~~  358 (432)
T d1qksa2         292 --NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE--ISGSVAV-FDIKAMTGDGSDPEF--------KTLPIA  358 (432)
T ss_dssp             --TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH--HHTCEEE-EEGGGCCCSSSCCCE--------EEECHH
T ss_pred             --cccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCC--eeeEEEE-EechhhcccccCCce--------Eecccc
Confidence              456788889999999899999999999998776543210  0011111 2221000  000001        111110


Q ss_pred             cceeEEeecCCcEEEeeecccCCEEEEEe-----cCCeEEEEEeCC
Q 018248          298 WSMAQFRLPENVQYLVGFGRQNNTIVIVG-----LDGSYYKCEFDP  338 (359)
Q Consensus       298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~v~~~~~  338 (359)
                      .. +.+..+...+..++|||||++|+++.     .+|.|.||+-..
T Consensus       359 ~~-~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T  403 (432)
T d1qksa2         359 EW-AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  403 (432)
T ss_dssp             HH-HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             cc-cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCC
Confidence            00 01112335677899999999886664     478999997655

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5.9e-21  Score=158.49  Aligned_cols=245  Identities=11%  Similarity=0.019  Sum_probs=178.1

Q ss_pred             CCCceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeeccc--CCCCceeEEEEeccCCEEEEEecCCC-------
Q 018248            5 DPITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDR--NPRGGTQLVSMLFRSNIICLVNSGPH-------   73 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~-------   73 (359)
                      +...+.+++|+|||+++ ++++ ++.|.+||+.+++.........  .+......++++++++.++.......       
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            34567899999999987 4566 8999999999987765444310  01123446788888888876653211       


Q ss_pred             -CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248           74 -QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus        74 -~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (359)
                       .+..+.+||..+++.+..+.....+..++|+|++.+++ .++.+.+||..+++....+..+... ....+.+++.....
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN  190 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC
T ss_pred             ccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcc-ccceecCCcceeec
Confidence             35789999999999999998888899999999998887 7888999999998888777654322 12223333221110


Q ss_pred             Ee---------------------cCCCCeeEEEEecCCeee--EEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248          152 AC---------------------PGLLKGQVRVEDYGTKKS--KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT  208 (359)
Q Consensus       152 ~~---------------------~g~~d~~v~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~  208 (359)
                      ..                     .+..++.+.+++......  ..+..+...+..+.++|++.+++.+  ++. |++||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~v~d~  267 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDL  267 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEET
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--ccc-EEEEEC
Confidence            00                     012234566655544322  2344566778889999999988776  466 999999


Q ss_pred             CCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          209 MDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       209 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .+++.+..+.   +...+.+++|+|||++|++++.+++|+|||+++.+
T Consensus       268 ~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         268 EKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             TTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            9999998887   34578999999999999999999999999999876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.9e-19  Score=153.28  Aligned_cols=301  Identities=11%  Similarity=0.038  Sum_probs=189.1

Q ss_pred             cCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE--Eeee
Q 018248           16 QDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY--LGEL   92 (359)
Q Consensus        16 ~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~   92 (359)
                      ++.-++++.+ ++.|.|||.++++.+.....   | ..+..++++|+++++++++    .|+.+++||+.+++.  +.++
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~---g-~~~~~v~fSpDG~~l~~~s----~dg~v~~~d~~t~~~~~~~~i  101 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT---G-YAVHISRLSASGRYLFVIG----RDGKVNMIDLWMKEPTTVAEI  101 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC---S-SCEEEEEECTTSCEEEEEE----TTSEEEEEETTSSSCCEEEEE
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEEEeC---C-CCeeEEEECCCCCEEEEEc----CCCCEEEEEeeCCCceEEEEE
Confidence            3333457777 89999999999877754442   3 4688999999999998877    789999999988763  3344


Q ss_pred             c----cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCC-----------ceeeeeecCCCccEEEe
Q 018248           93 S----FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNP-----------TGLCDVSQNAGPMVMAC  153 (359)
Q Consensus        93 ~----~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~  153 (359)
                      +    +...+.+..|+|||++++    .++.|++||..+++.+..+..+...           ...+.+++++...+++ 
T Consensus       102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs-  180 (432)
T d1qksa2         102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN-  180 (432)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE-
T ss_pred             ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE-
Confidence            3    334455556778998764    7899999999999988877654322           2345667766653333 


Q ss_pred             cCCCCeeEEEEecCC-eeeEEee-cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC---CCcceEE
Q 018248          154 PGLLKGQVRVEDYGT-KKSKYIT-AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA---ERAEIYS  228 (359)
Q Consensus       154 ~g~~d~~v~~~~~~~-~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~---~~~~i~~  228 (359)
                       ...++.+.+++... +...... .+...+..++|+|+|+++++++.++..+.++|..+++.+..+..+.   +......
T Consensus       181 -~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~  259 (432)
T d1qksa2         181 -VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN  259 (432)
T ss_dssp             -ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred             -EccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccc
Confidence             44578888876654 3333222 3455678999999999988887766549999999998887765432   3344555


Q ss_pred             EEecCCCCEEEEEc-CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248          229 LAFSSNAQWLAASS-DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE  307 (359)
Q Consensus       229 ~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                      ..+...+...++.. .++.|.+|+.................+.+.+........ -.     -...+..    ..+..+.
T Consensus       260 ~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~-p~-----~~~lw~~----~~~~~~~  329 (432)
T d1qksa2         260 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH-PN-----SQYLYVD----ATLNPEA  329 (432)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC-TT-----CSEEEEE----CTTCSSH
T ss_pred             eecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEec-CC-----ccceeec----ccCCCCC
Confidence            66665666555544 478899998776542211111111111111100000000 00     0000100    0011112


Q ss_pred             CcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          308 NVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       308 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ....++++ ||++.|++++.|+.+++|++.
T Consensus       330 ~~~~sv~v-pDg~~la~~s~d~~~k~w~~~  358 (432)
T d1qksa2         330 EISGSVAV-FDIKAMTGDGSDPEFKTLPIA  358 (432)
T ss_dssp             HHHTCEEE-EEGGGCCCSSSCCCEEEECHH
T ss_pred             CeeeEEEE-EechhhcccccCCceEecccc
Confidence            22344555 999999999999999999764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.6e-18  Score=142.18  Aligned_cols=279  Identities=10%  Similarity=0.090  Sum_probs=183.5

Q ss_pred             EEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe----eecc
Q 018248           21 FATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG----ELSF   94 (359)
Q Consensus        21 l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~----~~~~   94 (359)
                      ++++. |++|++|+++.... ...+.+  .|.+.+..++++|+++.+++++.   .|+.|++|++.......    ....
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeeccc
Confidence            35555 99999999975443 333444  47788999999999999876553   47999999987654322    2235


Q ss_pred             CcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeE--eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC
Q 018248           95 RSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQI--ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT  168 (359)
Q Consensus        95 ~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~  168 (359)
                      ...+..++|+|+|++++    .++.|.+|+..........  ..+...+..+.++|+++..+..  ...+..+.+|+...
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~--~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP--ALKQDRICLFTVSD  159 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE--EGGGTEEEEEEECT
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecc--ccccceeeEEEecc
Confidence            56788899999998877    5778999998665544333  3344556678899998864443  33466777766543


Q ss_pred             ee-eE------EeecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCc----EEEEeec----CCCCcceEEEEec
Q 018248          169 KK-SK------YITAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGS----LLQEMRR----GAERAEIYSLAFS  232 (359)
Q Consensus       169 ~~-~~------~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~----~~~~~~~----~~~~~~i~~~~~s  232 (359)
                      .. ..      ...........++|++++.+++.... .+. ..+|+.....    .......    .........++++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  238 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc-eEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence            21 11      11223345678999999998876654 444 7888865432    2222211    1123456788999


Q ss_pred             CCCCEEEEE-cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248          233 SNAQWLAAS-SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY  311 (359)
Q Consensus       233 ~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (359)
                      +++++++.. ..++.+.+|++.......                        ...     .          .....+.+.
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~-----~----------~~~~~~~p~  279 (333)
T d1ri6a_         239 PDGRHLYACDRTASLITVFSVSEDGSVL------------------------SKE-----G----------FQPTETQPR  279 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCE------------------------EEE-----E----------EEECSSSCC
T ss_pred             cccCceeeecccCCeEEEEEEcCCCCEE------------------------EEE-----E----------EeCCCCCee
Confidence            999976554 567889999998755220                        000     0          011123456


Q ss_pred             EeeecccCCEEEEEec-CCeEEEEEeCCCCCCceEEe
Q 018248          312 LVGFGRQNNTIVIVGL-DGSYYKCEFDPMKGGEMHQL  347 (359)
Q Consensus       312 ~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~  347 (359)
                      .++|+|||++|++++. ++.|.+|+++.++ |.+.++
T Consensus       280 ~~a~spDGk~l~va~~~~~~v~v~~id~~t-G~l~~~  315 (333)
T d1ri6a_         280 GFNVDHSGKYLIAAGQKSHHISVYEIVGEQ-GLLHEK  315 (333)
T ss_dssp             CEEECTTSSEEEEECTTTCEEEEEEEETTT-TEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEEECCC-CcEEEE
Confidence            7899999999888765 6899999998765 444443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=7.9e-20  Score=152.13  Aligned_cols=247  Identities=9%  Similarity=0.004  Sum_probs=175.4

Q ss_pred             CCCCceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeeccc---CCCCceeEEEEeccCCEEEEEecCCC-----
Q 018248            4 PDPITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDR---NPRGGTQLVSMLFRSNIICLVNSGPH-----   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~-----   73 (359)
                      ++...+.+++|+|||+++ +++. ++.|++||+.+++.........   .+...+..++++++++.+++......     
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            455677899999999987 4555 8899999999877664443310   01123456788888888766542110     


Q ss_pred             ---CCCeEEEEECCCccEEeeec---cCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248           74 ---QSNKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG  147 (359)
Q Consensus        74 ---~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (359)
                         .+..+.+|+..+++....+.   ....+..+.+++++.+++.++.+.+|++.+++.+..+..+.. ...+.++|++.
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  195 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVL  195 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCC-ccceEEecccc
Confidence               46889999988887665544   445677788888888888888899999999888888765433 23455566554


Q ss_pred             ccEEEec-----------------------CCCCeeEEEEecCCee--eEEeecccccccEEEEccCCcEEEEEeCCCCe
Q 018248          148 PMVMACP-----------------------GLLKGQVRVEDYGTKK--SKYITAHASRIASIAMTLDGRFVATASSKGTL  202 (359)
Q Consensus       148 ~~~l~~~-----------------------g~~d~~v~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~  202 (359)
                      ..+....                       +..+..+.+|+.....  ......+...+..+.+++++.+++....+ . 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  273 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R-  273 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-E-
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC-e-
Confidence            4222110                       1123334445544322  23345677788889999998888776654 5 


Q ss_pred             EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |.+||..+++.+..+..   ...+.+++|||||++|++++.|+.|+|||+++.+
T Consensus       274 v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         274 LAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             EEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             EEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            99999999999988874   3478999999999999999999999999999876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=8.3e-17  Score=135.33  Aligned_cols=279  Identities=8%  Similarity=-0.057  Sum_probs=181.9

Q ss_pred             CCCCceEEEEEccCCCEEEEec------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC----
Q 018248            4 PDPITIHHLALNQDHGCFATGT------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH----   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~----   73 (359)
                      .+..++.+++++|||+.+++..      .+.+.+||.++++....  +.   .+....+.|+|+++.++++.....    
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~--~~---~~~~~~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH--VN---GGFLPNPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE--Ee---CCCCccEEEcCCCCEEEEEeecCCcccc
Confidence            5778899999999999987653      35689999888776643  43   233346889999999888753211    


Q ss_pred             --CCCeEEEEECCCccEEeeec-cCcc-------eeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCce
Q 018248           74 --QSNKVMIWDDHENRYLGELS-FRSE-------VKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTG  138 (359)
Q Consensus        74 --~d~~i~iwd~~~~~~~~~~~-~~~~-------v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~  138 (359)
                        .++.|.+||..+++.+..+. +...       ...+.|+++++.+.     .++.+.+|+....+......    ...
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~  168 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPT  168 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cce
Confidence              46889999999999988876 3322       24577888876554     45678888887766554443    235


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCCeeeE-Eeec------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK-YITA------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~-~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                      .+.++++++..+++  .+.|+.+.+|+....... ....      .......+.+++++.++ ..+.++. +.+|+..++
T Consensus       169 ~~~~s~~g~~~~v~--~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-v~~~~~~~~  244 (373)
T d2madh_         169 CYHIHPGAPSTFYL--LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGK-ILQADISAA  244 (373)
T ss_pred             eEEEecCCCcEEEE--EcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCce-EEEEEcCCC
Confidence            67889998875544  446899999776653332 2221      12223445666666554 5556777 999998776


Q ss_pred             cEEEEeecCCC----------CcceEEEEecCCCCEEE----------EEcCCCcEEEEEccCCCCCCCCCccccCCCCC
Q 018248          212 SLLQEMRRGAE----------RAEIYSLAFSSNAQWLA----------ASSDKGTVHVFGLKVDSGSPGTSKLHSASEPN  271 (359)
Q Consensus       212 ~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~----------~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  271 (359)
                      ...........          ......+++++++..++          +...++.+.+||+.+++..             
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~-------------  311 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-------------  311 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEE-------------
Confidence            54322211101          12334456666665544          3445567788888776521             


Q ss_pred             ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE--EEEEecCCeEEEEEeCC
Q 018248          272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT--IVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~v~~~~~  338 (359)
                                                   ..+. +...+..++|+|||+.  +++++.||.|++|++..
T Consensus       312 -----------------------------~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         312 -----------------------------SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             -----------------------------EEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence                                         0011 2245678999999985  35678899999998866

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.6e-17  Score=137.44  Aligned_cols=246  Identities=11%  Similarity=0.129  Sum_probs=161.4

Q ss_pred             CCCCceEEEEEccCCCEEEEe-c-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            4 PDPITIHHLALNQDHGCFATG-T-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~-~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .|...|..|+|||||++|+++ . |+.|++|++++............+...+..++++++++.++++..   .++.+.+|
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~---~~~~v~~~  110 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY---NAGNVSVT  110 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET---TTTEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc---CCCceeee
Confidence            467889999999999998554 4 899999999865543322211123455677899999999887764   36899999


Q ss_pred             ECCCccEEeeec---cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeE-----e-ccCCCceeeeeecCCCc
Q 018248           82 DDHENRYLGELS---FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQI-----E-TVVNPTGLCDVSQNAGP  148 (359)
Q Consensus        82 d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~  148 (359)
                      +...........   +...+.++.++|+++.++    .+..|.+|+..........     . ........+++++++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            877665444432   667788999999998776    6678999998554322211     1 12233356788888776


Q ss_pred             cEEEecCCCCeeEEEEecCC--ee---eEEee------cccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEE
Q 018248          149 MVMACPGLLKGQVRVEDYGT--KK---SKYIT------AHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQE  216 (359)
Q Consensus       149 ~~l~~~g~~d~~v~~~~~~~--~~---~~~~~------~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~  216 (359)
                      .+..  ....+...++....  ..   .....      ........+++++++++++... .++. +.+|++........
T Consensus       191 ~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~  267 (333)
T d1ri6a_         191 AYCV--NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSVLS  267 (333)
T ss_dssp             EEEE--ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCCEE
T ss_pred             EEee--ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe-EEEEEEcCCCCEEE
Confidence            4444  33455566654432  11   11111      1233456788999999776654 4566 99998875543322


Q ss_pred             eec-CCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCC
Q 018248          217 MRR-GAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVD  255 (359)
Q Consensus       217 ~~~-~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~  255 (359)
                      ... ......+.+++|+|||++|++++ .++.|++|+++..
T Consensus       268 ~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            221 11234678899999999887765 4688999977653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=4.7e-18  Score=141.99  Aligned_cols=276  Identities=11%  Similarity=-0.024  Sum_probs=175.2

Q ss_pred             ceEEEEEccCCCEEEEec------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------CC
Q 018248            8 TIHHLALNQDHGCFATGT------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------QS   75 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------~d   75 (359)
                      ++.-.+.+|||+.+++..      ++.|.+||..+++......     .+....++|+|+++.+++++....      .+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-----~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-----GGFLPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-----ECSSCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-----CCCCCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            344446789999987643      4569999999876654333     334446899999998877642100      36


Q ss_pred             CeEEEEECCCccEEeeec-c-------CcceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCC------
Q 018248           76 NKVMIWDDHENRYLGELS-F-------RSEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNP------  136 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~-~-------~~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~------  136 (359)
                      +.|++||..+++.+..+. +       ......+.|+|++..++     .+..+.+|+..+++.+..+..+...      
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  157 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecC
Confidence            899999999999888764 2       12345789999998765     4678999999999888877653321      


Q ss_pred             -ceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE
Q 018248          137 -TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ  215 (359)
Q Consensus       137 -~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~  215 (359)
                       ...+.+++++...++.  ...++.+.+......    ...+...+....+.+++..++.++.++. +++|++..++...
T Consensus       158 ~~~~~~~~~dg~~~~v~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  230 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVA--FGTEGTPEITHTEVF----HPEDEFLINHPAYSQKAGRLVWPTYTGK-IHQIDLSSGDAKF  230 (355)
T ss_dssp             TTEEEEEETTSCEEEEE--CCSSSCCEEEECCCC----SCTTSCBCSCCEEETTTTEEEEEBTTSE-EEEEECTTSSCEE
T ss_pred             CcceEEEcCCCCEEEEE--ecCCCeEEEEecccc----cceecceeeeccccCCCCeEEEecCCCe-EEEEecCCCcEEE
Confidence             1223344444332221  111222222111110    1233445666788888888999999999 9999998775432


Q ss_pred             Ee--ecC--------CCCcceEEEEecCCCCEEEEEcCC----------CcEEEEEccCCCCCCCCCccccCCCCCccCC
Q 018248          216 EM--RRG--------AERAEIYSLAFSSNAQWLAASSDK----------GTVHVFGLKVDSGSPGTSKLHSASEPNLSSK  275 (359)
Q Consensus       216 ~~--~~~--------~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  275 (359)
                      .-  ..+        ........+++++++..++....+          ..|.+||..+++..                 
T Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~-----------------  293 (355)
T d2bbkh_         231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-----------------  293 (355)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----------------
T ss_pred             EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE-----------------
Confidence            11  110        011223457889999887765433          36889998887611                 


Q ss_pred             CCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE--EEEEecCCeEEEEEeCC
Q 018248          276 NSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT--IVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~v~~~~~  338 (359)
                                      ..         +.. ...+..++|+|||+.  +++++.||.|++|++..
T Consensus       294 ----------------~~---------~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         294 ----------------AK---------FEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             ----------------EE---------EEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             ----------------EE---------ecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence                            00         111 124578999999973  45566799999998765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=6.6e-16  Score=128.73  Aligned_cols=234  Identities=13%  Similarity=0.083  Sum_probs=154.0

Q ss_pred             eEEEEEccCCCEEEEe----------c-CCceEEEEcCCCcceeeeecccCC----CCceeEEEEeccCCEEEEEecCCC
Q 018248            9 IHHLALNQDHGCFATG----------T-ETGFRVYLSDPYKPIMRRDFDRNP----RGGTQLVSMLFRSNIICLVNSGPH   73 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~----------~-d~~i~iw~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~   73 (359)
                      +..++|||||++|++.          . ++.|++||+.+++..........+    ......+.++++++.+++...+  
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--  126 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--  126 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS--
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC--
Confidence            3478999999988764          3 678999999987765444332111    1223457899999988877655  


Q ss_pred             CCCeEEEEECCCccEEeeeccCcce--------eEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeee
Q 018248           74 QSNKVMIWDDHENRYLGELSFRSEV--------KNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCD  141 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (359)
                      .+..+.+|+..+++.+..+......        ..+.+++++..+.    .++.+.+++......     .+...+....
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  201 (355)
T d2bbkh_         127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPA  201 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCE
T ss_pred             CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeecc
Confidence            4689999999999988877633222        2344445444333    233344443322211     1222233455


Q ss_pred             eecCCCccEEEecCCCCeeEEEEecCCeeeEEeec---c----------cccccEEEEccCCcEEEEEeCC---------
Q 018248          142 VSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA---H----------ASRIASIAMTLDGRFVATASSK---------  199 (359)
Q Consensus       142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~---~----------~~~i~~~~~s~~~~~l~~~~~d---------  199 (359)
                      +..++..  ++. .+.++.+++|+........+..   +          ......++++|++..++....+         
T Consensus       202 ~~~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  278 (355)
T d2bbkh_         202 YSQKAGR--LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  278 (355)
T ss_dssp             EETTTTE--EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             ccCCCCe--EEE-ecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCC
Confidence            6665554  333 2368899998887654433221   1          1234568899999987766543         


Q ss_pred             -CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC--EEEEEcCCCcEEEEEccCCC
Q 018248          200 -GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ--WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       200 -g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~  256 (359)
                       .. |.+||..+++.+..+..   ...+.+++|+|||+  ++++++.|+.|+|||+++++
T Consensus       279 ~~~-v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         279 SRF-VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEE-EEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCe-EEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence             25 99999999999988874   35688999999998  45677789999999999987

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=1.3e-15  Score=127.82  Aligned_cols=232  Identities=8%  Similarity=0.018  Sum_probs=152.9

Q ss_pred             EEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccCCCCce-------eEEEEeccCCEEEEEecCC
Q 018248           11 HLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRNPRGGT-------QLVSMLFRSNIICLVNSGP   72 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~~~~~~~   72 (359)
                      .++|+|||++|+++.           ++.|.+||..+++.......   +....       ..+.++++++.+.+.... 
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-  145 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL---PDAPRFDVGPYSWMNANTPNNADLLFFQFA-  145 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec---CCcceeEeccCCCcEEEEeCCCcEEEEEEc-
Confidence            689999999998864           46799999998876644432   22222       335566666665554432 


Q ss_pred             CCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCC----Cceeeeeec
Q 018248           73 HQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVN----PTGLCDVSQ  144 (359)
Q Consensus        73 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~  144 (359)
                       .++.+.+|+....+.....   ....++.++|++..++    .|+.+.+|+...++..........    ........+
T Consensus       146 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (373)
T d2madh_         146 -AGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             -CCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEE
Confidence             3577888887776655443   3456788999886543    899999999988777665543221    122233344


Q ss_pred             CCCccEEEecCCCCeeEEEEecCCeeeEEe---ec----------ccccccEEEEccCCcEEE----------EEeCCCC
Q 018248          145 NAGPMVMACPGLLKGQVRVEDYGTKKSKYI---TA----------HASRIASIAMTLDGRFVA----------TASSKGT  201 (359)
Q Consensus       145 ~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~---~~----------~~~~i~~~~~s~~~~~l~----------~~~~dg~  201 (359)
                      +++..+++.  ..++.+.+++.........   ..          .......++++|++..++          +...++.
T Consensus       222 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  299 (373)
T d2madh_         222 NKSGRIVWP--VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             CCCceEEEe--cCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe
Confidence            444444443  2567777766554322111   11          112334556666666544          4455667


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE--EEEEcCCCcEEEEEccCCC
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW--LAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~iw~~~~~~  256 (359)
                       +.+||..+++.+..+.   +...+..++|+|||+.  +++++.|++|+|||+.+++
T Consensus       300 -v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         300 -VTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             -EEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence             9999999999998887   3467899999999984  4678899999999999987

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=5e-14  Score=117.91  Aligned_cols=277  Identities=7%  Similarity=-0.070  Sum_probs=171.9

Q ss_pred             CCCCceEEEEEccCCCEE--EE-ec-CCc--eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEec-------
Q 018248            4 PDPITIHHLALNQDHGCF--AT-GT-ETG--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS-------   70 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l--~~-~~-d~~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------   70 (359)
                      .+.++...++..++++..  +. .. ++.  +.+||.++++......   ++.  ...+.+++++..+++.+.       
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~---~~~--~~~~a~spDg~~i~~~~~~~~~~~~   91 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL---GAF--LSLAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE---ECT--TCEEEECTTSSCEEEEEEEETTTTS
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe---CCC--CCcceECCCCCEEEEEcccCccccc
Confidence            345556666778888864  32 23 455  5566777765543333   223  235789999998887652       


Q ss_pred             CCCCCCeEEEEECCCccEEeeec-cC-------cceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCce
Q 018248           71 GPHQSNKVMIWDDHENRYLGELS-FR-------SEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTG  138 (359)
Q Consensus        71 ~~~~d~~i~iwd~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~  138 (359)
                      +. .|+.|.+||..+++.+..+. +.       .....++|+|||++++    .++.+.+||+.+++....+..+...  
T Consensus        92 g~-~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--  168 (368)
T d1mdah_          92 GK-RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--  168 (368)
T ss_dssp             SS-EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--
T ss_pred             cc-cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--
Confidence            11 46889999999999888775 21       2345789999998776    5789999999999998888765432  


Q ss_pred             eeeeecCCCccEEEecCCCCeeEEEEecCCeee-------EEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248          139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-------KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG  211 (359)
Q Consensus       139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~  211 (359)
                        .+.+.++..+++  .+.||.+.++.......       .....+...+..+.+.+++..+.+.  .+. +.+++...+
T Consensus       169 --~~~~~~~~~~v~--~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~-v~~~~~~~~  241 (368)
T d1mdah_         169 --HIHPGAAATHYL--GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASS-ILQGDIPAA  241 (368)
T ss_dssp             --CCEEEETTEEEC--CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSC-CEEEECCSS
T ss_pred             --eEccCCCceEEE--EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCC-EEEEeecCC
Confidence              233444443333  34566666644432111       1122344556677888888766554  445 777777665


Q ss_pred             cEEEEeecCC----------CCcceEEEEecCCCCEEEEEcCC---------CcEEEEEccCCCCCCCCCccccCCCCCc
Q 018248          212 SLLQEMRRGA----------ERAEIYSLAFSSNAQWLAASSDK---------GTVHVFGLKVDSGSPGTSKLHSASEPNL  272 (359)
Q Consensus       212 ~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~  272 (359)
                      ..........          .......+++++++..++....+         ..|.+||..+++...             
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~-------------  308 (368)
T d1mdah_         242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-------------  308 (368)
T ss_dssp             CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-------------
T ss_pred             ceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE-------------
Confidence            5443222110          01123457888988877655322         248889988876210             


Q ss_pred             cCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE-E-EEEecCCeEEEEEeCC
Q 018248          273 SSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT-I-VIVGLDGSYYKCEFDP  338 (359)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l-~~~~~dg~i~v~~~~~  338 (359)
                                          .         +. ....+..++|+|||+. | +++..|+.|++|+...
T Consensus       309 --------------------~---------~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         309 --------------------P---------IS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             --------------------C---------CE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             --------------------E---------ec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence                                0         00 0124567999999974 3 4555689999997765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=1.8e-13  Score=114.50  Aligned_cols=234  Identities=7%  Similarity=-0.004  Sum_probs=146.2

Q ss_pred             EEEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccC----CCCceeEEEEeccCCEEEEEecCCCC
Q 018248           10 HHLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRN----PRGGTQLVSMLFRSNIICLVNSGPHQ   74 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~~   74 (359)
                      ..++|+|||+.|++.+           |+.|++||..+++......+..+    .......++++++++.+++...   .
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~---~  144 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF---G  144 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC---S
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC---C
Confidence            3589999999998743           56799999998876654443200    1122345789999999887654   3


Q ss_pred             CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEec------cCCCceeeeeecCC
Q 018248           75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIET------VVNPTGLCDVSQNA  146 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~  146 (359)
                      ++.+.+||+.+++.+..+....... +...+...+++  .||.+.++++...........      +........+.++ 
T Consensus       145 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  222 (368)
T d1mdah_         145 SSAAAGLSVPGASDDQLTKSASCFH-IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP-  222 (368)
T ss_dssp             SSCEEEEEETTTEEEEEEECSSCCC-CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT-
T ss_pred             CCeEEEEECCCCcEeEEeeccCcce-EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC-
Confidence            6999999999999988876332221 11122223333  788888888755433222211      1111122333333 


Q ss_pred             CccEEEecCCCCeeEEEEecCCeeeEEeec-------------ccccccEEEEccCCcEEEEEeCC---------CCeEE
Q 018248          147 GPMVMACPGLLKGQVRVEDYGTKKSKYITA-------------HASRIASIAMTLDGRFVATASSK---------GTLIR  204 (359)
Q Consensus       147 ~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~d---------g~~i~  204 (359)
                       ...+..   ..+.+++.+........+..             .......++++|++..++....+         .. |.
T Consensus       223 -g~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~-v~  297 (368)
T d1mdah_         223 -GMLVWA---VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN-TS  297 (368)
T ss_dssp             -TEEEEC---BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE-EE
T ss_pred             -cEEEEe---cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce-EE
Confidence             333433   24455554443322222110             11234568899998877655322         24 88


Q ss_pred             EEEcCCCcEEEEeecCCCCcceEEEEecCCCC--EEEEEcCCCcEEEEEccCCC
Q 018248          205 VFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ--WLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~  256 (359)
                      +||..+++.+..+..   ...+.+++|+|||+  +++++..++.|+|||..+++
T Consensus       298 v~D~~t~~~~~~~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         298 SVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EEECCCCcEeEEecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            999999999888774   35788999999997  34667788999999999987

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.56  E-value=2.7e-15  Score=125.46  Aligned_cols=238  Identities=9%  Similarity=-0.028  Sum_probs=160.1

Q ss_pred             CCCceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-----C---
Q 018248            5 DPITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-----Q---   74 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-----~---   74 (359)
                      |...+....++|||++|.+..  ++.|.++|+++++......+  .+......++++++++...++..+..     .   
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i--P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI--PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec--CCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            455667777789999996665  88899999999876655555  34667888899998886544433211     0   


Q ss_pred             -------CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeee
Q 018248           75 -------SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVS  143 (359)
Q Consensus        75 -------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (359)
                             ...+..+|..+.+...++........+.++|+|++++    ....+..++..+.+....+.... ......++
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC-ccceEEEe
Confidence                   1234668888888888888777889999999999877    22334444444443333332221 12345677


Q ss_pred             cCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEE-EeCCCCeEEEEEcCCCcE--------
Q 018248          144 QNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVAT-ASSKGTLIRVFNTMDGSL--------  213 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~~i~iwd~~~~~~--------  213 (359)
                      ++++.  +.. + .++.+.++.... +.+..+...+. ...+.++|||+++++ +..+++ |.+||+.+.+.        
T Consensus       227 ~dGk~--~~v-~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~  300 (441)
T d1qnia2         227 KAGNF--KTI-G-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIEL  300 (441)
T ss_dssp             HTTCC--BCC-T-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCG
T ss_pred             cCCCE--EEe-C-CCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCc-EEEEEeehhhhHhhccCCc
Confidence            88875  333 3 356677765544 55666666554 578999999998765 557888 99999865221        


Q ss_pred             ----EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          214 ----LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       214 ----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                          ..+..   ..-.....+|+++|..+.+...|..|..|++..
T Consensus       301 ~~~~~~~~~---~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~  342 (441)
T d1qnia2         301 RDTIVAEPE---LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD  342 (441)
T ss_dssp             GGGEEECCB---CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEEeecc---cccCcccceecCCceEEEcccccceEEEeccch
Confidence                11111   112345678999999999999999999999863

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.51  E-value=2.3e-12  Score=107.63  Aligned_cols=236  Identities=11%  Similarity=0.070  Sum_probs=151.6

Q ss_pred             CEEEEEecCCCCCCeEEEEECCCccEEeeec-c------------------------------CcceeEEEEecceeEEE
Q 018248           63 NIICLVNSGPHQSNKVMIWDDHENRYLGELS-F------------------------------RSEVKNVRLRRDRIVVV  111 (359)
Q Consensus        63 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~------------------------------~~~v~~~~~~~~~~~~~  111 (359)
                      .+.++++++  .+|.|++|++.+++.+.++. .                              .........+|||++++
T Consensus        10 e~y~f~Sgg--~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lf   87 (441)
T d1qnia2          10 EYYGFWSGG--HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLF   87 (441)
T ss_dssp             SEEEEEECB--TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEE
T ss_pred             CEEEEEeCC--CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEE
Confidence            467777777  47999999999998887763 1                              11223344578999886


Q ss_pred             ----ecCeEEEEEcccceeeeeEecc-CCCceeeeeecCCCccEEEecCCCCe-----------------eEEEEecC-C
Q 018248          112 ----LNQKVYVYNFTDLKLVDQIETV-VNPTGLCDVSQNAGPMVMACPGLLKG-----------------QVRVEDYG-T  168 (359)
Q Consensus       112 ----~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~-----------------~v~~~~~~-~  168 (359)
                          .+++|.++|+.+++....+... ......++++|+++..++++.+. +.                 .+...+.. .
T Consensus        88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccceEEeecCccc
Confidence                7789999999999888777643 44566789999999877776332 21                 11222322 2


Q ss_pred             eeeEEeecccccccEEEEccCCcEEEEEeCC-----------------------------------------CCeEEEEE
Q 018248          169 KKSKYITAHASRIASIAMTLDGRFVATASSK-----------------------------------------GTLIRVFN  207 (359)
Q Consensus       169 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------------------------------------g~~i~iwd  207 (359)
                      .....+.. ......+.++|+|+++++.+.+                                         +. +.+++
T Consensus       167 ~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v-~vvd~  244 (441)
T d1qnia2         167 DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV-PVVDG  244 (441)
T ss_dssp             SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC-CEEEC
T ss_pred             eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc-EEEEc
Confidence            33333332 3457889999999998877643                                         23 44444


Q ss_pred             cCCCcEEEEeecCCCCcceEEEEecCCCCEEEE-EcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEe
Q 018248          208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA-SSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFI  286 (359)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (359)
                      ....+.+..+..+   .....+.++|||+++++ +..+++|.|||+++-...-.               +.     +.+.
T Consensus       245 ~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~---------------~~-----~~~~  301 (441)
T d1qnia2         245 RGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE---------------DK-----IELR  301 (441)
T ss_dssp             SSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT---------------TS-----SCGG
T ss_pred             ccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh---------------cc-----CCcc
Confidence            4455556666542   34578999999998754 56889999999986431100               00     0000


Q ss_pred             eeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248          287 RGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD  337 (359)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~  337 (359)
                      ...   ..+.+       .--+ ..-.+|.++|+.+.+...|..|..|+++
T Consensus       302 ~~~---~~~~~-------~glg-plh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         302 DTI---VAEPE-------LGLG-PLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             GGE---EECCB-------CCSC-EEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             eEE---Eeecc-------cccC-cccceecCCceEEEcccccceEEEeccc
Confidence            000   00000       0001 2335899999988988899999999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=6.8e-12  Score=108.35  Aligned_cols=99  Identities=10%  Similarity=-0.001  Sum_probs=77.1

Q ss_pred             CCCCceEEEEEccCCCEEEEec----------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC
Q 018248            4 PDPITIHHLALNQDHGCFATGT----------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH   73 (359)
Q Consensus         4 ~h~~~v~~~~~s~~g~~l~~~~----------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~   73 (359)
                      .|...|.++.|||||++|+.++          ++.+.|||+++++..   .+. .|...+..+.|+|+++.++++.    
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~---~l~-~~~~~~~~~~~SPDG~~ia~~~----  130 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEE-RIPNNTQWVTWSPVGHKLAYVW----  130 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSS-CCCTTEEEEEECSSTTCEEEEE----
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc---ccc-cCCccccccccccCcceeeEee----
Confidence            3567899999999999998875          356889999976543   233 5688899999999999999976    


Q ss_pred             CCCeEEEEECCCccEEeeec-c------------------CcceeEEEEecceeEEE
Q 018248           74 QSNKVMIWDDHENRYLGELS-F------------------RSEVKNVRLRRDRIVVV  111 (359)
Q Consensus        74 ~d~~i~iwd~~~~~~~~~~~-~------------------~~~v~~~~~~~~~~~~~  111 (359)
                       ++.+.+|+..+++..+... .                  .+....+.|+|||+.++
T Consensus       131 -~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia  186 (470)
T d2bgra1         131 -NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA  186 (470)
T ss_dssp             -TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred             -cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccc
Confidence             6899999998887665443 1                  12345688999999887

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=3.4e-10  Score=90.23  Aligned_cols=236  Identities=11%  Similarity=0.184  Sum_probs=157.4

Q ss_pred             ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeeccc-C----CCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDR-N----PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~-~----h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      .-..|+++++|+++++-. ++.|++||.+. +..  ..+.. +    .......+.+..+....+++..+  .++.|..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS--PTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG--GGCEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEE--EEecccCCCcccccccccccccccccccceeccC--Cccccccc
Confidence            457899999999888866 88899999763 222  22210 0    11122334444454444444433  35788888


Q ss_pred             ECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccC--CCceeeeeecCCCccEEEec
Q 018248           82 DDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVV--NPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        82 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  154 (359)
                      + ..++....+.  .......+++.+++.+++   ..+.+.+++. +++.+..+....  .....+++.+++  .++++ 
T Consensus        99 ~-~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g--~i~v~-  173 (279)
T d1q7fa_          99 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ--EIFIS-  173 (279)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS--EEEEE-
T ss_pred             c-ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccce--eEEee-
Confidence            7 4677776665  445678899999988777   4567888875 566666664332  223345555554  33443 


Q ss_pred             CCCCeeEEEEecCCeeeEEee--cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          155 GLLKGQVRVEDYGTKKSKYIT--AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      ....+.|++++.+++.+..+-  +.......|++.++|+++++-.. ++. |.+|+ .+|+.+..+...........+++
T Consensus       174 d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~-v~~f~-~~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         174 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred             eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcE-EEEEC-CCCCEEEEEeCCCCCCCEeEEEE
Confidence            445778999999988877763  34445789999999997766544 446 89998 57888888765434456899999


Q ss_pred             cCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          232 SSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       232 s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .|||+++++ +.++.|++|+.....
T Consensus       252 ~~dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         252 MDDGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             eCCCcEEEE-eCCCeEEEEEeeeec
Confidence            999986654 568899999998765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=4.1e-10  Score=89.25  Aligned_cols=219  Identities=13%  Similarity=0.063  Sum_probs=138.2

Q ss_pred             ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248           28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR  107 (359)
Q Consensus        28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  107 (359)
                      .|.|.|.+.........    +...+...+|+|+++.++++.... ....+.+.+...+.......+........|+|++
T Consensus        20 ~l~i~d~dG~~~~~l~~----~~~~~~sP~wSPDGk~IAf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR----SPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETTSCSCEEEEE----ESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCCcEEEec----CCCceeeeEECCCCCEEEEEEeec-cCcceeeeecccCceeEEeeeecccccceecCCC
Confidence            36676776544443332    256677789999999999987654 4567888887777766666678888899999999


Q ss_pred             eEEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccc
Q 018248          108 IVVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI  181 (359)
Q Consensus       108 ~~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i  181 (359)
                      ..++    .++  .+..+........... ..........++++++..+++........+.+.+........+.......
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~  173 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN  173 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEE
T ss_pred             CeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccceeeecccccc
Confidence            8877    233  3333333333222222 22233334566677666544432212224444666666666666667777


Q ss_pred             cEEEEccCCcEEEEEeCCCCe--EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC---CCcEEEEEccCCC
Q 018248          182 ASIAMTLDGRFVATASSKGTL--IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD---KGTVHVFGLKVDS  256 (359)
Q Consensus       182 ~~~~~s~~~~~l~~~~~dg~~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~  256 (359)
                      ....|+|+++.++..+.++..  +.+.+...+.. ..+.   .........|||||+.|+..+.   ...|++++++.+.
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~---~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS---STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC---CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc-eEee---cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            888999999988877655421  44445444443 2232   3456678899999999875543   3468888887755

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=7e-11  Score=101.85  Aligned_cols=141  Identities=16%  Similarity=0.040  Sum_probs=103.7

Q ss_pred             EEEEEccCCCEEEEecCCceEEEEcCCCcceeee---ecccCCCCceeEEEEeccCCEEEEEecCCC-----CCCeEEEE
Q 018248           10 HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR---DFDRNPRGGTQLVSMLFRSNIICLVNSGPH-----QSNKVMIW   81 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-----~d~~i~iw   81 (359)
                      ..+.|.+|++++.. .++.+.+||..+++.....   .+. .|...+..+.|+|+++.+++.+....     .++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTT-TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhh-hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            46789999987754 4788999999988764322   222 45677899999999999998763210     35789999


Q ss_pred             ECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEecc------------------CCCceeee
Q 018248           82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETV------------------VNPTGLCD  141 (359)
Q Consensus        82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~------------------~~~~~~~~  141 (359)
                      |+.+++......++..+..+.|+|||+.++  .++.+++|+..+++........                  ......+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            999987655444888999999999999888  9999999999877655433211                  12234567


Q ss_pred             eecCCCccEEE
Q 018248          142 VSQNAGPMVMA  152 (359)
Q Consensus       142 ~~~~~~~~~l~  152 (359)
                      |+|+++.++.+
T Consensus       178 wSPDGk~ia~~  188 (470)
T d2bgra1         178 WSPNGTFLAYA  188 (470)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCcccee
Confidence            99999874443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.39  E-value=1e-09  Score=90.92  Aligned_cols=276  Identities=11%  Similarity=-0.007  Sum_probs=152.1

Q ss_pred             EEEec---CCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc-cEEeee--
Q 018248           21 FATGT---ETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN-RYLGEL--   92 (359)
Q Consensus        21 l~~~~---d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~--   92 (359)
                      |.+|+   .+.|.++.++...  ..............+..++++++++.+..+.     .+.+..|.+... ......  
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~-----~~~~~~~~i~~~~~~~~~~~~   79 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-----MKKWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-----BTEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe-----CCcEEEEEEeCCCCeEEEeee
Confidence            55564   4567666655333  2222221112345567789999998887665     256767765432 222222  


Q ss_pred             ccCcceeEEEEecceeE--EE----ecCeEEEEEccc-ce------------e---eeeEe-ccCCCceeeeeecCCCcc
Q 018248           93 SFRSEVKNVRLRRDRIV--VV----LNQKVYVYNFTD-LK------------L---VDQIE-TVVNPTGLCDVSQNAGPM  149 (359)
Q Consensus        93 ~~~~~v~~~~~~~~~~~--~~----~d~~i~i~d~~~-~~------------~---~~~~~-~~~~~~~~~~~~~~~~~~  149 (359)
                      ........+.++++++.  ++    ..+.|..+.+.. +.            .   ..... .....+..+.++|+++.+
T Consensus        80 ~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l  159 (365)
T d1jofa_          80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL  159 (365)
T ss_dssp             ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEE
Confidence            23345567777888763  33    345555554311 11            1   11111 111234578999999876


Q ss_pred             EEEecCCCCeeEEEEecC--Ceee--EEe--ecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEE--EE---e
Q 018248          150 VMACPGLLKGQVRVEDYG--TKKS--KYI--TAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLL--QE---M  217 (359)
Q Consensus       150 ~l~~~g~~d~~v~~~~~~--~~~~--~~~--~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~--~~---~  217 (359)
                      +++..  ....|.++...  +...  ...  .........++|+|+++++.+..+ ++. |.+|++..++..  ..   .
T Consensus       160 ~v~d~--g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~-V~v~~~~~~~~~~~~~~~~~  236 (365)
T d1jofa_         160 YSADL--TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             EEEET--TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEE
T ss_pred             EEeeC--CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE-EEEEEecCCCceEEEEeeee
Confidence            55542  34466664332  2221  111  123456789999999998877665 555 999998765422  11   1


Q ss_pred             ec------------CCCCcceEEEEecCCCCEEEEEcC------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248          218 RR------------GAERAEIYSLAFSSNAQWLAASSD------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA  279 (359)
Q Consensus       218 ~~------------~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (359)
                      ..            .........+.++|||++|+++..      .+.|..|++......                     
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~---------------------  295 (365)
T d1jofa_         237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI---------------------  295 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE---------------------
T ss_pred             ccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce---------------------
Confidence            10            001224567899999999987642      123666666653311                     


Q ss_pred             eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc-cCCEEEEEec-CCeEEEEEeCCCC
Q 018248          280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR-QNNTIVIVGL-DGSYYKCEFDPMK  340 (359)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-dg~i~v~~~~~~~  340 (359)
                      .. .       .....       ..........++|+| +|++|+++.. ++.|.+|+++.+.
T Consensus       296 ~~-~-------~~~~~-------~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         296 EK-Q-------LFLSP-------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EE-E-------EEEEE-------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ee-E-------eEeeE-------EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            00 0       00000       000123456789998 7898887765 7999999997643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.37  E-value=1.4e-10  Score=96.26  Aligned_cols=247  Identities=8%  Similarity=0.088  Sum_probs=142.4

Q ss_pred             CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ....+..|+|+|++++|.++..+.+..|.++........... ........+.++++++.+.++.... ..+.+..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~~~v~~a~~-~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRAIFLLAAKQ-PPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEEEEEEECSS-TTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee-cCCCCcEEEEECCCCCEEEEEEecC-CCCEEEEeEcc
Confidence            345567899999999998888777888877643322211110 0123334455666666554443322 23555544322


Q ss_pred             C-------------ccE---Eeee--ccCcceeEEEEecceeEEE----ecCeEEEEEccc-ceee--eeEec--cCCCc
Q 018248           85 E-------------NRY---LGEL--SFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTD-LKLV--DQIET--VVNPT  137 (359)
Q Consensus        85 ~-------------~~~---~~~~--~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~--~~~~~--~~~~~  137 (359)
                      .             ++.   ....  +....+.++.|+|+|++++    ....|.+|+... +...  .....  .....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1             111   1111  1223478999999998777    456888888643 2221  12211  22345


Q ss_pred             eeeeeecCCCccEEEecCCCCeeEEEEecCCee---eEEee-----------------cccccccEEEEccCCcEEEEEe
Q 018248          138 GLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK---SKYIT-----------------AHASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       138 ~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~---~~~~~-----------------~~~~~i~~~~~s~~~~~l~~~~  197 (359)
                      ..++++|+++..+++.  ..++.|.+++.+...   .....                 .+......+.++|||++|+++.
T Consensus       196 r~i~f~pdg~~~yv~~--e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         196 RWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCceEEEec--cCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            6689999998765554  457888887665422   11111                 1112345789999999998874


Q ss_pred             C------CCCeEEEEEcCCCcEEEE----eecCCCCcceEEEEecC-CCCEEEEEc-CCCcEEEEEccCCC
Q 018248          198 S------KGTLIRVFNTMDGSLLQE----MRRGAERAEIYSLAFSS-NAQWLAASS-DKGTVHVFGLKVDS  256 (359)
Q Consensus       198 ~------dg~~i~iwd~~~~~~~~~----~~~~~~~~~i~~~~~s~-~~~~l~~~~-~dg~i~iw~~~~~~  256 (359)
                      .      .+. |..|++.....+..    ............++++| +|++|+++. .++.|.+|+++...
T Consensus       274 r~~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         274 RANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ccCCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            3      223 66677654322211    11111223567799998 899887764 67899999987643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.2e-09  Score=83.97  Aligned_cols=218  Identities=14%  Similarity=0.030  Sum_probs=131.9

Q ss_pred             CCCceEEEEEccCCCEEEEec--CCc--eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248            5 DPITIHHLALNQDHGCFATGT--ETG--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI   80 (359)
Q Consensus         5 h~~~v~~~~~s~~g~~l~~~~--d~~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i   80 (359)
                      +...+.+.+|||||+.||...  .+.  +.+.+...+......    .+........+++++..+++..... ....+..
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~i~~~~~~~-~~~~~~~  111 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA----SFPRHNGAPAFSPDGSKLAFALSKT-GSLNLYV  111 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE----CCSSCEEEEEECTTSSEEEEEECTT-SSCEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe----eeecccccceecCCCCeeeEeeecC-Cccceee
Confidence            345677899999999998776  332  555565554433222    2467778889999999998877543 2234444


Q ss_pred             EECCCccEEeeeccCcceeEEEEecceeEEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248           81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP  154 (359)
Q Consensus        81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  154 (359)
                      +.....................+++++..+.    .++  .|.+.++..+... .+...........++|+++.++....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         112 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             cccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEee
Confidence            4444444444444444455556666654443    333  5666666554332 22233344456788999887554443


Q ss_pred             CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248          155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF  231 (359)
Q Consensus       155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  231 (359)
                      ......+.+.+......+ ...+........|||||+.|+..+..   .. |+++++..+... .+..  ..+.+...+|
T Consensus       191 ~~~~~~i~~~~~~~~~~~-~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~-l~~~~~dg~~~~-~lt~--~~g~~~~p~W  265 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSV-LNLVSTDGRFKA-RLPA--TDGQVKFPAW  265 (269)
T ss_dssp             CSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEE-EEEEETTSCCEE-ECCC--SSSEEEEEEE
T ss_pred             cCCceeeeEeecccccce-EeecCccccceEECCCCCEEEEEEcCCCCcE-EEEEECCCCCEE-EEeC--CCCcEEeEEe
Confidence            222223333444444443 33455667788999999988765543   34 889998766554 4443  4567888999


Q ss_pred             cC
Q 018248          232 SS  233 (359)
Q Consensus       232 s~  233 (359)
                      ||
T Consensus       266 SP  267 (269)
T d2hqsa1         266 SP  267 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            98

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.28  E-value=7.8e-09  Score=83.19  Aligned_cols=225  Identities=9%  Similarity=0.021  Sum_probs=139.1

Q ss_pred             CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      ..+..++++|||+++++.. ++.|..|+.+.. ......    ....+..+++.++++.++...    .++.+..++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~----~~~~~~gla~~~dG~l~v~~~----~~~~~~~~~~~~   98 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT----VEGKVSGLAFTSNGDLVATGW----NADSIPVVSLVK   98 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE----CSSEEEEEEECTTSCEEEEEE----CTTSCEEEEEEC
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEc----CCCCcceEEEcCCCCeEEEec----CCceEEEEEecc
Confidence            4578899999999999888 888877776532 222223    357788899998888555544    346666666433


Q ss_pred             --ccEE--eeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec--------cCCCceeeeeecCCCccE
Q 018248           86 --NRYL--GELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET--------VVNPTGLCDVSQNAGPMV  150 (359)
Q Consensus        86 --~~~~--~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  150 (359)
                        +...  ...........+.+.+++.+++   .++.+..++...+........        .........++++++.++
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence              2222  2223446678999999998887   567888888766543322221        111122233445566554


Q ss_pred             EEecCCCCeeEEEEecCCe-ee--EEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE
Q 018248          151 MACPGLLKGQVRVEDYGTK-KS--KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY  227 (359)
Q Consensus       151 l~~~g~~d~~v~~~~~~~~-~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~  227 (359)
                      ++.  ...+.|+.++.... ..  ............++++++|++.++...++. |..++. .++..........-...+
T Consensus       179 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p-~G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         179 VSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             EEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEE
T ss_pred             eec--CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECC-CCCEEEEEecCCCCCCce
Confidence            443  34666666444331 11  111123345678999999998888778888 998875 455433333221334689


Q ss_pred             EEEe---cCCCCEEEEEcCC
Q 018248          228 SLAF---SSNAQWLAASSDK  244 (359)
Q Consensus       228 ~~~~---s~~~~~l~~~~~d  244 (359)
                      +++|   ++|++.|+.++..
T Consensus       255 ~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEECCSTTTTTEEEEEECT
T ss_pred             EEEEcCCCCCCCEEEEECCC
Confidence            9999   6788888766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=1.8e-08  Score=80.06  Aligned_cols=233  Identities=15%  Similarity=0.204  Sum_probs=146.4

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC-------cceeEEEEecc-eeEEE----ecCeEEEEE
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR-------SEVKNVRLRRD-RIVVV----LNQKVYVYN  120 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~~~----~d~~i~i~d  120 (359)
                      ...+++.++++.. ++..   .++.|++|| .+++.+..+...       .....+.+.++ +..++    .++.|..++
T Consensus        25 P~gvavd~dg~i~-VaD~---~n~rI~v~d-~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          25 PSGVAVNAQNDII-VADT---NNHRIQIFD-KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEEEEECTTCCEE-EEEG---GGTEEEEEC-TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccEEEEcCCCCEE-EEEC---CCCEEEEEe-CCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            4567777766633 3322   358899999 457777666411       12344555443 33333    456777777


Q ss_pred             cccceeeeeEecc-CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee--cccccccEEEEccCCcEEEEEe
Q 018248          121 FTDLKLVDQIETV-VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT--AHASRIASIAMTLDGRFVATAS  197 (359)
Q Consensus       121 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~  197 (359)
                      . .++....+... ......+++.+++.  ++++ ....+.+.+.+.+++.+..+.  .+......+++.++++.+++..
T Consensus       100 ~-~g~~~~~~~~~~~~~p~~~avd~~G~--i~v~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         100 Q-YGQFVRKFGATILQHPRGVTVDNKGR--IIVV-ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             T-TSCEEEEECTTTCSCEEEEEECTTSC--EEEE-ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             c-cccceeecCCCcccccceeccccCCc--EEEE-eeccceeeEeccCCceeecccccccccccceeeeccceeEEeeec
Confidence            5 56555555322 22334566666654  3333 234566777888887776653  3455678899999999888888


Q ss_pred             CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248          198 SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKN  276 (359)
Q Consensus       198 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
                      ..+. |++||. +++.+.++...........+++.++|+++++-.. ++.|.+|+.+ ++                    
T Consensus       176 ~~~~-V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~--------------------  232 (279)
T d1q7fa_         176 RAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQ--------------------  232 (279)
T ss_dssp             GGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SC--------------------
T ss_pred             cccc-eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CC--------------------
Confidence            8888 999995 6777777753223456789999999998777543 4568888743 22                    


Q ss_pred             CCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248          277 SSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP  338 (359)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~  338 (359)
                              ++.     .+...       ........+++.|||. |++++.+..|++|++..
T Consensus       233 --------~~~-----~~~~~-------~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         233 --------LIS-----ALESK-------VKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             --------EEE-----EEEES-------SCCSCEEEEEEETTTE-EEEEETTTEEEEEECSC
T ss_pred             --------EEE-----EEeCC-------CCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeee
Confidence                    000     11111       1113457899999986 55567789999998754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=1e-08  Score=80.49  Aligned_cols=233  Identities=10%  Similarity=-0.013  Sum_probs=137.6

Q ss_pred             CceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248            7 ITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH   84 (359)
Q Consensus         7 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~   84 (359)
                      ..-..++++++|.++++..  .+.+..++....... ..... + ......+++.++++..  ++..  ..+.+++++..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~-~-~~~p~gvav~~~g~i~--v~d~--~~~~i~~~~~~   86 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFN-G-LYQPQGLAVDGAGTVY--VTDF--NNRVVTLAAGS   86 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-ECCCC-S-CCSCCCEEECTTCCEE--EEET--TTEEEEECTTC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-EeccC-C-ccCceEEEEcCCCCEE--Eeee--eeceeeeeeec
Confidence            3457999999999777655  456666665533222 11221 1 1233456676666533  3322  34666666655


Q ss_pred             CccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248           85 ENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV  161 (359)
Q Consensus        85 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v  161 (359)
                      +...+..........++++.+++.+++   .+..+..++...................+++.++++ ++++.  ..++.|
T Consensus        87 ~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~--~~~~~i  163 (260)
T d1rwia_          87 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNNRV  163 (260)
T ss_dssp             SCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEE--GGGTEE
T ss_pred             cceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-Eeeec--cccccc
Confidence            555554444445678999999987776   456677777543322111111223345677777765 33332  345667


Q ss_pred             EEEecCCeeeEEee-cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEE
Q 018248          162 RVEDYGTKKSKYIT-AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA  240 (359)
Q Consensus       162 ~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  240 (359)
                      ..++.++.....+. ..-.....+++.++|+++++....+. |..++.... ....+... .-.....|+++++|.++++
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~-~~~~~~~~-~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-TSTVLPFT-GLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCS-CCEECCCC-SCCCEEEEEECTTCCEEEE
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCC-eEEEEccC-CCCCeEEEEEeCCCCEEEE
Confidence            77777765554443 34456688999999998877777777 888875433 23333221 2246789999999998887


Q ss_pred             EcCCCcEEEEEc
Q 018248          241 SSDKGTVHVFGL  252 (359)
Q Consensus       241 ~~~dg~i~iw~~  252 (359)
                      -..++.|+.++.
T Consensus       241 d~~~~rI~~i~~  252 (260)
T d1rwia_         241 DRGNDRVVKLTS  252 (260)
T ss_dssp             EGGGTEEEEECC
T ss_pred             ECCCCEEEEEeC
Confidence            676775554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.10  E-value=3.4e-07  Score=73.92  Aligned_cols=238  Identities=8%  Similarity=0.045  Sum_probs=144.5

Q ss_pred             eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248            9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      +..++|.++|+++++-. .+.|..|+.+..+..... .  ........+++.++++.++...++....+.+...+...+.
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~--~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-e--CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            46889999999777766 788888887754333221 1  1244567788888776655443321123456666655555


Q ss_pred             EEeeec---cCcceeEEEEecceeEEEe---------cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           88 YLGELS---FRSEVKNVRLRRDRIVVVL---------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        88 ~~~~~~---~~~~v~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ......   .......+.+.++|.+.+.         .+.+..++.. ++.+..+...-...+-++|+++++.++++-+ 
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~-  196 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTET-  196 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEG-
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEecc-
Confidence            444333   2345778999999987762         2345555543 3333333222223356899999887666543 


Q ss_pred             CCCeeEEEEecCC--eeeEEe-------ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC----C
Q 018248          156 LLKGQVRVEDYGT--KKSKYI-------TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA----E  222 (359)
Q Consensus       156 ~~d~~v~~~~~~~--~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~----~  222 (359)
                       ..+.|..++.+.  ......       .........+++.++|++.++....+. |.+|| .+|+.+.++....    +
T Consensus       197 -~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~P~~~~~~  273 (319)
T d2dg1a1         197 -TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILIPGRDEGH  273 (319)
T ss_dssp             -GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEECTTGGGTC
T ss_pred             -cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeCCCcCCCc
Confidence             466777765432  211111       111223567999999998888788888 99999 5799888876421    2


Q ss_pred             CcceEEEEecCCCCEEEEEcCC----CcEEEEEccC
Q 018248          223 RAEIYSLAFSSNAQWLAASSDK----GTVHVFGLKV  254 (359)
Q Consensus       223 ~~~i~~~~~s~~~~~l~~~~~d----g~i~iw~~~~  254 (359)
                      ...+++++|.+++..+++...+    +.-.||.++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         274 MLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             SCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence            2357899999988776655432    2344555444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.5e-08  Score=83.40  Aligned_cols=223  Identities=6%  Similarity=-0.030  Sum_probs=137.1

Q ss_pred             EEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-----CCCeEEEEECCCc
Q 018248           12 LALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-----QSNKVMIWDDHEN   86 (359)
Q Consensus        12 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~   86 (359)
                      ..|.+++.++....++.|.+|++.+++.........-....+....++++++.+++......     ..+.+.++|+.++
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            46889988876666889999999877654333322112345667789999999887753211     3578999999988


Q ss_pred             cEEeeec---cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccC-C-----------------Cceeeeee
Q 018248           87 RYLGELS---FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVV-N-----------------PTGLCDVS  143 (359)
Q Consensus        87 ~~~~~~~---~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~-~-----------------~~~~~~~~  143 (359)
                      +......   ....+....|+|+|+.++  .++.|++.+..++..++...... .                 .-..+.|+
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            7544332   334566789999999888  99999999886665544432211 1                 11346689


Q ss_pred             cCCCccEEEecCCCCe---------------------------------eEEEEecCCeeeEEe-------ecccccccE
Q 018248          144 QNAGPMVMACPGLLKG---------------------------------QVRVEDYGTKKSKYI-------TAHASRIAS  183 (359)
Q Consensus       144 ~~~~~~~l~~~g~~d~---------------------------------~v~~~~~~~~~~~~~-------~~~~~~i~~  183 (359)
                      |+++.++++..  .+.                                 .+.+.+.++......       ......+..
T Consensus       182 PDgk~iaf~~~--D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         182 PDGTRLAYAAI--NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             TTSSEEEEEEE--ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             CCCCeEEEEEe--cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99987444321  111                                 122222222111110       011223667


Q ss_pred             EEEccCCcEEEEEeC-CC---CeEEEEEcCCCcEEEEeecCCCCcce----EEEEecCCCCEE
Q 018248          184 IAMTLDGRFVATASS-KG---TLIRVFNTMDGSLLQEMRRGAERAEI----YSLAFSSNAQWL  238 (359)
Q Consensus       184 ~~~s~~~~~l~~~~~-dg---~~i~iwd~~~~~~~~~~~~~~~~~~i----~~~~~s~~~~~l  238 (359)
                      +.|+|++++++.... +.   . |.++|..+++....+... ..+.|    ....|+|||+.+
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~-i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSE
T ss_pred             eEEcCCCeEEEEEEccccccce-EEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCee
Confidence            899999986665432 22   3 788999999876555432 22322    345789999843

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.04  E-value=3.5e-07  Score=73.56  Aligned_cols=240  Identities=9%  Similarity=0.044  Sum_probs=141.9

Q ss_pred             ceEEEEEccCCCEEEEec--------CCceEEEEcCCCcceeeeecc-cCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248            8 TIHHLALNQDHGCFATGT--------ETGFRVYLSDPYKPIMRRDFD-RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV   78 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~--------d~~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i   78 (359)
                      ....++|.++|+++++..        ++.|..|+.+++......... ..-.+....+.+.++++.++++.    ..+.|
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad----~~~~i   94 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD----MRLGL   94 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE----TTTEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE----CCCeE
Confidence            346789999999887654        245777777765443222110 00012234577777777777665    34678


Q ss_pred             EEEECCCccEEeeec-cC----cceeEEEEecceeEEEe------------------cCeEEEEEcccceeeeeEeccCC
Q 018248           79 MIWDDHENRYLGELS-FR----SEVKNVRLRRDRIVVVL------------------NQKVYVYNFTDLKLVDQIETVVN  135 (359)
Q Consensus        79 ~iwd~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~~------------------d~~i~i~d~~~~~~~~~~~~~~~  135 (359)
                      ...+...+....... ..    ...+++.+.++|.+.+.                  .+.|+.++. .++....... ..
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~-~~  172 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA-FQ  172 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE-ES
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC-cc
Confidence            888866543322211 11    13578999999887762                  134554543 3433333222 22


Q ss_pred             CceeeeeecCCCc--cEEEecCCCCeeEEEEecC--Ceee--E---Eeec-ccccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248          136 PTGLCDVSQNAGP--MVMACPGLLKGQVRVEDYG--TKKS--K---YITA-HASRIASIAMTLDGRFVATASSKGTLIRV  205 (359)
Q Consensus       136 ~~~~~~~~~~~~~--~~l~~~g~~d~~v~~~~~~--~~~~--~---~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~~i~i  205 (359)
                      ..+-++++++++.  ..|..+.+..+.|..++..  +...  +   .+.. .......+++.++|++.++....+. |.+
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-I~~  251 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEV  251 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-EEE
Confidence            2345788887652  1222223456667664432  2211  1   1111 1223567999999998777777788 999


Q ss_pred             EEcCCCcEEEEeecCCCCcceEEEEecCCCCE-EEEEcCCCcEEEEEccCCC
Q 018248          206 FNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW-LAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~  256 (359)
                      ||...++.+..+..  ....+++++|.||++. +++.+.+|.|...++....
T Consensus       252 ~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         252 FGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            99887776666654  2357889999999974 4666777877777766544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.04  E-value=1e-06  Score=70.77  Aligned_cols=240  Identities=10%  Similarity=0.071  Sum_probs=139.5

Q ss_pred             eeEEEEeccCCEEEEEecCCC---CCCeEEEEECCCccEEeeec-----cCcceeEEEEecceeEEE---ecCeEEEEEc
Q 018248           53 TQLVSMLFRSNIICLVNSGPH---QSNKVMIWDDHENRYLGELS-----FRSEVKNVRLRRDRIVVV---LNQKVYVYNF  121 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~  121 (359)
                      ....++.++++..++......   .+++|..||..+++......     .......+.+.+++..++   ..+.|..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            344567777765554322100   24779999988776543332     123457899999986443   3456888887


Q ss_pred             ccceeeeeEeccC-C---CceeeeeecCCCccEEEecC-------------CCCeeEEEEecCCeeeEEeecccccccEE
Q 018248          122 TDLKLVDQIETVV-N---PTGLCDVSQNAGPMVMACPG-------------LLKGQVRVEDYGTKKSKYITAHASRIASI  184 (359)
Q Consensus       122 ~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~g-------------~~d~~v~~~~~~~~~~~~~~~~~~~i~~~  184 (359)
                      ............. .   ..+.+++.+++. +++.-.+             ...|.|+.++.+++..... ..-...+.+
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~-~~~~~pNGi  177 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD-TAFQFPNGI  177 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE-EEESSEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCceeEee-CCcceeeee
Confidence            5443221111111 1   124467777664 3332111             0134555555555443333 233345789


Q ss_pred             EEccCCc----EEE-EEeCCCCeEEEEEcCCCcEEE------EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          185 AMTLDGR----FVA-TASSKGTLIRVFNTMDGSLLQ------EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       185 ~~s~~~~----~l~-~~~~dg~~i~iwd~~~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      +|+|++.    .|. +-+..+. |..||+.....+.      .+.. ........+++..+|++.++....+.|.+||.+
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~-i~~~d~~~~g~~~~~~~~~~~~~-~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             EECCCCCcceeEEEEEeecccc-eEEeeccCccccceeeEEEEccc-cccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            9998764    444 4456666 8888875433222      2221 122346789999999988887778889999877


Q ss_pred             CCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEe-cCCeEE
Q 018248          254 VDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVG-LDGSYY  332 (359)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~  332 (359)
                      .+...                                          ..+..|....+.++|.||++.|++.. .+|.|+
T Consensus       256 ~g~~~------------------------------------------~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~  293 (314)
T d1pjxa_         256 GGQPK------------------------------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW  293 (314)
T ss_dssp             CBSCS------------------------------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCEEE------------------------------------------EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEE
Confidence            65421                                          11334455678899999998776654 578777


Q ss_pred             EEEeCC
Q 018248          333 KCEFDP  338 (359)
Q Consensus       333 v~~~~~  338 (359)
                      .++++.
T Consensus       294 ~~~~~~  299 (314)
T d1pjxa_         294 KFEWQR  299 (314)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            766643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.01  E-value=9.4e-08  Score=76.71  Aligned_cols=193  Identities=7%  Similarity=-0.023  Sum_probs=111.2

Q ss_pred             ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccc--ee
Q 018248           52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL--KL  126 (359)
Q Consensus        52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~  126 (359)
                      .+..+++.++++.++...    .+++|..|+.. ++..........+.+++|.++|.+++   .++.+..++....  ..
T Consensus        29 ~~e~iAv~pdG~l~vt~~----~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNH----EVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEET----TTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeC----CCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            356678888887554433    46889888844 45444445778899999999998777   5677877776432  22


Q ss_pred             eeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec---------c--cccccEEEEccCCcEEE
Q 018248          127 VDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA---------H--ASRIASIAMTLDGRFVA  194 (359)
Q Consensus       127 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~---------~--~~~i~~~~~s~~~~~l~  194 (359)
                      ..... ........+++.+++.  ++++ .+.++.+..++...........         +  ......+.++. +.+++
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~--~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~  179 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQ--YLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYV  179 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSE--EEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEE
T ss_pred             eeccccCCccccceeEEccCCC--EEee-ccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceee
Confidence            21111 1223344556666553  3444 3345666665555433322211         1  11234555543 23444


Q ss_pred             EEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248          195 TASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV  254 (359)
Q Consensus       195 ~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  254 (359)
                      +.+..+. |..++.....................++++++|+++++...++.|..++...
T Consensus       180 ~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         180 SNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EETTTTE-EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             ecCCCCe-EEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            4556666 8888876543221111000123456799999999888877888888886653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.00  E-value=3.1e-06  Score=68.10  Aligned_cols=195  Identities=12%  Similarity=0.106  Sum_probs=116.9

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE-e------cCeEEEEEcccc
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-L------NQKVYVYNFTDL  124 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~------d~~i~i~d~~~~  124 (359)
                      +..++|..+++ +.++..   ..+.|..|+..+++....+. .......++++++|.+++ .      .+.+...+....
T Consensus        42 lEG~~~D~~G~-Ly~~D~---~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFDRQGQ-LFLLDV---FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEECTTSC-EEEEET---TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEECCCCC-EEEEEC---CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            35667776666 444432   46889999987776555443 556788999999998776 2      234555554444


Q ss_pred             eeeeeEecc--CCCceeeeeecCCCccEEEecCC----CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEE-e
Q 018248          125 KLVDQIETV--VNPTGLCDVSQNAGPMVMACPGL----LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA-S  197 (359)
Q Consensus       125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~----~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~  197 (359)
                      .........  ......+++.+++. +++.....    ..+.+...+.+++.+..+...-...+.++|+|+++.|..+ +
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence            433333221  12234566777764 33321110    1234554555565555554444456789999999876555 4


Q ss_pred             CCCCeEEEEEcCCC-cEEEE----ee-cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248          198 SKGTLIRVFNTMDG-SLLQE----MR-RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK  253 (359)
Q Consensus       198 ~dg~~i~iwd~~~~-~~~~~----~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  253 (359)
                      ..+. |..|++... .....    .. ..........+++.++|++.++....+.|.+|+-+
T Consensus       197 ~~~~-I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         197 TANR-LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             GGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             cCCc-eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            5666 999987532 21111    11 01112346789999999988888888999999953

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.96  E-value=3.8e-06  Score=66.74  Aligned_cols=222  Identities=10%  Similarity=0.044  Sum_probs=136.3

Q ss_pred             EEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccC-
Q 018248           57 SMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVV-  134 (359)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~-  134 (359)
                      .|....+.+.++.-   ..+.|..||.++++. ..+..+..+.++++.+++.+++ ....+.++|..+++......... 
T Consensus        24 ~wd~~~~~l~wvDi---~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          24 TFDPASGTAWWFNI---LERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             EEETTTTEEEEEEG---GGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTT
T ss_pred             eEECCCCEEEEEEC---CCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecC
Confidence            45555666666653   348899999887754 3555677888999999998877 77789999998876543332211 


Q ss_pred             ---CCceeeeeecCCCccEEEecC--CCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEc
Q 018248          135 ---NPTGLCDVSQNAGPMVMACPG--LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNT  208 (359)
Q Consensus       135 ---~~~~~~~~~~~~~~~~l~~~g--~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~  208 (359)
                         ...+.+.+.+++. +++....  ...+.-.++......+..+...-...+.++|+++++.+..+. ..+. |..|++
T Consensus       100 ~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~-I~~~~~  177 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-LMRVPL  177 (295)
T ss_dssp             CTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-EEEEEB
T ss_pred             CCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce-eeEeee
Confidence               1234455666654 2333210  011122232222222333333334567899999998766554 4555 888886


Q ss_pred             CC------CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248          209 MD------GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS  282 (359)
Q Consensus       209 ~~------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (359)
                      ..      ++...........+....+++..+|++.++.-..+.|..||-+ ++.                         
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~-------------------------  231 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNH-------------------------  231 (295)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCE-------------------------
T ss_pred             cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcE-------------------------
Confidence            42      1111112111134568899999999988777677889999854 331                         


Q ss_pred             eeEeeeecceEEecccceeEEeecCCcEEEeeec-ccCCEEEEEec
Q 018248          283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG-RQNNTIVIVGL  327 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  327 (359)
                                       ...+++|...+++++|- ||.+.|++.++
T Consensus       232 -----------------~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         232 -----------------IARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             -----------------EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             -----------------eeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence                             12256676778999995 68788877655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.91  E-value=3.1e-07  Score=72.54  Aligned_cols=89  Identities=12%  Similarity=0.055  Sum_probs=62.0

Q ss_pred             Eecc--CCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ec-----CeEEEEEccccee
Q 018248           58 MLFR--SNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LN-----QKVYVYNFTDLKL  126 (359)
Q Consensus        58 ~~~~--~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d-----~~i~i~d~~~~~~  126 (359)
                      ++|+  ++.+++++     ++.|.+.|+.+++..+...+...+...+|+|||+.++    .+     ..|.+++..+++.
T Consensus         6 ~sPdi~G~~v~f~~-----~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-----CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             EEEEEETTEEEEEE-----TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             cCCCCCCCEEEEEe-----CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            4577  88998887     4789999999888765545778889999999999887    22     2577888776655


Q ss_pred             eeeEec------cCCCceeeeeecCCCccEE
Q 018248          127 VDQIET------VVNPTGLCDVSQNAGPMVM  151 (359)
Q Consensus       127 ~~~~~~------~~~~~~~~~~~~~~~~~~l  151 (359)
                      ......      .........|+|+++.+++
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEE
Confidence            432211      1122346788999886443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.90  E-value=5.5e-07  Score=71.03  Aligned_cols=229  Identities=9%  Similarity=-0.006  Sum_probs=127.0

Q ss_pred             EEccC--CCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCC--CCeEEEEECCCccE
Q 018248           13 ALNQD--HGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQ--SNKVMIWDDHENRY   88 (359)
Q Consensus        13 ~~s~~--g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~   88 (359)
                      ..|||  |+.+|..+++.|.+.++++++.... +   .+.+......|+|+++.++++......  ...|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~L-t---~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKI-V---SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEE-E---CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEE-e---cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            46799  9999988888888889987665422 2   235667788999999999987532111  23578888777766


Q ss_pred             Eeeecc-------CcceeEEEEecceeEEE---------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248           89 LGELSF-------RSEVKNVRLRRDRIVVV---------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA  152 (359)
Q Consensus        89 ~~~~~~-------~~~v~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (359)
                      .+....       ........|+|+++.++         ....+...+...+......   ..... ..+.+++...+..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~  156 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPAT-HILFADGRRVIGR  156 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCS-EEEEETTEEEEEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccc-eeeecCCCeEEEe
Confidence            543322       13456788999998877         1223555565444432221   11112 2333333322221


Q ss_pred             ecCCCC----------eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCC-eEEEEEcCCCcEEEEeecCC
Q 018248          153 CPGLLK----------GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGT-LIRVFNTMDGSLLQEMRRGA  221 (359)
Q Consensus       153 ~~g~~d----------~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-~i~iwd~~~~~~~~~~~~~~  221 (359)
                      . ...+          ....+......................++++.. +.....++. .|.++|+.+++... +... 
T Consensus       157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~-lt~~-  232 (281)
T d1k32a2         157 N-TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRK-HTSF-  232 (281)
T ss_dssp             S-CSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEE-CCCC-
T ss_pred             e-ccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceEE-eecC-
Confidence            1 1110          011111111122222333344455556666543 223333222 27788887665443 3321 


Q ss_pred             CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          222 ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       222 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      ....  ...|||||+.|+.. .++.|+++|+++++
T Consensus       233 ~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         233 TDYY--PRHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             CSSC--EEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             CCcc--cccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            1222  34689999988764 46789999998877

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=1.6e-06  Score=67.63  Aligned_cols=193  Identities=10%  Similarity=0.041  Sum_probs=112.0

Q ss_pred             eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE-eeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeee
Q 018248           53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL-GELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVD  128 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~  128 (359)
                      ...+++..+++..+ +..+  ..+.+..++....... ...........+++++++.+++   ..+.+++++-.+...+.
T Consensus        16 P~~vavd~dG~i~v-~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          16 PSGVAVDSAGNVYV-TSEG--MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             EEEEEECTTCCEEE-EECS--SSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCEEEEcCCCCEEE-EEcC--CCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            35667776666443 3322  3467777764443222 2222334567899999988776   34455555444443333


Q ss_pred             eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee-cccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT-AHASRIASIAMTLDGRFVATASSKGTLIRVFN  207 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd  207 (359)
                      .... ......+++.++++ + +++ ......+......+....... ........++++|+++++++...++. |..+|
T Consensus        93 ~~~~-~~~p~~iavd~~g~-i-~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~-i~~~d  167 (260)
T d1rwia_          93 PFDG-LNYPEGLAVDTQGA-V-YVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLE  167 (260)
T ss_dssp             CCCS-CCSEEEEEECTTCC-E-EEE-EGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE-EEEEC
T ss_pred             eeee-eeecccccccccce-e-Eee-ccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc-ccccc
Confidence            2222 23345567777654 2 333 223444555554444333322 22345678999999998888778887 99998


Q ss_pred             cCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248          208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  255 (359)
                      ....... .+... .......+++.++|+++++....+.|..++....
T Consensus       168 ~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         168 AESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             TTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            7654433 33211 3356789999999999888888888887765543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.89  E-value=5.8e-06  Score=65.62  Aligned_cols=213  Identities=8%  Similarity=0.050  Sum_probs=138.0

Q ss_pred             EEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248           10 HHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      -+..|++....|.-..  .+.|.-||.++++... ..+    ...+..+.+..++..+ +++     ...+.++|..+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~----~~~~~~i~~~~dg~l~-va~-----~~gl~~~d~~tg~   89 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL----PFMGSALAKISDSKQL-IAS-----DDGLFLRDTATGV   89 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC----SSCEEEEEEEETTEEE-EEE-----TTEEEEEETTTCC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EEC----CCCcEEEEEecCCCEE-EEE-----eCccEEeecccce
Confidence            3566887555554444  7889999988765432 333    4566777776655443 333     2569999998887


Q ss_pred             EEeeec-----cCcceeEEEEecceeEEE-------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           88 YLGELS-----FRSEVKNVRLRRDRIVVV-------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        88 ~~~~~~-----~~~~v~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ......     ....++++.+.|+|.+.+       ..+.-.+|.+..++....... ....+.++++++++.++++-  
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~d--  166 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVD--  166 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEE--
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEee--
Confidence            554332     123578899999998776       123556677666665444433 23345688999988765554  


Q ss_pred             CCCeeEEEEecCCe------eeE---EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248          156 LLKGQVRVEDYGTK------KSK---YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI  226 (359)
Q Consensus       156 ~~d~~v~~~~~~~~------~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i  226 (359)
                      +..+.|..++.+..      ...   ...+..+....+++..+|++.++.-..+. |..|| .+|+.+..+...  ...+
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~lP--~~~~  242 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEVP--GKQT  242 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEECS--CSBE
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecCC--CCce
Confidence            35667777554321      111   12233456788999999997777667777 99999 579998888753  3468


Q ss_pred             EEEEec-CCCCEEEE
Q 018248          227 YSLAFS-SNAQWLAA  240 (359)
Q Consensus       227 ~~~~~s-~~~~~l~~  240 (359)
                      ++++|- +|.+.|+.
T Consensus       243 T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         243 TCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEEEESTTSCEEEE
T ss_pred             EEEEEeCCCCCEEEE
Confidence            999996 67665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.6e-06  Score=70.74  Aligned_cols=98  Identities=6%  Similarity=-0.070  Sum_probs=68.6

Q ss_pred             ceEEEEEccCCCEEEEec----------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248            8 TIHHLALNQDHGCFATGT----------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK   77 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~----------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~   77 (359)
                      .+....|||||++++...          .+.+.+||+.++......... .....+....|+|+++.++++.     ++.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~-~~~~~l~~~~wSPDG~~iafv~-----~~n  135 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIF-----ENN  135 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEE-----TTE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc-CCccccceeeeccCCceEEEEe-----cce
Confidence            566788999999988764          356889999876654322221 2234556678999999999987     578


Q ss_pred             EEEEECCCccEEeeec--cCcc-----------------eeEEEEecceeEEE
Q 018248           78 VMIWDDHENRYLGELS--FRSE-----------------VKNVRLRRDRIVVV  111 (359)
Q Consensus        78 i~iwd~~~~~~~~~~~--~~~~-----------------v~~~~~~~~~~~~~  111 (359)
                      |.+.+..++..++...  ....                 -..+.|+|||+.++
T Consensus       136 l~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             EEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            9999887776555443  1111                 14677999999888

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=0.0003  Score=53.95  Aligned_cols=224  Identities=14%  Similarity=0.195  Sum_probs=139.7

Q ss_pred             EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc-cEE
Q 018248           11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN-RYL   89 (359)
Q Consensus        11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~   89 (359)
                      +.-.+|..+.||.-....+++||+++.+......+    ..+|..-.|. +++.+++++     +..|+-|+++.. ++.
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~----~e~VvfWkWi-s~~~L~lVT-----~taVYHW~~~g~s~P~  136 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWI-SLNTVALVT-----DNAVYHWSMEGESQPV  136 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC----SSCCCEEEES-SSSEEEEEC-----SSEEEEEESSSSCCCE
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc----CCCcEEEEec-CCCEEEEEc-----CCceEEEcccCCCCch
Confidence            45567888888887777899999998777766666    4666655554 567888887     588999998543 455


Q ss_pred             eeec-c----CcceeEEEEecceeEEE----------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC--Cc-cEE
Q 018248           90 GELS-F----RSEVKNVRLRRDRIVVV----------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA--GP-MVM  151 (359)
Q Consensus        90 ~~~~-~----~~~v~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~l  151 (359)
                      +.+. |    ..+|..-..+++.++++          -.|.+.+|..+. +.-+.+++|......+.+.-+.  .. +.+
T Consensus       137 k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  215 (327)
T d1utca2         137 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCF  215 (327)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred             hhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEE
Confidence            5454 2    35677778888888776          347888999754 3445566654432222221111  11 112


Q ss_pred             EecCCCCeeEEEEecCCe----e------eEEeec---ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          152 ACPGLLKGQVRVEDYGTK----K------SKYITA---HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       152 ~~~g~~d~~v~~~~~~~~----~------~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                      +.-+...+.+++-.....    +      ...+..   ..+-.-++..|+.-..+..-+.-|. |.+||+.++.++..-+
T Consensus       216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~-i~lyDleTgt~i~~nR  294 (327)
T d1utca2         216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR  294 (327)
T ss_dssp             EEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE-EEEEEcccccEEEEee
Confidence            222233456777333221    1      111111   1223457777877778888899998 9999999999987766


Q ss_pred             cCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          219 RGAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       219 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      -  ....|...+-+.+..=+++...+|.|.
T Consensus       295 I--s~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         295 I--SGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             C--CSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             c--CCCceEEeccCCCCceEEEECCCCeEE
Confidence            5  344666555555544555556777654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=0.00042  Score=53.15  Aligned_cols=219  Identities=13%  Similarity=0.162  Sum_probs=146.5

Q ss_pred             CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEec
Q 018248           26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRR  105 (359)
Q Consensus        26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  105 (359)
                      ...+.|.|+.......++...    ..  ..-+.|..+.+++-++     .++.++|+++.+.+..+....+|.--.|-.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----Ad--sAIMhP~~~IiALrag-----~~LQiFnletK~klks~~~~e~VvfWkWis  112 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----AD--SAIMNPASKVIALKAG-----KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  112 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CS--EEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEEECSSCCCEEEESS
T ss_pred             CceEEEEECCCCCcceecccc----hh--hhhcCCCCcEEEEecC-----CeEEEEehhHhhhhceEEcCCCcEEEEecC
Confidence            346889999876666655542    22  3346688888887763     789999999999999999888898888866


Q ss_pred             ceeEEE-ecCeEEEEEccc-ceeeeeEeccCC--CceeeeeecCCCccEEEecC------CCCeeEEEEecCCeeeEEee
Q 018248          106 DRIVVV-LNQKVYVYNFTD-LKLVDQIETVVN--PTGLCDVSQNAGPMVMACPG------LLKGQVRVEDYGTKKSKYIT  175 (359)
Q Consensus       106 ~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g------~~d~~v~~~~~~~~~~~~~~  175 (359)
                      +..+.. .+..|+-|+++. .++.+.+..+..  ....+.+..+.+..+++..|      .-.|.+.++..+.+.-+.+.
T Consensus       113 ~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         113 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence            655544 999999999943 345555554332  23445554444444444322      12477888999998899999


Q ss_pred             cccccccEEEEccCC---cEEEEEeC---CCCeEEEEEcCCCc--------EEEEe--ecCCCCcceEEEEecCCCCEEE
Q 018248          176 AHASRIASIAMTLDG---RFVATASS---KGTLIRVFNTMDGS--------LLQEM--RRGAERAEIYSLAFSSNAQWLA  239 (359)
Q Consensus       176 ~~~~~i~~~~~s~~~---~~l~~~~~---dg~~i~iwd~~~~~--------~~~~~--~~~~~~~~i~~~~~s~~~~~l~  239 (359)
                      +|.+....+.+.-+.   ++++.+..   .+. +.|.++....        ....+  ..........++..|+.-..+.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k-LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiy  271 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  271 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcE-EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEE
Confidence            997766666554222   23333322   245 8888875421        11122  1112234567888888888888


Q ss_pred             EEcCCCcEEEEEccCCC
Q 018248          240 ASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       240 ~~~~dg~i~iw~~~~~~  256 (359)
                      ..+.-|.|++||++++.
T Consensus       272 viTK~G~i~lyDleTgt  288 (327)
T d1utca2         272 LITKYGYIHLYDLETGT  288 (327)
T ss_dssp             EEETTSEEEEEETTTCC
T ss_pred             EEecCcEEEEEEccccc
Confidence            89999999999999987

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.05  E-value=0.0019  Score=52.28  Aligned_cols=186  Identities=13%  Similarity=0.093  Sum_probs=110.9

Q ss_pred             CEEEEEecCCCCCCeEEEEECCCccEEeeec-cC---------------------------------------cce--eE
Q 018248           63 NIICLVNSGPHQSNKVMIWDDHENRYLGELS-FR---------------------------------------SEV--KN  100 (359)
Q Consensus        63 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~---------------------------------------~~v--~~  100 (359)
                      .+..+.++|.  .|.|+++-+.+++.+..+. +.                                       +..  -.
T Consensus        12 eyy~f~SgG~--sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~   89 (459)
T d1fwxa2          12 DYYGFWSSGQ--SGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVH   89 (459)
T ss_dssp             SEEEEECCBT--TCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEE
T ss_pred             cEEEEeeCCc--cceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCc
Confidence            5667777774  5999999888877766652 10                                       001  12


Q ss_pred             EEEe---cceeEEE----ecCeEEEEEcccceeeeeEeccC-CCceeeeeecCCCccEEEecCCC---------------
Q 018248          101 VRLR---RDRIVVV----LNQKVYVYNFTDLKLVDQIETVV-NPTGLCDVSQNAGPMVMACPGLL---------------  157 (359)
Q Consensus       101 ~~~~---~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~---------------  157 (359)
                      +++.   +||+++.    .+.+|.+.|+.+.+..+.+..+. .....+...++++..++++.+..               
T Consensus        90 ~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          90 MSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             ccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence            3343   3788888    67899999999888766554422 22334455566666667653210               


Q ss_pred             --CeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCC--------------eEEEE--------------
Q 018248          158 --KGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGT--------------LIRVF--------------  206 (359)
Q Consensus       158 --d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--------------~i~iw--------------  206 (359)
                        .+.+.+.+.. .+....+. -.+....+.++|+|+++++.+.+..              .+.++              
T Consensus       170 ~y~~~~t~ID~~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             -EEEEEEEEETTTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hcceEEEEEecCCceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence              1223333333 33333332 2345678999999999888764310              03333              


Q ss_pred             ---------EcCCC---cEEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccC
Q 018248          207 ---------NTMDG---SLLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKV  254 (359)
Q Consensus       207 ---------d~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~  254 (359)
                               |.++.   ..+..+..   ......+..+|||+++++++ .+.++.|+|++.
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             EEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                     33221   12222222   13456789999999987765 678999999975

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=0.0014  Score=50.46  Aligned_cols=214  Identities=6%  Similarity=-0.035  Sum_probs=127.7

Q ss_pred             ceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248            8 TIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE   85 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~   85 (359)
                      .+..|+|.+..+.|....  ++.|+..+++..........   ....+..+++.+-.+.+.++..   ..+.|.+.++..
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~---~~~~p~~iAvD~~~~~lY~~d~---~~~~I~~~~~dg  110 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ---DLGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT---TCCCEEEEEEETTTTEEEEEET---TTTEEEEEETTS
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe---ccccccEEEEeccCCeEEEecc---CCCEEEEEecCC
Confidence            466789998888776655  67788888876544322221   1345677888777777777664   358999999776


Q ss_pred             ccEEeeec-cCcceeEEEEecceeEEE--e--cC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248           86 NRYLGELS-FRSEVKNVRLRRDRIVVV--L--NQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK  158 (359)
Q Consensus        86 ~~~~~~~~-~~~~v~~~~~~~~~~~~~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  158 (359)
                      ......+. ....+..+++.|...++.  .  .+  .|..-++............-.....+++.+..+.++.+-  ...
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d--~~~  188 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD--AGT  188 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE--TTT
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEe--CCC
Confidence            54433333 335688999998765555  2  12  354455533322222222222335677877777665553  245


Q ss_pred             eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248          159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS  233 (359)
Q Consensus       159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  233 (359)
                      +.|..-+.++...+.+........++++.  +..|.... ..+. |...|..+++.+..+... .......++..+
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~~~-~~~~~~gi~v~~  260 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITIAL  260 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEEEC
T ss_pred             CEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCE-EEEEECCCCccceEECCC-CCCCcceEEEeC
Confidence            67877777776555443222334577775  44454444 5566 888998888887766432 223444555443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=0.0016  Score=50.08  Aligned_cols=230  Identities=4%  Similarity=-0.068  Sum_probs=135.6

Q ss_pred             CCEEEEecCCceEEEEcCCCcce---eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-
Q 018248           18 HGCFATGTETGFRVYLSDPYKPI---MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-   93 (359)
Q Consensus        18 g~~l~~~~d~~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-   93 (359)
                      |.+|+.+..+.|+-.+++.....   ....+. .+...+..+++.+..+.+.++..   .++.|+..++..+.....+. 
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~---~~~~I~~~~l~g~~~~~v~~~   76 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQ   76 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECT
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEEC---CCCeEEEEEcccCCcEEEEEe
Confidence            45677777777887887643211   011111 12334555677777787877654   35889988877655444443 


Q ss_pred             cCcceeEEEEecceeEE--E--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe
Q 018248           94 FRSEVKNVRLRRDRIVV--V--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK  169 (359)
Q Consensus        94 ~~~~v~~~~~~~~~~~~--~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~  169 (359)
                      .-..+.++++..-+..+  +  ..+.|.+.++........+.........+++.|....++....+.....|..-..++.
T Consensus        77 ~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_          77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence            33567888887543333  3  5679999998544332223333344567888888776665543433344544455565


Q ss_pred             eeEEee-cccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcE
Q 018248          170 KSKYIT-AHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV  247 (359)
Q Consensus       170 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  247 (359)
                      ....+. ..-.....+++.+.++.|..+. ..+. |...++........+..   .....++++. ++.+..+-...+.|
T Consensus       157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~~~v~~~---~~~P~~lav~-~~~lYwtd~~~~~I  231 (263)
T d1npea_         157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSV  231 (263)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             CceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCeEEEECC---CCCcEEEEEE-CCEEEEEECCCCEE
Confidence            444433 2334567999998887776654 5566 88888755444333332   1234678775 34444554566778


Q ss_pred             EEEEccCCC
Q 018248          248 HVFGLKVDS  256 (359)
Q Consensus       248 ~iw~~~~~~  256 (359)
                      ...|..+++
T Consensus       232 ~~~~~~~g~  240 (263)
T d1npea_         232 IAMDLAISK  240 (263)
T ss_dssp             EEEETTTTE
T ss_pred             EEEECCCCc
Confidence            877777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.99  E-value=0.0026  Score=51.89  Aligned_cols=115  Identities=9%  Similarity=-0.031  Sum_probs=67.6

Q ss_pred             ceEEEEEccCCCEEEEec-CC-----------ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248            8 TIHHLALNQDHGCFATGT-ET-----------GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS   75 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~-d~-----------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d   75 (359)
                      ++.......+|+.++.|+ +.           .+.+||..++.-.........|........+..++..++..+.   ..
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~---~~   97 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN---DA   97 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS---ST
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecC---CC
Confidence            344555667888888876 31           2678999876543322222133333334455566655443332   34


Q ss_pred             CeEEEEECCCccEEeeec--cCcceeEEEEecceeEEEe---------cCeEEEEEcccce
Q 018248           76 NKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVVL---------NQKVYVYNFTDLK  125 (359)
Q Consensus        76 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---------d~~i~i~d~~~~~  125 (359)
                      ..+.+||..+......-.  ....-...+..+++++++.         -..+.+||..+.+
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            789999988876543322  2233346677788887771         2468999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.98  E-value=0.00083  Score=54.38  Aligned_cols=223  Identities=13%  Similarity=0.062  Sum_probs=131.9

Q ss_pred             EEEEcc---CCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------------
Q 018248           11 HLALNQ---DHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------------   73 (359)
Q Consensus        11 ~~~~s~---~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------------   73 (359)
                      .+++..   ||++|.+..  ++.|.+-|++..+......+.  -......+.....++...+...+..            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP--n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC--CCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence            455554   899998777  788999999988765444442  2334444555444443322222111            


Q ss_pred             ----CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--e---c-------------------------------
Q 018248           74 ----QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L---N-------------------------------  113 (359)
Q Consensus        74 ----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~---d-------------------------------  113 (359)
                          ..+.+.++|..+.+...++........+.++++|++++  .   +                               
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             chhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                11446788999998888888777788899999998887  1   1                               


Q ss_pred             -----CeEEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC------------eeeEE
Q 018248          114 -----QKVYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT------------KKSKY  173 (359)
Q Consensus       114 -----~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~------------~~~~~  173 (359)
                           +.+.+.|.+..   ..+..+..... ..-+.++||++.  ++++|..+.++.+.+.+.            ..+..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKy--i~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~  323 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKH--LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  323 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESS-CCCEEECTTSSE--EEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCC-CCceEECCCCCE--EEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe
Confidence                 12233343221   12223333333 245788999886  444588899999977642            11111


Q ss_pred             eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----------cEEEEeecCCCCcceEEE------EecCCCCE
Q 018248          174 ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----------SLLQEMRRGAERAEIYSL------AFSSNAQW  237 (359)
Q Consensus       174 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----------~~~~~~~~~~~~~~i~~~------~~s~~~~~  237 (359)
                      -....-....-+|...|.-..+---|.. |.-|++...          ..+..+..+-   .+-.+      ...|||++
T Consensus       324 e~elglgPLht~fd~~g~aytslfids~-v~kw~~~~~~~~~~~~~~~~v~~k~~v~y---~~gh~~~~~g~t~~~dgk~  399 (459)
T d1fwxa2         324 EPELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHY---QPGHLKTVMGETLDATNDW  399 (459)
T ss_dssp             CCBCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSS---CEEEEEETTTTSTTCCSSE
T ss_pred             ecccCcCccccccCCCceEEEEeeccce-EEEEecchhhhhhccccCCcceecccccc---CCCCCccCcCCcCCCCCCE
Confidence            1112223345678888865556667888 999998432          3444444321   11222      24689999


Q ss_pred             EEEEc
Q 018248          238 LAASS  242 (359)
Q Consensus       238 l~~~~  242 (359)
                      |++..
T Consensus       400 l~~~n  404 (459)
T d1fwxa2         400 LVCLS  404 (459)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            98875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.80  E-value=0.0081  Score=51.60  Aligned_cols=233  Identities=10%  Similarity=0.061  Sum_probs=130.0

Q ss_pred             CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeE-EEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEeeecc
Q 018248           19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQL-VSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGELSF   94 (359)
Q Consensus        19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~   94 (359)
                      ..++.+. ++.+.-.|..+++........ .+...... ..-....+.+++......  ..|.|.-+|.++|+.+-++..
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~-~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTT-DPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECS-CTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCcc-CcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            3455666 888888888888877655432 11111000 000001233333222111  347899999999999887741


Q ss_pred             C-------------------------------cce-eEEEEecceeEEE--e--------------------cCeEEEEE
Q 018248           95 R-------------------------------SEV-KNVRLRRDRIVVV--L--------------------NQKVYVYN  120 (359)
Q Consensus        95 ~-------------------------------~~v-~~~~~~~~~~~~~--~--------------------d~~i~i~d  120 (359)
                      .                               ..+ ..+++.+...++.  .                    ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            0                               011 1234455443332  0                    24677888


Q ss_pred             cccceeeeeEeccCCCce---------eeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecc-------------
Q 018248          121 FTDLKLVDQIETVVNPTG---------LCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAH-------------  177 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~-------------  177 (359)
                      +++++....++...+.+.         ...+..+++..-++..+..+|.+++.+.. ++.+.....-             
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            899998877765444332         12233344333333336678888885544 4433221100             


Q ss_pred             ---------------------cc--cccEEEEccCCcEEEEEeC------------------------------------
Q 018248          178 ---------------------AS--RIASIAMTLDGRFVATASS------------------------------------  198 (359)
Q Consensus       178 ---------------------~~--~i~~~~~s~~~~~l~~~~~------------------------------------  198 (359)
                                           .+  .-...+++|+..+++....                                    
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                                 00  0124566777766654432                                    


Q ss_pred             CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      .|. |.-||+.+++.+-+.....   +..+-.++-.+.++++++.||.++.+|.++++
T Consensus       437 ~G~-l~A~D~~tGk~~W~~~~~~---~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         437 SGA-LLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             EEE-EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccc-eEEEeCCCCeEeeeccCCC---CCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence            245 7788999999887776432   22222233356788889999999999999998

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.0051  Score=47.23  Aligned_cols=227  Identities=10%  Similarity=-0.056  Sum_probs=134.6

Q ss_pred             EEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----EEeeec-c
Q 018248           20 CFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----YLGELS-F   94 (359)
Q Consensus        20 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~-~   94 (359)
                      +|+.+....|+-.++++.+....  +.  ....+..+++.+..+.+.++..   ..+.|.-.++....    ....+. .
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~--~~--~~~~~~~id~d~~~~~lYw~D~---~~~~I~~~~l~~~~~~~~~~~~~~~~   75 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSL--IP--NLRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRD   75 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEE--EC--SCSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSS
T ss_pred             EEEEECCCeEEEEECCCCcceee--eC--CCCceEEEEEEeCCCEEEEEEC---CCCEEEEEEecCCCCCcceEEEEeCC
Confidence            56666666788889986544322  21  2345566777777788877654   34777766654321    111122 2


Q ss_pred             CcceeEEEEeccee--EEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee
Q 018248           95 RSEVKNVRLRRDRI--VVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK  170 (359)
Q Consensus        95 ~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~  170 (359)
                      ...+.++++.+.+.  +++  ..+.|.+.++........+.........+++.|....++.+- ....+.|.....++..
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~-~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD-WGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE-CSSSCEEEEEETTSCC
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEec-cCCCcceeEeccCCCc
Confidence            34567788875443  333  567899999865554444444444456788888766655554 2334566666667665


Q ss_pred             eEEee-cccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248          171 SKYIT-AHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH  248 (359)
Q Consensus       171 ~~~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  248 (359)
                      ...+. ..-.....+++.+.++.|..+. ..+. |...++...................++++. ++.+..+-..++.|.
T Consensus       155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~-I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~  232 (266)
T d1ijqa1         155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF  232 (266)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             eecccccccceeeEEEeeccccEEEEecCCcCE-EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEE
Confidence            55543 3335668999999877666664 4566 888888654433333322222356778876 344445545677777


Q ss_pred             EEEccCCC
Q 018248          249 VFGLKVDS  256 (359)
Q Consensus       249 iw~~~~~~  256 (359)
                      ..+..++.
T Consensus       233 ~~~~~~g~  240 (266)
T d1ijqa1         233 SANRLTGS  240 (266)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            77766654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.72  E-value=0.0044  Score=53.40  Aligned_cols=232  Identities=7%  Similarity=-0.067  Sum_probs=126.5

Q ss_pred             EEEEec-CCceEEEEcCCCcceeeeecccCCC-CceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEeeeccC
Q 018248           20 CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR-GGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGELSFR   95 (359)
Q Consensus        20 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~   95 (359)
                      .++.++ |+.+.-.|.++++......+...+. ..+...-... .+.+++...+..  .++.|+-+|..+|+.+..+...
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            455555 8888888999988776554420001 1111111111 234433332111  3688999999999998865411


Q ss_pred             --------------------------------------cce-eEEEEecceeEEE---e----------------cCeEE
Q 018248           96 --------------------------------------SEV-KNVRLRRDRIVVV---L----------------NQKVY  117 (359)
Q Consensus        96 --------------------------------------~~v-~~~~~~~~~~~~~---~----------------d~~i~  117 (359)
                                                            ..+ ...++.+...++.   .                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence                                                  011 1234455443333   1                35788


Q ss_pred             EEEcccceeeeeEeccCCCce---------eeeeecCCCccEEEecCCCCeeEEEEe-cCCeeeEEeecc----------
Q 018248          118 VYNFTDLKLVDQIETVVNPTG---------LCDVSQNAGPMVMACPGLLKGQVRVED-YGTKKSKYITAH----------  177 (359)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~d~~v~~~~-~~~~~~~~~~~~----------  177 (359)
                      -.|.++++.+..++...+.+.         ...+..+++...++.....+|.+++.+ .+++.+...+..          
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~  355 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD  355 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccc
Confidence            899999999888875443332         122233443322222355678888744 444433211100          


Q ss_pred             ---------------------------ccc--ccEEEEccCCcEEEEEeCC-----------------------------
Q 018248          178 ---------------------------ASR--IASIAMTLDGRFVATASSK-----------------------------  199 (359)
Q Consensus       178 ---------------------------~~~--i~~~~~s~~~~~l~~~~~d-----------------------------  199 (359)
                                                 .+.  -...+++|+...++....+                             
T Consensus       356 ~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (571)
T d2ad6a1         356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGP  435 (571)
T ss_dssp             TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             ccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecccc
Confidence                                       000  0135677776665543322                             


Q ss_pred             --------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          200 --------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       200 --------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                              |. |.-+|+.+|+.+-+....   .+..+-..+-.+.++++++.||.++.+|.++++
T Consensus       436 ~~~~~~~~G~-l~AiD~~TG~~~W~~~~~---~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         436 NGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             TSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCcccCCccc-EEEeccCCCceeeEcCCC---CCCCcceeEecCCEEEEECCCCeEEEEECCCCc
Confidence                    34 677788888877666532   111111122246678889999999999999998

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.68  E-value=0.013  Score=50.31  Aligned_cols=112  Identities=10%  Similarity=0.032  Sum_probs=65.0

Q ss_pred             CCCEEEEecCCceEEEEcCCCcceeeeeccc------CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248           17 DHGCFATGTETGFRVYLSDPYKPIMRRDFDR------NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG   90 (359)
Q Consensus        17 ~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~   90 (359)
                      +|..+++..++.|.-.|.++++.+.......      ........-.....++.+++..    .++.|.-.|..+|+.+.
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~g~l~Alda~tG~~~w  141 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT----LDGRLIALDAKTGKAIW  141 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC----TTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe----CCCEEEEEECCCCcEEe
Confidence            3434444448888888999888887643210      0000000001111244555555    57999999999999988


Q ss_pred             eeccCcc-----eeEEEEecceeEEE--------ecCeEEEEEcccceeeeeEec
Q 018248           91 ELSFRSE-----VKNVRLRRDRIVVV--------LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        91 ~~~~~~~-----v~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      .......     +...-.--++.+++        ..|.|.-+|.++++.+..+..
T Consensus       142 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             ccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            7752211     11111112444454        347899999999999988754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.62  E-value=0.016  Score=49.83  Aligned_cols=193  Identities=9%  Similarity=0.077  Sum_probs=104.4

Q ss_pred             CCCEEEEec-CCceEEEEc-CCCcceeeeecccCCCC-------ce-eEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248           17 DHGCFATGT-ETGFRVYLS-DPYKPIMRRDFDRNPRG-------GT-QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN   86 (359)
Q Consensus        17 ~g~~l~~~~-d~~i~iw~~-~~~~~~~~~~~~~~h~~-------~v-~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~   86 (359)
                      +|..+++.. ++.|...|. ++++.+.+.........       .+ ..++  ..+..+++.+    .|+.+.-.|.++|
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a--~~~~~i~~~~----~~g~l~alda~tG  135 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA--YGAGQIVKKQ----ANGHLLALDAKTG  135 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE--EETTEEEEEC----TTSEEEEEETTTC
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcce--eeCCeEEEEe----CCCcEEeeehhhh
Confidence            344444444 577777776 46777765432100000       00 1111  2245555555    6799999999999


Q ss_pred             cEEeeecc-C----cceeEEEEecceeEEE--------ecCeEEEEEcccceeeeeEeccCC------------------
Q 018248           87 RYLGELSF-R----SEVKNVRLRRDRIVVV--------LNQKVYVYNFTDLKLVDQIETVVN------------------  135 (359)
Q Consensus        87 ~~~~~~~~-~----~~v~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~------------------  135 (359)
                      +.+..... .    ..++.--.-.++.+++        ..|.|+-+|+.+|+.+..+.....                  
T Consensus       136 ~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~  215 (571)
T d2ad6a1         136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             hhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccC
Confidence            98776641 1    1222211222344444        367899999999999887653211                  


Q ss_pred             -------------------Cc-eeeeeecCCCccEEEecCC---------------CCeeEEEEecCCeeeEEeeccccc
Q 018248          136 -------------------PT-GLCDVSQNAGPMVMACPGL---------------LKGQVRVEDYGTKKSKYITAHASR  180 (359)
Q Consensus       136 -------------------~~-~~~~~~~~~~~~~l~~~g~---------------~d~~v~~~~~~~~~~~~~~~~~~~  180 (359)
                                         .+ ...++.+.....++.+ +.               .+..+.++..+++..-.++.....
T Consensus       216 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~t-g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D  294 (571)
T d2ad6a1         216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD  294 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCCcccccCCCccccccccchhcCeeeeec-ccccCccccccccccccccceeeeeccchhheecccccCcc
Confidence                               00 1123444443333322 21               133445566666666555432222


Q ss_pred             c---------cEEEEccCCc---EEEEEeCCCCeEEEEEcCCCcEEEEe
Q 018248          181 I---------ASIAMTLDGR---FVATASSKGTLIRVFNTMDGSLLQEM  217 (359)
Q Consensus       181 i---------~~~~~s~~~~---~l~~~~~dg~~i~iwd~~~~~~~~~~  217 (359)
                      +         ....+..+++   .++.++.+|. +.++|..+|+.+...
T Consensus       295 ~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~-l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAE  342 (571)
T ss_dssp             SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             ccccccccccceeeeeccCccccceeeccccce-EEEEecCCCcEeeee
Confidence            1         1222223444   5677888998 999999999987543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.60  E-value=0.017  Score=49.68  Aligned_cols=51  Identities=2%  Similarity=0.060  Sum_probs=36.7

Q ss_pred             EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |.-||+.+++.+-+.+..   .+...=..+-.|.++++++.||.++.+|.++++
T Consensus       459 l~AiD~~tGk~~W~~~~~---~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEeCCCCCceEeeecCC---CCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence            667888888887776642   122221223367788889999999999999998

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.54  E-value=0.021  Score=49.12  Aligned_cols=109  Identities=6%  Similarity=-0.016  Sum_probs=63.4

Q ss_pred             EEEEec-CCceEEEEcCCCcceeeeeccc----CCCC--ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeee
Q 018248           20 CFATGT-ETGFRVYLSDPYKPIMRRDFDR----NPRG--GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGEL   92 (359)
Q Consensus        20 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~----~h~~--~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~   92 (359)
                      .|.+++ ++.|.-+|.++++.+.......    ++..  ....-........+++.+    .|+.+.-.|..+|+.+...
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t----~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA----WDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC----TTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe----cccceeeeccccccceecc
Confidence            344455 8889999999988887654320    0000  000001111234555555    5789999999999988765


Q ss_pred             c-cCc---ce--eEEEEecceeEEE--------ecCeEEEEEcccceeeeeEec
Q 018248           93 S-FRS---EV--KNVRLRRDRIVVV--------LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        93 ~-~~~---~v--~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      . ...   .+  ...-.-.++.+++        ..|.|+-+|.++|+.+..+..
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence            4 111   11  1111112445554        357899999999999888754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.31  E-value=0.035  Score=47.90  Aligned_cols=53  Identities=11%  Similarity=0.206  Sum_probs=36.9

Q ss_pred             CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          200 GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       200 g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |. |.-||+.+++.+-+....   .++.+-.++..|.+++.|+.||.++.+|.++++
T Consensus       453 G~-l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         453 GQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ce-EEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            45 777888888877655422   222222233357788889999999999999998

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.29  E-value=0.03  Score=45.23  Aligned_cols=78  Identities=12%  Similarity=0.104  Sum_probs=46.4

Q ss_pred             eEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC--CCCeEEEEECC
Q 018248            9 IHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDH   84 (359)
Q Consensus         9 v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~   84 (359)
                      ....++.++|++++.|+  ...+.+||..+..-.....+.  ....-...+...++..+++.+....  .-..+.+||+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~--~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCccccccccc--ccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            44667889999999997  467999998865443222221  1111223444556655554432111  23568999988


Q ss_pred             CccE
Q 018248           85 ENRY   88 (359)
Q Consensus        85 ~~~~   88 (359)
                      +++.
T Consensus       156 ~~~W  159 (387)
T d1k3ia3         156 SKTW  159 (387)
T ss_dssp             TTEE
T ss_pred             CCce
Confidence            7754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.27  E-value=0.046  Score=47.09  Aligned_cols=195  Identities=9%  Similarity=0.037  Sum_probs=104.0

Q ss_pred             CCEEEEec-CCceEEEEc-CCCcceeeeeccc--------CCCCceeEEEEeccC----CEEEEEecCCCCCCeEEEEEC
Q 018248           18 HGCFATGT-ETGFRVYLS-DPYKPIMRRDFDR--------NPRGGTQLVSMLFRS----NIICLVNSGPHQSNKVMIWDD   83 (359)
Q Consensus        18 g~~l~~~~-d~~i~iw~~-~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~----~~~~~~~~~~~~d~~i~iwd~   83 (359)
                      |.++++++ ++.+...|. ++++.+.......        .....-+.+++...+    ..+++.+    .|+.|.-.|.
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t----~dg~l~Alda  138 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ----LDGNVAALNA  138 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC----TTSEEEEEET
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEe----CCCCeEeecc
Confidence            44444444 566666675 4677666543210        000000122332221    2345454    6899999999


Q ss_pred             CCccEEeeeccC-----cceeEEEEecceeEEE--------ecCeEEEEEcccceeeeeEeccCC---------------
Q 018248           84 HENRYLGELSFR-----SEVKNVRLRRDRIVVV--------LNQKVYVYNFTDLKLVDQIETVVN---------------  135 (359)
Q Consensus        84 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~---------------  135 (359)
                      ++|+.+..+...     ..++.--.--++.+++        ..|.|+-+|.++|+.+.++.....               
T Consensus       139 ~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  218 (596)
T d1w6sa_         139 ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (596)
T ss_dssp             TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence            999998887521     1122111112445555        248999999999999988753210               


Q ss_pred             ----------------------C-ceeeeeecCCCccEEEecCC---------------CCeeEEEEecCCeeeEEeec-
Q 018248          136 ----------------------P-TGLCDVSQNAGPMVMACPGL---------------LKGQVRVEDYGTKKSKYITA-  176 (359)
Q Consensus       136 ----------------------~-~~~~~~~~~~~~~~l~~~g~---------------~d~~v~~~~~~~~~~~~~~~-  176 (359)
                                            . -...++.+..+..++.+ +.               .+..+.++..+++..-.++. 
T Consensus       219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~t-g~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~  297 (596)
T d1w6sa_         219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (596)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             cccccccccccCCCCceecCCCccccccccccCCCeeeccc-ccccccccccccccccccccccccccccccccccccce
Confidence                                  0 01223334333333333 21               23455556666666554442 


Q ss_pred             -ccc-------cccEEEE-ccCCc---EEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248          177 -HAS-------RIASIAM-TLDGR---FVATASSKGTLIRVFNTMDGSLLQEMR  218 (359)
Q Consensus       177 -~~~-------~i~~~~~-s~~~~---~l~~~~~dg~~i~iwd~~~~~~~~~~~  218 (359)
                       |..       ...-+.. ..+|+   .++.+..+|. +.++|..+|+.+...+
T Consensus       298 ~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~-~~vlDr~tG~~i~~~~  350 (596)
T d1w6sa_         298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (596)
T ss_dssp             TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             eccccCCccccceeeeeccccccccccceeccccccc-eeeecCCCCceeeecc
Confidence             211       1111111 23443   6778888998 9999999999886543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.025  Score=43.16  Aligned_cols=205  Identities=9%  Similarity=-0.043  Sum_probs=116.5

Q ss_pred             CCceEEEEEccCCCEEEEec--CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248            6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW   81 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw   81 (359)
                      ...+.+++|++..+.|.-..  .+.|.--+++....  .....+. .....+..+++.+....+.++..   ..+.|.+.
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~p~glAvD~~~~~lY~~d~---~~~~I~v~  104 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDS---VLGTVSVA  104 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEET---TTTEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-CCCCCcceEEEeeccceEEEEec---CCCEEEeE
Confidence            45567899998888776665  55566666543211  1111111 11244566788777777777654   34899999


Q ss_pred             ECCCccEEeeec-cCcceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248           82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG  155 (359)
Q Consensus        82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  155 (359)
                      ++........+. .......++++|...++.     ..+.|...++............-.....+++.+..+.++.+-  
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d--  182 (266)
T d1ijqa1         105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD--  182 (266)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE--
T ss_pred             ecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEec--
Confidence            987665544444 446688999998654443     334677777743333222222223345678888777766553  


Q ss_pred             CCCeeEEEEecCCeeeEEee-cc--cccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEEEEeec
Q 018248          156 LLKGQVRVEDYGTKKSKYIT-AH--ASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLLQEMRR  219 (359)
Q Consensus       156 ~~d~~v~~~~~~~~~~~~~~-~~--~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~~~~~~  219 (359)
                      ...+.|...+.++.....+. ..  .....++++.  +..|... ..++. |...+..+++....+..
T Consensus       183 ~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~-I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred             CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCe-EEEEECCCCcceEEEEc
Confidence            34667777666664433332 22  1234456665  3344444 35555 77777777665554443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.74  E-value=0.11  Score=42.65  Aligned_cols=241  Identities=11%  Similarity=0.087  Sum_probs=126.2

Q ss_pred             ceEEEEEccCCCEEEEec--CC----ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC--------
Q 018248            8 TIHHLALNQDHGCFATGT--ET----GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH--------   73 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~--d~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--------   73 (359)
                      .+...++|||++++|.+-  +|    .++++|+++++... ..+.   ......+.|..++..++...-...        
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-cccc---cccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            345678899999998765  33    38999999876543 2232   122256788888888876642110        


Q ss_pred             ----CCCeEEEEECCCccE--Eeeec---cCcceeEEEEecceeEEE------ecC--eEEEEEccccee--------ee
Q 018248           74 ----QSNKVMIWDDHENRY--LGELS---FRSEVKNVRLRRDRIVVV------LNQ--KVYVYNFTDLKL--------VD  128 (359)
Q Consensus        74 ----~d~~i~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~------~d~--~i~i~d~~~~~~--------~~  128 (359)
                          ....|..+.+.+...  ...+.   ....+..+..++++++++      .+.  .+.+.|+.....        ..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                234788888776532  22333   223456677888988776      223  344555533211        11


Q ss_pred             eEeccCCCceeeeeecCCCccEEEec-CCCCeeEEEEecCC---eeeEEe-ecccccccEEEEccCCcEEEEEe-CCCC-
Q 018248          129 QIETVVNPTGLCDVSQNAGPMVMACP-GLLKGQVRVEDYGT---KKSKYI-TAHASRIASIAMTLDGRFVATAS-SKGT-  201 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~d~~v~~~~~~~---~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~-~dg~-  201 (359)
                      .+........  .+...++..++.+. +..++.+..-+...   .....+ ..+...+..-.+...+.+|+... .++. 
T Consensus       282 ~~~~~~~~~~--~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         282 LIDNFEGEYD--YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             EECSSSSCEE--EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             eecccccceE--EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence            1111111111  12223333333331 11233443322221   112233 33444454444444555665554 4432 


Q ss_pred             eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE--c--CCCcEEEEEccCCC
Q 018248          202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS--S--DKGTVHVFGLKVDS  256 (359)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~--~dg~i~iw~~~~~~  256 (359)
                      .|++++..+++....+..  ..+.+..+...++...+...  +  .=.++.-+|+.+++
T Consensus       360 ~l~v~~~~~~~~~~~~~~--~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         360 TLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCCCcEEEecCC--CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            178999988877655443  34566666666665543322  2  22578889988876

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.56  E-value=0.19  Score=43.03  Aligned_cols=53  Identities=13%  Similarity=0.357  Sum_probs=39.2

Q ss_pred             CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248          200 GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS  256 (359)
Q Consensus       200 g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  256 (359)
                      |. |.-+|+.+|+.+-+...+   .++.+-..+..+.++++++.||.++.+|.++++
T Consensus       466 G~-l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         466 GS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             Ce-EEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            45 777888888888777643   233322233467788889999999999999998

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.04  E-value=0.24  Score=38.99  Aligned_cols=74  Identities=12%  Similarity=0.172  Sum_probs=43.9

Q ss_pred             CCeeeEEeecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-CCCEEEEE
Q 018248          167 GTKKSKYITAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQWLAAS  241 (359)
Q Consensus       167 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~  241 (359)
                      +.+..+.....-...+.|+++||+++|+.+.. .+. |+.|++.....+.......-.+.+-.+.+.+ +|.+.+++
T Consensus       194 ~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         194 SPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             cCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            33334444334456789999999998777654 455 9999986543222211111235677888876 45554443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.64  Score=39.61  Aligned_cols=109  Identities=4%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             EEEEec-CCceEEEEcCCCcceeeeeccc--CCCCc--eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeecc
Q 018248           20 CFATGT-ETGFRVYLSDPYKPIMRRDFDR--NPRGG--TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSF   94 (359)
Q Consensus        20 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~--~h~~~--v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~   94 (359)
                      .|.+++ ++.|.-.|.++++.+.......  .....  ...-.....++.+++.+    .++.+.-.|.++|+.+.....
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t----~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT----LDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE----TTTEEEEEESSSCCEEEEEEC
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEec----CCCeEEEecccccceeeeecc
Confidence            344444 8888888999888887654320  00000  00001112245566665    578899999999988765431


Q ss_pred             C--cc---ee--EEEEec---ceeEEE---------ecCeEEEEEcccceeeeeEec
Q 018248           95 R--SE---VK--NVRLRR---DRIVVV---------LNQKVYVYNFTDLKLVDQIET  132 (359)
Q Consensus        95 ~--~~---v~--~~~~~~---~~~~~~---------~d~~i~i~d~~~~~~~~~~~~  132 (359)
                      .  ..   ..  -....+   .+..++         ..+.|.-+|.++|+.+.++..
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~  202 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF  202 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEec
Confidence            1  10   00  011111   111222         246788888888888776643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.73  E-value=0.71  Score=36.26  Aligned_cols=163  Identities=14%  Similarity=0.205  Sum_probs=93.3

Q ss_pred             eeeeecC-CCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc------CCcEEEEEeC--C--CCeEEEEE
Q 018248          139 LCDVSQN-AGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL------DGRFVATASS--K--GTLIRVFN  207 (359)
Q Consensus       139 ~~~~~~~-~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~--d--g~~i~iwd  207 (359)
                      .+-++|. +...+++.+. ..+-+++++++++.++.+.  .+.++.+..-.      ...-+++++.  +  .. |.+|.
T Consensus        30 AIW~n~~~p~~SlI~gTd-K~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~-l~~~~  105 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTN-KKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT-IEIYA  105 (353)
T ss_dssp             EEECCSSCGGGCEEEEEE-TTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCE-EEEEE
T ss_pred             eEEcCCCCcCccEEEEEc-CcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCccee-EEEEE
Confidence            3444553 2333344333 3445999999999888765  34555555432      2223555552  2  24 77887


Q ss_pred             cC-CCcEEEEeecCCC-----CcceEEEEe--cCC-CC-EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCC
Q 018248          208 TM-DGSLLQEMRRGAE-----RAEIYSLAF--SSN-AQ-WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNS  277 (359)
Q Consensus       208 ~~-~~~~~~~~~~~~~-----~~~i~~~~~--s~~-~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (359)
                      +. ....+..+.....     ...+..+++  ++. |. ++++...+|.+..|.+.......                  
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~------------------  167 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY------------------  167 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS------------------
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc------------------
Confidence            64 3334444432111     124666776  654 54 56667788999999886543210                  


Q ss_pred             CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248          278 SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG  341 (359)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~  341 (359)
                         -...     +.+         .+..+ ..+-.|++.++.+.|+++-++..++.+..++...
T Consensus       168 ---v~~~-----lvr---------~f~~~-~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~  213 (353)
T d1h6la_         168 ---ISGK-----KVR---------AFKMN-SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGG  213 (353)
T ss_dssp             ---EEEE-----EEE---------EEECS-SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSC
T ss_pred             ---eeeE-----eee---------ccCCC-CccceEEEeCCCCcEEEecCccceEEEEeccCCC
Confidence               0001     111         12222 3677899999999999998988777777776543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.89  Score=36.11  Aligned_cols=109  Identities=9%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             CCceEEEEEccCCCEEEEecCCceEEEEcCC-----------CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCC
Q 018248            6 PITIHHLALNQDHGCFATGTETGFRVYLSDP-----------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQ   74 (359)
Q Consensus         6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~   74 (359)
                      .....-++.++...++++|+...+.|..++.           ........+     ..+..+++  +.+.+++..     
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i-----p~v~~vaf--s~d~l~v~~-----  103 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI-----PDVIFVCF--HGDQVLVST-----  103 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC-----TTEEEEEE--ETTEEEEEE-----
T ss_pred             ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC-----CCeEEEEe--eCCEEEEEe-----
Confidence            4567788999988888888855677877531           111111221     23444444  566665554     


Q ss_pred             CCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEccccee
Q 018248           75 SNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKL  126 (359)
Q Consensus        75 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~  126 (359)
                      ++.+..++...-....... ...++..+.++|....++ .++.+.++++..++.
T Consensus       104 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~  157 (381)
T d1xipa_         104 RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST  157 (381)
T ss_dssp             SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCcc
Confidence            4678888866644333333 566788999999887777 899999999977654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.07  E-value=1.2  Score=36.14  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=59.8

Q ss_pred             eeEEEEeccCCEEEEEe--cCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ec--------------
Q 018248           53 TQLVSMLFRSNIICLVN--SGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LN--------------  113 (359)
Q Consensus        53 v~~~~~~~~~~~~~~~~--~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d--------------  113 (359)
                      +...+++|+++.+++.-  +|. ....+++.|+.+++.+...-.......+.|.+++..+.   .+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~-e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGS-DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTC-SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccC-chheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            44567788888877543  333 45789999999998765322222235788999987665   11              


Q ss_pred             --CeEEEEEccccee--eeeEeccCCC--ceeeeeecCCCccEEEe
Q 018248          114 --QKVYVYNFTDLKL--VDQIETVVNP--TGLCDVSQNAGPMVMAC  153 (359)
Q Consensus       114 --~~i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~l~~  153 (359)
                        ..|..+.+.+...  ...+......  ...+..+.+++.+++.+
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence              2688888755432  2233332332  22345677777655544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.29  E-value=1.6  Score=35.66  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=38.9

Q ss_pred             ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee--c----CCCCcceEEEEecCC
Q 018248          179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR--R----GAERAEIYSLAFSSN  234 (359)
Q Consensus       179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~--~----~~~~~~i~~~~~s~~  234 (359)
                      ...++|+|.|||+++++--..|. |++++..+++......  .    .........|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~-i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGK-ILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCE-EEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45679999999998877655788 9999877775433221  1    112357789999986

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.51  E-value=2.6  Score=33.35  Aligned_cols=93  Identities=9%  Similarity=0.031  Sum_probs=57.0

Q ss_pred             ceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248            8 TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR   87 (359)
Q Consensus         8 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~   87 (359)
                      .|..++|+.|  .|++..++.+..++...........     .-......+.+.++..+++.    .++.+.++++..++
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~-----~~~~~~~~~~~~p~~~~l~~----~~~~~~~~~l~~~~  156 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVT-----SFEKPVFQLKNVNNTLVILN----SVNDLSALDLRTKS  156 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEE-----ECSSCEEEEEECSSEEEEEE----TTSEEEEEETTTCC
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccc-----cccccccceecCCceeEEEe----cCCCEEEEEeccCc
Confidence            5889999755  5777667788888877544332222     12223445556677777777    67999999988875


Q ss_pred             EEeee------ccCcceeEEEEecceeEEE
Q 018248           88 YLGEL------SFRSEVKNVRLRRDRIVVV  111 (359)
Q Consensus        88 ~~~~~------~~~~~v~~~~~~~~~~~~~  111 (359)
                      .....      .-.+.+.++.|++.+..++
T Consensus       157 ~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         157 TKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             EEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             cccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            43321      1224455555555554444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.68  E-value=4.4  Score=31.61  Aligned_cols=184  Identities=14%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             EEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEe------cceeEEE--ec-----CeEEEEEcc-cceeeee
Q 018248           64 IICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLR------RDRIVVV--LN-----QKVYVYNFT-DLKLVDQ  129 (359)
Q Consensus        64 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~--~d-----~~i~i~d~~-~~~~~~~  129 (359)
                      .+++.+.   .++-|.+||+ +|+.++.+. .+.+..+..-      .....++  .+     .+|.+|.+. ....+..
T Consensus        41 SlI~gTd---K~~Gl~vYdL-~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          41 SKLITTN---KKSGLAVYSL-EGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             CEEEEEE---TTSCCEEEET-TCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cEEEEEc---CcCCEEEEcC-CCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            4444443   3456999997 588887765 2344444432      2222222  21     368888874 2222333


Q ss_pred             Eecc-------CCCceeeee--ecCCCccEEEecCCCCeeEEEEecC----C----eeeEEeecccccccEEEEccCCcE
Q 018248          130 IETV-------VNPTGLCDV--SQNAGPMVMACPGLLKGQVRVEDYG----T----KKSKYITAHASRIASIAMTLDGRF  192 (359)
Q Consensus       130 ~~~~-------~~~~~~~~~--~~~~~~~~l~~~g~~d~~v~~~~~~----~----~~~~~~~~~~~~i~~~~~s~~~~~  192 (359)
                      +...       ...+..+|+  ++.....+++. ...+|.+..|...    +    ..++.+. -...+..|.+.+....
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv-~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMV-TGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEE-ECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEE-EcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            3221       123445555  45444444444 4467887765431    1    2333343 3457889999999889


Q ss_pred             EEEEeCCCCeEEEEEcCC-----CcEEEEeecCCCCcceEEEEecC--CC--CEEEEEcCCCcEEEEEccCC
Q 018248          193 VATASSKGTLIRVFNTMD-----GSLLQEMRRGAERAEIYSLAFSS--NA--QWLAASSDKGTVHVFGLKVD  255 (359)
Q Consensus       193 l~~~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~--~~--~~l~~~~~dg~i~iw~~~~~  255 (359)
                      |..+-++.. |+.++...     +..+....+....+.+..+++-.  ++  -+|++.-.+++..|||....
T Consensus       194 LyisEE~~G-iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         194 LYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEETTTE-EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccc-eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            999988876 76666541     22333333222345777777542  33  34555556788999999875

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.52  E-value=5.3  Score=28.49  Aligned_cols=183  Identities=9%  Similarity=0.058  Sum_probs=90.9

Q ss_pred             CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCc--------ceeEEEEe-cc--eeEEE--ecC
Q 018248           50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRS--------EVKNVRLR-RD--RIVVV--LNQ  114 (359)
Q Consensus        50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~--------~v~~~~~~-~~--~~~~~--~d~  114 (359)
                      ..++..++...+++.+++.+.+.   ....+|-++.|+...-..  .-+        -|..+.+- ++  ..+++  ..|
T Consensus       101 pk~vRI~S~~yddk~vvF~Gase---d~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG  177 (313)
T d2hu7a1         101 VKPMRILSGVDTGEAVVFTGATE---DRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG  177 (313)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECS---SCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred             CceEEEEEeeecCceEEEecccC---CceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccC
Confidence            34588889999998888888754   566777766665443322  112        23333332 22  12222  356


Q ss_pred             eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc--------cccccEEEE
Q 018248          115 KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH--------ASRIASIAM  186 (359)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~--------~~~i~~~~~  186 (359)
                      .+++++...|..-.........+ ...+---+          +.--|. .+...+....+.-.        .-.|.-+-+
T Consensus       178 ~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~g----------Esywit-~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         178 GLRVFDSGEGSFSSASISPGMKV-TAGLETAR----------EARLVT-VDPRDGSVEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEEECCSSEEEEEEEECTTSCE-EEEEEESS----------CEEEEE-ECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             CEEEecCCCCcccceeEccCcee-eeccCCCC----------ceEEEE-EecccCceeeeecCcccceeecceEEEeeee
Confidence            66666655443322222222222 11111111          111222 23333333332211        123445568


Q ss_pred             ccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE-cCCCcEEEEEccCCC
Q 018248          187 TLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS-SDKGTVHVFGLKVDS  256 (359)
Q Consensus       187 s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~  256 (359)
                      .|++++++.+-.||. =++|.  +|+.+...++     .+..+..- ++....+. +-..--+|-.+.+++
T Consensus       246 ~Pdd~L~iiakrdG~-s~lF~--nGk~in~p~G-----~~~gat~i-~~~iyfshsSL~tP~kI~~~~~~~  307 (313)
T d2hu7a1         246 LPDGRLAVVARREGR-SAVFI--DGERVEAPQG-----NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  307 (313)
T ss_dssp             CTTSCEEEEEEETTE-EEEEE--TTEEECCCSS-----EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             CCCCcEEEEEecCCc-hheee--cceEecCCCC-----cccceEEE-CCEEEEeecccCCCceeEEcCCCC
Confidence            999999999999999 89997  6776654432     33333222 23333332 333335566666555

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=83.47  E-value=8.2  Score=29.82  Aligned_cols=183  Identities=11%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             EEEEEccCCCEEEEec-------------CCceEEEEcCCCccee-eeecccCC----CCceeEEEEe--ccCCEEEE-E
Q 018248           10 HHLALNQDHGCFATGT-------------ETGFRVYLSDPYKPIM-RRDFDRNP----RGGTQLVSML--FRSNIICL-V   68 (359)
Q Consensus        10 ~~~~~s~~g~~l~~~~-------------d~~i~iw~~~~~~~~~-~~~~~~~h----~~~v~~~~~~--~~~~~~~~-~   68 (359)
                      -.|+..|||..+++++             .|.|.++|+++.+... ...+..+.    .-....+++.  .++...++ +
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            4578889998886653             2778889987543321 11111000    0011222322  23443333 3


Q ss_pred             ecCCCCCCeEEEEECCCcc--E--Eeeecc--CcceeEEEEecceeEEE-ec-----------------CeEEEEEcccc
Q 018248           69 NSGPHQSNKVMIWDDHENR--Y--LGELSF--RSEVKNVRLRRDRIVVV-LN-----------------QKVYVYNFTDL  124 (359)
Q Consensus        69 ~~~~~~d~~i~iwd~~~~~--~--~~~~~~--~~~v~~~~~~~~~~~~~-~d-----------------~~i~i~d~~~~  124 (359)
                      .-.. ...+|.++++....  .  +..+.+  ....+++.+..++.+++ .|                 ....+|....+
T Consensus       118 nH~~-~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         118 NHPG-SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             ECST-TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             eccC-CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            2211 35778888865432  2  222332  24567888888887777 21                 23344443333


Q ss_pred             eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEE--eecccccccEEEEcc-CCcEEEEE
Q 018248          125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKY--ITAHASRIASIAMTL-DGRFVATA  196 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~--~~~~~~~i~~~~~s~-~~~~l~~~  196 (359)
                      +. ......-...+-++++|+++.++++.+  ..+.|+++..+.. ....  ...-....-.+.+.+ +|.+.+.+
T Consensus       197 ~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t--~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DV-RVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CE-EEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ce-EEEcCCCCccceeEECCCCCEEEEEeC--CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            32 222222234567899999988777654  4667887555432 2221  112234456677765 45544443