Citrus Sinensis ID: 018250
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKC8 | 362 | Probable S-adenosylmethio | no | no | 0.966 | 0.958 | 0.418 | 1e-76 | |
| Q9FKD0 | 362 | Probable S-adenosylmethio | no | no | 0.966 | 0.958 | 0.418 | 3e-76 | |
| Q9FKR0 | 361 | Probable S-adenosylmethio | no | no | 0.963 | 0.958 | 0.410 | 2e-73 | |
| Q9LS10 | 359 | Probable S-adenosylmethio | no | no | 0.938 | 0.938 | 0.407 | 1e-71 | |
| Q68CM3 | 365 | Probable caffeine synthas | N/A | no | 0.935 | 0.920 | 0.351 | 7e-52 | |
| Q9FZN8 | 369 | Caffeine synthase 1 OS=Ca | N/A | no | 0.916 | 0.891 | 0.332 | 1e-48 | |
| Q0J998 | 404 | Indole-3-acetate O-methyl | yes | no | 0.941 | 0.836 | 0.298 | 3e-41 | |
| Q9SPV4 | 359 | Salicylate O-methyltransf | N/A | no | 0.924 | 0.924 | 0.334 | 5e-41 | |
| Q9AVK0 | 372 | 7-methylxanthosine syntha | N/A | no | 0.924 | 0.892 | 0.283 | 5e-40 | |
| Q9AVK1 | 385 | Probable caffeine synthas | N/A | no | 0.922 | 0.859 | 0.294 | 1e-39 |
| >sp|Q9FKC8|MT799_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/356 (41%), Positives = 215/356 (60%), Gaps = 9/356 (2%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTV-RIADLGC 66
+FPM GGDG SY HNS +Q+ +D AKE EAI+ LD+ ++ + RIAD GC
Sbjct: 7 SFPMNGGDGPHSYIHNSSYQKVAIDGAKEKTSEAILKNLDLELLNRNSDENILRIADFGC 66
Query: 67 SVGPNTFISVQNIIEALE---FKFQNLSLPVP-DFQVFFNDHTENDFNTLFRTLP---PR 119
S+GPNTF VQNII+ ++ K N + P +FQV FND NDFNTLFRT P +
Sbjct: 67 SIGPNTFEVVQNIIDTVKQKNLKENNAYIGAPLEFQVCFNDQPNNDFNTLFRTQPISSKQ 126
Query: 120 KYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMK 179
Y + GVPGSFHGR+ PK++LH+ + A+HWLS P+ +KS N+ I+C ++
Sbjct: 127 AYLSVGVPGSFHGRVLPKNSLHIGHITYALHWLSTVPQHVCDKKSPALNKSYIQCNNLVE 186
Query: 180 GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCL 239
V E ++ QF+ D L ARAEELV GGLM+ S P G+P A T QG + +G CL
Sbjct: 187 EVTEAYRVQFKKDMGDFLGARAEELVSGGLMILSGQCLPDGVPKALTWQGVVIDMIGDCL 246
Query: 240 WDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQF 299
D+AK G+ ++EK F++P Y P++ E ++ I+RN +F++E M+++ PM +K F
Sbjct: 247 MDMAKQGITTKEKIELFSLPIYIPHISEFKAEIERNENFSIETMEKISHPMDYKPLTNDF 306
Query: 300 YLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
S RA+L +I +HFG+ ++ +F+ K+ I + K + F+VLKR
Sbjct: 307 ITSMFRAILNTIIEEHFGDGVVNELFDRF-AKKLNKYPIDFKRCKKYVNYFIVLKR 361
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9FKD0|MT797_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/356 (41%), Positives = 215/356 (60%), Gaps = 9/356 (2%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTV-RIADLGC 66
+FPM GGDG SY HNS +Q+ +D KE EAI+ KLD+ ++ + RI D GC
Sbjct: 7 SFPMNGGDGPHSYIHNSSYQKVAIDGVKERTSEAILEKLDLEFLNRNSEENILRIVDFGC 66
Query: 67 SVGPNTFISVQNIIEALE---FKFQNLSLPVP-DFQVFFNDHTENDFNTLFRTLP---PR 119
S+GPNTF VQNII+ ++ K + P +FQV FND NDFNTLFRT P +
Sbjct: 67 SIGPNTFDVVQNIIDTVKQKRLKENKTYIGAPLEFQVCFNDQPNNDFNTLFRTQPFFSRK 126
Query: 120 KYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMK 179
+Y++ GVPGSFHGR+ PK++LH+ ++ +HWLS P+ +KS N+ I+C +
Sbjct: 127 EYFSVGVPGSFHGRVLPKNSLHIGHTSYTLHWLSNVPQHVCDKKSPALNKSYIQCNNLVD 186
Query: 180 GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCL 239
V + ++ QFR DF L ARAEELV GGLM+ S P GIP A T QG + +G CL
Sbjct: 187 EVTKAYKIQFRKDFGGFLEARAEELVSGGLMILSGQCLPDGIPKALTWQGVVIDMIGDCL 246
Query: 240 WDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQF 299
DLAK+G+ S+EK F++P Y P++ E ++ I++N +F +E M+++ PM + F
Sbjct: 247 MDLAKLGITSKEKIELFSLPTYIPHISEFKANIEQNENFNVETMEEISHPMDYMPLTNDF 306
Query: 300 YLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
S RA+L +I +HFGE ++ +F+ + K + I + K + F+VLKR
Sbjct: 307 ITSMFRAILNTIIEEHFGEGVVNELFSRL-AKRLDKYPIDFKRCKKYVNYFIVLKR 361
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 209/356 (58%), Gaps = 10/356 (2%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
++PM GGD SY HNS +Q+ +D +E R+ I+ LD+ + N T IAD GCS
Sbjct: 7 SYPMSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMN-PNLSTFTIADFGCS 65
Query: 68 VGPNTFISVQNIIEALEFKF----QNLSLPVP-DFQVFFNDHTENDFNTLFRTLPP---R 119
+GPNTF +VQNII+ ++ K Q S P +FQV+FND NDFNTLFRT PP +
Sbjct: 66 IGPNTFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQPPSSKQ 125
Query: 120 KYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMK 179
+Y++ GVPGSF+GR+ P++++H+ N+ HWLSK P+ + SL WN+ I C ++
Sbjct: 126 EYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYIHCNNLIE 185
Query: 180 GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCL 239
V E ++ QF D L ARAEELVPGGLM+ P G+ +T G + +G CL
Sbjct: 186 EVTEAYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVAMYETWSGIVKDTIGDCL 245
Query: 240 WDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQF 299
D+A +GV +EEK FN+P YFP V EL+ I++N F +E M+ + P+ F
Sbjct: 246 QDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMMEIVSHPLEAVQLSNNF 305
Query: 300 YLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
S RA+L +I +HFG +++ +F K +E I K K++ +VLKR
Sbjct: 306 ITSMYRAILSTVIERHFGGSVVDELFRQFAKKLSE-HPIDFEKCKKQMVYHIVLKR 360
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 209/361 (57%), Gaps = 24/361 (6%)
Query: 9 FPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDV---GSYGYDNSYTVRIADLG 65
+PM G SY HNS +Q+ + +A E R I KLD+ +G T RIAD G
Sbjct: 8 YPMSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDLQLSSDFG-----TFRIADFG 62
Query: 66 CSVGPNTFISVQNIIEA-----LEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--- 117
CS+GPNTF Q+II+ LE +N +P+ +FQVFFND NDFNTLFRT P
Sbjct: 63 CSIGPNTFHVAQSIIDTVKSKRLEESTENSLVPL-EFQVFFNDQPTNDFNTLFRTQPLSP 121
Query: 118 PRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRF 177
R+Y++ GVPGSF+GR+ P++++H+ ++ HWLSK P +KS+ WN+ I+C
Sbjct: 122 EREYFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQCNNL 181
Query: 178 MKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGS 237
++ V + ++ QF D E L+ARAEELVPGGLM+ P G+ +T QG + +G
Sbjct: 182 LEEVTKAYKVQFIKDMEIFLDARAEELVPGGLMIVIGECLPDGVSLYETWQGYVMDTIGD 241
Query: 238 CLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPA 297
CL D+AK G+ SEEK F++P YFP EL+ I++NG F +E M+ P+ K
Sbjct: 242 CLMDMAKSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETTSHPLEGKPLTN 301
Query: 298 QFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLH---KEIEVFVVLK 354
F S RA L +I KHFG+ +++ +F + A+ LS H K++ +VLK
Sbjct: 302 DFITSTFRAFLTTIIEKHFGDGVVDELFYRL----AKKLSNHPIDFEMRKKQVVYCIVLK 357
Query: 355 R 355
R
Sbjct: 358 R 358
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 193/364 (53%), Gaps = 28/364 (7%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M G+G SYA NS F + TV + V E V L S + + DLGC+ GP
Sbjct: 10 MNKGEGESSYAQNSSFTQ-TVTSMTMPVLENAVETL--FSKDFHLLQALNAVDLGCAAGP 66
Query: 71 NTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---------KY 121
TF + I +E K + L+ + QV+ ND NDFNTLF+ LP +
Sbjct: 67 TTFTVISTIKRMMEKKCRELNCQTLELQVYLNDLPGNDFNTLFKGLPSKVVGNKCEEVSC 126
Query: 122 YAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKG- 180
Y GVPGSFHGRLFP+++LH+V+S ++HWL++ PK ++ L N+G I ++
Sbjct: 127 YVVGVPGSFHGRLFPRNSLHLVHSCYSVHWLTQAPKGLTSKEGLALNKGKIYISKTSPPV 186
Query: 181 VHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLW 240
V E + +QF DF LN+R++E+VP G MV L S P +D T+ L +
Sbjct: 187 VREAYLSQFHEDFTMFLNSRSQEVVPNGCMVLILRGRLSSDP-SDMGSCFTWELLAVAIA 245
Query: 241 DLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ--QLDQPMRH---KTF 295
+L G+I E+K TFNVP+YFP +EE++ +++RNG F ++ M+ +LD P K
Sbjct: 246 ELVSQGLIDEDKLDTFNVPSYFPSLEEVKDIVERNGSFTIDHMEGFELDSPEMQENDKWV 305
Query: 296 PAQFYLSHLRAVLEGLIGKHFGEELLENI---FNHINTKEAEILSIHNGKLHKEIEVFVV 352
+ + + RA E +I FG E+++ + F HI ++S K+ K + +V
Sbjct: 306 RGEKFATVARAFTEPIISNQFGHEIMDKLYEKFTHI------VVSDFEAKIPKITSIILV 359
Query: 353 LKRI 356
L +I
Sbjct: 360 LSKI 363
|
May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity. Camellia sinensis (taxid: 4442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 0 |
| >sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 189/370 (51%), Gaps = 41/370 (11%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYD-NSYTVRIADLGCSVG 69
M G+G SYA NS F + A+ + A+ + D + + ADLGC+ G
Sbjct: 15 MNRGEGESSYAQNSSFTQQVASMAQPALENAVETL-----FSRDFHLQALNAADLGCAAG 69
Query: 70 PNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---------K 120
PNTF + I +E K + L+ + QV+ ND NDFNTLF+ L
Sbjct: 70 PNTFAVISTIKRMMEKKCRELNCQTLELQVYLNDLFGNDFNTLFKGLSSEVIGNKCEEVP 129
Query: 121 YYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKG 180
Y GVPGSFHGRLFP+++LH+V+S ++HWL++ PK + L N+G I ++
Sbjct: 130 CYVMGVPGSFHGRLFPRNSLHLVHSSYSVHWLTQAPKGLTSREGLALNKGKIYISKTSPP 189
Query: 181 -VHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCL 239
V E + +QF DF LNAR++E+VP G MV L P +D T+ L +
Sbjct: 190 VVREAYLSQFHEDFTMFLNARSQEVVPNGCMVLILRGRQCSDP-SDMQSCFTWELLAMAI 248
Query: 240 WDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAME----------RMQQLDQP 289
+L G+I E+K TFN+P+YF +EE++ +++R+G F ++ MQ+ D+
Sbjct: 249 AELVSQGLIDEDKLDTFNIPSYFASLEEVKDIVERDGSFTIDHIEGFDLDSVEMQENDKW 308
Query: 290 MRHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENI---FNHINTKEAEILSIHNGKLHKE 346
+R + F +RA E +I FG E+++ + F HI ++S KL K
Sbjct: 309 VRGEKFTKV-----VRAFTEPIISNQFGPEIMDKLYDKFTHI------VVSDLEAKLPKT 357
Query: 347 IEVFVVLKRI 356
+ +VL +I
Sbjct: 358 TSIILVLSKI 367
|
Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity. Camellia sinensis (taxid: 4442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 0 |
| >sp|Q0J998|IAMT1_ORYSJ Indole-3-acetate O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=IAMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 179/379 (47%), Gaps = 41/379 (10%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M GG+G SY +NSQ Q + E + ++ S D +T ADLGCS G
Sbjct: 32 MKGGNGDGSYLNNSQAQALHARRMLHFLEETLDAMMERSSS--DKLFTA--ADLGCSCGS 87
Query: 71 NTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------------ 118
N+ V I+ + +++ P+FQVFF+D NDFNTLF+ LPP
Sbjct: 88 NSLFIVDVIVRRVSEAYESRGRDAPEFQVFFSDLPSNDFNTLFQLLPPLLAPVAGSLEEC 147
Query: 119 -----------RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEW 167
R Y+AAGVPG+F+GRLFP ++ V S ++HWLS+ P+ S +
Sbjct: 148 LAAGEGAATATRPYHAAGVPGTFYGRLFPGESIDVFTSTFSLHWLSQVPEEVGDSASPAY 207
Query: 168 NQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTV 227
N G + R + V ++ QF++D L +RA E+ GG M + + SG P
Sbjct: 208 NGGRVFVHRATEAVAAAYKRQFQADLARFLRSRAREMKRGGAMFLACLGRSSGDPADQGG 267
Query: 228 QGATYNFLGSCLW-DLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ- 285
G + W DL + GV+ EK +FN+P Y P ++E +++ +G FA++R++
Sbjct: 268 AGLLFGTHFQDAWDDLVQEGVVEGEKRDSFNIPVYAPSLQEFRDVVRADGAFAIDRLELV 327
Query: 286 -------LDQPMRHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSI 338
+D+P + + +AV L+ H GE +F + + A
Sbjct: 328 RGGSPLVVDRPDDAAEV-GRAMANSCKAVAGVLVDAHIGERRGAQLFERLERRAAR---- 382
Query: 339 HNGKLHKEIEVFVVLKRIS 357
H +L +++ F V+ +S
Sbjct: 383 HARELVEKMHFFHVVCSLS 401
|
Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. MeIAA seems to be an inactive form of IAA. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 0 |
| >sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 176/365 (48%), Gaps = 33/365 (9%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYT-VRIADLGCSVG 69
M GG G SYA NS QR + K + AI Y D T + IADLGCS G
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAIT-----ALYSGDTVTTRLAIADLGCSSG 63
Query: 70 PNTFISVQNIIEALEFKFQNLSLP-VPDFQVFFNDHTENDFNTLFRTLPPRK-----YYA 123
PN +V +I+ +E + + P++Q+F ND NDFN +FR+LP +
Sbjct: 64 PNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFI 123
Query: 124 AGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFM-KGVH 182
GVPGSF+GRLFP++TLH ++S ++ WLS+ P +E N+G+I + V
Sbjct: 124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP------IGIESNKGNIYMANTCPQSVL 177
Query: 183 ETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDL 242
+ QF+ D L RA+E+VPGG MV +++ G A T + L L +
Sbjct: 178 NAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL-GRRSEDRASTECCLIWQLLAMALNQM 236
Query: 243 AKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLS 302
G+I EEK FN+P Y P E+E+ I + G F ++ ++ + T S
Sbjct: 237 VSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGS 296
Query: 303 ----------HLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVV 352
+RAV E L+ HFGE ++E++F+ E +S K I V V
Sbjct: 297 VEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKF---INVIVS 353
Query: 353 LKRIS 357
L R S
Sbjct: 354 LIRKS 358
|
Catalyzes the methylation of the free carboxyl end of the plant hormone salicylic acid (SA). Converts SA to SA methyl ester (MSA). The volatile compound MSA is hypothesized to act as an airborne signal that triggers defense responses in uninfected plants. MSA is an important chemoattractant for moth pollinated flowering plants. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 9 |
| >sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 183/363 (50%), Gaps = 31/363 (8%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M + EV+ M GG+G SYA NS + + + K ++ + + L + ++
Sbjct: 1 MELQEVLR--MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINK--CIK 56
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLS--LPVPDFQVFFNDHTENDFNTLFRTLPP 118
+ADLGC+ GPNT ++V++I+++++ Q L P Q+F ND NDFN++F+ LP
Sbjct: 57 VADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPS 116
Query: 119 ----------RKYYAA---GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSL 165
RK + +PGSF+ RLFP+ ++H ++S + WLS+ P + E +
Sbjct: 117 FYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGI 176
Query: 166 EWNQGSIKCTRFMK-GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFA 224
N+GSI ++ + V + + QF DF + L +EEL G M+ + I +
Sbjct: 177 STNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDAR 236
Query: 225 DTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284
+ + + L + DL G + EEK +FN+P Y P EE++ +++ G F + ++
Sbjct: 237 NAI-----DLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLE 291
Query: 285 QLDQ------PMRHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSI 338
+ + A++ S +RAV E ++ HFGE ++ +IF+ A++L +
Sbjct: 292 TFKVLYDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLPL 351
Query: 339 HNG 341
G
Sbjct: 352 GKG 354
|
Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity. Coffea arabica (taxid: 13443) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 8 |
| >sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 188/377 (49%), Gaps = 46/377 (12%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M + EV+ M GG+G SYA NS F + + K ++ + + L + ++
Sbjct: 1 MELQEVLH--MNGGEGDASYAKNSSFNQLVLAKVKPVLEQCVGELLRANLPNINK--CIK 56
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLS--LPVPDFQVFFNDHTENDFNTLFRTLPP 118
+ADLGC+ GPNT ++V++I+++++ Q + L P QVF D +NDFN++F LP
Sbjct: 57 VADLGCASGPNTLLTVRDIVQSIDKVRQEMKNELERPTIQVFLTDLFQNDFNSVFMLLPS 116
Query: 119 --RKY-----------YAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSL 165
RK A +PGSFHGRLFP+ ++H ++S ++ +LS+ P + E +
Sbjct: 117 FYRKLEKENGRKIGSCLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTELGI 176
Query: 166 EWNQGSIKCTRFM-KGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFA 224
N+ SI ++ V + + QF DF + L R+EEL+ G M+ + I
Sbjct: 177 TANKRSIYSSKASPPPVQKAYLDQFTKDFTTFLRIRSEELLSRGRMLLTCICK------G 230
Query: 225 DTVQGA-TYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM 283
D G T + L + DL G + EEK +FNVP Y VEEL+ +++ G F + +
Sbjct: 231 DEFDGPNTMDLLEMAINDLVVEGHLEEEKLDSFNVPIYAASVEELKCIVEEEGSFEILYL 290
Query: 284 Q----------QLDQPMRHKTFPAQFYLSH---------LRAVLEGLIGKHFGEELLENI 324
+ +D + ++ ++ H LR+V E ++ HFGE ++ +I
Sbjct: 291 ETFKLRYDAGFSIDDDCQVRSHSPEYSDEHARAAHVASLLRSVYEPILANHFGEAIIPDI 350
Query: 325 FNHINTKEAEILSIHNG 341
F+ T A+++ + G
Sbjct: 351 FHRFATNAAKVIRLGKG 367
|
May be involved in the biosynthesis of caffeine. Coffea arabica (taxid: 13443) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 359 | ||||||
| 224069525 | 370 | predicted protein [Populus trichocarpa] | 0.988 | 0.959 | 0.487 | 8e-89 | |
| 224144825 | 351 | predicted protein [Populus trichocarpa] | 0.961 | 0.982 | 0.481 | 6e-88 | |
| 147833899 | 521 | hypothetical protein VITISV_030502 [Viti | 0.963 | 0.664 | 0.468 | 2e-84 | |
| 225462819 | 377 | PREDICTED: probable S-adenosylmethionine | 0.955 | 0.909 | 0.472 | 5e-84 | |
| 296087219 | 806 | unnamed protein product [Vitis vinifera] | 0.963 | 0.429 | 0.468 | 6e-84 | |
| 225456081 | 369 | PREDICTED: probable S-adenosylmethionine | 0.958 | 0.932 | 0.459 | 2e-83 | |
| 225424399 | 360 | PREDICTED: probable S-adenosylmethionine | 0.958 | 0.955 | 0.457 | 1e-81 | |
| 225424405 | 361 | PREDICTED: probable S-adenosylmethionine | 0.947 | 0.941 | 0.442 | 1e-80 | |
| 359488227 | 370 | PREDICTED: probable S-adenosylmethionine | 0.966 | 0.937 | 0.471 | 5e-79 | |
| 297737614 | 347 | unnamed protein product [Vitis vinifera] | 0.938 | 0.971 | 0.440 | 7e-79 |
| >gi|224069525|ref|XP_002302990.1| predicted protein [Populus trichocarpa] gi|222844716|gb|EEE82263.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 179/367 (48%), Positives = 234/367 (63%), Gaps = 12/367 (3%)
Query: 1 MAVDEVVTFP----MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNS 56
MA +E+ P M+GGDG SY NS +Q+G VDA+KE V E I +KLD S G+D+S
Sbjct: 1 MATEEIKELPKSWAMVGGDGPQSYTQNSAYQKGVVDASKEKVTEGIKDKLDFKSLGFDSS 60
Query: 57 Y-TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVP----DFQVFFNDHTENDFNT 111
T RIAD GCSVGPNTF +V+NIIEA+E K+Q P +FQVFFND T NDFNT
Sbjct: 61 NDTFRIADFGCSVGPNTFFAVENIIEAVEQKYQAQFQKSPPLELEFQVFFNDVTTNDFNT 120
Query: 112 LFRTL-PPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQG 170
LF+TL RKY+AAG+PG+F+GRL PKSTLH S + WLSK PK + KS WN+G
Sbjct: 121 LFKTLHSNRKYFAAGLPGTFYGRLLPKSTLHFAYSSYCLQWLSKVPKEVVDSKSPAWNKG 180
Query: 171 SIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGA 230
SI+C K V + + AQF+SD + LNARA+E+V GGLMV + P GI + G
Sbjct: 181 SIQCDGLKKEVTKAYSAQFQSDMNTFLNARAQEIVGGGLMVIIMAGLPDGIFMSQAGVGM 240
Query: 231 TYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPM 290
Y LGSCL D+AK+G ISEEK +FN+P Y+ E+E +I+ NG+F +E M L +
Sbjct: 241 YYELLGSCLVDMAKLGEISEEKVDSFNLPLYYSSSTEIEEIIKENGNFNIEIMDSLSHQI 300
Query: 291 --RHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIE 348
K + +S RAV +GL+ +HFG E++E F H K + SI +G H+ I+
Sbjct: 301 WKTSKKSNIEVSVSGGRAVFQGLVEEHFGSEVVEKTFEHFAKKLVDNFSIFDGAAHEHID 360
Query: 349 VFVVLKR 355
F++LKR
Sbjct: 361 HFILLKR 367
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144825|ref|XP_002336178.1| predicted protein [Populus trichocarpa] gi|222875362|gb|EEF12493.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 237/351 (67%), Gaps = 6/351 (1%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNS--YTVRIADLGCSV 68
M+GGDG SYA NS +QRG + EL+ E I +KL+ S D+S T RIAD GCS
Sbjct: 1 MVGGDGPRSYAQNSSYQRGGLVIVNELMNEGIKDKLEFISPCSDSSNICTFRIADFGCSA 60
Query: 69 GPNTFISVQNIIEALEFKF--QNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAG 125
GPNTF++++ IIEA+E K+ Q + P +FQVFFND T NDFNTLF+TLP +KY+AAG
Sbjct: 61 GPNTFLAMEKIIEAVEQKYHAQFKNSPPLEFQVFFNDVTTNDFNTLFKTLPLYQKYFAAG 120
Query: 126 VPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETF 185
VPG+F+GRLFPKSTL + S ++HWLSK P+ + KS WN+GSI+C+ K V + +
Sbjct: 121 VPGTFYGRLFPKSTLRLAYSSYSLHWLSKVPEEVVDTKSPAWNKGSIQCSGTAKEVAKAY 180
Query: 186 QAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKM 245
AQF++D ++ LNARA+E++ GGLMV ++ P GI + TV G +Y GSCL D+AK+
Sbjct: 181 SAQFKTDMDNFLNARAQEIIGGGLMVIIILGLPDGILLSQTVAGKSYELFGSCLIDMAKL 240
Query: 246 GVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLR 305
GVISEEK TFN+P Y+ +ELE +I+ +GHF +ER+ L+ PM + Q ++S R
Sbjct: 241 GVISEEKVDTFNLPLYYSSAKELEEIIKNHGHFCIERLNMLNHPMMKRKIDVQSHISQFR 300
Query: 306 AVLEGLIGKHFGEELLENIFNHINTKEAEIL-SIHNGKLHKEIEVFVVLKR 355
++ +GL+ HFG + ++ I + K AE S+ N H+ +E F++LKR
Sbjct: 301 SIFQGLLEAHFGRDDVDKILEYHAKKLAENYDSVFNVAKHQHVEHFILLKR 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833899|emb|CAN73170.1| hypothetical protein VITISV_030502 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 232/352 (65%), Gaps = 6/352 (1%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
++ M GDG SYA S +Q+ VDAAK+++ EAI + LD+ + + +S T+RIAD+GCS
Sbjct: 142 SYHMNSGDGPYSYAKYSSYQKAIVDAAKKMLVEAISDNLDINNPSFGSSNTLRIADMGCS 201
Query: 68 VGPNTFISVQNIIEALEFKFQNLSLP--VPDFQVFFNDHTENDFNTLFRTLPP-RKYYAA 124
+GPN FI+VQNI+EA+ K+Q++ +F VFFNDH NDFN LFR+LPP R Y+A
Sbjct: 202 IGPNAFIAVQNIVEAVTLKYQSMQQKPQALEFHVFFNDHXANDFNALFRSLPPSRPYFAV 261
Query: 125 GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHET 184
GVPGSFHGRLFPKS+LH+V+S A+HWLSK PK M L G T + V E
Sbjct: 262 GVPGSFHGRLFPKSSLHIVHSSYALHWLSKVPKEVMEJNFLGLKNGRNYSTT-DEEVLEV 320
Query: 185 FQAQFRSDFESILNARAEELVPGGLMVFSLITG-PSGIPFADTVQGATYNFLGSCLWDLA 243
F +Q++ D +S L ARA+ELV GGLMV L+TG +G F+ T G +N GSCL D+A
Sbjct: 321 FSSQYKRDMQSFLTARAQELVGGGLMVL-LVTGMQNGAIFSKTCSGMVFNLFGSCLMDMA 379
Query: 244 KMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSH 303
G++S EK +F+ P Y+ +ELE+LI+ NG+F +ER++ L +P+ H+ + H
Sbjct: 380 NAGLVSNEKVYSFHFPLYYTTPKELEALIETNGYFNIERIEILARPLEHELPDYRICSFH 439
Query: 304 LRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
LRA +EGL+ +HFG+E++E++F K E I + + KE +FV L+R
Sbjct: 440 LRAAMEGLVEEHFGKEIIEDLFERYTNKLGENSFIFDEEYRKETHLFVFLRR 491
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462819|ref|XP_002266476.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 165/349 (47%), Positives = 230/349 (65%), Gaps = 6/349 (1%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M GDG SYA S +Q+ VDAAK+++ EAI + LD+ + + +S T+RIAD+GCS+GP
Sbjct: 1 MNSGDGPYSYAKYSSYQKAIVDAAKKMLVEAISDNLDINNPSFGSSNTLRIADMGCSIGP 60
Query: 71 NTFISVQNIIEALEFKFQNLSLP--VPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVP 127
N FI+VQNI+EA+ K+Q++ +F VFFNDH NDFN LFR+LPP R Y+A GVP
Sbjct: 61 NAFIAVQNIVEAVTLKYQSMQQKPQALEFHVFFNDHIANDFNALFRSLPPSRPYFAVGVP 120
Query: 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA 187
GSFHGRLFPKS+LH+V+S A+HWLSK PK M L G T + V E F +
Sbjct: 121 GSFHGRLFPKSSLHIVHSSYALHWLSKVPKEVMEINFLGLKNGRNYSTT-DEEVLEVFSS 179
Query: 188 QFRSDFESILNARAEELVPGGLMVFSLITG-PSGIPFADTVQGATYNFLGSCLWDLAKMG 246
Q++ D +S L ARA+ELV GGLMV L+TG +G F+ T G +N GSCL D+A G
Sbjct: 180 QYKRDMQSFLTARAQELVGGGLMVL-LVTGMQNGAIFSKTCSGMVFNLFGSCLMDMANAG 238
Query: 247 VISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRA 306
++S EK +F+ P Y+ +ELE+LI+ NG+F +ER++ L +P+ H+ + HLRA
Sbjct: 239 LVSNEKVYSFHFPLYYTTPKELEALIETNGYFNIERIEILARPLEHELPDYRICSFHLRA 298
Query: 307 VLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
+EGL+ +HFG+E++E++F K E I + + KE +FV L+R
Sbjct: 299 AMEGLVEEHFGKEIIEDLFERYTNKLGENSFIFDEEYRKETHLFVFLRR 347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087219|emb|CBI33593.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 232/352 (65%), Gaps = 6/352 (1%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
++ M GDG SYA S +Q+ VDAAK+++ EAI + LD+ + + +S T+RIAD+GCS
Sbjct: 427 SYHMNSGDGPYSYAKYSSYQKAIVDAAKKMLVEAISDNLDINNPSFGSSNTLRIADMGCS 486
Query: 68 VGPNTFISVQNIIEALEFKFQNLSLP--VPDFQVFFNDHTENDFNTLFRTLPP-RKYYAA 124
+GPN FI+VQNI+EA+ K+Q++ +F VFFNDH NDFN LFR+LPP R Y+A
Sbjct: 487 IGPNAFIAVQNIVEAVTLKYQSMQQKPQALEFHVFFNDHIANDFNALFRSLPPSRPYFAV 546
Query: 125 GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHET 184
GVPGSFHGRLFPKS+LH+V+S A+HWLSK PK M L G T + V E
Sbjct: 547 GVPGSFHGRLFPKSSLHIVHSSYALHWLSKVPKEVMEINFLGLKNGRNYSTT-DEEVLEV 605
Query: 185 FQAQFRSDFESILNARAEELVPGGLMVFSLITG-PSGIPFADTVQGATYNFLGSCLWDLA 243
F +Q++ D +S L ARA+ELV GGLMV L+TG +G F+ T G +N GSCL D+A
Sbjct: 606 FSSQYKRDMQSFLTARAQELVGGGLMVL-LVTGMQNGAIFSKTCSGMVFNLFGSCLMDMA 664
Query: 244 KMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSH 303
G++S EK +F+ P Y+ +ELE+LI+ NG+F +ER++ L +P+ H+ + H
Sbjct: 665 NAGLVSNEKVYSFHFPLYYTTPKELEALIETNGYFNIERIEILARPLEHELPDYRICSFH 724
Query: 304 LRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
LRA +EGL+ +HFG+E++E++F K E I + + KE +FV L+R
Sbjct: 725 LRAAMEGLVEEHFGKEIIEDLFERYTNKLGENSFIFDEEYRKETHLFVFLRR 776
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456081|ref|XP_002277876.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Vitis vinifera] gi|297734281|emb|CBI15528.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/355 (45%), Positives = 220/355 (61%), Gaps = 11/355 (3%)
Query: 10 PMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVG 69
PM GDG SY++NS QRG ++AAK++V EAIV LD+ + S TVR+ADLGCSVG
Sbjct: 15 PMKSGDGLYSYSNNSYLQRGVMNAAKQIVSEAIVENLDI--LKFSPSTTVRVADLGCSVG 72
Query: 70 PNTFISVQNIIEALEFKFQN--LSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGV 126
PNTF +VQNI+EA+E + QN L +P+FQVFFNDHT NDFN+LF +LPP R+Y+AAGV
Sbjct: 73 PNTFFAVQNILEAIELECQNQGLDSQIPEFQVFFNDHTSNDFNSLFSSLPPNRRYHAAGV 132
Query: 127 PGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ 186
PGSF+ RLFP +LH+V+S A+ WLS+ PK + S WN+G I V E +
Sbjct: 133 PGSFYSRLFPNRSLHIVHSSCAIQWLSRVPKKVVDRSSQAWNKGRIYYPSAADEVVEAYS 192
Query: 187 AQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMG 246
AQ D L ARA+E+ GGLM+ P IP + V ++ LG CL D+AK G
Sbjct: 193 AQCAEDMARFLQARAQEIADGGLMILIFAARPDEIPHSQLVANIMHDMLGCCLMDMAKKG 252
Query: 247 VISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD------QPMRHKTFPAQFY 300
++SEEK FN+P Y +ELE+ ++RNG F++ERM+ L Q + AQ
Sbjct: 253 IVSEEKVDMFNLPVYHMSDQELEAAVERNGCFSIERMESLPPISSTLQSLVSTRHKAQAI 312
Query: 301 LSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
H+RA +E LI HFGEE+L+ +F+ + K + S+ + + VLKR
Sbjct: 313 SFHVRAAMEDLIKAHFGEEILDQLFDSYSKKLEQEYSLIESAGTSALNLCAVLKR 367
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424399|ref|XP_002281366.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera] gi|297737618|emb|CBI26819.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 231/352 (65%), Gaps = 8/352 (2%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
+FPM GGDG SY +NS QR +A++ + EAI KLDV + +S R+ADLGCS
Sbjct: 12 SFPMNGGDGPHSYLNNSHLQRQATNASRITIEEAIAKKLDVKCF---SSNPFRLADLGCS 68
Query: 68 VGPNTFISVQNIIEALEFKF--QNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAA 124
VGPNTFI++Q+I+EA+E K+ Q L +P+FQVFFNDH NDFNTLF +LP R+Y+A
Sbjct: 69 VGPNTFIAMQHIVEAVERKYLAQGLKSEMPEFQVFFNDHVANDFNTLFASLPTERRYFAC 128
Query: 125 GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHET 184
GVPGSFHGRLFP+S++H + S +A+HWLSK P+ + + S WN+G I T + V
Sbjct: 129 GVPGSFHGRLFPESSIHFMFSSHALHWLSKVPEELLDKNSPAWNRGRIHYTSGPEEVSHA 188
Query: 185 FQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAK 244
+ AQF D E L+ARA+ELV GG++V + P+GIP + G ++ LGS L D+AK
Sbjct: 189 YAAQFEHDMEIFLSARAKELVFGGMIVLLIPALPTGIPTSHIPIGIMFDLLGSSLMDMAK 248
Query: 245 MGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHL 304
G+ISE + +FN+P Y +E++ SL++RNG+ +ERM+ +D +H + Y +
Sbjct: 249 EGLISEAEVDSFNLPIYATSLEQMTSLVERNGYLIIERMELMDPTSKHVAVSGKDYTMNF 308
Query: 305 RAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKE-IEVFVVLKR 355
RA +EG+ G+HFG +++ +F+ + K E S HKE ++FVVL+R
Sbjct: 309 RAGMEGIFGEHFGSGIIDEVFDRLYKKTVE-FSHQLESSHKEGTQLFVVLRR 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424405|ref|XP_002284898.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/357 (44%), Positives = 224/357 (62%), Gaps = 17/357 (4%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
+FPM GGDG SY +NS QR DA + ++ EAI KLDV + +S R+ADLGCS
Sbjct: 12 SFPMKGGDGPHSYVNNSHLQREATDACRTMIEEAIAQKLDVKCF---SSNPFRLADLGCS 68
Query: 68 VGPNTFISVQNIIEALEFKF--QNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAA 124
VGPNTFIS+Q+I+EA+E K+ Q L +P+FQVFFNDH NDFNTLF +LP R+Y+A
Sbjct: 69 VGPNTFISMQHIVEAVERKYLEQGLKSQIPEFQVFFNDHVANDFNTLFASLPTERRYFAC 128
Query: 125 GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHET 184
GVPGSFHGRLFP+S++H + S +A+HWLSK P+ + + S WN+G I T V
Sbjct: 129 GVPGSFHGRLFPESSIHFMFSSHAIHWLSKVPEELLDKNSPAWNRGRIHYTSAPDEVSHA 188
Query: 185 FQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAK 244
+ AQF D E L+ARA+ELV GG++V ++ P+GIP + G ++ LG+ L D+ K
Sbjct: 189 YAAQFDHDMEIFLSARAKELVVGGIIVLTMAALPNGIPASRIPSGVMFDLLGASLMDMTK 248
Query: 245 MGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ------QLDQPMRHKTFPAQ 298
G+I+E + +FN+P Y P E++ L++RNG F +ERM+ +L P+ K
Sbjct: 249 AGLINEAQVDSFNLPVYAPSQEQMTDLVKRNGCFTIERMELVYRASKLVAPITGKECGM- 307
Query: 299 FYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
HLRA +EG+I KHFG +++ +F+ + K E + ++F L+R
Sbjct: 308 ----HLRAGMEGMIAKHFGSGIIDELFDTFSKKSVEFSHQLESSTREGAQLFAALRR 360
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488227|ref|XP_002266288.2| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 226/352 (64%), Gaps = 5/352 (1%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
++PM GG G SY NS QR + AAK+++ EAIV K+D+ + +++S T+R+AD GCS
Sbjct: 11 SYPMNGGIGCHSYVKNSHIQRALLHAAKDVITEAIVEKVDITNPWFNSSRTLRVADFGCS 70
Query: 68 VGPNTFISVQNIIEALE--FKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-PRKYYAA 124
VGPNTF+ VQNIIEALE ++ + + +P+F VFFNDH NDFNTLFR+LP +Y+AA
Sbjct: 71 VGPNTFVVVQNIIEALELLYRSKRHNPEIPEFHVFFNDHVHNDFNTLFRSLPFSHRYFAA 130
Query: 125 GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIK-CTRFMKGVHE 183
GVPGSFH RLFPKSTLH+++S A+HWLS+ P S WN+G I K V E
Sbjct: 131 GVPGSFHDRLFPKSTLHIIHSSYALHWLSQVPTQLADRNSPAWNKGRIHGLGASSKEVRE 190
Query: 184 TFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLA 243
F AQF D ++ LNARA ELV GGLM+ + P+ + T + LGSCL D+A
Sbjct: 191 AFSAQFSKDLQAFLNARALELVGGGLMLLLVSGLPNEFHSSQTNSAIVLDLLGSCLIDMA 250
Query: 244 KMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSH 303
KMG+ISE+ +FN+ Y ELE+ I++NGHF +E+M++L P+R Q SH
Sbjct: 251 KMGIISEDNVDSFNLSIYRTCPGELEAFIEKNGHFKIEKMEELINPVRWDPPDFQMLASH 310
Query: 304 LRAVLEGLIGKHFGEELLENIFNHINTKEAEILS-IHNGKLHKEIEVFVVLK 354
LRA EG + +HFG E+++ +F K E I++ + KE E+FV LK
Sbjct: 311 LRATFEGALEEHFGNEIMDELFERFTNKIGENSHIIYDQQYIKETEIFVSLK 362
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737614|emb|CBI26815.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 156/354 (44%), Positives = 221/354 (62%), Gaps = 17/354 (4%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M GGDG SY +NS QR DA + ++ EAI KLDV + +S R+ADLGCSVGP
Sbjct: 1 MKGGDGPHSYVNNSHLQREATDACRTMIEEAIAQKLDVKCF---SSNPFRLADLGCSVGP 57
Query: 71 NTFISVQNIIEALEFKF--QNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVP 127
NTFIS+Q+I+EA+E K+ Q L +P+FQVFFNDH NDFNTLF +LP R+Y+A GVP
Sbjct: 58 NTFISMQHIVEAVERKYLEQGLKSQIPEFQVFFNDHVANDFNTLFASLPTERRYFACGVP 117
Query: 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA 187
GSFHGRLFP+S++H + S +A+HWLSK P+ + + S WN+G I T V + A
Sbjct: 118 GSFHGRLFPESSIHFMFSSHAIHWLSKVPEELLDKNSPAWNRGRIHYTSAPDEVSHAYAA 177
Query: 188 QFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGV 247
QF D E L+ARA+ELV GG++V ++ P+GIP + G ++ LG+ L D+ K G+
Sbjct: 178 QFDHDMEIFLSARAKELVVGGIIVLTMAALPNGIPASRIPSGVMFDLLGASLMDMTKAGL 237
Query: 248 ISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ------QLDQPMRHKTFPAQFYL 301
I+E + +FN+P Y P E++ L++RNG F +ERM+ +L P+ K
Sbjct: 238 INEAQVDSFNLPVYAPSQEQMTDLVKRNGCFTIERMELVYRASKLVAPITGKECGM---- 293
Query: 302 SHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
HLRA +EG+I KHFG +++ +F+ + K E + ++F L+R
Sbjct: 294 -HLRAGMEGMIAKHFGSGIIDELFDTFSKKSVEFSHQLESSTREGAQLFAALRR 346
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 359 | ||||||
| TAIR|locus:2166640 | 361 | AT5G38780 [Arabidopsis thalian | 0.963 | 0.958 | 0.410 | 1.7e-68 | |
| TAIR|locus:2144461 | 359 | AT5G38100 [Arabidopsis thalian | 0.947 | 0.947 | 0.416 | 4e-67 | |
| TAIR|locus:2082157 | 348 | AT3G44840 [Arabidopsis thalian | 0.952 | 0.982 | 0.417 | 2.2e-66 | |
| TAIR|locus:504956193 | 351 | AT1G15125 [Arabidopsis thalian | 0.947 | 0.968 | 0.420 | 3.6e-66 | |
| TAIR|locus:2200186 | 363 | AT1G68040 [Arabidopsis thalian | 0.974 | 0.964 | 0.378 | 5.4e-63 | |
| TAIR|locus:2082112 | 348 | FAMT "farnesoic acid carboxyl- | 0.952 | 0.982 | 0.394 | 4.8e-62 | |
| TAIR|locus:2082117 | 379 | AT3G44870 "AT3G44870" [Arabido | 0.947 | 0.897 | 0.389 | 3.4e-61 | |
| TAIR|locus:2033409 | 353 | PXMT1 [Arabidopsis thaliana (t | 0.938 | 0.954 | 0.389 | 5.1e-58 | |
| TAIR|locus:2033414 | 353 | AT1G66690 "AT1G66690" [Arabido | 0.927 | 0.943 | 0.379 | 3.7e-55 | |
| TAIR|locus:2033389 | 352 | AT1G66720 [Arabidopsis thalian | 0.938 | 0.957 | 0.370 | 1.1e-53 |
| TAIR|locus:2166640 AT5G38780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 146/356 (41%), Positives = 209/356 (58%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
++PM GGD SY HNS +Q+ +D +E R+ I+ LD+ + N T IAD GCS
Sbjct: 7 SYPMSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMN-PNLSTFTIADFGCS 65
Query: 68 VGPNTFISVQNIIEALEFKF----QNLSLPVP-DFQVFFNDHTENDFNTLFRTLPP---R 119
+GPNTF +VQNII+ ++ K Q S P +FQV+FND NDFNTLFRT PP +
Sbjct: 66 IGPNTFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQPPSSKQ 125
Query: 120 KYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMK 179
+Y++ GVPGSF+GR+ P++++H+ N+ HWLSK P+ + SL WN+ I C ++
Sbjct: 126 EYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYIHCNNLIE 185
Query: 180 GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCL 239
V E ++ QF D L ARAEELVPGGLM+ P G+ +T G + +G CL
Sbjct: 186 EVTEAYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVAMYETWSGIVKDTIGDCL 245
Query: 240 WDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQF 299
D+A +GV +EEK FN+P YFP V EL+ I++N F +E M+ + P+ F
Sbjct: 246 QDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMMEIVSHPLEAVQLSNNF 305
Query: 300 YLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
S RA+L +I +HFG +++ +F K +E I K K++ +VLKR
Sbjct: 306 ITSMYRAILSTVIERHFGGSVVDELFRQFAKKLSEH-PIDFEKCKKQMVYHIVLKR 360
|
|
| TAIR|locus:2144461 AT5G38100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 149/358 (41%), Positives = 212/358 (59%)
Query: 9 FPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSV 68
+PM G SY HNS +Q+ + +A E R I KLD+ D T RIAD GCS+
Sbjct: 8 YPMSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDL-QLSSDFG-TFRIADFGCSI 65
Query: 69 GPNTFISVQNIIEA-----LEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P-RK 120
GPNTF Q+II+ LE +N +P+ +FQVFFND NDFNTLFRT P P R+
Sbjct: 66 GPNTFHVAQSIIDTVKSKRLEESTENSLVPL-EFQVFFNDQPTNDFNTLFRTQPLSPERE 124
Query: 121 YYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKG 180
Y++ GVPGSF+GR+ P++++H+ ++ HWLSK P +KS+ WN+ I+C ++
Sbjct: 125 YFSVGVPGSFYGRVLPRNSIHIGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQCNNLLEE 184
Query: 181 VHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLW 240
V + ++ QF D E L+ARAEELVPGGLM+ P G+ +T QG + +G CL
Sbjct: 185 VTKAYKVQFIKDMEIFLDARAEELVPGGLMIVIGECLPDGVSLYETWQGYVMDTIGDCLM 244
Query: 241 DLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFY 300
D+AK G+ SEEK F++P YFP EL+ I++NG F +E M+ P+ K F
Sbjct: 245 DMAKSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETTSHPLEGKPLTNDFI 304
Query: 301 LSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIH--NGKLHKEIEVF-VVLKR 355
S RA L +I KHFG+ +++ +F + K LS H + ++ K+ V+ +VLKR
Sbjct: 305 TSTFRAFLTTIIEKHFGDGVVDELFYRLAKK----LSNHPIDFEMRKKQVVYCIVLKR 358
|
|
| TAIR|locus:2082157 AT3G44840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 147/352 (41%), Positives = 212/352 (60%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
+F M+GG+G SY +S++Q G ++AA E + EAI KL++ S V IAD GCS
Sbjct: 4 SFTMIGGEGPESYRQHSKYQGGLLEAATEKINEAISTKLNIDLA----SNLVNIADFGCS 59
Query: 68 VGPNTFISVQNIIEALEFKFQNLS-LPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAG 125
GPNTF +VQ II+A+E K+Q + L +FQVFFND + NDFNTLF+TLPP RKY+A G
Sbjct: 60 TGPNTFRAVQTIIDAVEHKYQQENNLEEIEFQVFFNDSSNNDFNTLFKTLPPARKYFATG 119
Query: 126 VPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETF 185
VP SF GR+ P+S+LHV S ++H+LSK PK S WN+ I CT F K V +
Sbjct: 120 VPASFFGRVLPRSSLHVGVSSYSLHFLSKIPKKIKDCDSHAWNK-DIHCTGFSKEVVRAY 178
Query: 186 QAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKM 245
Q++ D ES L ARA+ELV GGL+ P+G+ ++T+ G + +GS L D+AK
Sbjct: 179 LDQYKIDMESFLTARAQELVSGGLLFLLGSCLPNGVQMSETLNGMMIDCIGSSLNDIAKQ 238
Query: 246 GVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLR 305
G+I +EK TF +P Y Y E++ +I+ N ++ +ER + Q +F +
Sbjct: 239 GLIDQEKLDTFKLPIYVAYAGEIKQIIEDNVYYTIERFDIISQENEEIPLDPEFLTVSFK 298
Query: 306 AVLEGLIGKHFGEELLENIFNHINTKEAEIL-SIHNGKLHKEIEVFVVLKRI 356
+ G++ HFG+ ++E F + TK E+L + N K ++ +VLKRI
Sbjct: 299 VTVGGIVASHFGQHVMEKTFEVVKTKTQEMLPQLANAK--PGMQYLIVLKRI 348
|
|
| TAIR|locus:504956193 AT1G15125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 148/352 (42%), Positives = 214/352 (60%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M GGDG SYA NS +QRG ++AA+ L+R I +LD+ ++ + +S+T IAD GCS GP
Sbjct: 1 MNGGDGASSYARNSSYQRGAIEAAEALLRNEINARLDITNHSF-SSFT--IADFGCSSGP 57
Query: 71 NTFISVQNIIEALEFKFQNLSLP---VPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGV 126
NT I+V II+AL KF + SLP P FQVFFND + DFN LF LPP R Y+ AGV
Sbjct: 58 NTVIAVDIIIQALYHKFTS-SLPNTTTPQFQVFFNDVSHTDFNALFALLPPQRPYFVAGV 116
Query: 127 PGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ 186
PGSF+G LFPK+ L++ S A+ WLS P S +N+G I T V + +
Sbjct: 117 PGSFYGNLFPKAHLNLAYSSCALCWLSDLPSELTDTSSPAYNRGRIHYTGASAEVAQAYS 176
Query: 187 AQFRSDFESILNARAEELVPGGLMVFSLITG-PSG-IPFADTVQGATYNFLGSCLWDLAK 244
+Q++ D + L+AR++EL GLM ++ G P G + + G+ ++ LGSCL D+AK
Sbjct: 177 SQYKKDIKLFLHARSQELAENGLMAL-IVPGVPDGFLDCQEASTGSEFDLLGSCLMDMAK 235
Query: 245 MGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFP-AQFYLSH 303
G+I EE+ +FN+P Y+ +ELE +I+ NG +++M+ L T P + + +
Sbjct: 236 EGIIEEEEVNSFNLPIYYTTPKELEDIIRSNGELKIDKMETLGSMDAQDTMPDLESRVLY 295
Query: 304 LRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
LRAVLEGL+ HFG ++L+++F+ K A I + HK I +F +L R
Sbjct: 296 LRAVLEGLVRTHFGHQILDDLFDRYALKLAHSSFILQPQTHKSIMIFALLSR 347
|
|
| TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 136/359 (37%), Positives = 207/359 (57%)
Query: 5 EVV--TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIA 62
E+V + PM GGDG SY+ NS QR T KE + + ++ KL+ + +S T RIA
Sbjct: 5 EIVRNSLPMSGGDGPNSYSKNSHLQRKTTSLLKEKIDKLVLEKLNAKTLISSDSNTFRIA 64
Query: 63 DLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKY 121
DLGC+ GPNTF V NII+++E + + P+F VFFND +NDFNTLF +LP R Y
Sbjct: 65 DLGCATGPNTFFLVDNIIKSIETSLRKSNSSKPEFLVFFNDLPQNDFNTLFTSLPQDRSY 124
Query: 122 YAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLE-WNQGSIKCTRFMKG 180
A GVPGSF+GR+ P+S++H+V + A HWLS PK +L+KS + WN+G + +
Sbjct: 125 LAVGVPGSFYGRVLPQSSVHIVVTMGATHWLSSVPK-EVLDKSSKAWNKGKVHYSNAADE 183
Query: 181 VHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLW 240
V + ++ QF D E L ARA E+V GGL+V + P G+PF++ Y + L
Sbjct: 184 VVKAYRDQFGRDMEKFLEARATEIVSGGLLVVGMCGIPKGMPFSNLADSIMYTSMADVLT 243
Query: 241 DLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQP--MRHKTF--P 296
+ G+ISEE+ TFN+P Y EE+ L+ +NG F +E M+ +D ++ T
Sbjct: 244 QMHSEGLISEEQVDTFNIPIYSATPEEVTVLVVKNGCFTVESMELMDPTAWLKRPTNVED 303
Query: 297 AQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
+ ++ ++A + L HFGE LL+++F+ + K + +++ +F L+R
Sbjct: 304 VRHWMVCIKATMGSLFINHFGEHLLDDVFDRLTAKLVGLTEKIESSYREKVMLFFALQR 362
|
|
| TAIR|locus:2082112 FAMT "farnesoic acid carboxyl-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 138/350 (39%), Positives = 209/350 (59%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
+F M+GG+G SY +S++Q V AAKE + EAI KLD+ S V IAD GCS
Sbjct: 4 SFTMIGGEGPNSYREHSKYQGALVIAAKEKINEAISTKLDIDF----TSNLVNIADFGCS 59
Query: 68 VGPNTFISVQNIIEALEFKFQNLS-LPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAG 125
GPNTF +VQ +I+A+E K++ S + +FQVFFND + NDFNTLF+TLPP R Y+A+G
Sbjct: 60 SGPNTFTAVQTLIDAVENKYKKESNIEGIEFQVFFNDSSNNDFNTLFKTLPPARLYFASG 119
Query: 126 VPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETF 185
VPGSF GR+ PK++LHV S ++H++SK PK SL WN+ I C+ K V + +
Sbjct: 120 VPGSFFGRVLPKNSLHVGVSSYSLHFVSKVPKEIKDRDSLVWNK-DIHCSGSSKEVVKLY 178
Query: 186 QAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKM 245
Q++ D S L ARA+ELV GGL++ P+G+ +TV+G +F+GS L ++A
Sbjct: 179 LGQYKIDVGSFLTARAQELVSGGLLLLLGSCRPTGVQMFETVEGMMIDFIGSSLNEIANQ 238
Query: 246 GVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLR 305
G+I ++K TF +P Y P V+EL+ +I+ N F +E +++ ++ S +
Sbjct: 239 GLIDQQKLDTFKLPIYAPNVDELKQIIEDNKCFTIEAFEKISHAKGEYPLDPEYLTSAFK 298
Query: 306 AVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
+ G + FG++ +E + + K E+L K ++ +VL+R
Sbjct: 299 VTVGGSVASLFGQDGMEKTYELVKEKTQEMLP-QIAKAKPGMQYLIVLRR 347
|
|
| TAIR|locus:2082117 AT3G44870 "AT3G44870" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 136/349 (38%), Positives = 207/349 (59%)
Query: 8 TFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCS 67
+F M+GG+G SY +S++Q V+AAKE + EAI KLD+ S V IAD GCS
Sbjct: 4 SFTMIGGEGPNSYRDHSKYQGALVEAAKEKINEAISTKLDIDF----TSNLVNIADFGCS 59
Query: 68 VGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGV 126
GPNTF +VQ +I+A+E K++ S +FQVFFND + NDFNTLF+TLPP R Y+A+GV
Sbjct: 60 SGPNTFTAVQTLIDAVENKYKKESNI--EFQVFFNDSSNNDFNTLFKTLPPARLYFASGV 117
Query: 127 PGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ 186
PGSF GR+ P+++LH+ S ++H++SK PK S WN+ I C+ K V + +
Sbjct: 118 PGSFFGRVLPRNSLHLGVSAYSLHFISKIPKEVKDRDSPVWNK-DIHCSGSSKEVAKLYL 176
Query: 187 AQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMG 246
Q++ D S LNARA+ELV GGL++ P+G+ +TV+G +F+G+ L ++A G
Sbjct: 177 GQYKIDVGSFLNARAQELVSGGLLLLLGSCRPNGVQMFETVEGMMIDFIGASLNEIANQG 236
Query: 247 VISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRA 306
+I ++K TF +P Y P +EL+ +I+ NG F +E + + +F +
Sbjct: 237 LIDQQKLDTFKLPIYAPQADELKQIIEDNGCFTIEVFENIIHAKGEYPLDPEFLTVSFKV 296
Query: 307 VLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
+ G + FG++ +E F + K E+L K ++ +VL+R
Sbjct: 297 TVGGSVASLFGQDGMEKTFELVKEKTQEMLP-QIAKAKPGMQYLIVLRR 344
|
|
| TAIR|locus:2033409 PXMT1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 137/352 (38%), Positives = 200/352 (56%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M+GGDG SY S +QR ++A K+ + +AI LD+ N + V AD GC+ GP
Sbjct: 9 MIGGDGPESYNQQSSYQRALLEATKDKMTKAISANLDLDLIS--NRFIV--ADFGCASGP 64
Query: 71 NTFISVQNIIEALEFKFQNLSLPVP----DFQVFFNDHTENDFNTLFRTLPP-RKYYAAG 125
NTF++VQNII+A+E K++ + P +FQV FND + NDFNTLF+TLPP R+Y++AG
Sbjct: 65 NTFVAVQNIIDAVEEKYRRETGQNPADNIEFQVLFNDFSLNDFNTLFQTLPPGRRYFSAG 124
Query: 126 VPGSFHGRLFPKSTLHV-VNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHET 184
VPGSF R+ PK + H+ V S+ A H+ SK PK M S WN+ ++CT F V +
Sbjct: 125 VPGSFFERVLPKESFHIGVMSY-AFHFTSKIPKGIMDRDSPLWNK-DMQCTGFNPAVKKA 182
Query: 185 FQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAK 244
+ Q+ D + +L+ARAEELVPGGLM+ G+ ++T +G +F+G L DLAK
Sbjct: 183 YLDQYSIDTKILLDARAEELVPGGLMLLLGSCLRDGVKMSETPKGTVMDFIGESLSDLAK 242
Query: 245 MGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHL 304
GV +EK TF YF E+ +I+ NG F +E + + F +
Sbjct: 243 QGVTEQEKVDTFRTSIYFAEQGEIRQIIEENGKFTIEAFEDIIHAKNEFPFDPKTLAISF 302
Query: 305 RAVLEGLIGKHFGEELLENIFNHINTKEAEILS-IHNGKLHKEIEVFVVLKR 355
+A I HFG E++ F + K E +S +HN K ++ +VL++
Sbjct: 303 KAFYGAFISAHFGVEVMRKAFELVEVKAREQISRLHNSK--PGMQYLIVLRK 352
|
|
| TAIR|locus:2033414 AT1G66690 "AT1G66690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 135/356 (37%), Positives = 201/356 (56%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M+GG G SY S +QR ++AAK+ + EAI LD+ N + V AD GC+ GP
Sbjct: 9 MIGGYGPESYNQQSSYQRALLEAAKDKMTEAISANLDLDLIS--NRFIV--ADFGCASGP 64
Query: 71 NTFISVQNIIEALEFKFQNLSLPVPD----FQVFFNDHTENDFNTLFRTLPP-RKYYAAG 125
NTF++VQNII+A+E K+ + P+ FQV FND NDFNTLF+TLPP R+Y++AG
Sbjct: 65 NTFVAVQNIIDAVEEKYLRETGQNPEDNIEFQVLFNDLRINDFNTLFQTLPPGRRYFSAG 124
Query: 126 VPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETF 185
VPGSF R+ PK + H+ A + SK PK M S WN+ ++CT F V + +
Sbjct: 125 VPGSFFNRVLPKQSFHIAVMSYAFLFTSKIPKGIMDRDSPLWNK-DMQCTGFNPAVKKAY 183
Query: 186 QAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKM 245
Q+ D +++L+ARAEEL+PGGLM+ G+ ++T++G +F+G L DLA+
Sbjct: 184 LEQYSIDTKNLLDARAEELMPGGLMLLLGSCMRDGVKMSETLKGTVMDFIGESLNDLAQK 243
Query: 246 GVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL-----DQPMRHKTFPAQFY 300
GV +EK TF YF E+ +I+ NG F +E + + + P+ KT F
Sbjct: 244 GVTEQEKVDTFKTSIYFAEQGEIRQIIEENGKFTIEAFEDIIHSKNEFPLDPKTLAISF- 302
Query: 301 LSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILS-IHNGKLHKEIEVFVVLKR 355
+A+ I HFG E++ F + K E +S +H K+ ++ +VL++
Sbjct: 303 ----KALYGAFISAHFGIEVMRKAFELVEVKAREQISRLH--KVKPGMQYLIVLRK 352
|
|
| TAIR|locus:2033389 AT1G66720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 130/351 (37%), Positives = 194/351 (55%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M+GG+G SY +S +QR + AAK+ + I L + N ++V AD GC+ GP
Sbjct: 9 MVGGEGPESYKQHSSYQRDLLKAAKDKINAVISTNLSLNLIS--NRFSV--ADFGCASGP 64
Query: 71 NTFISVQNIIEALEFKFQNLSLPVPD----FQVFFNDHTENDFNTLFRTLPP-RKYYAAG 125
NTF++VQNII+A+E K+ + PD FQV FND + NDFNTLF+ LP R+YY+A
Sbjct: 65 NTFVAVQNIIDAVEEKYLRETGQNPDDNIEFQVLFNDLSNNDFNTLFQGLPSGRRYYSAA 124
Query: 126 VPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETF 185
+PGSF R+ PK ++H+ A + SK PK S WN+ + CT F V + +
Sbjct: 125 IPGSFFDRVLPKHSIHIGVMNYAFQFTSKIPKGISDRNSPLWNR-DMHCTGFNNKVKKAY 183
Query: 186 QAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKM 245
QF D ++IL+ARAEELVP GLM+ GI ++T +G + +G+ L DLA+
Sbjct: 184 LDQFSLDSKNILDARAEELVPEGLMLLLGSCLRDGIKMSETYRGIVLDLIGASLNDLAQQ 243
Query: 246 GVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLR 305
GVI ++K +FN+ Y EL +I+ NG F +E + + QP P +S L+
Sbjct: 244 GVIEKDKVESFNITLYIAEEGELRQIIEENGKFTIEAFEDIIQPNGESLDPKILAVS-LK 302
Query: 306 AVLEGLIGKHFGEELLENIFNHINTK-EAEILSIHNGKLHKEIEVFVVLKR 355
+ G++ HFG E + F + K E + N K ++ +VL++
Sbjct: 303 SAFGGILSAHFGAEAMMKAFELVEAKAHQEFSRLQNAK--PTMQYLIVLRK 351
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 359 | |||
| pfam03492 | 331 | pfam03492, Methyltransf_7, SAM dependent carboxyl | 1e-103 | |
| PLN02668 | 386 | PLN02668, PLN02668, indole-3-acetate carboxyl meth | 3e-54 |
| >gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = e-103
Identities = 130/316 (41%), Positives = 192/316 (60%), Gaps = 18/316 (5%)
Query: 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLS-LPVPDFQVFFNDHTENDFNTLFRTL 116
+++IADLGCS GPNTF++V NII+ +E K+Q + L P+FQVFFND NDFNTLF+ L
Sbjct: 17 SIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVFFNDLPSNDFNTLFKLL 76
Query: 117 PP-----RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGS 171
PP R Y+ +GVPGSF+GRLFP+++LH V+S ++HWLS+ PK ++S WN+G+
Sbjct: 77 PPFQKKKRSYFVSGVPGSFYGRLFPRNSLHFVHSSYSLHWLSQVPKGLEDKESPAWNKGN 136
Query: 172 IKCTRFM-KGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGA 230
I + + V++ + QF+ DF L ARAEELV GGLMV + + G + ++T G
Sbjct: 137 IYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGLMVLTFL-GRPSVDPSETECGI 195
Query: 231 TYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPM 290
++ LG L DL G+I EEK +FN+P Y P EE++ +I++ G F +ER++ + P
Sbjct: 196 FWDLLGDALNDLVSEGLIEEEKLDSFNIPIYAPSPEEVKEIIEKEGSFTIERLEIIKHPN 255
Query: 291 RHKTFPAQFYL----------SHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHN 340
+ S +RAV+E ++ HFGE++++ +F+ K +E LS
Sbjct: 256 GEVPWDESDSEDKVEDGRFVASSVRAVVEPMLVAHFGEDIMDKLFDRYAKKLSEHLSKEL 315
Query: 341 GKLHKEIEVFVVLKRI 356
K I V V L R
Sbjct: 316 QNAKKTINVVVSLSRK 331
|
This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331 |
| >gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 3e-54
Identities = 111/378 (29%), Positives = 182/378 (48%), Gaps = 41/378 (10%)
Query: 9 FPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSV 68
M GG G SYA+NSQ Q + L+ E LD DLGCS
Sbjct: 19 LCMKGGKGEGSYANNSQAQALHARSMLHLLEET----LDNVHLNSSPEVPFTAVDLGCSS 74
Query: 69 GPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---------- 118
G NT + I++ + ++++ L P+F FF+D NDFNTLF+ LPP
Sbjct: 75 GSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEE 134
Query: 119 -------RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGS 171
R Y+AAGVPGSF+ RLFP ++ V +S ++HWLS+ P+ ++S +N+G
Sbjct: 135 CLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGR 194
Query: 172 IKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGAT 231
+ + ++ QF++D L ARA+E+ GG M + S P T QG
Sbjct: 195 VFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDP---TDQGGA 251
Query: 232 YNFLGSCL---W-DLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ-- 285
G+ W DL + G+++ EK +FN+P Y P +++ + +++ NG FA+++++
Sbjct: 252 GLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311
Query: 286 ------LDQPMRHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIH 339
+++P S R+V L+ H GEEL +F + + H
Sbjct: 312 GGSPLVVNEPDDAAEVGRAMANS-CRSVAGVLVDAHIGEELSNELFLRVERRATS----H 366
Query: 340 NGKLHKEIEVFVVLKRIS 357
+L ++++ F ++ +S
Sbjct: 367 AKELLEKLQFFHIVASLS 384
|
Length = 386 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 359 | |||
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 100.0 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 100.0 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.65 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.6 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.39 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.32 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.29 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.27 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.23 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.22 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.2 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.19 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.16 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.15 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.12 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.08 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.07 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.04 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.03 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.03 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.01 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.0 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.94 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.93 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.87 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.87 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.85 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.85 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.82 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.82 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.81 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.8 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.76 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.68 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.63 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.63 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.61 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.6 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.59 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.57 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.54 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.53 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.53 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.51 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.51 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.5 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.49 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.46 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.45 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.4 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.38 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.37 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.37 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.37 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.36 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.36 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.35 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.32 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.27 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.26 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.22 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.19 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.18 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.16 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.16 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.13 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.13 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.1 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.09 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.07 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.06 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.04 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.04 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.03 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.02 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.98 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.98 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.97 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 97.97 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.97 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 97.96 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.93 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.93 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.88 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.85 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.81 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.8 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 97.79 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 97.76 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.75 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.73 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.72 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.7 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.69 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.64 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.62 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 97.61 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.52 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.4 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.38 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.32 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.32 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.31 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.31 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.29 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.29 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.28 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.27 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.26 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.25 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.21 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 97.17 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.1 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.08 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.04 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.04 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.0 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.0 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 96.88 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 96.85 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 96.73 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 96.73 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 96.71 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 96.67 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.67 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.62 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 96.45 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 96.43 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.4 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.32 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.29 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 96.29 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.28 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 96.18 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.13 | |
| PLN02366 | 308 | spermidine synthase | 96.13 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 96.11 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 96.11 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 96.09 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 96.07 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 96.06 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 95.97 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 95.9 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 95.76 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 95.71 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 95.68 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.68 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 95.63 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 95.48 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 95.35 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 95.24 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 95.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 95.19 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 95.12 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 94.99 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 94.69 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 94.63 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 94.41 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 94.1 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 93.97 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 93.95 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 93.76 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 93.68 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 93.47 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 92.76 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 92.65 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 91.98 | |
| PLN02823 | 336 | spermine synthase | 91.67 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 91.41 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 91.0 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 90.96 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 90.58 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 90.39 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 90.35 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 88.56 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 88.43 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 88.32 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 87.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 87.57 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 87.37 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 87.34 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.3 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 87.29 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 86.85 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 86.84 | |
| PLN02476 | 278 | O-methyltransferase | 85.84 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 85.32 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 84.26 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 82.6 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 81.68 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 80.45 |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-94 Score=703.72 Aligned_cols=346 Identities=29% Similarity=0.500 Sum_probs=310.8
Q ss_pred ccc-eeeeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHH
Q 018250 4 DEV-VTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEA 82 (359)
Q Consensus 4 ~~~-~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~ 82 (359)
|++ ++|||+||+|++||++||.+|+.++..++|+|+++|++.. .... +.++++|||||||+|+||+.+++.||++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~-~~~~---p~~~~~iaDlGcs~G~ntl~~vs~iI~~ 88 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVH-LNSS---PEVPFTAVDLGCSSGSNTIHIIDVIVKH 88 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC---CCcceeEEEecCCCCccHHHHHHHHHHH
Confidence 445 7899999999999999999999999999999999998753 1211 1268999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----------------CcccccccCcccccCCCCCCceeEEEe
Q 018250 83 LEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----------------RKYYAAGVPGSFHGRLFPKSTLHVVNS 145 (359)
Q Consensus 83 ~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----------------~~~~~~~vpgsfy~~l~p~~s~d~~~S 145 (359)
|+++|++.+.+.|++||+|||||+||||+||++|+. ++||++|||||||+||||++|+||+||
T Consensus 89 i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~S 168 (386)
T PLN02668 89 MSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHS 168 (386)
T ss_pred HHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEe
Confidence 999998766678999999999999999999999974 239999999999999999999999999
Q ss_pred cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCC
Q 018250 146 FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFAD 225 (359)
Q Consensus 146 ~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~ 225 (359)
++||||||++|+.+.|+.+++||||+|||++++|+|.+||++||++||..||++|++||+|||+||++++||++.++..+
T Consensus 169 s~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~ 248 (386)
T PLN02668 169 AFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQ 248 (386)
T ss_pred eccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988666555
Q ss_pred cchhHHHHH-HHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCC-CC--C----CCh
Q 018250 226 TVQGATYNF-LGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMR-HK--T----FPA 297 (359)
Q Consensus 226 ~~~~~~~~~-l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~-~~--~----~~~ 297 (359)
...+.+|+. +.++|++||.||+|++||+|+||+|+|+||.+|++++|+++|+|+|+++|.++...+ +. + ..+
T Consensus 249 ~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g 328 (386)
T PLN02668 249 GGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVG 328 (386)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHH
Confidence 435566776 999999999999999999999999999999999999999999999999999874322 11 1 124
Q ss_pred hHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEE
Q 018250 298 QFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLK 354 (359)
Q Consensus 298 ~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 354 (359)
..+++++||++||++.+|||++++|+||+||+++++++++... +..++++++|+|.
T Consensus 329 ~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~-~~~~~~~~~~sL~ 384 (386)
T PLN02668 329 RAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELL-EKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhc-ccCceEEEEEEEe
Confidence 5789999999999999999999999999999999999888642 5578888888885
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-87 Score=654.97 Aligned_cols=314 Identities=40% Similarity=0.701 Sum_probs=261.5
Q ss_pred HHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCC-CCCCCceEEecCCCCCchHHHHHhC
Q 018250 38 VREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLS-LPVPDFQVFFNDHTENDFNTLFRTL 116 (359)
Q Consensus 38 l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~-~~~p~~~v~~nDLp~NDFn~lf~~l 116 (359)
+++||.+++.... .+++++|||||||+|+||+.+++.||++|+++|++.+ .++|+|||||||||+||||+||++|
T Consensus 1 ~~~ai~~~~~~~~----~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l 76 (334)
T PF03492_consen 1 LEEAIKELYNSSN----NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSL 76 (334)
T ss_dssp -HHHHHHHHHSTT----TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCH
T ss_pred ChHHHHHHHhcCC----CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhC
Confidence 4677777653332 4789999999999999999999999999999998765 6789999999999999999999999
Q ss_pred CC--------CcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeec-CCCHHHHHHHHH
Q 018250 117 PP--------RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCT-RFMKGVHETFQA 187 (359)
Q Consensus 117 ~~--------~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~-~~~~~~~~~y~~ 187 (359)
+. +.||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++ +++++|.+||++
T Consensus 77 ~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~ 156 (334)
T PF03492_consen 77 PSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAK 156 (334)
T ss_dssp HHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHH
T ss_pred hhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHH
Confidence 85 479999999999999999999999999999999999999999999999999999998 679999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHH
Q 018250 188 QFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEE 267 (359)
Q Consensus 188 Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E 267 (359)
||++||.+||++||+||+|||+||++++|+++.++.+. +.+.+|++|+++|++||.||+|+++++|+||+|+|+||.+|
T Consensus 157 Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eE 235 (334)
T PF03492_consen 157 QFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSST-GSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEE 235 (334)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTST-TCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHH
T ss_pred HHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccC-CcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHH
Confidence 99999999999999999999999999999998554433 34568999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeEeEEEEeecCCCCCC----------CChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhh
Q 018250 268 LESLIQRNGHFAMERMQQLDQPMRHKT----------FPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILS 337 (359)
Q Consensus 268 ~~~~i~~~G~F~i~~le~~~~~~~~~~----------~~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~ 337 (359)
++++|+++|+|+|+++|.++.+.+..+ ..++.+++++||+.+|++.+|||++++|+||+||+++++++++
T Consensus 236 v~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~ 315 (334)
T PF03492_consen 236 VRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLE 315 (334)
T ss_dssp HHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999974333211 2467899999999999999999999999999999999999998
Q ss_pred hhhcCCcceEEEEEEEEec
Q 018250 338 IHNGKLHKEIEVFVVLKRI 356 (359)
Q Consensus 338 ~~~~~~~~~~~~~~~l~r~ 356 (359)
....+.+++++++++|+||
T Consensus 316 ~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 316 KEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HTHTT-BEEEEEEEEEEE-
T ss_pred HhhccCCCcEEEEEEEeeC
Confidence 7655668999999999997
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=141.31 Aligned_cols=226 Identities=17% Similarity=0.179 Sum_probs=147.1
Q ss_pred ccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCC
Q 018250 17 TCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPD 96 (359)
Q Consensus 17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~ 96 (359)
+..|.+++..|.+.+..+++.+ . .....+|+|+|||+|..+..+. +++ |.
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l----------~-----~~~~~~vLDlGcG~G~~~~~l~--------~~~-------p~ 53 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARV----------G-----AERARRVVDLGCGPGNLTRYLA--------RRW-------PG 53 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhC----------C-----CCCCCEEEEEcCCCCHHHHHHH--------HHC-------CC
Confidence 3579999999988775544333 1 1345899999999999887663 332 45
Q ss_pred ceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecC
Q 018250 97 FQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTR 176 (359)
Q Consensus 97 ~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~ 176 (359)
.+|+..|+..++.... +.. .--|. .+++ +.+.|++++|+++|+.++||+.+
T Consensus 54 ~~v~gvD~s~~~~~~a-~~~--~~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d---------------------- 104 (255)
T PRK14103 54 AVIEALDSSPEMVAAA-RER--GVDAR---TGDV-RDWKPKPDTDVVVSNAALQWVPE---------------------- 104 (255)
T ss_pred CEEEEEECCHHHHHHH-Hhc--CCcEE---EcCh-hhCCCCCCceEEEEehhhhhCCC----------------------
Confidence 6899999976554332 211 11122 2455 34567889999999999999753
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHH--HHHHHHHHcCCCChhhhc
Q 018250 177 FMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLG--SCLWDLAKMGVISEEKAR 254 (359)
Q Consensus 177 ~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~--~al~~lv~eGli~~e~~d 254 (359)
...+|+.-++.|+|||++++++.+.... + . ..+...+. ..|..... ..
T Consensus 105 ----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~----~-~~~~~~~~~~~~w~~~~~--------~~ 154 (255)
T PRK14103 105 ----------------HADLLVRWVDELAPGSWIAVQVPGNFDA-P----S-HAAVRALARREPWAKLLR--------DI 154 (255)
T ss_pred ----------------HHHHHHHHHHhCCCCcEEEEEcCCCcCC-h----h-HHHHHHHhccCchhHHhc--------cc
Confidence 2235666778999999999987653221 0 0 00111111 12322110 01
Q ss_pred cCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHH-hhhhhhhccCHHHHHHHHHHHHHHHH
Q 018250 255 TFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAV-LEGLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 255 ~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~-~~~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
.+..+..+.+.+++.+++++.| |++...+..... .+ ...+.+..|+++. +.++++ .++++.++++.+.+.+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~ 229 (255)
T PRK14103 155 PFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH-QL--TGEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLR 229 (255)
T ss_pred ccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee-eC--CCchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHH
Confidence 1234556789999999999999 987665553221 22 2345788899865 467777 6999999999999999888
Q ss_pred HHh
Q 018250 334 EIL 336 (359)
Q Consensus 334 ~~~ 336 (359)
+..
T Consensus 230 ~~~ 232 (255)
T PRK14103 230 EAY 232 (255)
T ss_pred HHC
Confidence 763
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-15 Score=138.00 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=155.4
Q ss_pred ccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCC
Q 018250 17 TCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPD 96 (359)
Q Consensus 17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~ 96 (359)
+..|++++..|.+....++..+ . .....+|+|+|||+|..+..++ +++ |.
T Consensus 6 ~~~Y~~~~~~~~~~~~~ll~~~----------~-----~~~~~~vLDiGcG~G~~~~~la--------~~~-------~~ 55 (258)
T PRK01683 6 PSLYLKFEDERTRPARDLLARV----------P-----LENPRYVVDLGCGPGNSTELLV--------ERW-------PA 55 (258)
T ss_pred HHHHHHHHHHhhcHHHHHHhhC----------C-----CcCCCEEEEEcccCCHHHHHHH--------HHC-------CC
Confidence 4679999998887765443322 1 1345799999999999988774 332 34
Q ss_pred ceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecC
Q 018250 97 FQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTR 176 (359)
Q Consensus 97 ~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~ 176 (359)
.+|+..|+...+....-+..+. --|.. +++. .+.|++++|+++|+.++||+.+
T Consensus 56 ~~v~gvD~s~~~i~~a~~~~~~-~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~~d---------------------- 108 (258)
T PRK01683 56 ARITGIDSSPAMLAEARSRLPD-CQFVE---ADIA-SWQPPQALDLIFANASLQWLPD---------------------- 108 (258)
T ss_pred CEEEEEECCHHHHHHHHHhCCC-CeEEE---Cchh-ccCCCCCccEEEEccChhhCCC----------------------
Confidence 6899999987665544433331 11222 3443 3457789999999999999643
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccC
Q 018250 177 FMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTF 256 (359)
Q Consensus 177 ~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f 256 (359)
...+|+.-.+.|+|||++++++.+.... ..+. .++++....--...-...-
T Consensus 109 ----------------~~~~l~~~~~~LkpgG~~~~~~~~~~~~---------~~~~----~~~~~~~~~~w~~~~~~~~ 159 (258)
T PRK01683 109 ----------------HLELFPRLVSLLAPGGVLAVQMPDNLDE---------PSHV----LMREVAENGPWEQNLPDRG 159 (258)
T ss_pred ----------------HHHHHHHHHHhcCCCcEEEEECCCCCCC---------HHHH----HHHHHHccCchHHHhcccc
Confidence 2236777788999999999986442211 0111 1222221110000000011
Q ss_pred CccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHH-hhhhhhhccCHHHHHHHHHHHHHHHHHH
Q 018250 257 NVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAV-LEGLIGKHFGEELLENIFNHINTKEAEI 335 (359)
Q Consensus 257 ~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~-~~~~l~~~~~e~i~delf~r~~~~~~~~ 335 (359)
..+.++++.+++...+...| +.++..+.. ....+ .+++.+.+|+++. +.+++. +++++..++|.++|.+.+++.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~f~~~~~~~~~~~ 234 (258)
T PRK01683 160 ARRAPLPPPHAYYDALAPAA-CRVDIWHTT-YYHPM--PSAQAIVEWVKGTGLRPFLD-PLTESEQAAFLAAYLARIAEA 234 (258)
T ss_pred ccCcCCCCHHHHHHHHHhCC-Cceeeeeee-eeeec--CCchhhhhhhhhccHHHHHh-hCCHHHHHHHHHHHHHHHHHH
Confidence 12347789999999999999 776554443 22334 3467899999974 577775 699999999999999999876
Q ss_pred hh-hhhc-CCcceEEEEEEEEe
Q 018250 336 LS-IHNG-KLHKEIEVFVVLKR 355 (359)
Q Consensus 336 ~~-~~~~-~~~~~~~~~~~l~r 355 (359)
.. .-.. -...+.-++++-+|
T Consensus 235 ~~~~~~g~~~~~~~~~~~~~~~ 256 (258)
T PRK01683 235 YPLQADGKVLLAFPRLFIVARR 256 (258)
T ss_pred CCCCCCCcEEcccceEEEEEEe
Confidence 32 1111 11234455666555
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=140.89 Aligned_cols=211 Identities=15% Similarity=0.168 Sum_probs=142.6
Q ss_pred CCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCC
Q 018250 15 DGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPV 94 (359)
Q Consensus 15 ~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~ 94 (359)
....+|++++.+|+.+...+...+. .....+|+|+|||+|.+|..+. +.
T Consensus 15 ~aa~~Y~~~~~~q~~~a~~l~~~l~---------------~~~~~~vLDiGcG~G~~~~~l~--------~~-------- 63 (251)
T PRK10258 15 RAAAHYEQHAELQRQSADALLAMLP---------------QRKFTHVLDAGCGPGWMSRYWR--------ER-------- 63 (251)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHhcC---------------ccCCCeEEEeeCCCCHHHHHHH--------Hc--------
Confidence 3456899999999998877665542 1235689999999998877652 21
Q ss_pred CCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceee
Q 018250 95 PDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKC 174 (359)
Q Consensus 95 p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~ 174 (359)
..+++..|+...+-...-+..+ ...|+. +++....+|++++|+|+|+.++||+.+
T Consensus 64 -~~~v~~~D~s~~~l~~a~~~~~-~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d-------------------- 118 (251)
T PRK10258 64 -GSQVTALDLSPPMLAQARQKDA-ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGN-------------------- 118 (251)
T ss_pred -CCeEEEEECCHHHHHHHHhhCC-CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCC--------------------
Confidence 2489999998765544333322 112333 466565689999999999999999653
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhc
Q 018250 175 TRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKAR 254 (359)
Q Consensus 175 ~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d 254 (359)
...+|+.-.+-|+|||++++++++.++ +..+.++|..+-
T Consensus 119 ------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~------------~~el~~~~~~~~----------- 157 (251)
T PRK10258 119 ------------------LSTALRELYRVVRPGGVVAFTTLVQGS------------LPELHQAWQAVD----------- 157 (251)
T ss_pred ------------------HHHHHHHHHHHcCCCeEEEEEeCCCCc------------hHHHHHHHHHhc-----------
Confidence 234666778999999999999998765 234555665431
Q ss_pred cCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHHhhhhh-----hhccCHHHHHHHHHHH
Q 018250 255 TFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAVLEGLI-----GKHFGEELLENIFNHI 328 (359)
Q Consensus 255 ~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~~~~~l-----~~~~~e~i~delf~r~ 328 (359)
......-+++.+|+...+...| +++ ..+.+ ...+ .++..+..++|....... ...++...+.++.+.|
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~--~~~f--~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (251)
T PRK10258 158 ERPHANRFLPPDAIEQALNGWR-YQH-HIQPI--TLWF--DDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAW 230 (251)
T ss_pred cCCccccCCCHHHHHHHHHhCC-cee-eeeEE--EEEC--CCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhc
Confidence 1122345789999999998777 654 33333 3335 357889999998665433 2346676666666655
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=127.30 Aligned_cols=218 Identities=18% Similarity=0.257 Sum_probs=150.0
Q ss_pred CccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCC
Q 018250 16 GTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVP 95 (359)
Q Consensus 16 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p 95 (359)
...+|++.+..|+.+...+.+.+... . ...+.+|+|+|||+|..+..+. +. .|
T Consensus 5 ~~~~y~~~~~~q~~~~~~l~~~~~~~-------~-----~~~~~~vLDlG~G~G~~~~~l~--------~~-------~~ 57 (240)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEK-------G-----IFIPASVLDIGCGTGYLTRALL--------KR-------FP 57 (240)
T ss_pred hhhchhHHHHHHHHHHHHHHHHhhhh-------c-----cCCCCeEEEECCCccHHHHHHH--------Hh-------CC
Confidence 45689999999999888877776531 1 1335789999999999888774 22 24
Q ss_pred CceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeec
Q 018250 96 DFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCT 175 (359)
Q Consensus 96 ~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~ 175 (359)
..+++..|+...+.+...+.++++-.++. +++.+..+|++++|+++|+.++||+..
T Consensus 58 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~--------------------- 113 (240)
T TIGR02072 58 QAEFIALDISAGMLAQAKTKLSENVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDD--------------------- 113 (240)
T ss_pred CCcEEEEeChHHHHHHHHHhcCCCCeEEe---cchhhCCCCCCceeEEEEhhhhhhccC---------------------
Confidence 56799999987666655555443212332 466677789999999999999999642
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018250 176 RFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKART 255 (359)
Q Consensus 176 ~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~ 255 (359)
...+|+...+-|+|||.+++..++.++ +..+...+..
T Consensus 114 -----------------~~~~l~~~~~~L~~~G~l~~~~~~~~~------------~~~~~~~~~~-------------- 150 (240)
T TIGR02072 114 -----------------LSQALSELARVLKPGGLLAFSTFGPGT------------LHELRQSFGQ-------------- 150 (240)
T ss_pred -----------------HHHHHHHHHHHcCCCcEEEEEeCCccC------------HHHHHHHHHH--------------
Confidence 334777889999999999999776543 1222223221
Q ss_pred CCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHHhh-hhhhhccCHHHHHHHHHHHHHHHH
Q 018250 256 FNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAVLE-GLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 256 f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~~~-~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
....+++.+++.+++... |....++....+..+ .++..+..+++.... ......++.+...++.+.|.+...
T Consensus 151 --~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 151 --HGLRYLSLDELKALLKNS--FELLTLEEELITLSF--DDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ 223 (240)
T ss_pred --hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC--CCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence 112568899999999876 877666654434444 356788888888554 333334778778888888766654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=113.78 Aligned_cols=223 Identities=16% Similarity=0.225 Sum_probs=147.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
..+.+|.|||||+|..|.+++ +++ |..++..-|-..-|.....+.+|+.+ |..|- ....-
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS~~Mla~Aa~rlp~~~-f~~aD----l~~w~ 88 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSSPAMLAKAAQRLPDAT-FEEAD----LRTWK 88 (257)
T ss_pred cccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCCHHHHHHHHHhCCCCc-eeccc----HhhcC
Confidence 457899999999999999985 564 67799999998888877777776422 22211 13446
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|+...|++||+.+||||.+-|. .|..--.+|.|||.|.+.++
T Consensus 89 p~~~~dllfaNAvlqWlpdH~~--------------------------------------ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPDHPE--------------------------------------LLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CCCccchhhhhhhhhhccccHH--------------------------------------HHHHHHHhhCCCceEEEECC
Confidence 8999999999999999765443 23344578999999999997
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCC-ccccCCCHHHHHHHHHhCCceeEeEEEEe-ecCCCCC
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFN-VPAYFPYVEELESLIQRNGHFAMERMQQL-DQPMRHK 293 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~-~P~y~ps~~E~~~~i~~~G~F~i~~le~~-~~~~~~~ 293 (359)
+.-++ .+ +.++. +.++++=- +.++.+.. .----+++.-|-+++...+ -+|+--++. .+++.
T Consensus 131 dN~de--ps-------H~~mr----~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~Y~h~l~-- 193 (257)
T COG4106 131 DNLDE--PS-------HRLMR----ETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTTYYHQLP-- 193 (257)
T ss_pred CccCc--hh-------HHHHH----HHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeeeccccCC--
Confidence 64432 11 23333 22222210 11111110 1123578899999998776 666555543 23322
Q ss_pred CCChhHHHHHHHH-HhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhh-h-cCCcceEEEEEEEEec
Q 018250 294 TFPAQFYLSHLRA-VLEGLIGKHFGEELLENIFNHINTKEAEILSIH-N-GKLHKEIEVFVVLKRI 356 (359)
Q Consensus 294 ~~~~~~v~~~iRa-~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~-~-~~~~~~~~~~~~l~r~ 356 (359)
+.+.+..|+++ .+.|++.. ++++-...|.++|..+++++.-.. + +-...+.-+|||-+|+
T Consensus 194 --~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~ 256 (257)
T COG4106 194 --GADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRG 256 (257)
T ss_pred --Cccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEecC
Confidence 35689999998 66799985 999999999999999998764331 1 1112356677777664
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-12 Score=116.56 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=113.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
...+|||+|||||-.|+.++ +.. ++.+|+..|..++|.+..-+...+ ...-+.-|-|++.+.+|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~--------k~~-------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA--------KSV-------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHH--------Hhc-------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 46999999999999999884 433 256999999999999887776654 11102223358989999
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++|+|++.+++.||++.+.+.. |+--++.|||||++++.=+
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~a--------------------------------------L~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKA--------------------------------------LKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHH--------------------------------------HHHHHHhhcCCeEEEEEEc
Confidence 99999999999999998876653 4557899999999999888
Q ss_pred cCCCCCCCCCcchhHHHHHHHH-HHHHHHHcCCCC--hhhhc-cCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGS-CLWDLAKMGVIS--EEKAR-TFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~-al~~lv~eGli~--~e~~d-~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
..++..+.... ....... ++--+. .+++ .+.+. -....--+|+.+++.+.+++.| |+...-+
T Consensus 158 ~~p~~~~~~~~----~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~~~ 223 (238)
T COG2226 158 SKPDNPVLRKA----YILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVRYE 223 (238)
T ss_pred CCCCchhhHHH----HHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEeeE
Confidence 88754222111 1111111 111110 1111 11111 0123346899999999999999 9865533
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-11 Score=111.33 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=102.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------Cc-ccccccCcc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RK-YYAAGVPGS 129 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~-~~~~~vpgs 129 (359)
...+|+|+|||+|..+..+. +++ .|..+|+..|+..++....-+..+. .. .|+. ++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la--------~~~------~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~---~d 135 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLS--------EKV------GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIE---GD 135 (261)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HHh------CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEE---cc
Confidence 35799999999999887663 332 2345899999998887665433221 11 1333 46
Q ss_pred cccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 130 FHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 130 fy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
..+..||++|+|++++++++||+.+ ...+|+.-++.|||||+
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVVD--------------------------------------RLKAMQEMYRVLKPGSR 177 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCcE
Confidence 6566689999999999999999642 23467778899999999
Q ss_pred eEEEeccCCCCCCCCCcchhHHHHH-HHHHHHHHH-HcCCCChhhhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 210 MVFSLITGPSGIPFADTVQGATYNF-LGSCLWDLA-KMGVISEEKART-FNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 210 lvl~~~g~~~~~~~~~~~~~~~~~~-l~~al~~lv-~eGli~~e~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
+++..++.++... ...+++. +...+.-+. .-|.- +.+.- ...--.+++.+|+.+.++++| |++.+...
T Consensus 178 l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~~ 248 (261)
T PLN02233 178 VSILDFNKSTQPF-----TTSMQEWMIDNVVVPVATGYGLA--KEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHYE 248 (261)
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHhhhhhHHHHHhCCh--HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEEE
Confidence 9999888765311 0111111 111111010 01211 11100 000013789999999999999 98765444
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-10 Score=109.59 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=99.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy 131 (359)
...+|+|+|||+|.++..+. +++ ..+|+..|+..++-...-+.... +-.|.. +++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La--------~~~--------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~---~D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLA--------RKY--------GANVKGITLSPVQAARANALAAAQGLSDKVSFQV---ADAL 178 (340)
T ss_pred CCCeEEEecCCCCHHHHHHH--------Hhc--------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---cCcc
Confidence 45789999999999998875 222 24788888877654433222111 112333 4666
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+..||++++|+|+|..++|++.+ ...+|+.-.+-|+|||+++
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d--------------------------------------~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPD--------------------------------------KRKFVQELARVAAPGGRII 220 (340)
T ss_pred cCCCCCCCccEEEECCchhccCC--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence 66789999999999999988532 2246777789999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+......+..+.... +...-...+..+.. .+.+| .+.+.+|+.+++++.| |+..+.+.+
T Consensus 221 i~~~~~~~~~~~~~~----l~~~~~~~~~~i~~----------~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~d~ 279 (340)
T PLN02244 221 IVTWCHRDLEPGETS----LKPDEQKLLDKICA----------AYYLP-AWCSTSDYVKLAESLG-LQDIKTEDW 279 (340)
T ss_pred EEEeccccccccccc----CCHHHHHHHHHHHh----------hccCC-CCCCHHHHHHHHHHCC-CCeeEeeeC
Confidence 988655432211100 00001111122111 12233 2358999999999999 998776654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-10 Score=104.83 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=116.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..++ +.+ ..+|+..|+..+.....-+..+.. --+..+.+++.+..+|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~~~~~a~~~~~~~-~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEKMVNIAKLRNSDK-NKIEFEANDILKKDFP 114 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHHHHHHHHHHcCcC-CceEEEECCcccCCCC
Confidence 45789999999999887664 221 358999999876655443333221 0122223577677789
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|+.++++++. .|...+|+.-++-|+|||+++++-..
T Consensus 115 ~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999888766431 14556788889999999999998765
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCC
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFP 296 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~ 296 (359)
..+... .-+.+...+. .. .+.+++.+++.++++++| |++...+.. .
T Consensus 159 ~~~~~~--------~~~~~~~~~~----~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~--~------- 204 (263)
T PTZ00098 159 ADKIEN--------WDEEFKAYIK----KR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDI--S------- 204 (263)
T ss_pred cccccC--------cHHHHHHHHH----hc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeC--c-------
Confidence 543211 0111111111 10 124579999999999999 998777653 1
Q ss_pred hhHHHHHHHHHhh------hhhhhccCHHHHHHHHHHHHHHHH
Q 018250 297 AQFYLSHLRAVLE------GLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 297 ~~~v~~~iRa~~~------~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
..+..++....+ .-+...++++..+.+-.-+...+.
T Consensus 205 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 205 -DYWLELLQVELKKLEEKKEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 122222222222 222234677666666666655443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=108.78 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=102.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +++ ..|..+++..|+..++....-+.+.. ...-+.-+.+++..-.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~--------~~~-----~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~ 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSAR--------RNI-----NQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC
Confidence 34689999999999888774 222 13567999999987665544443322 0111122335775544
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+| +.|+++|++++||++. .|...+|+.-.+.|+|||++++.-
T Consensus 120 ~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 IK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 55 5789999999999642 134467888899999999999986
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHH-cCCCChhhh----ccCCccccCCCHHHHHHHHHhCCcee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAK-MGVISEEKA----RTFNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~-eGli~~e~~----d~f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
..+.+... ....+.+.+..... .|. +++++ +.+.......|.+|+.+.++++| |.
T Consensus 162 ~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 162 KFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred cccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 54433211 12333334333333 343 44333 22333445679999999999999 75
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=112.08 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=116.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.+. +.+ ..+++..|+........-+.......-+.-+-+++....+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------ENF--------DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYP 329 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------Hhc--------CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCC
Confidence 35689999999999877663 221 35899999976544332222111110011122477777789
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|..+++|+.+ ...+|+.-++-|+|||+++++.+.
T Consensus 330 ~~~fD~I~s~~~l~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQD--------------------------------------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCEEEEEECCcccccCC--------------------------------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 999999999999999643 224677788999999999999887
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCC
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFP 296 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~ 296 (359)
+....+. ..+...+. ..| +..++.+++.++++++| |++..++...
T Consensus 372 ~~~~~~~---------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~~--------- 416 (475)
T PLN02336 372 RSPGTPS---------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDRT--------- 416 (475)
T ss_pred cCCCCCc---------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceeeeeecch---------
Confidence 6543211 11111111 112 25679999999999999 9988666541
Q ss_pred hhHHHHHHHHHhhhhh------hhccCHHHHHHHHHHHHHHHH
Q 018250 297 AQFYLSHLRAVLEGLI------GKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 297 ~~~v~~~iRa~~~~~l------~~~~~e~i~delf~r~~~~~~ 333 (359)
..+..++..+...+. ...++++..+.+...+.+.+.
T Consensus 417 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (475)
T PLN02336 417 -DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLV 458 (475)
T ss_pred -HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHh
Confidence 233333333333221 224677777766666666554
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-09 Score=95.49 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=127.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..++ +.+ .|..+++..|+........-+.... .-.|.. +++...
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a--------~~~------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~---~d~~~~ 81 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA--------RRV------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR---GDADGL 81 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------Hhc------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe---cccccC
Confidence 35789999999999888774 222 1345889999876554443333111 111222 355555
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.++++++|++++..++||+.+ +..+|+...+-|+|||.+++.
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred CCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCCcEEEEE
Confidence 578899999999999999653 234677788899999999988
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCC
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHK 293 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~ 293 (359)
...-+...... .....+..+...|.. . +. -..+..++...++++| |++..++.+......
T Consensus 124 ~~~~~~~~~~~--~~~~~~~~~~~~~~~---~----------~~---~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~- 183 (241)
T PRK08317 124 DTDWDTLVWHS--GDRALMRKILNFWSD---H----------FA---DPWLGRRLPGLFREAG-LTDIEVEPYTLIETD- 183 (241)
T ss_pred ecCCCceeecC--CChHHHHHHHHHHHh---c----------CC---CCcHHHHHHHHHHHcC-CCceeEEEEEEeccC-
Confidence 75322210000 011122222222221 1 11 1234568999999999 998888776432211
Q ss_pred CCChhHHHHHHHHHhhhhh-hhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEecc
Q 018250 294 TFPAQFYLSHLRAVLEGLI-GKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRIS 357 (359)
Q Consensus 294 ~~~~~~v~~~iRa~~~~~l-~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 357 (359)
..+......+......+. ...+.++-++++++.+++.... ...+-+..++++..||+
T Consensus 184 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~kp 241 (241)
T PRK08317 184 -LKEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLARA------GEFFFSVTGFLVVGRKP 241 (241)
T ss_pred -cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc------CCEEEEEEEEEEEEeCC
Confidence 122222233332222222 2235667778888877765431 12245677788877764
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=107.43 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=101.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..+..+. +.+ .|..+++..|+..+.....-..+..... -+.-+.+++....+|
T Consensus 46 ~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALA--------EAV------GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred CCEEEEeCCCcCHHHHHHH--------HHh------CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 4799999999999888774 332 2446899999977654433322221000 112233466555678
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++||++. +..+|+.-.+-|+|||++++.-.+
T Consensus 112 ~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPD--------------------------------------YMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred CCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 999999999999999643 223666778899999999987766
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.++....... ....+..+--.+..+...+....... ......+|+.+|+++.++++| |++.+++.+
T Consensus 154 ~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 154 QPTIPGFKQL-YFFYFKYIMPLFGKLFAKSYKEYSWL--QESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred CCCChHHHHH-HHHHHcChhHHhhHHhcCCHHHHHHH--HHHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 5442110000 00000000011111111111000000 011236899999999999999 998888776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=111.24 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=96.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh----CCC-CcccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT----LPP-RKYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~----l~~-~~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..++.++ +.. + -+|+.-|.....+. -++. ... ..+ .-+++++.+
T Consensus 123 g~~VLDIGCG~G~~~~~la--------~~g-------~-~~V~GiD~S~~~l~-q~~a~~~~~~~~~~i--~~~~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRML--------GAG-------A-KLVVGIDPSQLFLC-QFEAVRKLLGNDQRA--HLLPLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHHH--------HcC-------C-CEEEEEcCCHHHHH-HHHHHHHhcCCCCCe--EEEeCCHHH
Confidence 4689999999999998774 221 2 25899996654432 2221 111 111 123345544
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..+ ++++|+|+|..++||.. |...+|+.-++.|+|||.+++
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~--------------------------------------dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRR--------------------------------------SPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CCC-cCCcCEEEECChhhccC--------------------------------------CHHHHHHHHHHhcCCCcEEEE
Confidence 445 78999999999999854 233467788899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
..+..+..... .+...+.+..+...++.||.+++..+++++| |++.++....
T Consensus 225 ~~~~i~~~~~~----------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~~ 276 (322)
T PRK15068 225 ETLVIDGDENT----------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDVS 276 (322)
T ss_pred EEEEecCCCcc----------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeCC
Confidence 87644331110 0111122233444567899999999999999 9988887653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-10 Score=97.98 Aligned_cols=138 Identities=20% Similarity=0.255 Sum_probs=91.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccc--cC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFH--GR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy--~~ 133 (359)
....+|+|+|||+|.++..+. +. ..+++..|....+... ....+..|. ..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR---------GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP 72 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT---------TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh---------CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence 456899999999998877662 22 1389999987543222 011111222 33
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+|+|+.+|||+. |+..+|+.-.+-|+|||+++++
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~--------------------------------------d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLP--------------------------------------DPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSS--------------------------------------HHHHHHHHHHHCEEEEEEEEEE
T ss_pred hccccchhhHhhHHHHhhcc--------------------------------------cHHHHHHHHHHhcCCCCEEEEE
Confidence 36899999999999999965 3445788889999999999999
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
.+.+... .. ..+... ...... .--..+.+.++++.++++.| |+|.+
T Consensus 115 ~~~~~~~-----------~~---~~~~~~---~~~~~~-----~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 115 DPNRDDP-----------SP---RSFLKW---RYDRPY-----GGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEBTTSH-----------HH---HHHHHC---CGTCHH-----TTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EcCCcch-----------hh---hHHHhc---CCcCcc-----CceeccCCHHHHHHHHHHCC-CEEEE
Confidence 9877531 00 011110 111110 01126669999999999999 99854
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=108.69 Aligned_cols=167 Identities=21% Similarity=0.249 Sum_probs=72.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||||..|+.++ ++. .|..+|+..|+..++....-+.+.. .. -|+. |+..+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~--------~~~------~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~---~da~~ 109 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA--------RRV------GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ---GDAED 109 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG--------GGS------S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE----BTTB
T ss_pred CCCEEEEeCCChHHHHHHHH--------HHC------CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE---cCHHH
Confidence 45799999999999998873 322 2456999999999887766554432 12 2444 57777
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..||++|+|.+++++.+|-+.+ ....|+.-.+.|||||++++
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d--------------------------------------~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPD--------------------------------------RERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SS--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCCCceeEEEHHhhHHhhCC--------------------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 7899999999999999998653 22356667899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChh--hhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEE--KART-FNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e--~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.-++++.... ...++...-..+.=++ -.+++.+ .++- ...-..||+.+|+.+.++++| |+..+.+.
T Consensus 152 le~~~p~~~~-----~~~~~~~y~~~ilP~~-g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~~ 220 (233)
T PF01209_consen 152 LEFSKPRNPL-----LRALYKFYFKYILPLI-GRLLSGDREAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYRP 220 (233)
T ss_dssp EEEEB-SSHH-----HHHHHHH------------------------------------------------------
T ss_pred eeccCCCCch-----hhceeeeeeccccccc-ccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 8888876311 1111111111000011 1223322 1111 122236789999999999999 98654443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=102.26 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=99.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|.+++.+. +.. ..|..+++..|+...+-...-+.+.. ...-+.-+.+++.+-.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~--------~~~-----~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVR--------RNI-----HHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 35789999999999988763 221 13567999999987665554443321 0001112234555443
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++ ..|+++|+.++||++. . +...+|+.-++-|+|||.|+++-
T Consensus 123 ~~--~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 123 IE--NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CC--CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 44 5899999999999752 1 23346777889999999999985
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhcc----CCccccCCCHHHHHHHHHhCCcee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKART----FNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~----f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
.-...... ..+.+...|..+....-.+++++.. ...-...-|.++..++++++| |+
T Consensus 165 ~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 165 KFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred ecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 33322111 1233444555555444445544432 222222248999999999999 53
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-10 Score=88.36 Aligned_cols=94 Identities=26% Similarity=0.322 Sum_probs=69.1
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-ccccccCcccccCCCCCCce
Q 018250 62 ADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-YYAAGVPGSFHGRLFPKSTL 140 (359)
Q Consensus 62 aDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-~~~~~vpgsfy~~l~p~~s~ 140 (359)
||+|||+|.++..+. ++ +...++..|.....-...-+...... -+.. +++....||++|+
T Consensus 1 LdiG~G~G~~~~~l~--------~~--------~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA--------KR--------GGASVTGIDISEEMLEQARKRLKNEGVSFRQ---GDAEDLPFPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHH--------HT--------TTCEEEEEES-HHHHHHHHHHTTTSTEEEEE---SBTTSSSS-TT-E
T ss_pred CEecCcCCHHHHHHH--------hc--------cCCEEEEEeCCHHHHHHHHhcccccCchhee---ehHHhCccccccc
Confidence 799999999999885 22 24689999998866655555554322 1333 4777788999999
Q ss_pred eEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 141 HVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 141 d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
|+++|+.++||+. |...+|+.-++-|||||++++
T Consensus 62 D~v~~~~~~~~~~--------------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 62 DVVFSNSVLHHLE--------------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEESHGGGSS--------------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccceeecc--------------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999971 455688889999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=104.73 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=99.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..+..+. + +..+|+.-|+.........+.... .. .|.. +++.+
T Consensus 132 g~~ILDIGCG~G~~s~~La--------~---------~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~---~dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLA--------R---------MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLC---TTAEK 191 (322)
T ss_pred CCEEEEeeCCCCHHHHHHH--------H---------cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEe---cCHHH
Confidence 4699999999999887663 1 135899999987665544332211 11 1232 46655
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..++++++|+|+|..+|||+.+. ..||+.-++-|||||++++
T Consensus 192 l~~~~~~FD~Vi~~~vLeHv~d~--------------------------------------~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 192 LADEGRKFDAVLSLEVIEHVANP--------------------------------------AEFCKSLSALTIPNGATVL 233 (322)
T ss_pred hhhccCCCCEEEEhhHHHhcCCH--------------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 55778999999999999996642 2478888899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+++.+... .++..+.. .+.+. +.+.. -.+.| .+.+.+|+..++++.| |++..+.-+
T Consensus 234 st~nr~~~---------~~~~~i~~--~eyi~-~~lp~-----gth~~~~f~tp~eL~~lL~~aG-f~i~~~~G~ 290 (322)
T PLN02396 234 STINRTMR---------AYASTIVG--AEYIL-RWLPK-----GTHQWSSFVTPEELSMILQRAS-VDVKEMAGF 290 (322)
T ss_pred EECCcCHH---------HHHHhhhh--HHHHH-hcCCC-----CCcCccCCCCHHHHHHHHHHcC-CeEEEEeee
Confidence 98755421 01111100 01111 11110 11222 4789999999999999 999877654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=103.90 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=100.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh----CCC-CcccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT----LPP-RKYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~----l~~-~~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..+..++ .. .+ -.|+.-|....+..+ |+. ... ..+. -.++++.
T Consensus 122 g~~VLDvGCG~G~~~~~~~--------~~-------g~-~~v~GiDpS~~ml~q-~~~~~~~~~~~~~v~--~~~~~ie- 181 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRML--------GH-------GA-KSLVGIDPTVLFLCQ-FEAVRKLLDNDKRAI--LEPLGIE- 181 (314)
T ss_pred CCEEEEeccCCcHHHHHHH--------Hc-------CC-CEEEEEcCCHHHHHH-HHHHHHHhccCCCeE--EEECCHH-
Confidence 4699999999999887663 21 11 267888876655433 221 111 1111 1223442
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+-+.+++|+|+|+.+|||+.. ...+|+.-++-|+|||.|++
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~d--------------------------------------p~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKS--------------------------------------PLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCC--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence 3333468999999999999542 12367788999999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCC
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRH 292 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~ 292 (359)
.+...+..... + +...+.+..+...++.||.+++..+++++| |+..++......+..
T Consensus 224 etl~i~g~~~~--------------~--------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~~~tt~~ 280 (314)
T TIGR00452 224 ETLVIDGDLNT--------------V--------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDVLKTTPE 280 (314)
T ss_pred EEEEecCcccc--------------c--------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEeccCCCHH
Confidence 87643321000 0 011111223445567899999999999999 998877765432222
Q ss_pred CCCChhHHHHHHH
Q 018250 293 KTFPAQFYLSHLR 305 (359)
Q Consensus 293 ~~~~~~~v~~~iR 305 (359)
.+..+.|++
T Consensus 281 ----eqr~t~w~~ 289 (314)
T TIGR00452 281 ----EQRKTDWIL 289 (314)
T ss_pred ----Hhhhhhhhh
Confidence 345666765
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-09 Score=99.35 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=99.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
.+.+|+|+|||+|..+..++ +. ..+|+..|+...+-...-+.... .. .++. +++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la--------~~---------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~---~d~~ 103 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA--------EL---------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH---CAAQ 103 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH--------Hc---------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEE---cCHH
Confidence 45799999999999988874 21 24789999987665544333221 11 1333 3443
Q ss_pred cCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+.. ++++++|++++..++||+.+.+ .+|+.-++-|+|||++
T Consensus 104 ~l~~~~~~~fD~V~~~~vl~~~~~~~--------------------------------------~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 104 DIAQHLETPVDLILFHAVLEWVADPK--------------------------------------SVLQTLWSVLRPGGAL 145 (255)
T ss_pred HHhhhcCCCCCEEEehhHHHhhCCHH--------------------------------------HHHHHHHHHcCCCeEE
Confidence 332 5678999999999999975421 2455667899999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
++.+...... .+-..+..-+. .+..|+...+.. ...|.+..+.+++.+++++.| |++....-+.
T Consensus 146 ~i~~~n~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi~ 209 (255)
T PRK11036 146 SLMFYNANGL---------LMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTGVR 209 (255)
T ss_pred EEEEECccHH---------HHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeeeEE
Confidence 9887654321 00011111111 122333211111 123566789999999999999 9997666543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.1e-09 Score=94.50 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=92.3
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCCCC
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~p~ 137 (359)
+|+|+|||+|..+..++ +.+ |..+++..|+..+.....-+.+... .--+.-+.+++...++|
T Consensus 2 ~vLDiGcG~G~~~~~la--------~~~-------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~- 65 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA--------ERH-------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP- 65 (224)
T ss_pred eEEEECCCCCHHHHHHH--------HHC-------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-
Confidence 69999999999887664 332 3457888888665544333332210 00011112344334444
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|+|+|..++|++. |+..+|+.-++-|+|||++++.-+..
T Consensus 66 ~~fD~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 66 DTYDLVFGFEVIHHIK--------------------------------------DKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred CCCCEeehHHHHHhCC--------------------------------------CHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 5899999999999953 33457888899999999999886533
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+.... . ..-..+.|+++.+|+...+++.| |++...+.+
T Consensus 108 ~~~~~-------------------------~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~ 145 (224)
T smart00828 108 NLLSA-------------------------I-----EHEETTSYLVTREEWAELLARNN-LRVVEGVDA 145 (224)
T ss_pred ccCcc-------------------------c-----cccccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence 21100 0 00112346899999999999999 999887776
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=99.90 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=95.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.++ +.. +..+++..|+..++....-+..+...+ .-+.++..+..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La--------~~~-------~~~~VtgVD~S~~mL~~A~~k~~~~~i--~~i~gD~e~lp~~ 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQSPHQLAKAKQKEPLKEC--KIIEGDAEDLPFP 175 (340)
T ss_pred CCCEEEEEecCCcHHHHHHH--------HHC-------CCCEEEEEECCHHHHHHHHHhhhccCC--eEEeccHHhCCCC
Confidence 35799999999999888774 222 235899999987665544333221111 1244677666788
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+++|+.++|++.+. ...|+.-.+-|+|||++++.-..
T Consensus 176 ~~sFDvVIs~~~L~~~~d~--------------------------------------~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDP--------------------------------------QRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCceeEEEEcChhhhCCCH--------------------------------------HHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999999999985421 13566778999999999876332
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+ .+ +...+.++ -..+++.+|+.+.+++.| |+..+++..
T Consensus 218 ~p~-----------~~--~~r~~~~~----------------~~~~~t~eEl~~lL~~aG-F~~V~i~~i 257 (340)
T PLN02490 218 HPT-----------FW--LSRFFADV----------------WMLFPKEEEYIEWFTKAG-FKDVKLKRI 257 (340)
T ss_pred Ccc-----------hh--HHHHhhhh----------------hccCCCHHHHHHHHHHCC-CeEEEEEEc
Confidence 111 00 01001110 013589999999999999 998877765
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=95.01 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=95.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ +.+ ..+|+..|+........-+...... +....+++ ..+ +
T Consensus 168 g~rVLDIGcG~G~~a~~la--------~~~--------g~~V~giDlS~~~l~~A~~~~~~l~--v~~~~~D~-~~l--~ 226 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAA--------EHY--------GVSVVGVTISAEQQKLAQERCAGLP--VEIRLQDY-RDL--N 226 (383)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHC--------CCEEEEEeCCHHHHHHHHHHhccCe--EEEEECch-hhc--C
Confidence 4699999999999888774 222 2478888988766554433332111 11112233 222 5
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|.|+|...++|+.. +++..+|+.-.+-|+|||++++..++.
T Consensus 227 ~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 78999999999988521 245567888899999999999998876
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+....... .-++.+.+|. +.|+.+++....+ .| |++..++.+
T Consensus 271 ~~~~~~~~-------------------------~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~ 313 (383)
T PRK11705 271 NKTDTNVD-------------------------PWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNF 313 (383)
T ss_pred CCCCCCCC-------------------------CCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecC
Confidence 64211100 1112344553 6899999999877 46 998888765
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=92.96 Aligned_cols=164 Identities=14% Similarity=0.097 Sum_probs=95.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRL 134 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l 134 (359)
.+..+|+|+|||+|.++..+.. ..+.. .|..+++..|+..++....-+....... +..+.. ....
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~--------~~~~~---g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLAR--------WARRD---GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELV 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHH--------HHHhC---CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---cccc
Confidence 3467999999999998887642 22111 2457999999988765544333221111 222211 1122
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++|+.+|||+.+. ++..+|+.-++-++ |.+++.-
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~------------------------------------~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDA------------------------------------EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ccCCCccEEEECCeeecCChH------------------------------------HHHHHHHHHHHhcC--eeEEEec
Confidence 478999999999999997531 23346666666665 5566665
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMG-VISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eG-li~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
+.++.. .+.... ........| .+.. |....-.-++|.+|+.+.+++ | |++.+...|.
T Consensus 167 l~~~~~----------~~~~~~-~~~~~~~~~~~~~~---d~~~s~~~~~~~~el~~ll~~-G-f~~~~~~~~~ 224 (232)
T PRK06202 167 LIRSRL----------AYALFW-AGTRLLSRSSFVHT---DGLLSVRRSYTPAELAALAPQ-G-WRVERQWPFR 224 (232)
T ss_pred cccCHH----------HHHHHH-HHHHHhccCceeec---cchHHHHhhcCHHHHHHHhhC-C-CeEEecccee
Confidence 555421 111111 111111112 2221 222333468999999999998 8 9998877763
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=90.65 Aligned_cols=196 Identities=19% Similarity=0.275 Sum_probs=123.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
.-.++|||||-|+.+..+...-| -+++..|....+-.+-...-.+ .+||+.- .+.|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~D-----EE~L 131 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGD-----EEFL 131 (325)
T ss_pred CcceeecccchhhhhHHHHhcch----------------hheeeeecchHHHHHhhccCCCceEEEEEecc-----hhcc
Confidence 56789999999998887742211 2556667665444332222111 2344332 2444
Q ss_pred -CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 -FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 -~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
|-++|+|++.||.++||..++|... . .....|||.|.|+.+
T Consensus 132 df~ens~DLiisSlslHW~NdLPg~m-------------------------------------~-~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 132 DFKENSVDLIISSLSLHWTNDLPGSM-------------------------------------I-QCKLALKPDGLFIAS 173 (325)
T ss_pred cccccchhhhhhhhhhhhhccCchHH-------------------------------------H-HHHHhcCCCccchhH
Confidence 8999999999999999999998642 2 357889999999999
Q ss_pred eccCCCCCCCCCcchhHHHH-HHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCC
Q 018250 214 LITGPSGIPFADTVQGATYN-FLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRH 292 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~-~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~ 292 (359)
++|-++ +++ -+.-.|.+|-.+|-|++. ..| |-...++-.++.++| |....+.+-+....+
T Consensus 174 mlggdT-----------LyELR~slqLAelER~GGiSph-----iSP--f~qvrDiG~LL~rAG-F~m~tvDtDEi~v~Y 234 (325)
T KOG2940|consen 174 MLGGDT-----------LYELRCSLQLAELEREGGISPH-----ISP--FTQVRDIGNLLTRAG-FSMLTVDTDEIVVGY 234 (325)
T ss_pred Hhcccc-----------HHHHHHHhhHHHHHhccCCCCC-----cCh--hhhhhhhhhHHhhcC-cccceecccceeecC
Confidence 998776 222 233456688888877632 111 235678888999999 988777765444334
Q ss_pred CCCChhHHHHHHHHHhhhhh--h--hccCHHHHHHHHHHHHHHHH
Q 018250 293 KTFPAQFYLSHLRAVLEGLI--G--KHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 293 ~~~~~~~v~~~iRa~~~~~l--~--~~~~e~i~delf~r~~~~~~ 333 (359)
. ..-.+...+++..|.-- . .++..+.+-.--.-|.+.++
T Consensus 235 p--~mfeLm~dLq~MgEsn~~~~Rn~~l~Ret~vAaaAiY~smya 277 (325)
T KOG2940|consen 235 P--RMFELMEDLQGMGESNAALNRNAILNRETMVAAAAIYQSMYA 277 (325)
T ss_pred c--hHHHHHHHHHhhcccchhhccCccccHHHHHHHHHHHHHHhc
Confidence 1 12355666777665322 1 34555554444444544444
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=86.13 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=98.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +.++ ...+++..|+........-+..+. +--+. .+++.+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~--------~~~~------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~---~~d~~~~~ 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA--------KSAP------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFI---QADAEALP 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH--------HhcC------CCceEEEEECCHHHHHHHHHHhccCCCceEE---ecchhcCC
Confidence 45799999999999888774 2221 125788889865443333222221 11122 24666666
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++..+|+..+ ...+|+...+.|+|||++++.-
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 78889999999999998543 2346778889999999999866
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHH---cCCCChhhhccCC----ccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAK---MGVISEEKARTFN----VPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~---eGli~~e~~d~f~----~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.-..... .+..+.+.+..... .+..... .+.+. ....+++.+|+..++++.| |++...+...
T Consensus 144 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 212 (223)
T TIGR01934 144 FSKPANA---------LLKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSLT 212 (223)
T ss_pred ecCCCch---------hhHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeeee
Confidence 5333211 11222222221110 0000000 01110 1123679999999999999 9988777653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-09 Score=96.83 Aligned_cols=173 Identities=17% Similarity=0.167 Sum_probs=106.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccc----cccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYA----AGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~----~~vpgsfy 131 (359)
....+++|++||||-.|+.++..+-+ +. ...+-.|+..|+-.++.+---+.-..+.++. .-+.|+..
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s----~~-----~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKS----QF-----GDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhcc----cc-----CCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 44699999999999999998643221 11 1234689999999888665433221122222 12346888
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
...||++|+|...+++.+.-+.+++++ |+--++.|||||+|.
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~--------------------------------------l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKA--------------------------------------LREAYRVLKPGGRFS 211 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHH--------------------------------------HHHHHHhcCCCcEEE
Confidence 888999999999999998876655443 233468999999999
Q ss_pred EEeccCCCCCCCCCcchhHH---HHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 212 FSLITGPSGIPFADTVQGAT---YNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~---~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
+.-+..-+..+......... .-.+.+.+....+.+..=-+ +.+ -||+.+|+...|+++| |....
T Consensus 212 cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLve---SI~---rfp~qe~f~~miedaG-F~~~~ 278 (296)
T KOG1540|consen 212 CLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVE---SIR---RFPPQEEFASMIEDAG-FSSVN 278 (296)
T ss_pred EEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHh---hhh---cCCCHHHHHHHHHHcC-Ccccc
Confidence 88887655222110000011 11222222222222211111 111 5799999999999999 88765
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.4e-08 Score=90.94 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=97.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +..+. ....+++..|+..+.....-+..+. --|.. ++..+..|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~--------~~~~~----~~~~~v~giD~s~~~l~~A~~~~~~-~~~~~---~d~~~lp~~ 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALA--------DALPE----ITTMQLFGLDISKVAIKYAAKRYPQ-VTFCV---ASSHRLPFA 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHH--------Hhccc----ccCCeEEEECCCHHHHHHHHHhCCC-CeEEE---eecccCCCc
Confidence 35689999999999988874 22211 1124789999988766554443332 11222 355566689
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|.++ |.. ++.-++.|+|||+|++..++
T Consensus 149 ~~sfD~I~~~~~-------~~~--------------------------------------~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 149 DQSLDAIIRIYA-------PCK--------------------------------------AEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CCceeEEEEecC-------CCC--------------------------------------HHHHHhhccCCCEEEEEeCC
Confidence 999999998654 211 11235689999999998876
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCC
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFP 296 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~ 296 (359)
... +++ +++++.+ .|...+...+ ...| |++.+.+.+.....+ +
T Consensus 184 ~~~-----------l~e-----l~~~~~~------------~~~~~~~~~~-----~~~g-F~~~~~~~~~~~~~l---~ 226 (272)
T PRK11088 184 PRH-----------LFE-----LKGLIYD------------EVRLHAPEAE-----QLEG-FELQHSERLAYPMRL---T 226 (272)
T ss_pred Ccc-----------hHH-----HHHHhcc------------cccccccchh-----hccC-CCeeeEEEEEEEEEe---C
Confidence 543 222 2222211 1112222222 1256 999888887666555 3
Q ss_pred hhHHHHHHHHHhhhhhhhccCHHHHHH
Q 018250 297 AQFYLSHLRAVLEGLIGKHFGEELLEN 323 (359)
Q Consensus 297 ~~~v~~~iRa~~~~~l~~~~~e~i~de 323 (359)
+.....|+++ .|+.. +.+++..++
T Consensus 227 ~~~~~~ll~m--tP~~~-~~~~e~~~~ 250 (272)
T PRK11088 227 GSEAVALLQM--TPFAW-KATPEVKQQ 250 (272)
T ss_pred HHHHHHHHcC--Ccccc-CCCHHHHHH
Confidence 3444457774 25554 466666554
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-08 Score=90.72 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=99.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..+..++ +.++ +..+++..|+..+.....-+....... -+.-+.+++.+..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~--------~~~~------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALA--------KAVG------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred CCeEEEeCCCCCHHHHHHH--------HHcC------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 4799999999999888774 2221 246899999977554443333221000 01112246666667
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++++|++++++++|++++. ..+|+...+-|+|||++++...
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDI--------------------------------------DKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHhccCCcEEEEEEe
Confidence 78899999999999986542 2366677889999999988766
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHH--------HHHcCCCChhhhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWD--------LAKMGVISEEKART-FNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~--------lv~eGli~~e~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+.... +..+.+.+.. ...... +..+. ...--.+++.+++..+++++| |++.+...+
T Consensus 160 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 226 (239)
T PRK00216 160 SKPTNPP---------LKKAYDFYLFKVLPLIGKLISKNA---EAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNL 226 (239)
T ss_pred cCCCchH---------HHHHHHHHHHhhhHHHHHHHcCCc---HHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeee
Confidence 5443210 1111111111 111100 00000 001124679999999999999 998777765
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=90.01 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=86.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|.+++.++ ++ ..+|+.-|+..+.-..+-+....... .+..+.+++....+
T Consensus 31 ~~~vLDiGcG~G~~a~~La--------~~---------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~- 92 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA--------AN---------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF- 92 (197)
T ss_pred CCcEEEECCCCCHHHHHHH--------HC---------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-
Confidence 4789999999999998885 21 24788889976543332222211111 12222335533334
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE-ec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS-LI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~-~~ 215 (359)
++++|+|+|+.++||+.. .|...+++.-++-|+|||++++. .+
T Consensus 93 ~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred CCCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 467999999999999642 14556888889999999996554 43
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
...+. +. . .-|.+..+.+|+.+.++ | |++.+.+.
T Consensus 137 ~~~~~-~~-------------------------------~-~~~~~~~~~~el~~~~~--~-~~~~~~~~ 170 (197)
T PRK11207 137 DTADY-PC-------------------------------T-VGFPFAFKEGELRRYYE--G-WEMVKYNE 170 (197)
T ss_pred cCCCC-CC-------------------------------C-CCCCCccCHHHHHHHhC--C-CeEEEeeC
Confidence 32211 00 0 01235678999998887 6 98876643
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-08 Score=92.07 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=94.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..++.++ +.. .+..+|+..|+..+.....-+......+ -+.-+.+++....+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a--------~~~------g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAA--------RRV------GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 142 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC
Confidence 35699999999998877653 222 1345899999977665544332211000 11122356655567
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+++|+.++||.... ...|+.-.+-|+|||++++.-+
T Consensus 143 ~~~~fD~Vi~~~v~~~~~d~--------------------------------------~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ADNSVDVIISNCVINLSPDK--------------------------------------ERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCceeEEEEcCcccCCCCH--------------------------------------HHHHHHHHHHcCCCcEEEEEEe
Confidence 89999999999999995321 1245556788999999999765
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
...... ...+...+. +. .|. .....+.+|+.+++++.| |...++...
T Consensus 185 ~~~~~~----------~~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~~~ 231 (272)
T PRK11873 185 VLRGEL----------PEEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVDITIQPK 231 (272)
T ss_pred eccCCC----------CHHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCceEEEec
Confidence 332211 112222222 11 011 113457899999999999 987766543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-08 Score=88.31 Aligned_cols=139 Identities=13% Similarity=0.200 Sum_probs=85.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
+.+|+|+|||+|.+++.++ ++ ..+|+.-|+..+.-..+-+.......=+....++.....+ +
T Consensus 31 ~~~vLDiGcG~G~~a~~la--------~~---------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~ 92 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS--------LA---------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-N 92 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH--------HC---------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-c
Confidence 4699999999999999885 21 2488999998755544322221111001111122222123 4
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|+++|+.++||++. .++..+++..++-|+|||++++.....
T Consensus 93 ~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred CCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 68999999999999642 145567888899999999966544322
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.+..+. | ..+.|-.+.+|+++.+. + |++.+.+.
T Consensus 137 ~~~~~~----------------------~----------~~~~~~~~~~el~~~f~--~-~~~~~~~e 169 (195)
T TIGR00477 137 TADYPC----------------------H----------MPFSFTFKEDELRQYYA--D-WELLKYNE 169 (195)
T ss_pred cCCCCC----------------------C----------CCcCccCCHHHHHHHhC--C-CeEEEeec
Confidence 211000 0 01236688999998885 4 88876664
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.7e-06 Score=80.29 Aligned_cols=167 Identities=19% Similarity=0.320 Sum_probs=90.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsfy~ 132 (359)
-.+|||+|||-|..++.+++ ++ ..+|....|..+-..-.-+.+.. ..+ ... .+|.
T Consensus 63 G~~vLDiGcGwG~~~~~~a~--------~~--------g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~---~D~~- 122 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAE--------RY--------GCHVTGITLSEEQAEYARERIREAGLEDRVEVRL---QDYR- 122 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHH--------HH----------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE---S-GG-
T ss_pred CCEEEEeCCCccHHHHHHHH--------Hc--------CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---eecc-
Confidence 47999999999999998863 32 13455555544333222111111 111 111 1332
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
. ++. ++|-|+|.-++.-+. .+++..|++.-++-|+|||++++
T Consensus 123 ~-~~~-~fD~IvSi~~~Ehvg------------------------------------~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 123 D-LPG-KFDRIVSIEMFEHVG------------------------------------RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp G-----S-SEEEEESEGGGTC------------------------------------GGGHHHHHHHHHHHSETTEEEEE
T ss_pred c-cCC-CCCEEEEEechhhcC------------------------------------hhHHHHHHHHHHHhcCCCcEEEE
Confidence 2 222 899999976665531 23677799999999999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEeecCCC
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQLDQPMR 291 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~ 291 (359)
..++..+..... +.-.+.+-+..+.+|- +.|+.+|+...++..| |+|...+.+
T Consensus 165 q~i~~~~~~~~~--------------------~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~-l~v~~~~~~----- 218 (273)
T PF02353_consen 165 QTITHRDPPYHA--------------------ERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG-LEVEDVENL----- 218 (273)
T ss_dssp EEEEE--HHHHH--------------------CTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT--EEEEEEE------
T ss_pred Eecccccccchh--------------------hcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-EEEEEEEEc-----
Confidence 988766521000 0000000111222333 6789999999999889 999888776
Q ss_pred CCCCChhHHHHHHHHHhhhhhh
Q 018250 292 HKTFPAQFYLSHLRAVLEGLIG 313 (359)
Q Consensus 292 ~~~~~~~~v~~~iRa~~~~~l~ 313 (359)
+..++..++.|.+.+.+
T Consensus 219 -----~~hY~~Tl~~W~~~f~~ 235 (273)
T PF02353_consen 219 -----GRHYARTLRAWRENFDA 235 (273)
T ss_dssp -----HHHHHHHHHHHHHHHHH
T ss_pred -----CcCHHHHHHHHHHHHHH
Confidence 34566666666666655
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-08 Score=92.17 Aligned_cols=137 Identities=16% Similarity=0.237 Sum_probs=86.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKS 138 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~ 138 (359)
.+|+|+|||+|.+++.+++ . ..+|+.-|.....-..+-+.......-+..+.+++.... .++
T Consensus 122 ~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~~~ 183 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-IQE 183 (287)
T ss_pred CCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-ccC
Confidence 4899999999999988842 1 257888888765544332222111111111122332222 268
Q ss_pred ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 139 TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 139 s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
++|+|+|+.++|+++. .++..+|+...+-|+|||++++......
T Consensus 184 ~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~~~ 227 (287)
T PRK12335 184 EYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGYNLIVCAMDT 227 (287)
T ss_pred CccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 9999999999999742 2556688888999999999776553222
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc-ccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 219 SGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP-AYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P-~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
+..+ ...| .+..+.+|+++.+. + |+|.+.+.
T Consensus 228 ~~~~---------------------------------~~~p~~~~~~~~el~~~~~--~-~~i~~~~e 259 (287)
T PRK12335 228 EDYP---------------------------------CPMPFSFTFKEGELKDYYQ--D-WEIVKYNE 259 (287)
T ss_pred ccCC---------------------------------CCCCCCcccCHHHHHHHhC--C-CEEEEEec
Confidence 2100 1122 35678999998875 3 88877753
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=84.01 Aligned_cols=141 Identities=19% Similarity=0.219 Sum_probs=96.9
Q ss_pred ccchHHhhHH---HHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCC
Q 018250 17 TCSYAHNSQF---QRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLP 93 (359)
Q Consensus 17 ~~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~ 93 (359)
+.-|.+||.+ |..+.+.++.++. ++ .+.+--|+|+|||||-.+-.+-
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELLa--------lp-----~~~~~~iLDIGCGsGLSg~vL~----------------- 69 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELLA--------LP-----GPKSGLILDIGCGSGLSGSVLS----------------- 69 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHhh--------CC-----CCCCcEEEEeccCCCcchheec-----------------
Confidence 4578899875 6777766666652 22 3457889999999998777651
Q ss_pred CCCceEEecCCCCCchHHHHH-hCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCce
Q 018250 94 VPDFQVFFNDHTENDFNTLFR-TLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSI 172 (359)
Q Consensus 94 ~p~~~v~~nDLp~NDFn~lf~-~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i 172 (359)
.+.-+++-.|...-|....-. .+. ..+..+-.+ .+..|++++||-++|-+|+|||=...+...+
T Consensus 70 ~~Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG---~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~----------- 134 (270)
T KOG1541|consen 70 DSGHQWIGVDISPSMLEQAVERELE-GDLILCDMG---EGLPFRPGTFDGVISISAVQWLCNADKSLHV----------- 134 (270)
T ss_pred cCCceEEeecCCHHHHHHHHHhhhh-cCeeeeecC---CCCCCCCCccceEEEeeeeeeecccCccccC-----------
Confidence 234578888888777554432 121 122222222 3566999999999999999997654332211
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 173 KCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 173 ~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
=++-+..|+..-..-|++|++-|+.+--..
T Consensus 135 ----------------P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 135 ----------------PKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred ----------------hHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 135677899988999999999999996444
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-08 Score=101.17 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=77.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--Cc-ccccccCcccccC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RK-YYAAGVPGSFHGR- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~-~~~~~vpgsfy~~- 133 (359)
..+|+|+|||+|..+..++ +. .|..+++..|+..++-...-+..+. .. .++. ++....
T Consensus 419 g~rVLDIGCGTG~ls~~LA--------~~-------~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~---gDa~dLp 480 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIE--------EE-------TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIK---GDAINLS 480 (677)
T ss_pred CCEEEEeCCCCCHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEE---cchHhCc
Confidence 4799999999998877663 22 2567999999998776655443322 11 1222 344332
Q ss_pred -CCCCCceeEEEecCccccc-CCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 134 -LFPKSTLHVVNSFNAMHWL-SKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 134 -l~p~~s~d~~~S~~alHWL-s~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.||++++|++++++++||+ +.+|..- ..+| ..|...+|+.-.+.|||||+++
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g-----~~f~---------------------~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEG-----KKFN---------------------HEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhccccc-----cccc---------------------HHHHHHHHHHHHHHcCCCcEEE
Confidence 2789999999999999974 4454210 0111 2467788999999999999999
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+.-
T Consensus 535 I~D 537 (677)
T PRK06922 535 IRD 537 (677)
T ss_pred EEe
Confidence 964
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=84.99 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=54.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||||.++..+. +++ ..+|+..|+..++-...-.. .-+ +-+++....||+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~--------~~~--------~~~v~gvD~S~~Ml~~a~~~----~~~---~~~d~~~lp~~d 108 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK--------KVF--------KYYVVALDYAENMLKMNLVA----DDK---VVGSFEALPFRD 108 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEECCCHHHHHHHHhc----cce---EEechhhCCCCC
Confidence 5799999999999988773 221 24899999988775543221 112 235777777999
Q ss_pred CceeEEEecCcccccCC
Q 018250 138 STLHVVNSFNAMHWLSK 154 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~ 154 (359)
+|+|+++|++++||+.+
T Consensus 109 ~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 109 KSFDVVMSSFALHASDN 125 (226)
T ss_pred CCEEEEEecChhhccCC
Confidence 99999999999999654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=83.82 Aligned_cols=154 Identities=8% Similarity=0.113 Sum_probs=92.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~ 133 (359)
.+..+|+|+|||+|..++.++ ++ .|+.+++.-|+|. .-...-+.+... .--+..++|+|++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~--------~~-------~p~~~~~~~D~~~-~~~~a~~~~~~~gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAML--------KH-------FPELDSTILNLPG-AIDLVNENAAEKGVADRMRGIAVDIYKE 211 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHH--------HH-------CCCCEEEEEecHH-HHHHHHHHHHhCCccceEEEEecCccCC
Confidence 345799999999999888774 33 3567888889973 332222222210 00134456799876
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|+ .|+++.+..+|-... .+-..+|+.-++.|+|||++++.
T Consensus 212 ~~~~--~D~v~~~~~lh~~~~------------------------------------~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 212 SYPE--ADAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCCC--CCEEEeEhhhhcCCh------------------------------------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 6775 499998888884221 12234677788999999999887
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
=.-.++... ..+..+...+. .-|+.. .+..+++.+|+.+++++.| |+..+
T Consensus 254 d~~~~~~~~-------~~~~~~~~~~~---~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 254 DMVIDDPEN-------PNFDYLSHYIL---GAGMPF--------SVLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred EeccCCCCC-------chhhHHHHHHH---Hccccc--------ccccCCCHHHHHHHHHHcC-CCeeE
Confidence 543322110 01122222211 112110 1124566899999999999 97543
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.8e-08 Score=77.64 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccccCCCCC
Q 018250 62 ADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 62 aDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~~l~p~ 137 (359)
+|+|||+|..+..++ +.+ |..+++..|....+....-+.+.. ..-.+.....+... ..+.
T Consensus 1 LdiGcG~G~~~~~l~--------~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALL--------EEL-------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD-YDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHH--------HHC--------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS----CCC-
T ss_pred CEeCccChHHHHHHH--------HhC-------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh-cccc
Confidence 699999999999885 332 467999999998775322111111 00111211111111 1223
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+++|+|+++.+|||+. |+..+|+.-++-|+|||+|
T Consensus 65 ~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 7999999999999972 4556888889999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=74.47 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=67.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C--Cc-ccccccCccc-c
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P--RK-YYAAGVPGSF-H 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~--~~-~~~~~vpgsf-y 131 (359)
..+|+|+|||+|..++.+++ +. |..+++.-|+........-+... . .+ -|.. +++ +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~ 63 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--------LF-------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQ---GDAEF 63 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--------HH-------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE---SCCHG
T ss_pred CCEEEEEcCcCCHHHHHHHh--------cC-------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---Ccccc
Confidence 36899999999999999963 21 34677777776655554444441 1 11 1222 244 2
Q ss_pred cCCCCCCceeEEEecC-cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRLFPKSTLHVVNSFN-AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~-alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..-+ .+.+|+++++. ++|++-.. .+...+|+.-.+-|+|||+|
T Consensus 64 ~~~~-~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l 107 (112)
T PF12847_consen 64 DPDF-LEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLERIRRLLKPGGRL 107 (112)
T ss_dssp GTTT-SSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred Cccc-CCCCCEEEECCCccccccch-----------------------------------hHHHHHHHHHHHhcCCCcEE
Confidence 2222 23599999999 77763211 25667888899999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
+++.
T Consensus 108 vi~~ 111 (112)
T PF12847_consen 108 VINT 111 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.5e-07 Score=77.41 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=72.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh---CCCC-cccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT---LPPR-KYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~---l~~~-~~~~~~vpgsfy~ 132 (359)
+..+|+|+|||+|..+..++. .. .|..+++..|+....-+..-+. ..-. --|.. +++.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~--------~~------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~---~d~~~ 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK--------EL------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ---GDIED 65 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH--------HS------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE---SBTTC
T ss_pred CCCEEEEecCcCcHHHHHHHH--------hc------CCCCEEEEEECcHHHHHHhhcccccccccccceEE---eehhc
Confidence 468999999999999998852 21 2457899999988665554332 2212 12333 34444
Q ss_pred CC--CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 133 RL--FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 133 ~l--~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
.- ++ +.+|+++++.++||+. |...+|+.-.+-|++||++
T Consensus 66 l~~~~~-~~~D~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~lk~~G~~ 106 (152)
T PF13847_consen 66 LPQELE-EKFDIIISNGVLHHFP--------------------------------------DPEKVLKNIIRLLKPGGIL 106 (152)
T ss_dssp GCGCSS-TTEEEEEEESTGGGTS--------------------------------------HHHHHHHHHHHHEEEEEEE
T ss_pred cccccC-CCeeEEEEcCchhhcc--------------------------------------CHHHHHHHHHHHcCCCcEE
Confidence 11 44 8999999999999954 3445677788999999999
Q ss_pred EEEecc
Q 018250 211 VFSLIT 216 (359)
Q Consensus 211 vl~~~g 216 (359)
++....
T Consensus 107 i~~~~~ 112 (152)
T PF13847_consen 107 IISDPN 112 (152)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 998876
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.7e-07 Score=81.03 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=86.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..+. +. ...++..|.....-...-+.++...+ -+.-+.+++...
T Consensus 55 ~~~~vLDiGcG~G~~~~~la--------~~---------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~- 116 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA--------KR---------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL- 116 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH--------HC---------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-
Confidence 46799999999999888774 11 24788888877665444443332110 011112344322
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
| +++|+++|+..+++++. . ++..+++...+-+++|+. +++
T Consensus 117 -~-~~fD~ii~~~~l~~~~~--~----------------------------------~~~~~l~~i~~~~~~~~~--i~~ 156 (219)
T TIGR02021 117 -C-GEFDIVVCMDVLIHYPA--S----------------------------------DMAKALGHLASLTKERVI--FTF 156 (219)
T ss_pred -C-CCcCEEEEhhHHHhCCH--H----------------------------------HHHHHHHHHHHHhCCCEE--EEE
Confidence 3 89999999999877431 1 233345444455554433 344
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..... .... ...+.+. . .. .....++++++.+|+.+++++.| |++...+..
T Consensus 157 ~~~~~-----------~~~~-~~~~~~~----~-~~---~~~~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~ 207 (219)
T TIGR02021 157 APKTA-----------WLAF-LKMIGEL----F-PG---SSRATSAYLHPMTDLERALGELG-WKIVREGLV 207 (219)
T ss_pred CCCch-----------HHHH-HHHHHhh----C-cC---cccccceEEecHHHHHHHHHHcC-ceeeeeecc
Confidence 32211 1111 1111111 1 10 11234678899999999999999 999888765
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-06 Score=78.61 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=112.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C-c--ccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R-K--YYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~-~--~~~~~vpgsf 130 (359)
+-.+|||||||-|..++..+ ++| .+.|+..+|..|...-.-+.+.. . + .-.... .+|
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA--------~~y--------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~-rd~ 134 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAA--------EEY--------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY-RDF 134 (283)
T ss_pred CCCEEEEeCCChhHHHHHHH--------HHc--------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc-ccc
Confidence 35899999999999999886 333 35777777777665544333221 0 1 111110 011
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
++.+|=|+|-=+++.+.. +.+..|++.-.+-|+|||+|
T Consensus 135 ------~e~fDrIvSvgmfEhvg~------------------------------------~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 135 ------EEPFDRIVSVGMFEHVGK------------------------------------ENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred ------ccccceeeehhhHHHhCc------------------------------------ccHHHHHHHHHhhcCCCceE
Confidence 223888888666666432 35667999999999999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc-ccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP-AYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P-~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
++-.++....... .. . .|. +.+.+| -+.||..++...+.+.| |.+...+.+.
T Consensus 173 llh~I~~~~~~~~-~~----~------~~i-------------~~yiFPgG~lPs~~~i~~~~~~~~-~~v~~~~~~~-- 225 (283)
T COG2230 173 LLHSITGPDQEFR-RF----P------DFI-------------DKYIFPGGELPSISEILELASEAG-FVVLDVESLR-- 225 (283)
T ss_pred EEEEecCCCcccc-cc----h------HHH-------------HHhCCCCCcCCCHHHHHHHHHhcC-cEEehHhhhc--
Confidence 9999987763211 00 0 011 112222 26789999999999999 9987666652
Q ss_pred CCCCCCChhHHHHHHHHHhhhhhhhccC---HHHHHHHHHHHHHHHHHHhhh
Q 018250 290 MRHKTFPAQFYLSHLRAVLEGLIGKHFG---EELLENIFNHINTKEAEILSI 338 (359)
Q Consensus 290 ~~~~~~~~~~v~~~iRa~~~~~l~~~~~---e~i~delf~r~~~~~~~~~~~ 338 (359)
..++..++.|.+.+-+ ++. ...-++++..|+..++..-..
T Consensus 226 --------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~ 268 (283)
T COG2230 226 --------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAA 268 (283)
T ss_pred --------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555554444 222 224445555666655544444
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=78.82 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=89.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..+..+++ . ...++..|+........-+.+..... -+..+-+++.+.+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~--------~---------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR--------L---------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh--------c---------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc
Confidence 467999999999988876631 1 12477888765443332222211000 01111123333332
Q ss_pred C-CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 P-KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p-~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+ ++++|+++++.++|+..+ ...+|+...+-|+|||.+++..
T Consensus 108 ~~~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 108 KGAKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred CCCCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 2 479999999999988542 2346777788899999998876
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+... ......+. .++. .+... +.......+.+.+++.+++++.| |+|..+..+
T Consensus 150 ~~~~~~--------~~~~~~~~---~~~~-~~~~~----~~~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~ 204 (224)
T TIGR01983 150 INRTPK--------SYLLAIVG---AEYI-LRIVP----KGTHDWEKFIKPSELTSWLESAG-LRVKDVKGL 204 (224)
T ss_pred cCCCch--------HHHHHHHh---hhhh-hhcCC----CCcCChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence 543210 00111110 0111 01111 00111123568999999999999 999887754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-07 Score=92.42 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=86.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccc--cC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFH--GR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy--~~ 133 (359)
..+|+|+|||+|.+|..+. +.+ .+++..|+.........+..+. +-.++. +++. ..
T Consensus 38 ~~~vLDlGcG~G~~~~~la--------~~~---------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~---~d~~~~~~ 97 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELA--------KKA---------GQVIALDFIESVIKKNESINGHYKNVKFMC---ADVTSPDL 97 (475)
T ss_pred CCEEEEeCCCcCHHHHHHH--------hhC---------CEEEEEeCCHHHHHHHHHHhccCCceEEEE---eccccccc
Confidence 4589999999999999885 221 2678888776555432211111 112333 2443 23
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+|+|+.++||++. .++..+|+..++-|+|||+|++.
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 478899999999999999753 13556888889999999999885
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCcee
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
=..-... | .......|..+++..++...+.++| |.
T Consensus 142 d~~~~~~-------------------------~-----~~~~~~~~~~~~~~~~~~~~f~~~~-~~ 176 (475)
T PLN02336 142 ESCFHQS-------------------------G-----DSKRKNNPTHYREPRFYTKVFKECH-TR 176 (475)
T ss_pred eccCCCC-------------------------C-----cccccCCCCeecChHHHHHHHHHhe-ec
Confidence 3211110 0 0001123556677889999998887 53
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-07 Score=85.76 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy 131 (359)
...+|||+||+.|.-+..+. .+- + -.|+.-| |+-.|..-|+.+.. ..+|.. |-..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~--------~~G-------A-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l--plgv- 174 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRML--------GRG-------A-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL--PLGV- 174 (315)
T ss_pred CCCEEEEecCCCcHHHHHHh--------hcC-------C-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEc--Ccch-
Confidence 35799999999999999884 221 1 3567777 44456555555432 223332 2122
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+.|-+.+++|+|||.-.|=.+.. |- ..|+.-..-|+|||.||
T Consensus 175 E~Lp~~~~FDtVF~MGVLYHrr~-----------------------Pl---------------~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 175 EDLPNLGAFDTVFSMGVLYHRRS-----------------------PL---------------DHLKQLKDSLRPGGELV 216 (315)
T ss_pred hhccccCCcCEEEEeeehhccCC-----------------------HH---------------HHHHHHHHhhCCCCEEE
Confidence 33333789999999655544332 11 14555678899999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+.++..+.... .-+++++.+..++.-|+.||..-+..+++++| |+-.++-..
T Consensus 217 LETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~v~~ 268 (315)
T PF08003_consen 217 LETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRCVDV 268 (315)
T ss_pred EEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEEecC
Confidence 99986553211 12456667788999999999999999999999 976555443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=85.24 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCC
Q 018250 25 QFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDH 104 (359)
Q Consensus 25 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDL 104 (359)
.+|+.+.....|.+-........+ + .....+|+|+|||+|..+..++ +. .|..+++..|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~VLDiGcGtG~~~~~la--------~~-------~p~~~v~gVD~ 72 (202)
T PRK00121 13 KGQQRAIEELWPRLSPAPLDWAEL--F---GNDAPIHLEIGFGKGEFLVEMA--------KA-------NPDINFIGIEV 72 (202)
T ss_pred cchhhhhcccchhhcCCCCCHHHH--c---CCCCCeEEEEccCCCHHHHHHH--------HH-------CCCccEEEEEe
Confidence 455666656666653322111111 1 2346799999999999999884 22 24468999999
Q ss_pred CCCchHHHHHhCCC---Cc-ccccccCccc-c--cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCC
Q 018250 105 TENDFNTLFRTLPP---RK-YYAAGVPGSF-H--GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRF 177 (359)
Q Consensus 105 p~NDFn~lf~~l~~---~~-~~~~~vpgsf-y--~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~ 177 (359)
.......+-+.... .+ .++. +++ . .+.++++++|.++++++.+|...... ..
T Consensus 73 s~~~i~~a~~~~~~~~~~~v~~~~---~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-~~----------------- 131 (202)
T PRK00121 73 HEPGVGKALKKIEEEGLTNLRLLC---GDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-KR----------------- 131 (202)
T ss_pred chHHHHHHHHHHHHcCCCCEEEEe---cCHHHHHHHHcCccccceEEEECCCCCCCcccc-cc-----------------
Confidence 88766655544321 11 1233 344 2 34478899999999998888553110 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 178 MKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 178 ~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
..+...||+.-++-|+|||++++...
T Consensus 132 ------------~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 132 ------------RLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ------------ccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 00234578888999999999998763
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.4e-07 Score=84.29 Aligned_cols=116 Identities=18% Similarity=0.309 Sum_probs=73.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---------C---Ccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---------P---RKYYA 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---------~---~~~~~ 123 (359)
..+++|+|+|||||.-+-.++-.+ .+.++.. ..+.++++..|+...+-...-+... . .+||.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l----~e~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~ 171 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLL----AETLPKA--REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFS 171 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHH----HHHhhhc--CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEE
Confidence 346999999999997533332111 2322211 1346899999999877655444332 1 23442
Q ss_pred cc----------------cCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHH
Q 018250 124 AG----------------VPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA 187 (359)
Q Consensus 124 ~~----------------vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~ 187 (359)
.. ..++..+..+|.+++|+|+|..+|||++.
T Consensus 172 ~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~--------------------------------- 218 (264)
T smart00138 172 RVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE--------------------------------- 218 (264)
T ss_pred eCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH---------------------------------
Confidence 21 01233343457899999999999999752
Q ss_pred HHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 188 QFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 188 Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+...+|+.-++-|+|||.|++.
T Consensus 219 ---~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 219 ---PTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ---HHHHHHHHHHHHHhCCCeEEEEE
Confidence 13345677788999999998863
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-06 Score=76.90 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=68.9
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccc-----ccC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSF-----HGR 133 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsf-----y~~ 133 (359)
..+.|+|||+|..++.++ +.+ -+|+..|+.+-+.+-+- ..++..|. -+|-+| ...
T Consensus 35 ~~a~DvG~G~Gqa~~~ia--------e~~---------k~VIatD~s~~mL~~a~-k~~~~~y~--~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIA--------EHY---------KEVIATDVSEAMLKVAK-KHPPVTYC--HTPSTMSSDEMVDL 94 (261)
T ss_pred ceEEEeccCCCcchHHHH--------Hhh---------hhheeecCCHHHHHHhh-cCCCcccc--cCCccccccccccc
Confidence 388999999996655553 333 27889999887765322 22222221 112222 233
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+=+++|+|+|.+.-|+||+ |+.+|++.-.+.|++.|.+++.
T Consensus 95 ~g~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHWF---------------------------------------DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cCCCcceeeehhhhhHHhh---------------------------------------chHHHHHHHHHHcCCCCCEEEE
Confidence 3469999999999999994 6778999999999998866666
Q ss_pred eccCCC
Q 018250 214 LITGPS 219 (359)
Q Consensus 214 ~~g~~~ 219 (359)
..=+++
T Consensus 136 W~Y~dd 141 (261)
T KOG3010|consen 136 WNYNDD 141 (261)
T ss_pred EEccCC
Confidence 655544
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=79.22 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=84.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccC--CC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGR--LF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~--l~ 135 (359)
..+|+|+|||+|..+..+. +. ...+++.-|+........-+ ..-.++ .+++... .+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~--------~~--------~~~~~~giD~s~~~i~~a~~---~~~~~~---~~d~~~~l~~~ 71 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLR--------DE--------KQVRGYGIEIDQDGVLACVA---RGVNVI---QGDLDEGLEAF 71 (194)
T ss_pred CCEEEEeCCCCCHHHHHHH--------hc--------cCCcEEEEeCCHHHHHHHHH---cCCeEE---EEEhhhccccc
Confidence 3589999999999876653 11 12355666775533322211 011122 2344432 26
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++++|+++|+.++||+.+.. .+|+ +-++++|..+++++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~--------------------------------------~~l~---e~~r~~~~~ii~~p 110 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPE--------------------------------------EILD---EMLRVGRHAIVSFP 110 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHH--------------------------------------HHHH---HHHHhCCeEEEEcC
Confidence 789999999999999975311 1232 22346777777764
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhh-h--ccCC-ccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEK-A--RTFN-VPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~-~--d~f~-~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.... +.. .+. +...|.....+ . .-++ .+..+++.+|+.+.+++.| |++.....+.
T Consensus 111 ~~~~------------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 111 NFGY------------WRV---RWS-ILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred ChhH------------HHH---HHH-HHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 3221 111 111 11122221111 0 1112 2346889999999999999 9999888874
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-05 Score=73.05 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=45.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
...+|+|+|||+|..+..++ +. ..+++..|+..+.-...-+.... .. -|.. +++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~--------~~---------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~- 121 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA--------RR---------GAKVVASDISPQMVEEARERAPEAGLAGNITFEV---GDL- 121 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH--------Hc---------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE---cCc-
Confidence 35799999999999888774 11 12588888876554433332221 11 1222 121
Q ss_pred cCCCCCCceeEEEecCccccc
Q 018250 132 GRLFPKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWL 152 (359)
-.+++++|+++++.++|+.
T Consensus 122 --~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 122 --ESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred --hhccCCcCEEEEcchhhcC
Confidence 1346889999999999653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-07 Score=75.76 Aligned_cols=97 Identities=24% Similarity=0.347 Sum_probs=63.9
Q ss_pred EEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCCCCC
Q 018250 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 61 IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l~p~ 137 (359)
|+|+|||+|..+..+. +.++ ..|+.+++..|+..++....-+.... +--|+. +++-+-.+++
T Consensus 1 ILDlgcG~G~~~~~l~--------~~~~----~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~---~D~~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA--------RRFD----AGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQ---ADARDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHH--------HHS---------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEE---SCTTCHHHHS
T ss_pred CEEeecCCcHHHHHHH--------HHhh----hcccceEEEEECCHHHHHHHHHhchhcCCceEEEE---CCHhHCcccC
Confidence 7999999999999885 3331 12457999999998776655444421 112333 3443333678
Q ss_pred CceeEEEecCc-ccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 138 STLHVVNSFNA-MHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 138 ~s~d~~~S~~a-lHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
+++|+++++.+ +|++++ +++..+|+.-++-|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 89999999766 998653 366778999999999998
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-06 Score=74.82 Aligned_cols=123 Identities=12% Similarity=0.017 Sum_probs=71.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ +. .+ +++..|+....-..+-+.+....+-+..+.+++++.+ .
T Consensus 20 ~~~vLdlG~G~G~~~~~l~--------~~-------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~ 80 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLK--------GK-------GK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--R 80 (179)
T ss_pred CCeEEEeCCChhHHHHHHH--------hc-------CC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--C
Confidence 3579999999999888774 21 12 7889998775544443332211111222234555533 4
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+++|+++|+..+|.....+.. .+....++..| . .-...+..||+.-.+-|+|||++++...+
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~-------~---------~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG-------K---------DGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred CcccEEEECCCCCCCcchhcc-cchhhhhhhcC-------C---------chHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 599999999888765432210 00000011000 0 00122456888888999999999887743
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-06 Score=78.02 Aligned_cols=196 Identities=18% Similarity=0.204 Sum_probs=116.3
Q ss_pred chHHhhHHHHHHHHH--------HHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcC
Q 018250 19 SYAHNSQFQRGTVDA--------AKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNL 90 (359)
Q Consensus 19 sY~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~ 90 (359)
-|..++..+....-. -..||.....+.++.. ...+.+|+++|||.|....-++ +..
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll--------~~~--- 93 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLL--------KTS--- 93 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhh--------hcC---
Confidence 355555555444322 2455655555544332 2234599999999998777664 221
Q ss_pred CCCCCCceEEecCCCCCchHHHHHhCCC--Cc--ccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccc
Q 018250 91 SLPVPDFQVFFNDHTENDFNTLFRTLPP--RK--YYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLE 166 (359)
Q Consensus 91 ~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~--~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~ 166 (359)
+.|.+.+|+.|...+--.-+=++-.- .+ .|+.-+-++=....++.+|+|++..-+.| |-+|+.
T Consensus 94 --~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pe-------- 160 (264)
T KOG2361|consen 94 --PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPE-------- 160 (264)
T ss_pred --CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChH--------
Confidence 35569999999998654433222111 11 24444433334555778888888775553 334432
Q ss_pred cCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcC
Q 018250 167 WNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMG 246 (359)
Q Consensus 167 ~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eG 246 (359)
-+..-++.-.+-|||||.+++-=.|+.+.. .+ +-. .+-
T Consensus 161 -------------------------k~~~a~~nl~~llKPGG~llfrDYg~~Dla------------ql----RF~-~~~ 198 (264)
T KOG2361|consen 161 -------------------------KMQSVIKNLRTLLKPGGSLLFRDYGRYDLA------------QL----RFK-KGQ 198 (264)
T ss_pred -------------------------HHHHHHHHHHHHhCCCcEEEEeecccchHH------------HH----hcc-CCc
Confidence 123345556788999999999888887621 00 100 222
Q ss_pred CCChhhh-ccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 247 VISEEKA-RTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 247 li~~e~~-d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.|++..+ .+=-.+.||.+.+|+++++.++| |..++++.-
T Consensus 199 ~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 199 CISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred eeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 2332222 12234679999999999999999 987777664
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=78.73 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=76.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|+.+. .. .|..+|+.-|...++-.-+-+.... .. +.-+.++..+ +
T Consensus 43 ~~~vLDiGcGtG~~s~~la--------~~-------~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~--i~~i~~d~~~-~ 104 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA--------IA-------RPELKLTLLESNHKKVAFLREVKAELGLNN--VEIVNGRAED-F 104 (181)
T ss_pred CCeEEEecCCCCccHHHHH--------HH-------CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC--eEEEecchhh-c
Confidence 5789999999999999873 22 2346899999987654333222111 12 1222345533 3
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.+++++|+|+|.. +|++ ..+++.-.+-|+|||++++..
T Consensus 105 ~~~~~fD~I~s~~-~~~~-----------------------------------------~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 105 QHEEQFDVITSRA-LASL-----------------------------------------NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred cccCCccEEEehh-hhCH-----------------------------------------HHHHHHHHHhcCCCCEEEEEc
Confidence 4578999999865 3331 124444467799999999874
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP 259 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P 259 (359)
|... ...+....+.+..+|+- .-+.+++..|
T Consensus 143 -~~~~------------~~~~~~~~e~~~~~~~~-~~~~~~~~~~ 173 (181)
T TIGR00138 143 -GKKY------------LDEIEEAKRKCQVLGVE-PLEVPPLTGP 173 (181)
T ss_pred -CCCc------------HHHHHHHHHhhhhcCce-EeeccccCCC
Confidence 2221 13344444566666753 3344566666
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=78.46 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=89.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..+. +. ..+++..|+..+.....-+.... ..-+.. +++-..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 107 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA--------RL---------GADVTGIDASEENIEVARLHALESGLKIDYRQ---TTAEEL 107 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH--------Hc---------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEe---cCHHHh
Confidence 35789999999999876653 11 13678888876554332222111 111111 222222
Q ss_pred C-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 L-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+ .+++.+|+++++..+++... ...+|+...+-|+|||++++
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred hhhcCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 2 35689999999988888432 22367777888999999998
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+..++... ........ .+.+..++ .. .......+++.+|+.+++++.| |++.+....
T Consensus 150 ~~~~~~~~--------~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~~ 206 (233)
T PRK05134 150 STLNRNLK--------SYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDITGL 206 (233)
T ss_pred EecCCChH--------HHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeeeeE
Confidence 87653321 00111111 11111111 10 0111235678999999999999 998877643
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=78.22 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=62.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
++.++||+|||.|+||+-+++. .+.|..-|....-...+.+.......=+...-.++.+.-+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~-----------------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~ 92 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ-----------------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP 92 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT-----------------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T
T ss_pred CCCcEEEcCCCCcHHHHHHHHC-----------------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc
Confidence 3579999999999999999632 35666666655444433222111110011111122222334
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+.+|+|+|..++|.|.. + .+..+++...+.++|||++++..+
T Consensus 93 -~~yD~I~st~v~~fL~~--~----------------------------------~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 93 -EEYDFIVSTVVFMFLQR--E----------------------------------LRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -TTEEEEEEESSGGGS-G--G----------------------------------GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -CCcCEEEEEEEeccCCH--H----------------------------------HHHHHHHHHHhhcCCcEEEEEEEe
Confidence 68999999999999762 1 233467778899999999888654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=83.42 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=77.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l- 134 (359)
..+|+|+|||+|..|..+++... ...+++.-|+...+-....+.+.. ...-+.++-|+|.+.+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~--------------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR--------------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc--------------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 46899999999999998863211 136899999998776555555432 1122344556887533
Q ss_pred CCCC----ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 135 FPKS----TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 135 ~p~~----s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+|.. ...++++.+++++++ | .|...||+.-++.|+|||+|
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~~--~----------------------------------~e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNFT--P----------------------------------EEAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred hhcccccCCeEEEEecccccCCC--H----------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 4433 456777778888865 2 24556899999999999999
Q ss_pred EEEeccCCC
Q 018250 211 VFSLITGPS 219 (359)
Q Consensus 211 vl~~~g~~~ 219 (359)
++.+-...+
T Consensus 174 lig~d~~~~ 182 (301)
T TIGR03438 174 LIGVDLVKD 182 (301)
T ss_pred EEeccCCCC
Confidence 987765544
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.7e-06 Score=76.19 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=55.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|.++..+. +. .|..+++.-|+..+.....-+.++.-. +. .+++.+ .+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~--------~~-------~~~~~v~giDiS~~~l~~A~~~~~~~~-~~---~~d~~~-~~~ 102 (204)
T TIGR03587 43 KIASILELGANIGMNLAALK--------RL-------LPFKHIYGVEINEYAVEKAKAYLPNIN-II---QGSLFD-PFK 102 (204)
T ss_pred CCCcEEEEecCCCHHHHHHH--------Hh-------CCCCeEEEEECCHHHHHHHHhhCCCCc-EE---EeeccC-CCC
Confidence 35689999999999888773 22 234689999998877665544343211 22 345555 789
Q ss_pred CCceeEEEecCcccccC
Q 018250 137 KSTLHVVNSFNAMHWLS 153 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs 153 (359)
++++|+|+|+.+||+++
T Consensus 103 ~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCEEEEEECChhhhCC
Confidence 99999999999998763
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-06 Score=77.71 Aligned_cols=110 Identities=21% Similarity=0.233 Sum_probs=69.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccC----
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGR---- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~---- 133 (359)
..+|+|+|||+|..|..++ ++. .+.-.|+.-|+.. .+ .++ .-.++ -|++.+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~--------~~~------~~~~~V~aVDi~~--~~----~~~-~v~~i---~~D~~~~~~~~ 107 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAV--------TQI------GDKGRVIACDILP--MD----PIV-GVDFL---QGDFRDELVLK 107 (209)
T ss_pred CCEEEEEcccCCHHHHHHH--------HHc------CCCceEEEEeccc--cc----CCC-CcEEE---ecCCCChHHHH
Confidence 4589999999999888775 332 1234788888854 11 111 11122 2355542
Q ss_pred ----CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 ----LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 ----l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
.++++++|+++|+.+.||... |. .| . ..+ .......|+.-.+-|+|||+
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~----~~~-~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I----PRA-MYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H----HHH-HHHHHHHHHHHHHHcCCCCE
Confidence 267899999999999999431 11 01 0 000 11134678888899999999
Q ss_pred eEEEeccCC
Q 018250 210 MVFSLITGP 218 (359)
Q Consensus 210 lvl~~~g~~ 218 (359)
|++..+..+
T Consensus 161 ~vi~~~~~~ 169 (209)
T PRK11188 161 FVVKVFQGE 169 (209)
T ss_pred EEEEEecCc
Confidence 999776444
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-06 Score=77.65 Aligned_cols=148 Identities=21% Similarity=0.262 Sum_probs=92.1
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC----CC--C--cc---cccccC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL----PP--R--KY---YAAGVP 127 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l----~~--~--~~---~~~~vp 127 (359)
.+|+|+|||+|-.|.-++ ++ .++|..-|+..-+-- ..+.- |. . .| |.....
T Consensus 91 ~~ilDvGCGgGLLSepLA---------rl--------ga~V~GID~s~~~V~-vA~~h~~~dP~~~~~~~y~l~~~~~~~ 152 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLA---------RL--------GAQVTGIDASDDMVE-VANEHKKMDPVLEGAIAYRLEYEDTDV 152 (282)
T ss_pred ceEEEeccCccccchhhH---------hh--------CCeeEeecccHHHHH-HHHHhhhcCchhccccceeeehhhcch
Confidence 679999999999999885 21 257777777652221 22221 11 1 11 322221
Q ss_pred cccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 128 gsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
-++ - ..+|.|+|+-.++.. +|...||++..+-|+||
T Consensus 153 E~~----~--~~fDaVvcsevleHV--------------------------------------~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 153 EGL----T--GKFDAVVCSEVLEHV--------------------------------------KDPQEFLNCLSALLKPN 188 (282)
T ss_pred hhc----c--cccceeeeHHHHHHH--------------------------------------hCHHHHHHHHHHHhCCC
Confidence 111 1 228999997777763 36677999999999999
Q ss_pred ceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 208 GLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 208 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
|++++++..|.=.... +.+ .+.+.+...|-.|.-.-+ -|++++|+..+++.++ +.++.+.-
T Consensus 189 G~lfittinrt~lS~~-----~~i--~~~E~vl~ivp~Gth~~e---------kfi~p~e~~~~l~~~~-~~v~~v~G 249 (282)
T KOG1270|consen 189 GRLFITTINRTILSFA-----GTI--FLAEIVLRIVPKGTHTWE---------KFINPEELTSILNANG-AQVNDVVG 249 (282)
T ss_pred CceEeeehhhhHHHhh-----ccc--cHHHHHHHhcCCCCcCHH---------HcCCHHHHHHHHHhcC-cchhhhhc
Confidence 9999999876521100 011 122222335555554333 5789999999999998 87765543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=73.28 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=90.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC---------ccc----cc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---------KYY----AA 124 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~---------~~~----~~ 124 (359)
..+|+|+|||.|+|++-++ ++ ..+|+..|+...--..+++...-. ..+ +.
T Consensus 35 ~~rvLd~GCG~G~da~~LA--------~~---------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLA--------EQ---------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCeEEEeCCCchhHHHHHH--------hC---------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 4699999999999999985 22 368888888876666554422100 000 11
Q ss_pred ccCcccccCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 125 GVPGSFHGRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 125 ~vpgsfy~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
-+-++|++.-. +...+|.++-..++|= +|+. +...+++.-.+-
T Consensus 98 ~~~~D~~~~~~~~~~~fD~i~D~~~~~~---l~~~---------------------------------~R~~~~~~l~~l 141 (213)
T TIGR03840 98 IFCGDFFALTAADLGPVDAVYDRAALIA---LPEE---------------------------------MRQRYAAHLLAL 141 (213)
T ss_pred EEEccCCCCCcccCCCcCEEEechhhcc---CCHH---------------------------------HHHHHHHHHHHH
Confidence 11235544322 1346888888888773 3331 334567788999
Q ss_pred hccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEE
Q 018250 204 LVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM 283 (359)
Q Consensus 204 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~l 283 (359)
|+|||++++..+..+... ..-|-|.-+.+|+++.+.. + |+|+.+
T Consensus 142 LkpgG~~ll~~~~~~~~~----------------------------------~~gpp~~~~~~eL~~~f~~-~-~~i~~~ 185 (213)
T TIGR03840 142 LPPGARQLLITLDYDQSE----------------------------------MAGPPFSVSPAEVEALYGG-H-YEIELL 185 (213)
T ss_pred cCCCCeEEEEEEEcCCCC----------------------------------CCCcCCCCCHHHHHHHhcC-C-ceEEEE
Confidence 999998777776543211 0114477899999998863 3 899888
Q ss_pred EEeec
Q 018250 284 QQLDQ 288 (359)
Q Consensus 284 e~~~~ 288 (359)
+....
T Consensus 186 ~~~~~ 190 (213)
T TIGR03840 186 ESRDV 190 (213)
T ss_pred eeccc
Confidence 87643
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-06 Score=83.18 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=70.6
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKS 138 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~ 138 (359)
-+|+|+|||+|..++.+. ++ .|..+++..|.........-.++.....-...++++.+.. .++
T Consensus 198 g~VLDlGCG~G~ls~~la--------~~-------~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~ 260 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLA--------RH-------SPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKG 260 (342)
T ss_pred CeEEEeccCcCHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCC
Confidence 489999999999888773 33 3567899999976555444333322111011123344442 367
Q ss_pred ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 139 TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 139 s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.+|+|+|+-.+||.-.. ...+...|++.-++-|+|||.|+++..
T Consensus 261 ~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 261 RFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 89999999999983211 012456788888999999999988763
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=76.70 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=72.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccc--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFH-- 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy-- 131 (359)
...+|+|+|||+|..+..++ ++ .|+..++..|+........-+.+.. ..+ .-+-++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la--------~~-------~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni--~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMA--------KQ-------NPDKNFLGIEIHTPIVLAANNKANKLGLKNL--HVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHH--------Hh-------CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCE--EEEccCHHHH
Confidence 34689999999999998874 22 3567889999877665544443321 111 11223443
Q ss_pred -cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 -GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 -~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..++|++++|.+++++..+|..+.. ... ++ ....||+.-++-|+|||.+
T Consensus 79 ~~~~~~~~~~d~v~~~~pdpw~k~~h-~~~----------r~-------------------~~~~~l~~~~r~LkpgG~l 128 (194)
T TIGR00091 79 LDKFFPDGSLSKVFLNFPDPWPKKRH-NKR----------RI-------------------TQPHFLKEYANVLKKGGVI 128 (194)
T ss_pred HHhhCCCCceeEEEEECCCcCCCCCc-ccc----------cc-------------------CCHHHHHHHHHHhCCCCEE
Confidence 3346788999999999999943210 000 00 0134778889999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
++.+
T Consensus 129 ~~~t 132 (194)
T TIGR00091 129 HFKT 132 (194)
T ss_pred EEEe
Confidence 8887
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=71.78 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=60.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..++.++ ++ .|..+++..|........+-++... ..+ .-+.++.. .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la--------~~-------~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i--~~~~~d~~-~ 92 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA--------LQ-------FPSLQVTAIERNPDALRLIKENRQRFGCGNI--DIIPGEAP-I 92 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCe--EEEecCch-h
Confidence 34689999999999999884 22 2456899999876544443332211 111 11122321 1
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+ ++++|++++..+.+. +..+++...+.|+|||++++.
T Consensus 93 ~~-~~~~D~v~~~~~~~~-----------------------------------------~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 93 EL-PGKADAIFIGGSGGN-----------------------------------------LTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred hc-CcCCCEEEECCCccC-----------------------------------------HHHHHHHHHHhcCCCeEEEEE
Confidence 22 357888887543221 223566667889999999986
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 131 ~~ 132 (187)
T PRK08287 131 FI 132 (187)
T ss_pred Ee
Confidence 64
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-05 Score=71.56 Aligned_cols=104 Identities=23% Similarity=0.242 Sum_probs=72.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
++..+|+|+|+|+|..+..++ ++ .|+++++.-|||.. ....-+ .--+.-+||+|+ .-+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v-~~~~~~-----~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA--------RA-------YPNLRATVFDLPEV-IEQAKE-----ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH--------HH-------STTSEEEEEE-HHH-HCCHHH-----TTTEEEEES-TT-TCC
T ss_pred cCccEEEeccCcchHHHHHHH--------HH-------CCCCcceeeccHhh-hhcccc-----ccccccccccHH-hhh
Confidence 345689999999999998884 44 46789999999961 111111 112444679999 778
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ceeEEE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG--GLMVFS 213 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG--G~lvl~ 213 (359)
|. .|+++-...||=.++ .|-..+|+.-++.|+|| |++++.
T Consensus 157 P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 PV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred cc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 87 999999999983221 24556899999999999 999888
Q ss_pred eccCCC
Q 018250 214 LITGPS 219 (359)
Q Consensus 214 ~~g~~~ 219 (359)
=.-.++
T Consensus 199 e~~~~~ 204 (241)
T PF00891_consen 199 EMVLPD 204 (241)
T ss_dssp EEEECS
T ss_pred eeccCC
Confidence 765544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.7e-05 Score=73.16 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=47.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---------CcccccccCc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---------RKYYAAGVPG 128 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---------~~~~~~~vpg 128 (359)
..+|+|+|||+|.+++.+. +. ...|+..|+..++....-+.... ...|.. +
T Consensus 145 ~~~VLDlGcGtG~~a~~la--------~~---------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~---~ 204 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLA--------LE---------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA---N 204 (315)
T ss_pred CCEEEEecCCCCHHHHHHH--------HC---------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE---c
Confidence 4699999999999998884 11 24789999988776544333221 011221 1
Q ss_pred ccccCCCCCCceeEEEecCccccc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWL 152 (359)
++ . ..++++|+|+|+.++|++
T Consensus 205 Dl-~--~l~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 205 DL-E--SLSGKYDTVTCLDVLIHY 225 (315)
T ss_pred ch-h--hcCCCcCEEEEcCEEEec
Confidence 22 1 126889999999998763
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.8e-06 Score=74.29 Aligned_cols=94 Identities=20% Similarity=0.374 Sum_probs=66.4
Q ss_pred CcceEEEeecCCCCcccHHHHHH------------HHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQN------------IIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYA 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~------------ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~ 123 (359)
+...+++|+|||.|.+|..++.. .|+.-++++. ..|.+++...|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~----------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVPE----------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCC-----------------
Confidence 45688999999999999998643 4555555543 24567777777764
Q ss_pred cccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 124 AGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 124 ~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
..|++.+|+++.+-.+++|+.. .|+..++..-.+-
T Consensus 101 ----------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~l~~l~~~ 135 (201)
T PF05401_consen 101 ----------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAALDRLVAA 135 (201)
T ss_dssp -------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHHHHHHHHT
T ss_pred ----------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHHHHHHHHH
Confidence 2488999999999999998741 2677788888999
Q ss_pred hccCceeEEEec
Q 018250 204 LVPGGLMVFSLI 215 (359)
Q Consensus 204 L~pGG~lvl~~~ 215 (359)
|.|||.||+...
T Consensus 136 L~pgG~LV~g~~ 147 (201)
T PF05401_consen 136 LAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEEEEEEEE
T ss_pred hCCCCEEEEEEe
Confidence 999999999765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.1e-06 Score=81.76 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=68.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~l 134 (359)
.+|+|+|||+|..++.+. ++ .|+.+|++.|...-.....-.++.. .. .-+..+.++.+..+
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred CeEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence 589999999999888774 33 3678999999976444333322210 00 00111223444433
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++.++|+|+|+-.+|+.-.++.. ....+++.-.+-|+|||.|+++.
T Consensus 295 -~~~~fDlIlsNPPfh~~~~~~~~---------------------------------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 -EPFRFNAVLCNPPFHQQHALTDN---------------------------------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -CCCCEEEEEECcCcccCccCCHH---------------------------------HHHHHHHHHHHhcccCCEEEEEE
Confidence 56789999999999984322110 11246666678899999999985
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=73.24 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=73.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.++ +. .|..+++..|.........-+.+.. .. +.-+.+++.+ .
T Consensus 88 ~~~ilDig~G~G~~~~~l~--------~~-------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~d~~~-~ 149 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALA--------KE-------RPDARVTAVDISPEALAVARKNAARLGLDN--VTFLQSDWFE-P 149 (251)
T ss_pred CCeEEEEeCcHhHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCe--EEEEECchhc-c
Confidence 4689999999999988884 22 2456899999877665544333221 11 1122346654 4
Q ss_pred CCCCceeEEEecCcccccCCCC---cccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTP---KVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p---~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
++++++|+++|+--.+..+... ..+... .|...-.-......++..|++.-.+.|+|||+++
T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~---------------e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~ 214 (251)
T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFH---------------EPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLL 214 (251)
T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhhhc---------------CCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEE
Confidence 6789999999975544322211 111000 0000000011123456788999899999999998
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+..
T Consensus 215 ~~~ 217 (251)
T TIGR03534 215 LEI 217 (251)
T ss_pred EEE
Confidence 865
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.2e-05 Score=72.88 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=41.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc---hHHHHHhCCCCcccccccCcccccC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND---FNTLFRTLPPRKYYAAGVPGSFHGR- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND---Fn~lf~~l~~~~~~~~~vpgsfy~~- 133 (359)
..+|||+|||+|..|..+. +... ++=.||..|+.... .....+..+ +-.++. ++....
T Consensus 133 G~~VLDLGaG~G~~t~~lA--------diVG------~~G~VyAVD~s~r~~~dLl~~ak~r~-NI~~I~---~Da~~p~ 194 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVS--------DLVG------PEGVVYAVEFSHRSGRDLTNMAKKRP-NIVPII---EDARYPQ 194 (293)
T ss_pred CCEEEEeCCcCCHHHHHHH--------HHhC------CCCEEEEEECcHHHHHHHHHHhhhcC-CCEEEE---CCccChh
Confidence 3689999999999888775 2221 22378888877653 222222211 111222 122111
Q ss_pred --CCCCCceeEEEecCc
Q 018250 134 --LFPKSTLHVVNSFNA 148 (359)
Q Consensus 134 --l~p~~s~d~~~S~~a 148 (359)
.++..++|+|++..+
T Consensus 195 ~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhcccCCCCEEEEeCC
Confidence 123458999999886
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.06 E-value=1e-05 Score=71.57 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc-ccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY-AAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~-~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..++.+. ++ .|...|++.|.-.......-+++.....- +..+..+.++.+ +
T Consensus 32 ~~~vLDlG~G~G~i~~~la--------~~-------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~ 95 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALA--------KR-------GPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-P 95 (170)
T ss_dssp TCEEEEETSTTSHHHHHHH--------HT-------STCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-C
T ss_pred CCeEEEecCChHHHHHHHH--------Hh-------CCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-c
Confidence 5689999999999999884 33 35667999998876655554443321100 333334665544 4
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+|+|+--+|+-.. ....-+..|++.-.+-|+|||.+++..-
T Consensus 96 ~~~fD~Iv~NPP~~~~~~---------------------------------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGD---------------------------------DGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTCEEEEEE---SBTTSH---------------------------------CHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccc---------------------------------cchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 799999999644443110 0111245678788899999999988664
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=64.64 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=61.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|..+..++ ++ .|+.+++..|.........-+.+.. .. .++. ++....
T Consensus 20 ~~~vldlG~G~G~~~~~l~--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 81 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAA--------RL-------VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVE---GDAPEA 81 (124)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HH-------CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEe---cccccc
Confidence 3599999999999999884 22 2346899999876555443332211 11 1111 222111
Q ss_pred C-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 L-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+ ...+++|++++..+.+ ++..+++.-++.|+|||++++
T Consensus 82 ~~~~~~~~D~v~~~~~~~-----------------------------------------~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGG-----------------------------------------LLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ChhhcCCCCEEEECCcch-----------------------------------------hHHHHHHHHHHHcCCCCEEEE
Confidence 1 2235788887743221 223578888999999999999
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
++.
T Consensus 121 ~~~ 123 (124)
T TIGR02469 121 NAI 123 (124)
T ss_pred Eec
Confidence 863
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=68.45 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=64.9
Q ss_pred ccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
+..+..++++++|++++++++||+. |...+|+.-++-|||||
T Consensus 34 d~~~lp~~~~~fD~v~~~~~l~~~~--------------------------------------d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 34 DAIDLPFDDCEFDAVTMGYGLRNVV--------------------------------------DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred chhhCCCCCCCeeEEEecchhhcCC--------------------------------------CHHHHHHHHHHHcCcCe
Confidence 4445557899999999999999964 23347778899999999
Q ss_pred eeEEEeccCCCCCCCCCcchhHHHHHH-HHHHHHHHHcCCCChhhhccCCc----cccCCCHHHHHHHHHhCCceeEeEE
Q 018250 209 LMVFSLITGPSGIPFADTVQGATYNFL-GSCLWDLAKMGVISEEKARTFNV----PAYFPYVEELESLIQRNGHFAMERM 283 (359)
Q Consensus 209 ~lvl~~~g~~~~~~~~~~~~~~~~~~l-~~al~~lv~eGli~~e~~d~f~~----P~y~ps~~E~~~~i~~~G~F~i~~l 283 (359)
++++.-++.++.... ...+... ... +.--|.+... .+.+.. -..+++.+|+.+.++++| |+..+.
T Consensus 76 ~l~i~d~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~ 145 (160)
T PLN02232 76 RVSILDFNKSNQSVT-----TFMQGWMIDNV---VVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH 145 (160)
T ss_pred EEEEEECCCCChHHH-----HHHHHHHccch---HhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence 999987776542110 0000000 000 0000111000 111111 125789999999999999 975544
Q ss_pred E
Q 018250 284 Q 284 (359)
Q Consensus 284 e 284 (359)
.
T Consensus 146 ~ 146 (160)
T PLN02232 146 Y 146 (160)
T ss_pred E
Confidence 3
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-05 Score=71.13 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=60.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-Cc-ccccccCccccc---
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RK-YYAAGVPGSFHG--- 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~-~~~~~vpgsfy~--- 132 (359)
..+|+|+|||+|..|..+. +.. +.-.|+.-|+...+...+.+.... .. .++. ++...
T Consensus 73 g~~VlD~G~G~G~~~~~la--------~~v-------~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~---~D~~~~~~ 134 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVS--------DIV-------EEGVVYAVEFAPRPMRELLEVAEERKNIIPIL---ADARKPER 134 (226)
T ss_pred CCEEEEEccCCCHHHHHHH--------Hhc-------CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEE---CCCCCcch
Confidence 4699999999999988774 222 123788888887654433322211 11 1122 22221
Q ss_pred -CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 133 -RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 133 -~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.-++ +++|++++..+..| .-..+|+.-++-|||||+++
T Consensus 135 ~~~l~-~~~D~i~~d~~~p~----------------------------------------~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 135 YAHVV-EKVDVIYQDVAQPN----------------------------------------QAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred hhhcc-ccCCEEEECCCChh----------------------------------------HHHHHHHHHHHhcCCCcEEE
Confidence 1123 56999997543222 00124566678899999999
Q ss_pred EEeccC
Q 018250 212 FSLITG 217 (359)
Q Consensus 212 l~~~g~ 217 (359)
+++..+
T Consensus 174 I~v~~~ 179 (226)
T PRK04266 174 LAIKAR 179 (226)
T ss_pred EEEecc
Confidence 987654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=71.82 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=50.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..|..+. +... +.-+|+..|.-.+.-...-+++....+ -+.-+.|++.+-+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la--------~~~~------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA--------EAIE------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred CCEEEEECcCccHHHHHHH--------HhcC------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 4789999999999998774 2221 124788888877554433333321111 01122345554444
Q ss_pred CCCceeEEEecCccccc
Q 018250 136 PKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 136 p~~s~d~~~S~~alHWL 152 (359)
+.+++|.+++..+++++
T Consensus 139 ~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 139 KHAPFDAIIVTAAASTI 155 (205)
T ss_pred cCCCccEEEEccCcchh
Confidence 56799999999888763
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-05 Score=71.46 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=63.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.++ .. .|..+|+..|.....-...-+.... .. +.-+.++..+-.
T Consensus 46 g~~VLDiGcGtG~~al~la--------~~-------~~~~~V~giD~s~~~l~~A~~~~~~~~l~~--i~~~~~d~~~~~ 108 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLA--------IA-------RPELKVTLVDSLGKKIAFLREVAAELGLKN--VTVVHGRAEEFG 108 (187)
T ss_pred CCeEEEEcCCCCHHHHHHH--------HH-------CCCCeEEEEeCcHHHHHHHHHHHHHcCCCC--EEEEeccHhhCC
Confidence 6899999999999999884 22 2456899999877554333222211 11 222233443322
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
. ++++|+++|+.. .++..|++..++-|+|||++++..
T Consensus 109 ~-~~~fDlV~~~~~------------------------------------------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 109 Q-EEKFDVVTSRAV------------------------------------------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred C-CCCccEEEEccc------------------------------------------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 3 679999998531 023457888899999999999886
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
+
T Consensus 146 ~ 146 (187)
T PRK00107 146 G 146 (187)
T ss_pred C
Confidence 3
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=79.87 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=73.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccc-cccccCcccc--
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKY-YAAGVPGSFH-- 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~-~~~~vpgsfy-- 131 (359)
...++|+|||+|..++.++ ++ .|+..++.-|+.......+-+.... ..+ ++. ++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA--------~~-------~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~---~DA~~l 184 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQA--------KN-------NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIIN---YDARLL 184 (390)
T ss_pred CCeEEEEcCcccHHHHHHH--------Hh-------CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEE---CCHHHh
Confidence 4589999999999998885 22 3677889999887666665544322 122 232 3332
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
-..+|++++|.+++++...|..+... ++ -...||+.-++-|+|||.+.
T Consensus 185 l~~~~~~s~D~I~lnFPdPW~KkrHR-------------Rl-------------------v~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 185 LELLPSNSVEKIFVHFPVPWDKKPHR-------------RV-------------------ISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred hhhCCCCceeEEEEeCCCCccccchh-------------hc-------------------cHHHHHHHHHHHcCCCcEEE
Confidence 23589999999999988888322110 01 12458888899999999998
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+.+
T Consensus 233 l~T 235 (390)
T PRK14121 233 LRT 235 (390)
T ss_pred EEE
Confidence 887
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.7e-05 Score=69.70 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=69.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.+. +. ...+++..|+........-++......-+..+-+++.. .+++
T Consensus 37 ~~~vLDlGcG~G~~~~~la--------~~--------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~ 99 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAA--------AA--------GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEF 99 (223)
T ss_pred CCeEEEecCCHHHHHHHHH--------Hc--------CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccC
Confidence 4689999999999988774 11 11378888987755433222221111101222346654 4678
Q ss_pred CceeEEEecCcccccCCCCccccc-ccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNML-EKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~-~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+++|+++++--.+..+... ..+ ....+|+.| . -...++..|++.-.+-|+|||++++....
T Consensus 100 ~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~----------~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------P----------DGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCeeEEEECCCCCCCCccc--ccccChhHhhhCC------C----------cHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 8999999975433322111 000 000011110 0 01234667888888999999999977643
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0001 Score=68.21 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=85.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--C-------ccc----cc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--R-------KYY----AA 124 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~-------~~~----~~ 124 (359)
..||+|+|||.|.|++-+++ + ..+|+..|+...--..+++...- . ..+ +.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--------~---------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--------Q---------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--------C---------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 46999999999999998852 1 35788888887655554432110 0 000 00
Q ss_pred ccCcccccCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 125 GVPGSFHGRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 125 ~vpgsfy~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
-.-+++++... ....+|+++-..++|-+ |+. +...+++.-++-
T Consensus 101 ~~~~D~~~l~~~~~~~fd~v~D~~~~~~l---~~~---------------------------------~R~~~~~~l~~l 144 (218)
T PRK13255 101 IYCGDFFALTAADLADVDAVYDRAALIAL---PEE---------------------------------MRERYVQQLAAL 144 (218)
T ss_pred EEECcccCCCcccCCCeeEEEehHhHhhC---CHH---------------------------------HHHHHHHHHHHH
Confidence 01124443321 12467888888877743 321 334566778899
Q ss_pred hccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEE
Q 018250 204 LVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM 283 (359)
Q Consensus 204 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~l 283 (359)
|+|||++++.+....... ..-|-|..+.+|+++.+. .+ |+|+.+
T Consensus 145 L~pgG~~~l~~~~~~~~~----------------------------------~~gPp~~~~~~el~~~~~-~~-~~i~~~ 188 (218)
T PRK13255 145 LPAGCRGLLVTLDYPQEE----------------------------------LAGPPFSVSDEEVEALYA-GC-FEIELL 188 (218)
T ss_pred cCCCCeEEEEEEEeCCcc----------------------------------CCCCCCCCCHHHHHHHhc-CC-ceEEEe
Confidence 999997665554333210 011336789999999885 33 899888
Q ss_pred EEee
Q 018250 284 QQLD 287 (359)
Q Consensus 284 e~~~ 287 (359)
+...
T Consensus 189 ~~~~ 192 (218)
T PRK13255 189 ERQD 192 (218)
T ss_pred eecc
Confidence 8754
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.3e-05 Score=72.18 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=73.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.+. ++. +..+++..|+-.......-+.++. --+ +.+++.+- .++
T Consensus 65 ~grVLDLGcGsGilsl~la--------~r~-------~~~~V~gVDisp~al~~Ar~n~~~-v~~---v~~D~~e~-~~~ 124 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCML--------HRC-------KPEKIVCVELNPEFARIGKRLLPE-AEW---ITSDVFEF-ESN 124 (279)
T ss_pred CCeEEEcCCCCCHHHHHHH--------HhC-------CCCEEEEEECCHHHHHHHHHhCcC-CEE---EECchhhh-ccc
Confidence 3589999999998887763 221 235899999987554433333331 112 23455433 345
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHH--HHHHHHHHHHHhhccCceeEEEec
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRS--DFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~--D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.++|+|+|+-.++++..... .+ -.+|..|.. ..+ .+..||+..+.-|+|+|.+.+...
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDT--KD--VFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred CCCcEEEEcCCccccCchhh--hh--hhhhccCcc----------------ccccccHHHHHhhhHheecCCceEEEEEe
Confidence 78999999999998642111 10 011211100 001 256789999999999998888765
Q ss_pred cCC
Q 018250 216 TGP 218 (359)
Q Consensus 216 g~~ 218 (359)
|++
T Consensus 185 s~~ 187 (279)
T PHA03411 185 GRP 187 (279)
T ss_pred ccc
Confidence 444
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.3e-05 Score=70.51 Aligned_cols=115 Identities=14% Similarity=0.251 Sum_probs=67.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
+....|||+|||.+..+..+ . ....|+-=||...+ . ++.++ +.-.-++
T Consensus 71 ~~~~viaD~GCGdA~la~~~--------~----------~~~~V~SfDLva~n----------~--~Vtac--dia~vPL 118 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--------P----------NKHKVHSFDLVAPN----------P--RVTAC--DIANVPL 118 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SS----------T--TEEES---TTS-S-
T ss_pred CCCEEEEECCCchHHHHHhc--------c----------cCceEEEeeccCCC----------C--CEEEe--cCccCcC
Confidence 45689999999999877433 1 12466667776421 0 12211 3335568
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|+++.+.+|.= .||..||+--.+-|||||.|.+.-.
T Consensus 119 ~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 119 EDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp -TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEEEEEEe
Confidence 9999999999877653 2778899999999999999988764
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
-. -|.+.+++...|+.-| |++.....
T Consensus 160 ~S-------------------------------------------Rf~~~~~F~~~~~~~G-F~~~~~d~ 185 (219)
T PF05148_consen 160 KS-------------------------------------------RFENVKQFIKALKKLG-FKLKSKDE 185 (219)
T ss_dssp GG-------------------------------------------G-S-HHHHHHHHHCTT-EEEEEEE-
T ss_pred cc-------------------------------------------cCcCHHHHHHHHHHCC-CeEEeccc
Confidence 21 2335778888888889 98877654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3e-05 Score=72.77 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=79.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsf 130 (359)
+...+|+|+|||+|..++.+.+ ++ ++.++...++-.-+.....+++.. .+ .++.+ ++
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~--------r~-------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~---Di 104 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQ--------RT-------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA---DI 104 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhc--------cC-------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh---hH
Confidence 3489999999999999999863 22 235666666665555555555432 11 11221 22
Q ss_pred c--cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 131 H--GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 131 y--~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
- ....+..++|+|+| .|+-... ... ..+.+..+..+.+..-++..+++.-++-|||||
T Consensus 105 ~~~~~~~~~~~fD~Ii~---------NPPyf~~---------~~~--~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 105 KEFLKALVFASFDLIIC---------NPPYFKQ---------GSR--LNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred HHhhhcccccccCEEEe---------CCCCCCC---------ccc--cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 1 23344558999999 4554332 121 224455566677778889999999999999999
Q ss_pred eeEEEec
Q 018250 209 LMVFSLI 215 (359)
Q Consensus 209 ~lvl~~~ 215 (359)
.+.+...
T Consensus 165 ~l~~V~r 171 (248)
T COG4123 165 RLAFVHR 171 (248)
T ss_pred EEEEEec
Confidence 9988873
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=65.70 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=99.3
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------CcccccccCc---cc
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RKYYAAGVPG---SF 130 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~~~~~~vpg---sf 130 (359)
+||++|||||--+.-++ .. .|.+++.-+|...+-+.++-.-+.. ..-...-|.. +-
T Consensus 28 ~vLEiaSGtGqHa~~FA--------~~-------lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFA--------QA-------LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred eEEEEcCCccHHHHHHH--------HH-------CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 79999999999887774 22 4678999999999887776543221 1100010000 00
Q ss_pred c-cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 131 H-GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 131 y-~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
- .-.++..++|.++|...+|-.+- . .-..+++.-++-|+|||.
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~---~---------------------------------~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPW---S---------------------------------AVEGLFAGAARLLKPGGL 136 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCH---H---------------------------------HHHHHHHHHHHhCCCCCE
Confidence 0 00125789999999999998431 1 122366677999999999
Q ss_pred eEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 210 MVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 210 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
|++--+=..++..+++. + ..+...|++ -+.-|-.+..+++.++-.++| ++.+...
T Consensus 137 L~~YGPF~~~G~~ts~S-N----~~FD~sLr~--------------rdp~~GiRD~e~v~~lA~~~G-L~l~~~~ 191 (204)
T PF06080_consen 137 LFLYGPFNRDGKFTSES-N----AAFDASLRS--------------RDPEWGIRDIEDVEALAAAHG-LELEEDI 191 (204)
T ss_pred EEEeCCcccCCEeCCcH-H----HHHHHHHhc--------------CCCCcCccCHHHHHHHHHHCC-CccCccc
Confidence 98887766665544432 1 223334442 244478899999999999999 7765443
|
The function of this family is unknown. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-05 Score=59.04 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=63.9
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C--CcccccccCcccccCC-
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P--RKYYAAGVPGSFHGRL- 134 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~--~~~~~~~vpgsfy~~l- 134 (359)
+|+|+|||+|.++..++. .+..+++..|+..+.....-+... . ...++. +++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAALLADNVEVLK---GDAEELPP 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEE---cChhhhcc
Confidence 589999999998877741 123588889987655444331111 1 111222 2333333
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+.+++|+++++..+++.+ .+...+++...+-|+|||+++++
T Consensus 62 ~~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 EADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3668899999999999851 13445677777788999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.88 E-value=6e-05 Score=72.40 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
+.+|+|+|||+|..++.++ +. .|..+++..|+........-++.....+ -+.-+.+++.+. +
T Consensus 122 ~~~vLDlG~GsG~i~~~la--------~~-------~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~ 185 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACA--------YA-------FPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L 185 (284)
T ss_pred CCEEEEEeCchhHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c
Confidence 4689999999999999884 22 2456899999976555444333221100 011122455443 4
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHHH--HHHHHHHHHHHHHHHHhhccCce
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETFQ--AQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~--~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
|++++|+++|+ |+-+....- ...++++. .|.. +........|++.-.+-|+|||+
T Consensus 186 ~~~~fD~Iv~N---------PPy~~~~~~----------~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 186 PGRKYDLIVSN---------PPYVDAEDM----------ADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred CCCCccEEEEC---------CCCCCccch----------hhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 67789999996 333221100 00111110 0000 01123456688888899999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
+++.+.
T Consensus 247 l~~e~g 252 (284)
T TIGR03533 247 LVVEVG 252 (284)
T ss_pred EEEEEC
Confidence 998875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.85 E-value=9e-05 Score=66.45 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=63.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccccc----
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHG---- 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~---- 132 (359)
...+|+|+|||+|..|..+. +++. +...++..|+.... ..+. --++. +++.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~--------~~~~------~~~~v~~vDis~~~------~~~~-i~~~~---~d~~~~~~~ 87 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAV--------EQVG------GKGRVIAVDLQPMK------PIEN-VDFIR---GDFTDEEVL 87 (188)
T ss_pred CCCEEEEecCCCCHHHHHHH--------HHhC------CCceEEEEeccccc------cCCC-ceEEE---eeCCChhHH
Confidence 35689999999999888774 2221 22367777776522 1111 11222 23322
Q ss_pred ----CCCCCCceeEEEecCccc----ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018250 133 ----RLFPKSTLHVVNSFNAMH----WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL 204 (359)
Q Consensus 133 ----~l~p~~s~d~~~S~~alH----WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 204 (359)
..+|++++|+++|..+.| |.-..+ ....+...+|+.-.+-|
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~-------------------------------~~~~~~~~~l~~~~~~L 136 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHL-------------------------------RSIDLVELALDIAKEVL 136 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHH-------------------------------HHHHHHHHHHHHHHHHc
Confidence 135778999999977643 311100 01134567888889999
Q ss_pred ccCceeEEEec
Q 018250 205 VPGGLMVFSLI 215 (359)
Q Consensus 205 ~pGG~lvl~~~ 215 (359)
+|||++++..+
T Consensus 137 kpgG~lvi~~~ 147 (188)
T TIGR00438 137 KPKGNFVVKVF 147 (188)
T ss_pred cCCCEEEEEEc
Confidence 99999999764
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.1e-05 Score=68.35 Aligned_cols=81 Identities=10% Similarity=-0.040 Sum_probs=48.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..|..+. +.. .+.-.|+.-|.-.......-+.+....+ -+.-+-|+...-+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la--------~~~------~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA--------EIV------GKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHH--------Hhc------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 35799999999999998774 221 1234778777765444333222221000 01222345555556
Q ss_pred CCCceeEEEecCcccc
Q 018250 136 PKSTLHVVNSFNAMHW 151 (359)
Q Consensus 136 p~~s~d~~~S~~alHW 151 (359)
+.+.+|+|++..+.+.
T Consensus 142 ~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 142 ENAPYDRIYVTAAGPD 157 (212)
T ss_pred cCCCcCEEEECCCccc
Confidence 6788999999877543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.4e-05 Score=70.40 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=60.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
+..+.|+|+|||.+..+... + -.|+--||..-+ ..+-+| ++-+-++
T Consensus 179 ~~~~vIaD~GCGEakiA~~~--------~------------~kV~SfDL~a~~----------~~V~~c----Dm~~vPl 224 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASSE--------R------------HKVHSFDLVAVN----------ERVIAC----DMRNVPL 224 (325)
T ss_pred cCceEEEecccchhhhhhcc--------c------------cceeeeeeecCC----------Cceeec----cccCCcC
Confidence 56899999999998866511 1 144455554311 122222 3445668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|+++.+.+|.= .||..|++--.+.|+|||.+.+.-.
T Consensus 225 ~d~svDvaV~CLSLMg---------------------------------------tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLMG---------------------------------------TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccCcccEEEeeHhhhc---------------------------------------ccHHHHHHHHHHHhccCceEEEEeh
Confidence 9999999998766542 2677899999999999999988754
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.79 E-value=9e-05 Score=67.99 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=46.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|.+|..+. +... ++.+|+..|.-.......-+.+....+ -+.-+.++..+.+.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la--------~~~~------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA--------EIVG------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred CcCEEEEECCCccHHHHHHH--------HHhC------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 35799999999999998774 2221 234788888876444333222221000 01122245544444
Q ss_pred CCCceeEEEecCcccc
Q 018250 136 PKSTLHVVNSFNAMHW 151 (359)
Q Consensus 136 p~~s~d~~~S~~alHW 151 (359)
+.+.+|++++..+.+.
T Consensus 143 ~~~~fD~Ii~~~~~~~ 158 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPK 158 (215)
T ss_pred ccCCCCEEEEcCCccc
Confidence 5578999998765433
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.9e-05 Score=71.28 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=88.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC---c-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---K-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~---~-~~~~~vpgsfy~ 132 (359)
.-.+|+|+|||-|..|..++ .. .+.|+..|+..-.-- +.+.-+.. . -|..+ .-.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA--------r~---------Ga~VtgiD~se~~I~-~Ak~ha~e~gv~i~y~~~---~~ed 117 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA--------RL---------GASVTGIDASEKPIE-VAKLHALESGVNIDYRQA---TVED 117 (243)
T ss_pred CCCeEEEecCCccHhhHHHH--------HC---------CCeeEEecCChHHHH-HHHHhhhhccccccchhh---hHHH
Confidence 35799999999998888774 11 378999999863321 11211110 0 02221 1123
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.....+++|+|.|.-.|+.+.+ =..|++..++-+||||.+++
T Consensus 118 l~~~~~~FDvV~cmEVlEHv~d--------------------------------------p~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 118 LASAGGQFDVVTCMEVLEHVPD--------------------------------------PESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HHhcCCCccEEEEhhHHHccCC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 3345589999999777766332 12389999999999999999
Q ss_pred EeccCCCCCCCCCcchhHHH--HHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 213 SLITGPSGIPFADTVQGATY--NFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~--~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
+++.|.-. ..+. -..+-+++ ++-.|--+-+ -|-.++|+...+...| +.+....-
T Consensus 160 STinrt~k--------a~~~~i~~ae~vl~-~vP~gTH~~~---------k~irp~El~~~~~~~~-~~~~~~~g 215 (243)
T COG2227 160 STINRTLK--------AYLLAIIGAEYVLR-IVPKGTHDYR---------KFIKPAELIRWLLGAN-LKIIDRKG 215 (243)
T ss_pred eccccCHH--------HHHHHHHHHHHHHH-hcCCcchhHH---------HhcCHHHHHHhcccCC-ceEEeecc
Confidence 99875421 1111 11122222 3333332222 2346788888887766 66654443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=65.64 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=88.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC--C
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL--F 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l--~ 135 (359)
..||+|+|||.|.+-..+. +. .+++.+--++-. ..+.+.+.. -+..+-|+-.+-| |
T Consensus 14 gsrVLDLGCGdG~LL~~L~--------~~--------k~v~g~GvEid~---~~v~~cv~r---Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLK--------DE--------KQVDGYGVEIDP---DNVAACVAR---GVSVIQGDLDEGLADF 71 (193)
T ss_pred CCEEEecCCCchHHHHHHH--------Hh--------cCCeEEEEecCH---HHHHHHHHc---CCCEEECCHHHhHhhC
Confidence 4899999999998544442 21 123444444322 111111110 1112234444444 8
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++|+|+++-+-+||=+.+ |..+. .+-|+-|.+.+++|+
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~-P~~vL----------------------------------------~EmlRVgr~~IVsFP 110 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRR-PDEVL----------------------------------------EEMLRVGRRAIVSFP 110 (193)
T ss_pred CCCCccEEehHhHHHhHhH-HHHHH----------------------------------------HHHHHhcCeEEEEec
Confidence 9999999999999998754 43221 234677999999986
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcccc------CCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAY------FPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y------~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.-+ .|. .-..|.-.|..+..+ .+..+|| +-|..++++..++.| ++|++-..+.
T Consensus 111 NFg------------~W~----~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 111 NFG------------HWR----NRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD 169 (193)
T ss_pred ChH------------HHH----HHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence 322 122 112344456665543 2334444 469999999999999 9987776664
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=62.32 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=67.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc---ccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY---AAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~---~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..+..+.. + ..+++..|...+.....-+.+.....- +..+.+++.+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~--------~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAK--------N---------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred CCEEEEEccccCHHHHHHHh--------h---------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 35899999999998887742 1 137888888776655443332210000 11223455554
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++..+.+-. |..... ..++. ....+.. ....+..|++.-.+-|+|||.+++..
T Consensus 86 ~~~~~~d~vi~n~p~~~~~--~~~~~~---~~~~~--~~~~~~~----------~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 86 FRGDKFDVILFNPPYLPTE--EEEEWD---DWLNY--ALSGGKD----------GREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred ccccCceEEEECCCcCCCC--chhhhh---hhhhh--hhccCcC----------hHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4556899999876654311 111000 00000 0000000 01235678888889999999998876
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.3e-05 Score=79.55 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=59.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH--HhCCCCcccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF--RTLPPRKYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf--~~l~~~~~~~~~vpgsfy~~ 133 (359)
....+++|+|||+|..+..+++.=| ..+.+-.+|--. .+.++. +-+| -..++.|+- ..
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V--------------~t~s~a~~d~~~-~qvqfaleRGvp----a~~~~~~s~-rL 175 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNV--------------TTMSFAPNDEHE-AQVQFALERGVP----AMIGVLGSQ-RL 175 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCc--------------eEEEcccccCCc-hhhhhhhhcCcc----hhhhhhccc-cc
Confidence 4456679999999999988853211 111222222221 111111 1122 011122222 44
Q ss_pred CCCCCceeEEEecCccc-ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 LFPKSTLHVVNSFNAMH-WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l~p~~s~d~~~S~~alH-WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+||++++|++||+-|+- |.+.-- + +|----+-|+|||.+++
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~g---------------~-----------------------~l~evdRvLRpGGyfv~ 217 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPNDG---------------F-----------------------LLFEVDRVLRPGGYFVL 217 (506)
T ss_pred cCCccchhhhhcccccccchhccc---------------c-----------------------eeehhhhhhccCceEEe
Confidence 49999999999999986 754321 1 22234578999999999
Q ss_pred EeccCC
Q 018250 213 SLITGP 218 (359)
Q Consensus 213 ~~~g~~ 218 (359)
+-.-..
T Consensus 218 S~ppv~ 223 (506)
T PF03141_consen 218 SGPPVY 223 (506)
T ss_pred cCCccc
Confidence 887544
|
; GO: 0008168 methyltransferase activity |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=70.57 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=68.0
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLFP 136 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~p 136 (359)
.+|+|+|||+|..++.++ +. .|..+++..|+........-++...... -+..+-+++.+. +|
T Consensus 135 ~~VLDlG~GsG~iai~la--------~~-------~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA--------YA-------FPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LP 198 (307)
T ss_pred CEEEEEechhhHHHHHHH--------HH-------CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CC
Confidence 689999999999988874 22 2457899999976555444333321000 012223465543 46
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHH-H-HHHHHHHHHHHHHHHHhhccCcee
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETF-Q-AQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y-~-~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
++++|+++|+ |+-+...... ..++++. .|. . +..-.....+++.-.+-|+|||++
T Consensus 199 ~~~fDlIvsN---------PPyi~~~~~~----------~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l 259 (307)
T PRK11805 199 GRRYDLIVSN---------PPYVDAEDMA----------DLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVL 259 (307)
T ss_pred CCCccEEEEC---------CCCCCccchh----------hcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEE
Confidence 6789999996 3222110000 0000000 000 0 001123445888888889999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
++.+.
T Consensus 260 ~~E~g 264 (307)
T PRK11805 260 VVEVG 264 (307)
T ss_pred EEEEC
Confidence 98764
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=65.98 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=44.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..|..+.. .. .+++.-|...+.....-+.+....+ -+.-+.|++.+.+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~--------~~---------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAH--------LV---------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred CCCEEEEECCCccHHHHHHHH--------Hh---------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 457999999999999985531 11 1466666654443333222211000 02222345444344
Q ss_pred CCCceeEEEecCccccc
Q 018250 136 PKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 136 p~~s~d~~~S~~alHWL 152 (359)
+.+++|++++..+++++
T Consensus 141 ~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI 157 (212)
T ss_pred cCCCcCEEEEccCchhh
Confidence 45889999998877663
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=65.84 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=96.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C-cccccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R-KYYAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~-~~~~~~vpgsf 130 (359)
....-++++|||||+|=-- |+. .|.-.|.+-|=..|+=.-+-++..+ + .+|+.|-+.+.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf------------y~~----~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l 138 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF------------YPW----KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL 138 (252)
T ss_pred cCccceEEecccCCCCccc------------ccC----CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC
Confidence 3456789999999998432 221 2556788888776654434333322 1 35777765333
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
- | +|+.|+|.|++..+|- |. +|-..-|+--.+-|+|||++
T Consensus 139 ~-~-l~d~s~DtVV~TlvLC--Sv------------------------------------e~~~k~L~e~~rlLRpgG~i 178 (252)
T KOG4300|consen 139 P-Q-LADGSYDTVVCTLVLC--SV------------------------------------EDPVKQLNEVRRLLRPGGRI 178 (252)
T ss_pred c-c-cccCCeeeEEEEEEEe--cc------------------------------------CCHHHHHHHHHHhcCCCcEE
Confidence 1 1 4999999999977663 22 12233566677899999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCC
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPM 290 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~ 290 (359)
++.--|++.-. + ...+++...+-+..+...|. .=.-|.-+.|+++. |++...+.+..++
T Consensus 179 ifiEHva~~y~----~-~n~i~q~v~ep~~~~~~dGC---------------~ltrd~~e~Leda~-f~~~~~kr~~~~t 237 (252)
T KOG4300|consen 179 IFIEHVAGEYG----F-WNRILQQVAEPLWHLESDGC---------------VLTRDTGELLEDAE-FSIDSCKRFNFGT 237 (252)
T ss_pred EEEecccccch----H-HHHHHHHHhchhhheeccce---------------EEehhHHHHhhhcc-cccchhhcccCCc
Confidence 99988877521 0 11123332333233333442 11234555677776 9998888887666
Q ss_pred CC
Q 018250 291 RH 292 (359)
Q Consensus 291 ~~ 292 (359)
.|
T Consensus 238 tw 239 (252)
T KOG4300|consen 238 TW 239 (252)
T ss_pred eE
Confidence 65
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=68.03 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=27.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF 113 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 113 (359)
...+|+|+|||+|..++.+. +. .+ ..++..|.........-
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~--------~~-------g~-~~v~giDis~~~l~~A~ 159 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAA--------KL-------GA-KKVLAVDIDPQAVEAAR 159 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHH--------Hc-------CC-CeEEEEECCHHHHHHHH
Confidence 35789999999998776552 21 11 25888898765554433
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00021 Score=58.38 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=62.1
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccccC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~~ 133 (359)
.+|+|+|||+|..++.++. .. ..+++..|+-.---......++. .+ -++. +++...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~--------~~--------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~---~D~~~~ 62 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALR--------RG--------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV---GDARDL 62 (117)
T ss_dssp EEEEEETSTTCHHHHHHHH--------HC--------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE---SHHHHH
T ss_pred CEEEEcCcchHHHHHHHHH--------HC--------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE---Cchhhc
Confidence 5899999999998888752 21 24777777754111111222221 11 1222 233333
Q ss_pred --CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 134 --LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 134 --l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.++++++|+++++--.+.....+. .-.++...|++.-.+-|+|||.++
T Consensus 63 ~~~~~~~~~D~Iv~npP~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 63 PEPLPDGKFDLIVTNPPYGPRSGDKA------------------------------ALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp HHTCTTT-EEEEEE--STTSBTT----------------------------------GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCceeEEEEECCCCccccccch------------------------------hhHHHHHHHHHHHHHHcCCCeEEE
Confidence 378899999999544432111000 011256678999999999999999
Q ss_pred EEec
Q 018250 212 FSLI 215 (359)
Q Consensus 212 l~~~ 215 (359)
+.+.
T Consensus 113 ~~~~ 116 (117)
T PF13659_consen 113 FITP 116 (117)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9874
|
... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.9e-05 Score=70.96 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=60.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.+. +. ..-+++..|+........-++.....+ -+....++ ...+
T Consensus 160 g~~VLDvGcGsG~lai~aa--------~~--------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~ 221 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAAL--------KL--------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQP 221 (288)
T ss_pred CCEEEEeCCChhHHHHHHH--------Hc--------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccc
Confidence 3789999999999887652 21 113789999887654443333221100 00000011 1224
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++++|+++++...++ +..++..-.+-|+|||+++++.+
T Consensus 222 ~~~~fDlVvan~~~~~-----------------------------------------l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 222 IEGKADVIVANILAEV-----------------------------------------IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred cCCCceEEEEecCHHH-----------------------------------------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 5679999999754333 12355556788999999999876
Q ss_pred cC
Q 018250 216 TG 217 (359)
Q Consensus 216 g~ 217 (359)
..
T Consensus 261 ~~ 262 (288)
T TIGR00406 261 LE 262 (288)
T ss_pred cH
Confidence 43
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00047 Score=66.12 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLFP 136 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~p 136 (359)
.+|+|+|||+|..++.++ .. .|..+++..|+........-++...... -+.-+.|++++. +|
T Consensus 116 ~~vLDlG~GsG~i~l~la--------~~-------~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~~ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA--------YE-------FPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-LA 179 (284)
T ss_pred CEEEEEeccHhHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-Cc
Confidence 689999999999888874 22 2356899999876554433333211000 011223465553 45
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+++|+ |+-+........ .. +. ...|....-. -+-...+...+++.-.+-|+|||.+++...
T Consensus 180 ~~~fDlIvsN---------PPyi~~~~~~~~-~~-~~-~~eP~~AL~g-g~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 180 GQKIDIIVSN---------PPYIDEEDLADL-PN-VV-RFEPLLALVG-GDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCccEEEEC---------CCCCCcchhhcC-Cc-cc-ccCcHHHhcC-CCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 5689999995 222211100000 00 00 0000000000 001123566788888889999999998885
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.001 Score=64.20 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=63.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----C-cccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----R-KYYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~-~~~~~~vpgsf 130 (359)
.+-+|||+|||.|+.|..++. +.. .|.-+++--|.-.-.-+..-+.... + --|..+ +-
T Consensus 123 ~p~~VldIGcGpgpltaiila------a~~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~---Da 186 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLA------KHH-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA---DV 186 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHH------Hhc-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC---ch
Confidence 568999999999988777642 112 3556788888776332222222211 1 224333 22
Q ss_pred ccCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 131 HGRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 131 y~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
-+ +. +.+.+|+||+. ++|-.++.+ =...|+.-++-|+|||.
T Consensus 187 ~~-~~~~l~~FDlVF~~-ALi~~dk~~------------------------------------k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 187 MD-VTESLKEYDVVFLA-ALVGMDKEE------------------------------------KVKVIEHLGKHMAPGAL 228 (296)
T ss_pred hh-cccccCCcCEEEEe-ccccccccc------------------------------------HHHHHHHHHHhcCCCcE
Confidence 12 22 24789999999 666543211 12356677899999999
Q ss_pred eEEEe
Q 018250 210 MVFSL 214 (359)
Q Consensus 210 lvl~~ 214 (359)
+++-+
T Consensus 229 Lvlr~ 233 (296)
T PLN03075 229 LMLRS 233 (296)
T ss_pred EEEec
Confidence 99887
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00097 Score=62.95 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=67.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---CCc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---PRK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---~~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..++.++ +. .|..+++..|.........-+... ... -++. +++..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la--------~~-------~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~---~d~~~ 169 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALA--------KE-------RPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQ---GDWFE 169 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEE---ccccC
Confidence 35689999999999888774 22 234689999987765544443322 111 1222 24433
Q ss_pred CCCCCCceeEEEecCccc---ccCCCCcccccccccccCCCceeecCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhccCc
Q 018250 133 RLFPKSTLHVVNSFNAMH---WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ-AQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alH---WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~-~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
.++++++|+++|+--.. -...+++.+.+.. |.. ..+. .....++..|++.-.+-|+|||
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~e--------------p~~--al~~g~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHE--------------PHL--ALFGGEDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcC--------------Cch--hhcCCCCHHHHHHHHHHHHHHhcccCC
Confidence 23468999999952210 0000111110000 000 0000 1123456778888889999999
Q ss_pred eeEEEe
Q 018250 209 LMVFSL 214 (359)
Q Consensus 209 ~lvl~~ 214 (359)
++++..
T Consensus 233 ~l~~e~ 238 (275)
T PRK09328 233 WLLLEI 238 (275)
T ss_pred EEEEEE
Confidence 999965
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=64.78 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=67.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|.|||||..++... . ....++..|+-..+....-.++.. .. +.-+-+++.+..
T Consensus 183 g~~vLDp~cGtG~~lieaa--------~---------~~~~v~g~Di~~~~~~~a~~nl~~~g~~~--i~~~~~D~~~l~ 243 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAG--------L---------MGAKVIGCDIDWKMVAGARINLEHYGIED--FFVKRGDATKLP 243 (329)
T ss_pred cCEEEECCCCCCHHHHHHH--------H---------hCCeEEEEcCCHHHHHHHHHHHHHhCCCC--CeEEecchhcCC
Confidence 4689999999998655432 1 124789999877665544333321 11 112235666555
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++--..--+..+ + . ....-...+|+.-++-|+|||++++.+
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~-------------~---------~-------~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAA-------------G---------D-------GLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred cccCCCCEEEECCCCcCccccc-------------C---------C-------chHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 6788999999953221100000 0 0 011124567888889999999999998
Q ss_pred ccCC
Q 018250 215 ITGP 218 (359)
Q Consensus 215 ~g~~ 218 (359)
....
T Consensus 295 ~~~~ 298 (329)
T TIGR01177 295 PTRI 298 (329)
T ss_pred cCCC
Confidence 6543
|
This family is found exclusively in the Archaea. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=67.18 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=71.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccccc--CCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHG--RLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~--~l~ 135 (359)
..+|+|+|||+|.-|+.++ +.. +...++..|+.......+-+.+.....-+..+.++..+ ..+
T Consensus 245 g~~VLDlgaG~G~~t~~la--------~~~-------~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 245 GERVLDACAAPGGKTAHIL--------ELA-------PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred CCEEEEeCCCCChHHHHHH--------HHc-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 4689999999999998775 222 12578999998766665544443210001112234432 224
Q ss_pred CCCceeEEEecC---cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 136 PKSTLHVVNSFN---AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 136 p~~s~d~~~S~~---alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+++++|.|++.. ...-+.+-|+.. | .. .++-. ..+......+|..-++-|+|||+|+.
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~-------~-------~~-~~~~l----~~l~~~q~~iL~~a~~~LkpGG~lvy 370 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIK-------W-------LR-RPEDI----AALAALQSEILDALWPLLKPGGTLLY 370 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCcccc-------c-------cC-CHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 568899999632 111112222211 0 00 11111 12334556788888899999999998
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
++.
T Consensus 371 stc 373 (427)
T PRK10901 371 ATC 373 (427)
T ss_pred EeC
Confidence 875
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00054 Score=63.34 Aligned_cols=139 Identities=22% Similarity=0.295 Sum_probs=84.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc---cccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY---YAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~---~~~~vpgsfy~~l 134 (359)
..+++|||||||-....+ +... -.+.-.|+..||.... -.+.-| +.+- --.| .+.
T Consensus 126 F~~~lDLGCGTGL~G~~l--------R~~a---------~~ltGvDiS~nMl~kA---~eKg~YD~L~~Ae-a~~F-l~~ 183 (287)
T COG4976 126 FRRMLDLGCGTGLTGEAL--------RDMA---------DRLTGVDISENMLAKA---HEKGLYDTLYVAE-AVLF-LED 183 (287)
T ss_pred cceeeecccCcCcccHhH--------HHHH---------hhccCCchhHHHHHHH---HhccchHHHHHHH-HHHH-hhh
Confidence 678999999999988876 2221 1344568888885332 111111 1110 0012 222
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.-+..+|+|.+.-.|-+|- ++..++-.-+.-|+|||.|.|+.
T Consensus 184 ~~~er~DLi~AaDVl~YlG--------------------------------------~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 184 LTQERFDLIVAADVLPYLG--------------------------------------ALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred ccCCcccchhhhhHHHhhc--------------------------------------chhhHHHHHHHhcCCCceEEEEe
Confidence 3356778888766666643 34456777899999999999987
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
=.-++.. +. .+....+ |..+..=++..++..| |++..++...
T Consensus 226 E~l~~~~-------~f---~l~ps~R--------------------yAH~~~YVr~~l~~~G-l~~i~~~~tt 267 (287)
T COG4976 226 ETLPDDG-------GF---VLGPSQR--------------------YAHSESYVRALLAASG-LEVIAIEDTT 267 (287)
T ss_pred cccCCCC-------Ce---ecchhhh--------------------hccchHHHHHHHHhcC-ceEEEeeccc
Confidence 4222210 00 1111111 7778888999999999 9998888763
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00053 Score=71.09 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=69.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.++ +. .|..+++..|+........-++...... -+.-+-+++.+. +
T Consensus 139 ~~~VLDlG~GsG~iai~la--------~~-------~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~ 202 (506)
T PRK01544 139 FLNILELGTGSGCIAISLL--------CE-------LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I 202 (506)
T ss_pred CCEEEEccCchhHHHHHHH--------HH-------CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C
Confidence 4689999999999998774 22 2457899999976444333322211000 122233565543 4
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ-AQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~-~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+++++|+++|+--....+..+....+ + ..-.|. ...+. +.....+..+++.-.+-|+|||.+++..
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~----------v--~~~EP~-~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIE----------T--INYEPS-IALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCch----------h--hccCcH-HHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 66789999996433332221110000 0 000000 00000 0122345568888888999999999875
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00065 Score=62.45 Aligned_cols=141 Identities=20% Similarity=0.289 Sum_probs=78.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCc-eEEecCCCCCchHHHHH-hCCC-----CcccccccCc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDF-QVFFNDHTENDFNTLFR-TLPP-----RKYYAAGVPG 128 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~-~v~~nDLp~NDFn~lf~-~l~~-----~~~~~~~vpg 128 (359)
....+.+|.|||.|+-|-.++. |-+ +|-+.|... .|-.-.+ .+.+ ..+|.+|+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl-----------------~~f~~VDlVEp~~-~Fl~~a~~~l~~~~~~v~~~~~~gL-- 113 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLL-----------------PVFDEVDLVEPVE-KFLEQAKEYLGKDNPRVGEFYCVGL-- 113 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCC-----------------CC-SEEEEEES-H-HHHHHHHHHTCCGGCCEEEEEES-G--
T ss_pred CCcceEEecccccchhHHHHHH-----------------HhcCEeEEeccCH-HHHHHHHHHhcccCCCcceEEecCH--
Confidence 4578999999999999876631 111 222223222 2322222 1221 24555554
Q ss_pred ccccCCCCC-CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 129 SFHGRLFPK-STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 129 sfy~~l~p~-~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+..-|+ +..|+||.-||+-.|.+ .|+..||+...+.|+||
T Consensus 114 ---Q~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 114 ---QDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLKRCKQALKPN 154 (218)
T ss_dssp ---GG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHHHHHHHEEEE
T ss_pred ---hhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHHHHHHhCcCC
Confidence 223364 79999999877777653 48999999999999999
Q ss_pred ceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 208 GLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 208 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
|.+++==-...++.. ..+++ | -...||.+.++.+++++| +++.+-+..
T Consensus 155 G~IvvKEN~~~~~~~------------------------~~D~~--D----sSvTRs~~~~~~lF~~AG-l~~v~~~~Q 202 (218)
T PF05891_consen 155 GVIVVKENVSSSGFD------------------------EFDEE--D----SSVTRSDEHFRELFKQAG-LRLVKEEKQ 202 (218)
T ss_dssp EEEEEEEEEESSSEE------------------------EEETT--T----TEEEEEHHHHHHHHHHCT--EEEEEEE-
T ss_pred cEEEEEecCCCCCCc------------------------ccCCc--c----CeeecCHHHHHHHHHHcC-CEEEEeccc
Confidence 998874321111100 00000 1 125688999999999999 888766654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00097 Score=67.20 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=68.4
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC-C
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP-K 137 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p-~ 137 (359)
.+|+|+|||+|..++.+. +. .|..+++..|+........-++......-+.-+-+++.+..+| .
T Consensus 253 ~rVLDLGcGSG~IaiaLA--------~~-------~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVA--------LE-------RPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSE 317 (423)
T ss_pred CEEEEEeChhhHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccC
Confidence 489999999999998874 22 2456899999976555444333321111112223566554444 4
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHH--HHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA--QFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~--Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+++|+++|+ |+-+.......... .+ . ..| ..|... -.-..+..+++.-.+-|+|||.+++..
T Consensus 318 ~~FDLIVSN---------PPYI~~~e~~l~~~-~v--~-~EP--~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 318 GKWDIIVSN---------PPYIENGDKHLLQG-DL--R-FEP--QIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCccEEEEC---------CCCCCcchhhhcch-hh--h-cCH--HHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 689999995 33322111000000 00 0 000 011110 111235567777788899999988766
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=65.00 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=34.0
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
..+|+|-+-+|||..=. .+.-.+.||+.-++-|+|||+|+.+++
T Consensus 144 ~~FDvVScQFalHY~Fe----------------------------------se~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFE----------------------------------SEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp S-EEEEEEES-GGGGGS----------------------------------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcceeehHHHHHHhcC----------------------------------CHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 59999999999999321 012345799999999999999999997
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=66.40 Aligned_cols=126 Identities=19% Similarity=0.166 Sum_probs=77.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l- 134 (359)
..+|+|+|||+|.-|..++ +.. +...++..|...+....+-+++... ..-+..+.++.....
T Consensus 239 g~~VLDlcag~G~kt~~la--------~~~-------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL--------ELA-------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCeEEEeCCCccHHHHHHH--------HHc-------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4689999999999999885 222 1358999999887777665555421 111211233332222
Q ss_pred -CCCCceeEEEe---cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 135 -FPKSTLHVVNS---FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 135 -~p~~s~d~~~S---~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
.+++++|.|++ ++++.-+.+.|+... . .++.++ .+..+.-..+|..-++-|+|||+|
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~-------~-------~~~~~~-----~~l~~lQ~~lL~~a~~~LkpgG~l 364 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKW-------L-------RKPRDI-----AELAELQSEILDAIWPLLKTGGTL 364 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhh-------c-------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCcEE
Confidence 26788999997 234444444444211 0 111111 223345567888888899999999
Q ss_pred EEEeccC
Q 018250 211 VFSLITG 217 (359)
Q Consensus 211 vl~~~g~ 217 (359)
|.++..-
T Consensus 365 vystcs~ 371 (426)
T TIGR00563 365 VYATCSV 371 (426)
T ss_pred EEEeCCC
Confidence 9988644
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0058 Score=59.76 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=98.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc---ccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY---AAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~---~~~vpgsfy~~ 133 (359)
+.-..+|.|-|.|..+-.++ .+ .|.+..+-=|+|.=. .. ..++ +.-+.|+++.-
T Consensus 177 ~v~~avDvGgGiG~v~k~ll--------~~-------fp~ik~infdlp~v~-----~~---a~~~~~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLL--------SK-------YPHIKGINFDLPFVL-----AA---APYLAPGVEHVAGDMFQD 233 (342)
T ss_pred cCceEEEcCCcHhHHHHHHH--------Hh-------CCCCceeecCHHHHH-----hh---hhhhcCCcceeccccccc
Confidence 46778999999999888875 23 456777777777521 11 2233 45567888888
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.|++- ++|.-++||-+. | +|...||+..++-|+|||.+++.
T Consensus 234 -~P~~d--aI~mkWiLhdwt-------D-----------------------------edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 234 -TPKGD--AIWMKWILHDWT-------D-----------------------------EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred -CCCcC--eEEEEeecccCC-------h-----------------------------HHHHHHHHHHHHhCCCCCEEEEE
Confidence 88665 999988888322 1 48889999999999999998887
Q ss_pred eccCCCCCCCCC--cchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 214 LITGPSGIPFAD--TVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 214 ~~g~~~~~~~~~--~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
=.-.+++...++ .......+.+..+..+ -| --++..|++..+.++| |.+-.+-..
T Consensus 275 E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~---~G--------------kert~~e~q~l~~~~g-F~~~~~~~~ 331 (342)
T KOG3178|consen 275 ENVTPEEDKFDDIDSSVTRDMDLLMLTQTS---GG--------------KERTLKEFQALLPEEG-FPVCMVALT 331 (342)
T ss_pred eccCCCCCCccccccceeehhHHHHHHHhc---cc--------------eeccHHHHHhcchhhc-CceeEEEec
Confidence 653332211111 0111112333333221 24 2478999999999999 988766654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=60.04 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=58.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
...+|+|+|||+|..++.++ +.. .+..+|+..|+-......+-+++.. .. .++ .+++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a--------~~~------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~---~~d~~ 102 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS--------LLV------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI---KGEAP 102 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH--------HHh------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE---Eechh
Confidence 35689999999999998774 111 1345788888876444332222110 11 122 23333
Q ss_pred cCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+.+. .++++|.+++.... .+...+|+.-.+-|+|||++
T Consensus 103 ~~l~~~~~~~D~V~~~~~~-----------------------------------------~~~~~~l~~~~~~LkpgG~l 141 (198)
T PRK00377 103 EILFTINEKFDRIFIGGGS-----------------------------------------EKLKEIISASWEIIKKGGRI 141 (198)
T ss_pred hhHhhcCCCCCEEEECCCc-----------------------------------------ccHHHHHHHHHHHcCCCcEE
Confidence 2221 23578888774211 12334677777899999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
++...
T Consensus 142 v~~~~ 146 (198)
T PRK00377 142 VIDAI 146 (198)
T ss_pred EEEee
Confidence 87553
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00077 Score=64.70 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=62.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--------Cc-cccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--------RK-YYAAGV 126 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--------~~-~~~~~v 126 (359)
+++.+|||+|||+|..+..+++ . .+.-+|...|+-...-...-+.++. .+ -++.+-
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D 139 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD 139 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc
Confidence 4567999999999999887741 1 1123677777765443333222221 11 123332
Q ss_pred CcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 127 PGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 127 pgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
+..|-.. +++++|+|++..+-+|. .+.. .|. ..|++..++-|+|
T Consensus 140 a~~~l~~--~~~~yDvIi~D~~dp~~--~~~~-------------------------l~t-------~ef~~~~~~~L~~ 183 (283)
T PRK00811 140 GIKFVAE--TENSFDVIIVDSTDPVG--PAEG-------------------------LFT-------KEFYENCKRALKE 183 (283)
T ss_pred hHHHHhh--CCCcccEEEECCCCCCC--chhh-------------------------hhH-------HHHHHHHHHhcCC
Confidence 2233222 56789999997655551 0110 111 3577777899999
Q ss_pred CceeEEEe
Q 018250 207 GGLMVFSL 214 (359)
Q Consensus 207 GG~lvl~~ 214 (359)
||+|++..
T Consensus 184 gGvlv~~~ 191 (283)
T PRK00811 184 DGIFVAQS 191 (283)
T ss_pred CcEEEEeC
Confidence 99998754
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=67.42 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=76.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|.-|..++ +.. .+..+|+..|+..+....+-+.+.. .. .+.. ++...-
T Consensus 238 g~~VLD~cagpGgkt~~la--------~~~------~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~---~Da~~l 300 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA--------ELM------KDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKI---ADAERL 300 (431)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHc------CCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE---Cchhhh
Confidence 4689999999999999885 222 1245899999988776665544432 11 1222 232211
Q ss_pred C-CCCCceeEEEe---cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 L-FPKSTLHVVNS---FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 l-~p~~s~d~~~S---~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
. +.++++|.|++ ++.+..+.+.|+.... .+++ -.++..+.....|..-++-|+|||+
T Consensus 301 ~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 301 TEYVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKE----DFKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred hhhhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHH----HHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 1 33578999987 3445555444432211 1111 1233445667789888999999999
Q ss_pred eEEEeccCC
Q 018250 210 MVFSLITGP 218 (359)
Q Consensus 210 lvl~~~g~~ 218 (359)
|+.++....
T Consensus 362 LvYsTCs~~ 370 (431)
T PRK14903 362 LLYSTCTVT 370 (431)
T ss_pred EEEEECCCC
Confidence 999987543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=60.63 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=62.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------Cc--ccccccCccc
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RK--YYAAGVPGSF 130 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~--~~~~~vpgsf 130 (359)
.+|||+|||-|..++.++ +. .|+.++.+.|.- +..+--...+ +. +|.+ +-
T Consensus 160 ~~vlDlGCG~Gvlg~~la--------~~-------~p~~~vtmvDvn---~~Av~~ar~Nl~~N~~~~~~v~~s----~~ 217 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLA--------KK-------SPQAKLTLVDVN---ARAVESARKNLAANGVENTEVWAS----NL 217 (300)
T ss_pred CcEEEeCCCccHHHHHHH--------Hh-------CCCCeEEEEecC---HHHHHHHHHhHHHcCCCccEEEEe----cc
Confidence 499999999999999884 33 467889888863 3333221111 11 2222 44
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
|+.+.. ++|+|+|| |+-...+. ....+. ..++..-++-|++||.|
T Consensus 218 ~~~v~~--kfd~IisN---------PPfh~G~~-------------v~~~~~-----------~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 218 YEPVEG--KFDLIISN---------PPFHAGKA-------------VVHSLA-----------QEIIAAAARHLKPGGEL 262 (300)
T ss_pred cccccc--cccEEEeC---------CCccCCcc-------------hhHHHH-----------HHHHHHHHHhhccCCEE
Confidence 555544 99999994 44322210 001111 13566678899999999
Q ss_pred EEEeccCC
Q 018250 211 VFSLITGP 218 (359)
Q Consensus 211 vl~~~g~~ 218 (359)
.++.-|..
T Consensus 263 ~iVan~~l 270 (300)
T COG2813 263 WIVANRHL 270 (300)
T ss_pred EEEEcCCC
Confidence 98886433
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=65.74 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=74.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..|+.+. +... ...+|+..|+.......+-+.+....+ -+..+.++.. .+.|
T Consensus 251 g~~VLDlgaG~G~kt~~la--------~~~~------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~-~~~~ 315 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMA--------ELMQ------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR-SFSP 315 (445)
T ss_pred CCEEEEECCCCCHHHHHHH--------HHhC------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc-cccc
Confidence 4689999999999998774 2221 124899999998877666555432110 0122223432 2346
Q ss_pred CCceeEEEe----cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 137 KSTLHVVNS----FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 137 ~~s~d~~~S----~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
++++|.|+. +..-+|- +-|+... . ..++.. ++..+....+|..-++-|+|||+|+.
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~--------------~-~~~~~~----~~l~~~q~~iL~~a~~~lkpgG~lvy 375 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLG-RRAELRW--------------K-LTPEKL----AELVGLQAELLDHAASLLKPGGVLVY 375 (445)
T ss_pred CCCCCEEEEcCCCCCcchhh-cCcchhh--------------c-CCHHHH----HHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 788999985 2222221 1222110 0 011111 22334566789999999999999999
Q ss_pred EeccC
Q 018250 213 SLITG 217 (359)
Q Consensus 213 ~~~g~ 217 (359)
++...
T Consensus 376 stcs~ 380 (445)
T PRK14904 376 ATCSI 380 (445)
T ss_pred EeCCC
Confidence 88644
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0056 Score=59.11 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=40.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc-ccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY-AAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~-~~~vpgsfy~~l~ 135 (359)
+..+|+|+|||||-.++..+ +. --..++..|+-+.--..-+.+...+.+= ...+ ..|+..-.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~--------kL--------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~-~~~~~~~~ 224 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA--------KL--------GAKKVVGVDIDPQAVEAARENARLNGVELLVQA-KGFLLLEV 224 (300)
T ss_pred CCCEEEEecCChhHHHHHHH--------Hc--------CCceEEEecCCHHHHHHHHHHHHHcCCchhhhc-ccccchhh
Confidence 46899999999999999874 21 1235777776442211111111100000 0011 24444556
Q ss_pred CCC-ceeEEEecC
Q 018250 136 PKS-TLHVVNSFN 147 (359)
Q Consensus 136 p~~-s~d~~~S~~ 147 (359)
|.+ .+|+|++|-
T Consensus 225 ~~~~~~DvIVANI 237 (300)
T COG2264 225 PENGPFDVIVANI 237 (300)
T ss_pred cccCcccEEEehh
Confidence 664 899999853
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0019 Score=60.86 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=67.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC--
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF-- 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~-- 135 (359)
..+|+|+|||+|..++.+. +. .|..+++..|+........-+++..... ..+.+++.+.+-
T Consensus 87 ~~~vLDlg~GsG~i~l~la--------~~-------~~~~~v~~vDis~~al~~A~~N~~~~~~--~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALA--------AA-------LDGIELHAADIDPAAVRCARRNLADAGG--TVHEGDLYDALPTA 149 (251)
T ss_pred CCEEEEecCchHHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCC--EEEEeechhhcchh
Confidence 4689999999999999884 22 2346888999876555444433321111 112244443221
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH-----HHH--HHHHHHHHHHHHHHHHhhccCc
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE-----TFQ--AQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~-----~y~--~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
..+++|+++|+ |+-+.... ....+|++.. +.. .....-+..++..-.+-|+|||
T Consensus 150 ~~~~fDlVv~N---------PPy~~~~~----------~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG 210 (251)
T TIGR03704 150 LRGRVDILAAN---------APYVPTDA----------IALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG 210 (251)
T ss_pred cCCCEeEEEEC---------CCCCCchh----------hhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 13579999994 33221100 0001222211 000 0112235578888788999999
Q ss_pred eeEEEec
Q 018250 209 LMVFSLI 215 (359)
Q Consensus 209 ~lvl~~~ 215 (359)
++++...
T Consensus 211 ~l~l~~~ 217 (251)
T TIGR03704 211 HLLVETS 217 (251)
T ss_pred EEEEEEC
Confidence 9998864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.011 Score=53.07 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=17.5
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
+..+++|+|||||.-|+..+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCCEEEEeCCCccHHHHHHH
Confidence 34699999999999999885
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0025 Score=64.99 Aligned_cols=122 Identities=15% Similarity=0.127 Sum_probs=69.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~- 133 (359)
..+|+|+|||+|..|+.+++ .. .+.-+++..|+..+.-..+-+++.. .. +.-+-+++.+.
T Consensus 251 g~~VLDlgaG~G~~t~~la~--------~~------~~~~~v~avDi~~~~l~~~~~n~~~~g~~~--v~~~~~D~~~~~ 314 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAE--------LL------KNTGKVVALDIHEHKLKLIEENAKRLGLTN--IETKALDARKVH 314 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------Hh------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCCccccc
Confidence 46899999999999998852 22 1235899999987665555444322 11 12222344322
Q ss_pred -CCCCCceeEEEecC---cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 -LFPKSTLHVVNSFN---AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 -l~p~~s~d~~~S~~---alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
.++ +++|+|++.. ....+++.|+.. |.+ .+... +...+--..+|+.-.+-|+|||+
T Consensus 315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~-------~~~--------~~~~~----~~l~~~q~~iL~~a~~~LkpGG~ 374 (444)
T PRK14902 315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIK-------YNK--------TKEDI----ESLQEIQLEILESVAQYLKKGGI 374 (444)
T ss_pred chhc-ccCCEEEEcCCCCCCeeeccCcchh-------hcC--------CHHHH----HHHHHHHHHHHHHHHHHcCCCCE
Confidence 134 7899999842 233333333211 110 11111 11222335678888899999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
|+.++.
T Consensus 375 lvystc 380 (444)
T PRK14902 375 LVYSTC 380 (444)
T ss_pred EEEEcC
Confidence 997664
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00071 Score=61.46 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=67.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccCCC
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGRLF 135 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~l~ 135 (359)
.++|+|||.|...+.++ .. .|+..++.-|.-.+-...+.+.... .. .++.+-...+...++
T Consensus 20 l~lEIG~G~G~~l~~~A--------~~-------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA--------KR-------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEET-TTSHHHHHHH--------HH-------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred eEEEecCCCCHHHHHHH--------HH-------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 88999999999998885 22 4677888888876554444333221 22 344444455667789
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
|++|+|-++-++.==|-.+-.. |-++. . ..||..-++-|+|||.+.+.+
T Consensus 85 ~~~~v~~i~i~FPDPWpK~rH~-----------krRl~----~---------------~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWPKKRHH-----------KRRLV----N---------------PEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp TTTSEEEEEEES-----SGGGG-----------GGSTT----S---------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCchheEEEeCCCCCcccchh-----------hhhcC----C---------------chHHHHHHHHcCCCCEEEEEe
Confidence 9999999999887777322110 00110 1 137888899999999987776
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0057 Score=56.06 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.1
Q ss_pred cceEEEeecCCCCcccHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~ 77 (359)
...+|||+|||||++|..+.+
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~ 92 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLAR 92 (209)
T ss_pred CCCeEEEECCCchHHHHHHHH
Confidence 458999999999999988753
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0039 Score=61.07 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=43.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|.+|..+. +.+.. .-.|+.-|.........-+.+.. .. .++ .|+..+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA--------~~~~~------~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i---~gD~~~~ 143 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS--------RVVGE------KGLVVSVEYSRKICEIAKRNVRRLGIENVIFV---CGDGYYG 143 (322)
T ss_pred CCEEEEEeCCccHHHHHHH--------HhcCC------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEE---eCChhhc
Confidence 4689999999999999884 22211 12577777765443322222211 11 122 3455554
Q ss_pred CCCCCceeEEEecCccc
Q 018250 134 LFPKSTLHVVNSFNAMH 150 (359)
Q Consensus 134 l~p~~s~d~~~S~~alH 150 (359)
+.+.+++|+|++..+++
T Consensus 144 ~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVD 160 (322)
T ss_pred ccccCCccEEEECCchH
Confidence 44556789998875543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0047 Score=58.66 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=61.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC--CC--Ccc-cccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL--PP--RKY-YAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l--~~--~~~-~~~~vpgsf 130 (359)
+.+.+|+|+|||+|..+..+. +. .|..++...|+-...-...-+.. +. .++ ++.+-...|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~--------~~-------~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIY--------TY-------LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHH--------Hh-------CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 346789999999999888774 22 24557777777443322211111 11 111 222222223
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..+. ++++|+|+... ++-- ..|..+. -..|++.-.+-|+|||++
T Consensus 130 l~~~--~~~yD~I~~D~-~~~~-~~~~~l~--------------------------------t~efl~~~~~~L~pgGvl 173 (262)
T PRK04457 130 IAVH--RHSTDVILVDG-FDGE-GIIDALC--------------------------------TQPFFDDCRNALSSDGIF 173 (262)
T ss_pred HHhC--CCCCCEEEEeC-CCCC-CCccccC--------------------------------cHHHHHHHHHhcCCCcEE
Confidence 2221 35788888752 2211 1221111 124777888889999999
Q ss_pred EEEeccCC
Q 018250 211 VFSLITGP 218 (359)
Q Consensus 211 vl~~~g~~ 218 (359)
+++..+++
T Consensus 174 vin~~~~~ 181 (262)
T PRK04457 174 VVNLWSRD 181 (262)
T ss_pred EEEcCCCc
Confidence 99877654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0064 Score=57.70 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=69.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccc-cccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKY-YAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~-~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|.-|..+.+ ... +.-.|+..|.-......+-+++.. ..+ ++. ++.-.-
T Consensus 72 g~~VLDl~ag~G~kt~~la~--------~~~------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~---~D~~~~ 134 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISA--------LMK------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN---FDGRVF 134 (264)
T ss_pred cCEEEEECCCchHHHHHHHH--------HcC------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec---CCHHHh
Confidence 46899999999999988752 221 123789999988777666555432 111 111 121111
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
..+.+++|.|+. ++|+.-. |.+ ...|+.. ..-..+..+....+|+.-++-|+|||+
T Consensus 135 ~~~~~~fD~Vl~--------D~Pcsg~---------G~~---~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 194 (264)
T TIGR00446 135 GAAVPKFDAILL--------DAPCSGE---------GVI---RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV 194 (264)
T ss_pred hhhccCCCEEEE--------cCCCCCC---------ccc---ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 123456888886 3333211 100 0111111 111223334556689888999999999
Q ss_pred eEEEecc
Q 018250 210 MVFSLIT 216 (359)
Q Consensus 210 lvl~~~g 216 (359)
|+.++..
T Consensus 195 lvYstcs 201 (264)
T TIGR00446 195 LVYSTCS 201 (264)
T ss_pred EEEEeCC
Confidence 9988753
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0071 Score=61.54 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=69.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|+.+. +... +.-.++..|........+-+++.. .. +..+.++.-.-.
T Consensus 253 g~~VLDl~ag~G~kt~~la--------~~~~------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~--v~~~~~D~~~~~ 316 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIA--------ELMG------DQGEIWAVDRSASRLKKLQENAQRLGLKS--IKILAADSRNLL 316 (434)
T ss_pred cCEEEEeCCCCchhHHHHH--------HHhC------CCceEEEEcCCHHHHHHHHHHHHHcCCCe--EEEEeCChhhcc
Confidence 4689999999999999885 2221 234789999977665555444321 11 111222332211
Q ss_pred ----CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 135 ----FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 135 ----~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
++++++|.|+. ++|+.-.... ..+.. +... ..++.. +...+.-..+|..-++-|||||+|
T Consensus 317 ~~~~~~~~~fD~Vl~--------DaPCSg~G~~--~r~p~-~~~~-~~~~~~----~~l~~~Q~~iL~~a~~~lkpgG~l 380 (434)
T PRK14901 317 ELKPQWRGYFDRILL--------DAPCSGLGTL--HRHPD-ARWR-QTPEKI----QELAPLQAELLESLAPLLKPGGTL 380 (434)
T ss_pred cccccccccCCEEEE--------eCCCCccccc--ccCcc-hhhh-CCHHHH----HHHHHHHHHHHHHHHHhcCCCCEE
Confidence 34678999986 2333211000 00000 0000 011111 223445578898889999999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
|.++.
T Consensus 381 vystc 385 (434)
T PRK14901 381 VYATC 385 (434)
T ss_pred EEEeC
Confidence 98764
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0089 Score=53.83 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=27.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCch
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDF 109 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDF 109 (359)
..+|+|+|||+|..|+.+. +. .|..+++.-|+-....
T Consensus 41 ~~~VLDiG~G~G~~~~~la--------~~-------~~~~~V~~vD~s~~~~ 77 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAG--------LL-------CPKGRVIAIERDEEVV 77 (196)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HH-------CCCCEEEEEeCCHHHH
Confidence 4689999999999998774 22 1346888888865443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0043 Score=57.01 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
..+|+|+|||||++|..+.
T Consensus 73 g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4799999999999999885
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=66.36 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=72.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------------------C
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------------------R 119 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------------------~ 119 (359)
.+|+|+|||+|..++.+. +.+ |..+++..|+.........++... .
T Consensus 120 ~~VLDlG~GSG~Iai~La--------~~~-------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~ 184 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIA--------EKW-------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLD 184 (1082)
T ss_pred CEEEEEecchHHHHHHHH--------HHC-------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccc
Confidence 589999999999999884 332 345889999887665554433311 0
Q ss_pred cccccccCcccccCCCCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH--------------
Q 018250 120 KYYAAGVPGSFHGRLFPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE-------------- 183 (359)
Q Consensus 120 ~~~~~~vpgsfy~~l~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~-------------- 183 (359)
+ +.-+.++..+.+ ++ ..+|+|+| .|+-+.+..-+.. +++|.+
T Consensus 185 r--V~f~~sDl~~~~-~~~~~~fDlIVS---------NPPYI~~~e~~~l----------~~eV~~~ep~~~~~~~~p~~ 242 (1082)
T PLN02672 185 R--VEFYESDLLGYC-RDNNIELDRIVG---------CIPQILNPNPEAM----------SKLVTENASEEFLYSLSNYC 242 (1082)
T ss_pred c--EEEEECchhhhc-cccCCceEEEEE---------CCCcCCCcchhhc----------ChhhhhccccccccccCccc
Confidence 1 122334554443 32 26999999 4555443221111 122210
Q ss_pred HH-H----HHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 184 TF-Q----AQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 184 ~y-~----~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
|- . +-.-.....++..-.+-|+|||.|++.+.++.
T Consensus 243 AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 243 ALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 00 0 11122245677788889999999999997654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0069 Score=53.27 Aligned_cols=75 Identities=12% Similarity=-0.020 Sum_probs=48.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..|..+++ + ..+++.-|+-......+-+.+.. ..+ .-+-+++.+-.++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~--------~---------~~~v~~vE~~~~~~~~~~~~~~~~~~v--~ii~~D~~~~~~~ 74 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE--------R---------AARVTAIEIDPRLAPRLREKFAAADNL--TVIHGDALKFDLP 74 (169)
T ss_pred cCEEEEECCCccHHHHHHHh--------c---------CCeEEEEECCHHHHHHHHHHhccCCCE--EEEECchhcCCcc
Confidence 45899999999999998853 1 12677777766444444333322 111 1234577666677
Q ss_pred CCceeEEEecCcccc
Q 018250 137 KSTLHVVNSFNAMHW 151 (359)
Q Consensus 137 ~~s~d~~~S~~alHW 151 (359)
+.++|.++|+.-.|+
T Consensus 75 ~~~~d~vi~n~Py~~ 89 (169)
T smart00650 75 KLQPYKVVGNLPYNI 89 (169)
T ss_pred ccCCCEEEECCCccc
Confidence 777899999755554
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0054 Score=58.88 Aligned_cols=122 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccCCC
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGRLF 135 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~l~ 135 (359)
+|+|+|||||..++.++ +. .|...|+..|+...-....-++... .+ +++. ++.+..+-
T Consensus 113 ~ilDlGTGSG~iai~la--------~~-------~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~---~dlf~~~~ 174 (280)
T COG2890 113 RILDLGTGSGAIAIALA--------KE-------GPDAEVIAVDISPDALALARENAERNGLVRVLVVQ---SDLFEPLR 174 (280)
T ss_pred cEEEecCChHHHHHHHH--------hh-------CcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe---eecccccC
Confidence 89999999999999884 33 3557999999976322221111111 11 1122 14444443
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHH-HHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA-QFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~-Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
. .+|+++| .|+-+... .+....+.+. ..|.. ..+.. -......+|+..-..-|+|||.+++..
T Consensus 175 ~--~fDlIVs---------NPPYip~~-~~~~~~~~~~---~EP~~-Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 175 G--KFDLIVS---------NPPYIPAE-DPELLPEVVR---YEPLL-ALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred C--ceeEEEe---------CCCCCCCc-ccccChhhhc---cCHHH-HHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 3 8999999 46666543 1111110000 00000 01110 122345668888888999999998887
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 239 g 239 (280)
T COG2890 239 G 239 (280)
T ss_pred C
Confidence 4
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.056 Score=51.46 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=68.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC----CCcccccc--cCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP----PRKYYAAG--VPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~----~~~~~~~~--vpgsfy 131 (359)
...|+|+|||+|.-|+.++.. .|+-.+...|...---.-.-.+.. ...+.+.- .-++-|
T Consensus 149 ~~~ildlgtGSGaIslsll~~---------------L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHG---------------LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS 213 (328)
T ss_pred cceEEEecCCccHHHHHHHhc---------------CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence 347999999999999988532 234455566654311110000000 00111110 012344
Q ss_pred cCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 018250 132 GRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQ--------FRSDFESILNARAE 202 (359)
Q Consensus 132 ~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q--------~~~D~~~fL~~Ra~ 202 (359)
... .+.+.+|+++| .|+-+.+.+-+. ..|+|. .|..- .-.-+..|+..-.+
T Consensus 214 ~~~~l~~~~~dllvs---------NPPYI~~dD~~~----------l~~eV~-~yEp~lALdGg~eG~~~~~~~~~~a~R 273 (328)
T KOG2904|consen 214 DEHPLLEGKIDLLVS---------NPPYIRKDDNRQ----------LKPEVR-LYEPKLALDGGLEGYDNLVHYWLLATR 273 (328)
T ss_pred cccccccCceeEEec---------CCCcccccchhh----------cCchhe-ecCchhhhccccchhHHHHHHHHhhHh
Confidence 444 78899999999 455544322110 112221 00000 11124567777889
Q ss_pred hhccCceeEEEeccCCCC
Q 018250 203 ELVPGGLMVFSLITGPSG 220 (359)
Q Consensus 203 EL~pGG~lvl~~~g~~~~ 220 (359)
-|+|||.+.+.+.+++..
T Consensus 274 ~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 274 MLQPGGFEQLELVERKEH 291 (328)
T ss_pred hcccCCeEEEEecccccC
Confidence 999999999999988653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.014 Score=60.77 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=17.1
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~ 76 (359)
+++.+|+|+|||+|..+..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll 316 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL 316 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH
Confidence 456799999999999777663
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0094 Score=61.89 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCC
Q 018250 25 QFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDH 104 (359)
Q Consensus 25 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDL 104 (359)
..|++.++...|.+.-...+ .+ +.....++|+|||.|..++.++ +. .|+.-++.-|.
T Consensus 323 ~~q~~~~e~~~p~~~i~~ek-----lf---~~~~p~~lEIG~G~G~~~~~~A--------~~-------~p~~~~iGiE~ 379 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEK-----LV---NEKRKVFLEIGFGMGEHFINQA--------KM-------NPDALFIGVEV 379 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHH-----hC---CCCCceEEEECCCchHHHHHHH--------Hh-------CCCCCEEEEEe
Confidence 37888888877776421111 11 2446778999999999998885 22 45667777777
Q ss_pred CCCchHHHHHhCCC---CcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHH
Q 018250 105 TENDFNTLFRTLPP---RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGV 181 (359)
Q Consensus 105 p~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~ 181 (359)
..+-...+.+.... ....+......+....||++|+|-++-++.=-|-.+-. .|-++. .
T Consensus 380 ~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh-----------~krRl~----~--- 441 (506)
T PRK01544 380 YLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ-----------KKKRIF----N--- 441 (506)
T ss_pred eHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC-----------cccccc----C---
Confidence 65544443333211 12222111112345668999999999999888832211 011111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 182 HETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 182 ~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
..||+.-++-|+|||.+.+.+
T Consensus 442 ------------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 442 ------------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ------------HHHHHHHHHhcCCCCEEEEEc
Confidence 137778889999999998776
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0079 Score=57.33 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc--ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK--YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~--~~~~~vpgsfy 131 (359)
...++|.|||-|.-+. ..|...++-.|+.. ..+.. .. ..+ .+.-
T Consensus 46 gsv~~d~gCGngky~~-------------------~~p~~~~ig~D~c~-------~l~~~ak~~~~~~~~~----ad~l 95 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG-------------------VNPLCLIIGCDLCT-------GLLGGAKRSGGDNVCR----ADAL 95 (293)
T ss_pred cceeeecccCCcccCc-------------------CCCcceeeecchhh-------hhccccccCCCceeeh----hhhh
Confidence 5788999999887443 23556677777764 12211 11 111 1445
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+.++++.|+|.+.|.+.+||||.--. + ...|+--.+.|+|||.+.
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~R----------------------------------R-~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRER----------------------------------R-ERALEELLRVLRPGGNAL 140 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHH----------------------------------H-HHHHHHHHHHhcCCCceE
Confidence 77899999999999999999985211 0 123555678999999999
Q ss_pred EEeccCCCCC
Q 018250 212 FSLITGPSGI 221 (359)
Q Consensus 212 l~~~g~~~~~ 221 (359)
+...+.....
T Consensus 141 vyvwa~~q~~ 150 (293)
T KOG1331|consen 141 VYVWALEQHQ 150 (293)
T ss_pred EEEehhhccC
Confidence 9998876543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.083 Score=48.86 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=86.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C--cc-------c
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R--KY-------Y 122 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~--~~-------~ 122 (359)
....+|++-|||.|.....++ ++ ..+|+..|+...--...|+.... . .. -
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 345799999999999988775 22 36888888887666555554321 0 00 1
Q ss_pred ccccCcccccCCCCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018250 123 AAGVPGSFHGRLFPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR 200 (359)
Q Consensus 123 ~~~vpgsfy~~l~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R 200 (359)
+.-+-|+|++-- |. +++|+|+=.++|+=| | |+.++.|.+ .-
T Consensus 99 i~~~~gDfF~l~-~~~~g~fD~iyDr~~l~Al---p----------------------p~~R~~Ya~-----------~l 141 (218)
T PF05724_consen 99 ITIYCGDFFELP-PEDVGKFDLIYDRTFLCAL---P----------------------PEMRERYAQ-----------QL 141 (218)
T ss_dssp EEEEES-TTTGG-GSCHHSEEEEEECSSTTTS--------------------------GGGHHHHHH-----------HH
T ss_pred eEEEEcccccCC-hhhcCCceEEEEecccccC---C----------------------HHHHHHHHH-----------HH
Confidence 122235777622 22 358999888888763 3 344556665 45
Q ss_pred HHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeE
Q 018250 201 AEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAM 280 (359)
Q Consensus 201 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i 280 (359)
++-|+|||++++.++-.+... ..-|=|.-+.+||++++. .+ |+|
T Consensus 142 ~~ll~p~g~~lLi~l~~~~~~----------------------------------~~GPPf~v~~~ev~~l~~-~~-f~i 185 (218)
T PF05724_consen 142 ASLLKPGGRGLLITLEYPQGE----------------------------------MEGPPFSVTEEEVRELFG-PG-FEI 185 (218)
T ss_dssp HHCEEEEEEEEEEEEES-CSC----------------------------------SSSSS----HHHHHHHHT-TT-EEE
T ss_pred HHHhCCCCcEEEEEEEcCCcC----------------------------------CCCcCCCCCHHHHHHHhc-CC-cEE
Confidence 788999999555554222110 112335567899999998 55 999
Q ss_pred eEEEEeec
Q 018250 281 ERMQQLDQ 288 (359)
Q Consensus 281 ~~le~~~~ 288 (359)
+.++..+.
T Consensus 186 ~~l~~~~~ 193 (218)
T PF05724_consen 186 EELEEEDS 193 (218)
T ss_dssp EEEEEEE-
T ss_pred EEEecccc
Confidence 99998643
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.02 Score=53.52 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+-...+|+|+|.+--.| ||....+ .-+.+||+.-++-|.|||+||+.=
T Consensus 162 ~~~~~fDiIlcLSiTkW--------------------IHLNwgD------------~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 162 MIQPEFDIILCLSITKW--------------------IHLNWGD------------DGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred hccccccEEEEEEeeee--------------------Eeccccc------------HHHHHHHHHHHHhhCcCcEEEEcC
Confidence 34568899999888888 3322222 247789999999999999999864
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0085 Score=57.02 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=58.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Ccc-cccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RKY-YAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~~-~~~~vpg 128 (359)
++.+|+|+|||+|..+..++. . .+.-++...|+..+.....-+.++. .+. +..+-+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~--------~-------~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~ 136 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLK--------H-------KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF 136 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHh--------C-------CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH
Confidence 455999999999997766531 1 1123677777765544433322221 010 1111111
Q ss_pred ccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
.|..+ .++++|+|++..+-++-. +.. .| ...|++.-++-|+|||
T Consensus 137 ~~l~~--~~~~yDvIi~D~~~~~~~--~~~-------------------------l~-------~~ef~~~~~~~L~pgG 180 (270)
T TIGR00417 137 KFLAD--TENTFDVIIVDSTDPVGP--AET-------------------------LF-------TKEFYELLKKALNEDG 180 (270)
T ss_pred HHHHh--CCCCccEEEEeCCCCCCc--ccc-------------------------hh-------HHHHHHHHHHHhCCCc
Confidence 22222 246888888865543310 000 01 1246777789999999
Q ss_pred eeEEE
Q 018250 209 LMVFS 213 (359)
Q Consensus 209 ~lvl~ 213 (359)
++++.
T Consensus 181 ~lv~~ 185 (270)
T TIGR00417 181 IFVAQ 185 (270)
T ss_pred EEEEc
Confidence 99987
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.038 Score=59.70 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=63.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C--c-ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R--K-YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~--~-~~~~~vpgsfy 131 (359)
..+|||+|||||..|+.++. . ...+|+..|+........-+++.. . + -|+. ++.+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~--------~--------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~---~D~~ 599 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAAL--------G--------GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ---ADCL 599 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------C--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE---ccHH
Confidence 36899999999999998852 1 012688888876555444333321 1 1 1222 2332
Q ss_pred ---cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 132 ---GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 132 ---~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
.++ .+++|+|++. |+...... ....+ ....+|+..++..-.+-|+|||
T Consensus 600 ~~l~~~--~~~fDlIilD---------PP~f~~~~-------------~~~~~-----~~~~~~y~~l~~~a~~lL~~gG 650 (702)
T PRK11783 600 AWLKEA--REQFDLIFID---------PPTFSNSK-------------RMEDS-----FDVQRDHVALIKDAKRLLRPGG 650 (702)
T ss_pred HHHHHc--CCCcCEEEEC---------CCCCCCCC-------------ccchh-----hhHHHHHHHHHHHHHHHcCCCC
Confidence 222 4689999984 44332100 00001 1234566677877788999999
Q ss_pred eeEEEe
Q 018250 209 LMVFSL 214 (359)
Q Consensus 209 ~lvl~~ 214 (359)
.++++.
T Consensus 651 ~l~~~~ 656 (702)
T PRK11783 651 TLYFSN 656 (702)
T ss_pred EEEEEe
Confidence 998875
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.014 Score=56.86 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=59.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Cc-ccccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RK-YYAAGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~-~~~~~vp 127 (359)
+++.+|+++|||+|.....++ +. ++.-++...|+....-...-+.++. .+ -++.+-+
T Consensus 90 ~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 457899999999999766553 11 1123566666665322211111211 11 1233322
Q ss_pred cccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 128 gsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
..|.+. .|++++|+|++-.+-+|. .+.. .|. ..|++.-++-|+||
T Consensus 155 ~~~l~~-~~~~~yDvIi~D~~dp~~--~~~~-------------------------L~t-------~ef~~~~~~~L~pg 199 (308)
T PLN02366 155 VEFLKN-APEGTYDAIIVDSSDPVG--PAQE-------------------------LFE-------KPFFESVARALRPG 199 (308)
T ss_pred HHHHhh-ccCCCCCEEEEcCCCCCC--chhh-------------------------hhH-------HHHHHHHHHhcCCC
Confidence 233332 256789999885544441 0110 111 24777778899999
Q ss_pred ceeEEEe
Q 018250 208 GLMVFSL 214 (359)
Q Consensus 208 G~lvl~~ 214 (359)
|+|+...
T Consensus 200 Gvlv~q~ 206 (308)
T PLN02366 200 GVVCTQA 206 (308)
T ss_pred cEEEECc
Confidence 9987653
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.018 Score=53.89 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=47.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ +++.. .+..+++.-|+-.+.....-+.++. .-++. ++|....+ +
T Consensus 50 ~grVLDlG~GSG~Lalala--------~~~~~----~~~~~V~aVEID~~Al~~Ar~n~~~-~~~~~---~D~~~~~~-~ 112 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMV--------HMMMY----AKPREIVCVELNHTYYKLGKRIVPE-ATWIN---ADALTTEF-D 112 (241)
T ss_pred CCEEEEccChHHHHHHHHH--------Hhccc----CCCcEEEEEECCHHHHHHHHhhccC-CEEEE---cchhcccc-c
Confidence 4699999999999988874 22211 1246899999988776665555432 12222 35644333 5
Q ss_pred CceeEEEec
Q 018250 138 STLHVVNSF 146 (359)
Q Consensus 138 ~s~d~~~S~ 146 (359)
+++|+|+||
T Consensus 113 ~~FDlIIsN 121 (241)
T PHA03412 113 TLFDMAISN 121 (241)
T ss_pred CCccEEEEC
Confidence 799999994
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0087 Score=58.00 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=63.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH---HhCCC-------CcccccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF---RTLPP-------RKYYAAGVP 127 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf---~~l~~-------~~~~~~~vp 127 (359)
.-.++|||||-|.--+-.-.. + --+++..|.+.---++.- +.+-. ...|++|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kA---------g-------I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~-- 179 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKA---------G-------IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA-- 179 (389)
T ss_pred ccccceeccCCcccHhHhhhh---------c-------ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe--
Confidence 345789999999876554211 0 124555555542222221 11111 1234443
Q ss_pred cccccCC-----CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 128 GSFHGRL-----FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAE 202 (359)
Q Consensus 128 gsfy~~l-----~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 202 (359)
-+|+++| +++-++|++=|=+|+|+.= .+ ..-...+|+.-++
T Consensus 180 Dc~~~~l~d~~e~~dp~fDivScQF~~HYaF------et----------------------------ee~ar~~l~Nva~ 225 (389)
T KOG1975|consen 180 DCFKERLMDLLEFKDPRFDIVSCQFAFHYAF------ET----------------------------EESARIALRNVAK 225 (389)
T ss_pred ccchhHHHHhccCCCCCcceeeeeeeEeeee------cc----------------------------HHHHHHHHHHHHh
Confidence 3566444 3555699999999999821 00 0112357888899
Q ss_pred hhccCceeEEEecc
Q 018250 203 ELVPGGLMVFSLIT 216 (359)
Q Consensus 203 EL~pGG~lvl~~~g 216 (359)
-|+|||.|+-+++.
T Consensus 226 ~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 226 CLKPGGVFIGTIPD 239 (389)
T ss_pred hcCCCcEEEEecCc
Confidence 99999999999864
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.13 Score=46.31 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.2
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
.-+|+|||||-|..-..+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred ccceeeccCCchHHHHHHH
Confidence 4499999999998766664
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.12 Score=48.14 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=86.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---------Cccc----c
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---------RKYY----A 123 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---------~~~~----~ 123 (359)
...||++.|||.|.+..-+++ + ...|+..|+...--...|+...- ...| +
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~--------~---------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS--------K---------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh--------C---------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 347999999999999998852 1 35788889887666666664321 0001 1
Q ss_pred cccCcccccCCCC---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018250 124 AGVPGSFHGRLFP---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR 200 (359)
Q Consensus 124 ~~vpgsfy~~l~p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R 200 (359)
.-+-|+|++.-.+ -+.+|+|+=.++|+=| ||+....|.+ .-
T Consensus 106 ~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-------------------------pp~~R~~Y~~-----------~l 149 (226)
T PRK13256 106 EIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-------------------------PNDLRTNYAK-----------MM 149 (226)
T ss_pred EEEEccCcCCCccccccCCcCeeeeehhHhcC-------------------------CHHHHHHHHH-----------HH
Confidence 1123466653221 1457777776666653 3445555554 55
Q ss_pred HHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeE
Q 018250 201 AEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAM 280 (359)
Q Consensus 201 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i 280 (359)
++-|+|||.+++.++-.+.. ..-|=+.=+.+|+++..... |+|
T Consensus 150 ~~lL~pgg~llll~~~~~~~-----------------------------------~~GPPf~v~~~e~~~lf~~~--~~i 192 (226)
T PRK13256 150 LEVCSNNTQILLLVMEHDKK-----------------------------------SQTPPYSVTQAELIKNFSAK--IKF 192 (226)
T ss_pred HHHhCCCcEEEEEEEecCCC-----------------------------------CCCCCCcCCHHHHHHhccCC--ceE
Confidence 77899999999998732210 01122444578888888644 888
Q ss_pred eEEEEe
Q 018250 281 ERMQQL 286 (359)
Q Consensus 281 ~~le~~ 286 (359)
+.++..
T Consensus 193 ~~l~~~ 198 (226)
T PRK13256 193 ELIDSK 198 (226)
T ss_pred EEeeec
Confidence 777753
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.03 Score=52.19 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=67.0
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC---cc-cccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---KY-YAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~---~~-~~~~vpgsfy~~l 134 (359)
-.++|||||.|...+.++.. .|+.-++.-+.-.+=...+.+.+... .. .+++-.-.+.+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~---------------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK---------------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH---------------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc
Confidence 57899999999988888632 34445555554443333333322211 11 1222122344667
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++|+|=++-++.=-|-.+-. +|.+|.. ..||+.-++-|+|||.+.+.+
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~~-------------------~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRH-----------HKRRLTQ-------------------PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccc-----------cccccCC-------------------HHHHHHHHHHccCCCEEEEEe
Confidence 7888999999998888822211 1222211 147888899999999998877
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.046 Score=52.66 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=66.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------------Cccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------------RKYYAA 124 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------------~~~~~~ 124 (359)
+++||...|||||-=.-.++-.+. +..+.. ...++++..|+..+--...-+.+.+ .+||..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~----e~~~~~---~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~ 187 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLA----DTLGTA---PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMR 187 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH----Hhhccc---CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHccc
Confidence 469999999999964444432222 222111 1258999999987655544444432 245642
Q ss_pred c---cCc------------ccc--cCC---C-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH
Q 018250 125 G---VPG------------SFH--GRL---F-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE 183 (359)
Q Consensus 125 ~---vpg------------sfy--~~l---~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~ 183 (359)
. .+| .|- +.+ + |.+.+|+|+|-+.|..++.
T Consensus 188 ~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~----------------------------- 238 (287)
T PRK10611 188 GTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK----------------------------- 238 (287)
T ss_pred ccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-----------------------------
Confidence 1 111 221 111 2 2577888888888777542
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 184 TFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 184 ~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+-...++.-++.|+|||+|++
T Consensus 239 -------~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 239 -------TTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred -------HHHHHHHHHHHHHhCCCcEEEE
Confidence 1233466677899999998644
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.016 Score=56.82 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=61.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC--CchHHHHHhCCCCcccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE--NDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~--NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
.-+|+|+|||||-.|+-.+.. . ...|+.-|-.+ +-=.++++.-.-.. -+.-+.|.-.+-.+
T Consensus 61 dK~VlDVGcGtGILS~F~akA--------G--------A~~V~aVe~S~ia~~a~~iv~~N~~~~-ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKA--------G--------ARKVYAVEASSIADFARKIVKDNGLED-VITVIKGKVEDIEL 123 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHh--------C--------cceEEEEechHHHHHHHHHHHhcCccc-eEEEeecceEEEec
Confidence 468999999999999877532 0 12344443321 00001111100011 12233455556668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
|-..+|+++|-|-=+||- ++.=+...|-+|-+=|+|||.++
T Consensus 124 P~eKVDiIvSEWMGy~Ll-----------------------------------~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 124 PVEKVDIIVSEWMGYFLL-----------------------------------YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred CccceeEEeehhhhHHHH-----------------------------------HhhhhhhhhhhhhhccCCCceEc
Confidence 889999999977777753 22335567889999999999875
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.026 Score=57.77 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=56.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--CCcccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--PRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~~~~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|+.+...++..- +. .-..+||.-.--.|-.-++-+.+. .-.--+.-+.|+. +.+-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~----~~-------~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~-r~v~ 254 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGA----RA-------GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM-REVE 254 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTH----HH-------CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T-TTSC
T ss_pred ceEEEEeCCCccHHHHHHHHHHH----Hh-------CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc-cCCC
Confidence 57899999999999887754321 11 013577777766555555433211 1000133334455 4454
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
++..+|+++| -||- +...|. ..|+ .|.+|.+=|||||+|+
T Consensus 255 lpekvDIIVS----ElLG----------sfg~nE-------l~pE---------------~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 LPEKVDIIVS----ELLG----------SFGDNE-------LSPE---------------CLDAADRFLKPDGIMI 294 (448)
T ss_dssp HSS-EEEEEE-------B----------TTBTTT-------SHHH---------------HHHHGGGGEEEEEEEE
T ss_pred CCCceeEEEE----eccC----------Cccccc-------cCHH---------------HHHHHHhhcCCCCEEe
Confidence 5569999999 4442 112222 1222 3567888999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.19 Score=44.50 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=28.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEN 107 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~N 107 (359)
...+|+|+|||+|..|..++ ++. .+...|+..|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~--------~~~------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL--------QRG------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH--------TST------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeee--------ecc------cccceEEEEecccc
Confidence 57999999999999999885 221 13468999999875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.11 Score=47.99 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=65.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
...+++||+||=+..|.+.. .+-|.|..-||-+.+ ..+.= -+|.++.+
T Consensus 50 ~~~lrlLEVGals~~N~~s~------------------~~~fdvt~IDLns~~----------~~I~q----qDFm~rpl 97 (219)
T PF11968_consen 50 RPKLRLLEVGALSTDNACST------------------SGWFDVTRIDLNSQH----------PGILQ----QDFMERPL 97 (219)
T ss_pred cccceEEeecccCCCCcccc------------------cCceeeEEeecCCCC----------CCcee----eccccCCC
Confidence 34699999999988877643 235678888887622 11111 28889887
Q ss_pred C---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce---
Q 018250 136 P---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL--- 209 (359)
Q Consensus 136 p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~--- 209 (359)
| ++++|+|.+|..|.+ +|.+.. . -.-|+.-.+-|+|+|.
T Consensus 98 p~~~~e~FdvIs~SLVLNf---VP~p~~--------------------R------------G~Ml~r~~~fL~~~g~~~~ 142 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNF---VPDPKQ--------------------R------------GEMLRRAHKFLKPPGLSLF 142 (219)
T ss_pred CCCcccceeEEEEEEEEee---CCCHHH--------------------H------------HHHHHHHHHHhCCCCccCc
Confidence 5 889999999999998 564321 1 1245556778899999
Q ss_pred --eEEEec
Q 018250 210 --MVFSLI 215 (359)
Q Consensus 210 --lvl~~~ 215 (359)
|+++++
T Consensus 143 ~~LFlVlP 150 (219)
T PF11968_consen 143 PSLFLVLP 150 (219)
T ss_pred ceEEEEeC
Confidence 888885
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.055 Score=52.39 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=52.3
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C--CcccccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~--~~~~~~~vpgsfy~~l 134 (359)
.+|+|+|||||-.++..+ +. . --+|+..|.-..--...-.+.. . .++.+. .. .-
T Consensus 163 ~~vLDvG~GSGILaiaA~--------kl-G-------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~-----~~ 220 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAA--------KL-G-------AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LS-----ED 220 (295)
T ss_dssp SEEEEES-TTSHHHHHHH--------HT-T-------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CT-----SC
T ss_pred CEEEEeCCcHHHHHHHHH--------Hc-C-------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Ee-----cc
Confidence 599999999999999873 21 1 1368888865432222111110 0 122222 11 11
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.+...+|++++|--.+= +........+-|+|||+|+++-
T Consensus 221 ~~~~~~dlvvANI~~~v-----------------------------------------L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 221 LVEGKFDLVVANILADV-----------------------------------------LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp TCCS-EEEEEEES-HHH-----------------------------------------HHHHHHHCHHHEEEEEEEEEEE
T ss_pred cccccCCEEEECCCHHH-----------------------------------------HHHHHHHHHHhhCCCCEEEEcc
Confidence 34588999998543222 2223334567789999999976
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
+
T Consensus 260 I 260 (295)
T PF06325_consen 260 I 260 (295)
T ss_dssp E
T ss_pred c
Confidence 5
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.24 Score=44.56 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=68.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
+.-++|+|||||--|-.+++.+. |++..+..|+-.---..-..+...+++-+--|--|+..-|-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~- 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRN- 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhcc-
Confidence 56779999999998887764332 456677777743111111111111222222222344444444
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH--HHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ--AQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~--~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+|+|+..= .|+-+.....+. .......+|+ +-.+.=..+||..--.-|.|.|.+.+...
T Consensus 109 ~~VDvLvf---------NPPYVpt~~~~i----------~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 109 ESVDVLVF---------NPPYVPTSDEEI----------GDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCccEEEE---------CCCcCcCCcccc----------hhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 88887765 244332211110 0111233444 44444567788877788888888888876
Q ss_pred cCC
Q 018250 216 TGP 218 (359)
Q Consensus 216 g~~ 218 (359)
-++
T Consensus 170 ~~N 172 (209)
T KOG3191|consen 170 RAN 172 (209)
T ss_pred hhc
Confidence 444
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.44 Score=45.91 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccC--CCHHHHHHHHH
Q 018250 196 ILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYF--PYVEELESLIQ 273 (359)
Q Consensus 196 fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~--ps~~E~~~~i~ 273 (359)
-|+--+.-|.|||.|+.+.- +- . +-.+.+..+|...- + ..||.+ +|..|..++++
T Consensus 231 sl~gl~~al~pgG~lIyTgQ--Pw-H--------PQle~IAr~LtsHr-~-----------g~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTGQ--PW-H--------PQLEMIARVLTSHR-D-----------GKAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred HHHHHHHHhCCCcEEEEcCC--CC-C--------cchHHHHHHHhccc-C-----------CCceEEEecCHHHHHHHHH
Confidence 46667888999999988752 21 1 11355666655321 1 135655 79999999999
Q ss_pred hCCcee
Q 018250 274 RNGHFA 279 (359)
Q Consensus 274 ~~G~F~ 279 (359)
.+| |+
T Consensus 288 ~aG-F~ 292 (311)
T PF12147_consen 288 AAG-FE 292 (311)
T ss_pred HcC-Cc
Confidence 999 75
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.025 Score=51.44 Aligned_cols=117 Identities=18% Similarity=0.317 Sum_probs=58.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---------C---Ccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---------P---RKYYA 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---------~---~~~~~ 123 (359)
..++||...|||||-=.-.++--+- +..+.. ..-.++++..|+...-....-+.+. . ++||.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~----e~~~~~--~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~ 103 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLL----ELLPGA--LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFT 103 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHH----HHH-S---TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEE
T ss_pred CCCeEEEECCCCCChhHHHHHHHHH----HHhccc--CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhcc
Confidence 4689999999999965444432222 211111 1226899999997633332222221 1 24553
Q ss_pred cccCcc------------cc-----cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH
Q 018250 124 AGVPGS------------FH-----GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ 186 (359)
Q Consensus 124 ~~vpgs------------fy-----~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~ 186 (359)
...++. |- +...|.+.+|+|+|-..|-.++. +
T Consensus 104 ~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~-------------------------~------ 152 (196)
T PF01739_consen 104 ERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDP-------------------------E------ 152 (196)
T ss_dssp EE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-H-------------------------H------
T ss_pred ccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCH-------------------------H------
Confidence 333221 11 22346788999999888877542 1
Q ss_pred HHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 187 AQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 187 ~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.-...++.-++-|+|||.|++.-
T Consensus 153 -----~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 153 -----TQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -----HHHHHHHHHGGGEEEEEEEEE-T
T ss_pred -----HHHHHHHHHHHHcCCCCEEEEec
Confidence 11346667789999999987643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.25 Score=47.18 Aligned_cols=114 Identities=25% Similarity=0.409 Sum_probs=67.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh----------CCC---Ccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT----------LPP---RKYYA 123 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~----------l~~---~~~~~ 123 (359)
+++||--.|||||-=.-.++-.+.+.... . ....++++..|+-..-....-.. +|. ++||.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~----~--~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~ 169 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK----L--AGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFE 169 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc----c--cCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEe
Confidence 58999999999997655554333333322 0 23469999999865333322222 222 35666
Q ss_pred cccCcccc--------------cCCC---CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH
Q 018250 124 AGVPGSFH--------------GRLF---PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ 186 (359)
Q Consensus 124 ~~vpgsfy--------------~~l~---p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~ 186 (359)
-+..|+|- +.+. ..+-+|+|||=..|=++++ +++
T Consensus 170 ~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-------------------------~~q---- 220 (268)
T COG1352 170 RGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-------------------------ETQ---- 220 (268)
T ss_pred ecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-------------------------HHH----
Confidence 66555332 2222 3355888888666655442 121
Q ss_pred HHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 187 AQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 187 ~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+.++.-+.-|+|||.|++
T Consensus 221 -------~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 221 -------ERILRRFADSLKPGGLLFL 239 (268)
T ss_pred -------HHHHHHHHHHhCCCCEEEE
Confidence 2355667889999999865
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.22 Score=46.39 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=29.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNT 111 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~ 111 (359)
...+|+|+|||||..|..++ +. .--+|+..|...++...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~--------~~--------ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL--------QK--------GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH--------Hc--------CCCEEEEEeCCHHHHHH
Confidence 45689999999999999885 21 12479999998877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.031 Score=55.53 Aligned_cols=38 Identities=16% Similarity=-0.067 Sum_probs=25.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND 108 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND 108 (359)
+++.+||++|||+|.....++ +. .+..++...|+-...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelL--------k~-------~~v~~It~VEIDpeV 186 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVL--------KY-------ETVLHVDLVDLDGSM 186 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHH--------hc-------CCCCeEEEEeCCHHH
Confidence 456799999999998554443 21 123477888877643
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.044 Score=48.66 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=55.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------Ccccc--cccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RKYYA--AGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~~~~--~~vp 127 (359)
....+|++||||+|--++.+... . ....|++.|++. =...+-.++.. .++-+ .-.+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg 107 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG 107 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT
T ss_pred cCCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec
Confidence 34679999999999998888421 1 235899999987 33333333211 11111 1111
Q ss_pred cccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 128 gsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
.......+.+.++|+|+.+=++.+ .+.+..+++.-.+-|+|+
T Consensus 108 ~~~~~~~~~~~~~D~IlasDv~Y~--------------------------------------~~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 108 DELDSDLLEPHSFDVILASDVLYD--------------------------------------EELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp S-HHHHHHS-SSBSEEEEES--S---------------------------------------GGGHHHHHHHHHHHBTT-
T ss_pred CcccccccccccCCEEEEecccch--------------------------------------HHHHHHHHHHHHHHhCCC
Confidence 111122234456777777555554 123344666677889999
Q ss_pred ceeEEEeccCCC
Q 018250 208 GLMVFSLITGPS 219 (359)
Q Consensus 208 G~lvl~~~g~~~ 219 (359)
|.+++...-|..
T Consensus 150 ~~vl~~~~~R~~ 161 (173)
T PF10294_consen 150 GKVLLAYKRRRK 161 (173)
T ss_dssp TTEEEEEE-S-T
T ss_pred CEEEEEeCEecH
Confidence 997777766643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.13 Score=51.96 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=61.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C--c-ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R--K-YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~--~-~~~~~vpgsfy 131 (359)
..+|+|+|||+|..++..+ . ....+|+..|+.......+-+++.. . . .++. |+.+
T Consensus 221 g~rVLDlfsgtG~~~l~aa-------~---------~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~---~D~~ 281 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSAL-------M---------GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR---DDVF 281 (396)
T ss_pred CCeEEEeccCCCHHHHHHH-------h---------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE---ccHH
Confidence 3689999999999876542 1 0123778888776554433333211 0 1 1222 2332
Q ss_pred cCC--C--CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 132 GRL--F--PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 132 ~~l--~--p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+-+ + ...++|+|++ -|+.... ++ . + .....+++..+++.-.+-|+||
T Consensus 282 ~~l~~~~~~~~~fDlVil---------DPP~f~~------~k---------~---~--l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 282 KLLRTYRDRGEKFDVIVM---------DPPKFVE------NK---------S---Q--LMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred HHHHHHHhcCCCCCEEEE---------CCCCCCC------Ch---------H---H--HHHHHHHHHHHHHHHHHHcCCC
Confidence 221 1 2457888886 2332221 00 0 1 1134556777888888899999
Q ss_pred ceeEEEe
Q 018250 208 GLMVFSL 214 (359)
Q Consensus 208 G~lvl~~ 214 (359)
|.+++..
T Consensus 333 G~lv~~s 339 (396)
T PRK15128 333 GILLTFS 339 (396)
T ss_pred eEEEEEe
Confidence 9988655
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.13 Score=48.42 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=75.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHH-hCCC---CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFR-TLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~-~l~~---~~~~~~~vpgsfy~ 132 (359)
.-.||+|.|.|||..|..++.. . .|.-+|+--|.-. ||-...+ ++.. ..+ +.-.-|+..+
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~-------v-------g~~G~v~tyE~r~-d~~k~A~~Nl~~~~l~d~-v~~~~~Dv~~ 157 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARA-------V-------GPEGHVTTYEIRE-DFAKTARENLSEFGLGDR-VTLKLGDVRE 157 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHh-------h-------CCCceEEEEEecH-HHHHHHHHHHHHhccccc-eEEEeccccc
Confidence 3579999999999999988521 1 1344666666665 5554432 2221 111 1111156667
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
-.+++ .+|.+|- ++|. +|| .|..-++.|+|||.+++
T Consensus 158 ~~~~~-~vDav~L--------Dmp~--------PW~---------------------------~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 158 GIDEE-DVDAVFL--------DLPD--------PWN---------------------------VLEHVSDALKPGGVVVV 193 (256)
T ss_pred ccccc-ccCEEEE--------cCCC--------hHH---------------------------HHHHHHHHhCCCcEEEE
Confidence 77776 8888875 4554 222 57778999999999988
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhc
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKAR 254 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d 254 (359)
..+. .+.+...+..|-+.|.++.+.++
T Consensus 194 y~P~---------------veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 194 YSPT---------------VEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred EcCC---------------HHHHHHHHHHHHhcCccchhhhe
Confidence 8753 34555555665555665554443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.042 Score=51.23 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=27.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
++.+|+|+|||+|..++.++. .. .+..+++..|...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~--------~~------~~~g~v~tiD~d~ 103 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTAL--------AL------PEDGRITAIDIDK 103 (234)
T ss_pred CCCEEEEecCcccHHHHHHHH--------hC------CCCCEEEEEECCH
Confidence 467999999999999988752 21 2345888888876
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.26 Score=48.28 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=41.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy 131 (359)
...+|+|+|||+|.=|..+++.+. +. ...+..+--|+...-.....+.+.. ...-+.++.|+|.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~----~~-------~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALE----RQ-------KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH----hc-------CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 345899999999999998875543 11 1246889999987665555555552 1233445555653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.31 Score=47.79 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=61.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l 134 (359)
....|+|.|||+|..|+-.++.= ...||..... ++-.-.-+.+..+ .--+..+||--.+--
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC----------------cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc
Confidence 34678999999999998876431 1133333322 2222222222211 123566788776555
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+| +.+|+++| -|-+-. .+| ++=+..+|.+| +=|+|.|.|+=+.
T Consensus 240 LP-Ek~DviIS---------EPMG~m-----L~N---------------------ERMLEsYl~Ar-k~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 240 LP-EKVDVIIS---------EPMGYM-----LVN---------------------ERMLESYLHAR-KWLKPNGKMFPTV 282 (517)
T ss_pred Cc-hhccEEEe---------ccchhh-----hhh---------------------HHHHHHHHHHH-hhcCCCCcccCcc
Confidence 66 67899888 332211 111 24577889999 9999999997655
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.062 Score=51.17 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=43.2
Q ss_pred eeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhh
Q 018250 9 FPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQ 88 (359)
Q Consensus 9 ~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~ 88 (359)
+.|.|=.-..+|.+|-..+..+++.+...+ .. ....+|+|+|||+|..|..+++ ++
T Consensus 9 l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l--------~~-------~~~~~VLEiG~G~G~lt~~L~~--------~~- 64 (272)
T PRK00274 9 LERYGHRAKKSLGQNFLIDENILDKIVDAA--------GP-------QPGDNVLEIGPGLGALTEPLLE--------RA- 64 (272)
T ss_pred HHHcCCCCCcccCcCcCCCHHHHHHHHHhc--------CC-------CCcCeEEEeCCCccHHHHHHHH--------hC-
Confidence 344433334566666555555554433322 11 2346899999999999998853 21
Q ss_pred cCCCCCCCceEEecCCCCCchHHHHH
Q 018250 89 NLSLPVPDFQVFFNDHTENDFNTLFR 114 (359)
Q Consensus 89 ~~~~~~p~~~v~~nDLp~NDFn~lf~ 114 (359)
+ +|+.-|.-......+-+
T Consensus 65 ------~--~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 65 ------A--KVTAVEIDRDLAPILAE 82 (272)
T ss_pred ------C--cEEEEECCHHHHHHHHH
Confidence 1 66777777655554433
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.23 Score=45.24 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
..+|+|+|||+|..++.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 54 DARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CCEEEEcCCCccHHHHHHH
Confidence 3589999999999998653
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.086 Score=49.96 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=55.9
Q ss_pred ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 139 TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 139 s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
.+|.+.|++||.=.++-++ .+.+-|+.-..-|||||.|++......
T Consensus 158 ~~D~v~s~fcLE~a~~d~~----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLD----------------------------------EYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp SEEEEEEESSHHHH-SSHH----------------------------------HHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred chhhhhhhHHHHHHcCCHH----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 5999999999988664221 233456677889999999999887554
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 219 SGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
+.... ..-.+|...-+.+.++++|+++| |.|...+
T Consensus 204 t~Y~v------------------------------G~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 204 TYYMV------------------------------GGHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp SEEEE------------------------------TTEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred eeEEE------------------------------CCEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 42110 11236677789999999999999 9999888
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.8 Score=38.54 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHH
Q 018250 191 SDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELES 270 (359)
Q Consensus 191 ~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~ 270 (359)
+++-.+|..-.+-||||| +...+|.--- +. .++ + + -+-...-.|.||++.
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG--~WIN~GPLly----h~-------------~~~---~-~-------~~~~sveLs~eEi~~ 228 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGG--YWINFGPLLY----HF-------------EPM---S-I-------PNEMSVELSLEEIKE 228 (270)
T ss_pred HHHHHHHHHHHHHhccCC--EEEecCCccc----cC-------------CCC---C-C-------CCCcccCCCHHHHHH
Confidence 355668888999999999 3444443210 00 000 0 0 000114578999999
Q ss_pred HHHhCCceeEeEEEE
Q 018250 271 LIQRNGHFAMERMQQ 285 (359)
Q Consensus 271 ~i~~~G~F~i~~le~ 285 (359)
+++.-| |++++-+.
T Consensus 229 l~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 229 LIEKLG-FEIEKEES 242 (270)
T ss_pred HHHHCC-CEEEEEEE
Confidence 999999 99987666
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.13 Score=48.46 Aligned_cols=73 Identities=12% Similarity=-0.024 Sum_probs=45.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..|..+++ +. .+++.-|+-......+-+.+.. ..+ .-+-|++.+-.+|
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~--------~~---------~~v~~vEid~~~~~~l~~~~~~~~~v--~ii~~D~~~~~~~ 90 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK--------RA---------KKVYAIELDPRLAEFLRDDEIAAGNV--EIIEGDALKVDLP 90 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH--------hC---------CEEEEEECCHHHHHHHHHHhccCCCE--EEEEeccccCCch
Confidence 47899999999999998852 21 2577777766555544443321 111 1122455554444
Q ss_pred CCceeEEEecCcccc
Q 018250 137 KSTLHVVNSFNAMHW 151 (359)
Q Consensus 137 ~~s~d~~~S~~alHW 151 (359)
.+|.++||...++
T Consensus 91 --~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 --EFNKVVSNLPYQI 103 (258)
T ss_pred --hceEEEEcCCccc
Confidence 4689999877765
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.55 Score=43.03 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=13.9
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
.-+++|||||.|.-.+..+
T Consensus 43 ~dvF~DlGSG~G~~v~~aa 61 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAA 61 (205)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
Confidence 4688999999999776654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.14 Score=49.48 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.5
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~ 77 (359)
..+|+|+|||+|..|..++.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~ 56 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQ 56 (294)
T ss_pred cCEEEEecCchHHHHHHHHH
Confidence 46899999999999998864
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.48 Score=48.35 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=41.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG- 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~- 132 (359)
..+|+|+|||+|..|+.++. .. .+|+..|.........-++... .. -|+. +++.+
T Consensus 298 ~~~VLDlgcGtG~~sl~la~--------~~---------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~---~d~~~~ 357 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR--------QA---------AEVVGVEGVEAMVERARENARRNGLDNVTFYH---ANLEED 357 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH--------hC---------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEE---eChHHh
Confidence 46899999999999998752 11 3677788776665544433211 11 1222 23322
Q ss_pred ---CCCCCCceeEEEe
Q 018250 133 ---RLFPKSTLHVVNS 145 (359)
Q Consensus 133 ---~l~p~~s~d~~~S 145 (359)
..++++++|++++
T Consensus 358 l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 358 FTDQPWALGGFDKVLL 373 (443)
T ss_pred hhhhhhhcCCCCEEEE
Confidence 1245678899877
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.56 Score=46.24 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=16.9
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~ 76 (359)
+++.+|+.+|+|.|..+..++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 456799999999998776664
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.7 Score=43.34 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.6
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
+..+|+|+|||+|..|..+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~ 48 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLL 48 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHH
Confidence 35789999999999999885
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.27 Score=48.22 Aligned_cols=75 Identities=7% Similarity=0.001 Sum_probs=42.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----Ccc--cccccCcc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKY--YAAGVPGS 129 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~--~~~~vpgs 129 (359)
...+|+|||||+|.....+. .+ .+..+++..|+-..-....-+++.. .++ .....++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa--------~~-------~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG--------VH-------EYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCceEEEecCCccHHHHHHH--------hh-------CCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 46899999999997666553 12 1345788888754333332222211 111 12233344
Q ss_pred cccCC-CCCCceeEEEec
Q 018250 130 FHGRL-FPKSTLHVVNSF 146 (359)
Q Consensus 130 fy~~l-~p~~s~d~~~S~ 146 (359)
.+..+ .+.+.+|+++|+
T Consensus 179 i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 179 IFKGIIHKNERFDATLCN 196 (321)
T ss_pred hhhcccccCCceEEEEeC
Confidence 44433 478899999993
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=6 Score=37.79 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhC
Q 018250 196 ILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRN 275 (359)
Q Consensus 196 fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~ 275 (359)
.+..-...|.||..|+++-...+.. + ...+.+...+. .-..|.+.+|.+|+...+.
T Consensus 172 iv~~l~d~lapGS~L~ish~t~d~~-p-------~~~~~~~~~~~--------------~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 172 IVARLRDALAPGSYLAISHATDDGA-P-------ERAEALEAVYA--------------QAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp HHHHHHCCS-TT-EEEEEEEB-TTS-H-------HHHHHHHHHHH--------------HCCS----B-HHHHHHCCT--
T ss_pred HHHHHHHhCCCCceEEEEecCCCCC-H-------HHHHHHHHHHH--------------cCCCCceecCHHHHHHHcC--
Confidence 3444457899999999999865431 1 01122222222 2356889999999999876
Q ss_pred CceeEe
Q 018250 276 GHFAME 281 (359)
Q Consensus 276 G~F~i~ 281 (359)
| |++.
T Consensus 228 g-~elv 232 (267)
T PF04672_consen 228 G-LELV 232 (267)
T ss_dssp T-SEE-
T ss_pred C-CccC
Confidence 6 7663
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.1 Score=35.51 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHhhccCceeEEEeccCCC
Q 018250 196 ILNARAEELVPGGLMVFSLITGPS 219 (359)
Q Consensus 196 fL~~Ra~EL~pGG~lvl~~~g~~~ 219 (359)
.+....+-|+|||.+++.......
T Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 137 ALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCC
Confidence 455667789999999999987664
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.92 Score=43.06 Aligned_cols=96 Identities=16% Similarity=0.290 Sum_probs=57.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+++|||.|.|.-|..+. ..+. +|+..++...|=..|-+ +.|=+..+- +..+ -
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~--------~~f~---------~v~aTE~S~~Mr~rL~~----kg~~vl~~~-~w~~---~ 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA--------PLFK---------EVYATEASPPMRWRLSK----KGFTVLDID-DWQQ---T 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHH--------hhcc---------eEEeecCCHHHHHHHHh----CCCeEEehh-hhhc---c
Confidence 46789999999999999884 2221 46666666555333322 111111100 1111 1
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+..+|+|-|.+-|-=+.+ |. +.|+.-.+.|+|+|++++...
T Consensus 149 ~~~fDvIscLNvLDRc~~-P~-------------------------------------~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDR-PL-------------------------------------TLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCceEEEeehhhhhccCC-HH-------------------------------------HHHHHHHHHhCCCCEEEEEEE
Confidence 346899888776655433 21 356666779999999999875
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.8 Score=44.66 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=69.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccccc-cccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYA-AGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~-~~vpgsfy~~ 133 (359)
..+|+|++||.|.=|..+++ ... .+-.++.||...+-...|-.++.. ..+-+ ..-+..+ ..
T Consensus 114 g~~VLD~CAAPGgKTt~la~--------~l~------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~ 178 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAA--------LMN------NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GA 178 (470)
T ss_pred CCEEEEeCCCccHHHHHHHH--------HcC------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hh
Confidence 47899999999999998853 221 123799999988777777666543 11111 1112111 12
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
.+| +++|.|.- ++|+.=.. .+ + ..|+.. ...-++..+--..+|..-++-|+|||+
T Consensus 179 ~~~-~~fD~ILv--------DaPCSG~G---------~~--r-k~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~ 237 (470)
T PRK11933 179 ALP-ETFDAILL--------DAPCSGEG---------TV--R-KDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT 237 (470)
T ss_pred hch-hhcCeEEE--------cCCCCCCc---------cc--c-cCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 233 45777763 34443211 00 0 012221 111222333445788888899999999
Q ss_pred eEEEecc
Q 018250 210 MVFSLIT 216 (359)
Q Consensus 210 lvl~~~g 216 (359)
||-++..
T Consensus 238 LVYSTCT 244 (470)
T PRK11933 238 LVYSTCT 244 (470)
T ss_pred EEEECCC
Confidence 9888754
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.57 Score=45.55 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=27.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTL 112 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l 112 (359)
..+|+|+|||+|..|+.+++ + ..+|+..|+........
T Consensus 174 ~~~VLDl~cG~G~~sl~la~--------~---------~~~V~gvD~s~~av~~A 211 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT--------P---------GMQLTGIEISAEAIACA 211 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh--------c---------CCEEEEEeCCHHHHHHH
Confidence 36899999999999988852 1 23778888776555443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=88.43 E-value=3 Score=43.41 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=28.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND 108 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND 108 (359)
...+|+|.|||+|...+.++..+.. . .....-+..++..|+-..-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~----~---~~~~~~~~~i~g~DId~~a 75 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE----I---NYFKEVELNIYFADIDKTL 75 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh----c---CCcccceeeeeeechhHHH
Confidence 4679999999999998888654321 1 0001124677888875533
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=88.32 E-value=4.1 Score=38.91 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=42.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC----CCCcccccccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL----PPRKYYAAGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l----~~~~~~~~~vpgsfy 131 (359)
-.+.+|+|+|||.|.-+... .+.++. -.+++.-|....+ ..+-+.| +.... ......++
T Consensus 32 f~P~~vLD~GsGpGta~wAa--------~~~~~~------~~~~~~vd~s~~~-~~l~~~l~~~~~~~~~--~~~~~~~~ 94 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAA--------REVWPS------LKEYTCVDRSPEM-LELAKRLLRAGPNNRN--AEWRRVLY 94 (274)
T ss_pred CCCceEEEecCChHHHHHHH--------HHHhcC------ceeeeeecCCHHH-HHHHHHHHhccccccc--chhhhhhh
Confidence 35789999999999755433 344431 2467778865433 3333333 21110 00112333
Q ss_pred cCCCCCCceeEEEecCccccc
Q 018250 132 GRLFPKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWL 152 (359)
....+-..-|+++++++|-=|
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL 115 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNEL 115 (274)
T ss_pred cccccCCCCcEEEEehhhhcC
Confidence 222222233999999998644
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.80 E-value=0.29 Score=44.26 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.8
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
+.-+|+|+|||||..++...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHH
Confidence 34579999999999998773
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.6 Score=41.56 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=42.6
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQN------------IIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF 113 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~------------ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 113 (359)
.-+|+++|+|.|..|..+++. ++..++++.. ....++++..|.-.-||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhc
Confidence 689999999999999999987 6666666643 245789999999988888765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=0.94 Score=41.99 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=44.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsf 130 (359)
.++-+|+++|.+.|..|+.++. .. +.+..++-.|..+......-+.+.. .++ .+.+ |+-
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~--------~l------~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~--gda 121 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMAL--------AL------PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG--GDA 121 (219)
T ss_pred cCCceEEEeecccCHHHHHHHh--------hC------CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec--CcH
Confidence 4678999999999999998852 21 1145888888877544443333332 121 1111 333
Q ss_pred ccCC--CCCCceeEEEe
Q 018250 131 HGRL--FPKSTLHVVNS 145 (359)
Q Consensus 131 y~~l--~p~~s~d~~~S 145 (359)
-+.+ +..+++|++|-
T Consensus 122 l~~l~~~~~~~fDliFI 138 (219)
T COG4122 122 LDVLSRLLDGSFDLVFI 138 (219)
T ss_pred HHHHHhccCCCccEEEE
Confidence 3222 45678888875
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.85 Score=38.85 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=28.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
....+|+|+|||.|..|+.+.. .+... .+..+|+.-|.-.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~--------~l~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH--------LLCNS---SPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH--------HHHhc---CCCCeEEEEECCc
Confidence 4579999999999999999963 11111 2457888888654
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.30 E-value=0.25 Score=40.73 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=32.4
Q ss_pred eeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 140 LHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 140 ~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+|+|.|.+...| ||... ...-+..||+.-++-|+|||+|++.--
T Consensus 2 yDvilclSVtkW--------------------IHLn~------------GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------------IHLNW------------GDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES-HHH--------------------HHHHH------------HHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEeeEE--------------------EEecC------------cCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 699999999999 33222 223477899999999999999999864
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.6 Score=43.82 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=44.7
Q ss_pred CccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCC
Q 018250 16 GTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVP 95 (359)
Q Consensus 16 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p 95 (359)
+.-.|+-|...-+.+...+...+.. ..+..+|+|++||+|..++.++ ... +
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~--------------~~~~~~vLDl~aGsG~~~l~~a--------~~~-------~ 80 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGP--------------KLPRESVLDALSASGIRGIRYA--------LET-------G 80 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHh--------------hcCCCEEEECCCcccHHHHHHH--------HHC-------C
Confidence 4568888877777655544444321 1124689999999999999884 111 1
Q ss_pred CceEEecCCCCCchHHHHH
Q 018250 96 DFQVFFNDHTENDFNTLFR 114 (359)
Q Consensus 96 ~~~v~~nDLp~NDFn~lf~ 114 (359)
..+|+.+|.-.+-...+-+
T Consensus 81 ~~~V~a~Din~~Av~~a~~ 99 (382)
T PRK04338 81 VEKVTLNDINPDAVELIKK 99 (382)
T ss_pred CCEEEEEeCCHHHHHHHHH
Confidence 2378999987644443333
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=1.8 Score=37.01 Aligned_cols=20 Identities=15% Similarity=-0.037 Sum_probs=15.3
Q ss_pred cceEEEeecCCCCc-ccHHHH
Q 018250 57 YTVRIADLGCSVGP-NTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~-nt~~~~ 76 (359)
+..+|+|+|||+|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 35789999999996 555553
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.4 Score=42.13 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhccCceeEEEe
Q 018250 193 FESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 193 ~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+..+|..-.+-|||||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888899999999999864
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.9 Score=43.62 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=18.0
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
++-+|+|+||++|..|+.++
T Consensus 118 ~ak~VLEIGT~tGySal~lA 137 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVA 137 (278)
T ss_pred CCCeEEEecCCCCHHHHHHH
Confidence 46799999999999999885
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=85.32 E-value=0.9 Score=42.86 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=26.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
++-+|+++|+++|..|+.++.. . +++-+++--|...
T Consensus 79 ~ak~iLEiGT~~GySal~la~a--------l------~~~g~v~tiE~~~ 114 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALA--------L------PEDGKILAMDINR 114 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhh--------C------CCCCEEEEEeCCH
Confidence 4679999999999999988521 1 2345777777754
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.6 Score=42.02 Aligned_cols=131 Identities=12% Similarity=0.170 Sum_probs=62.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh--CCC--CcccccccCcc-c
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT--LPP--RKYYAAGVPGS-F 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~--l~~--~~~~~~~vpgs-f 130 (359)
....+|+|-.||+|..-+..+..+.+.-.+ .++.+++..|+-.......-.. +.. ...+- ...++ |
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~-i~~~d~l 115 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN-IIQGDSL 115 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE-EEES-TT
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecCcHHHHHHHHhhhhhhcccccccc-ccccccc
Confidence 346789999999999888776554432111 2467899888854332211111 111 11000 11123 3
Q ss_pred ccCCCC-CCceeEEEecCc--cc-ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 131 HGRLFP-KSTLHVVNSFNA--MH-WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 131 y~~l~p-~~s~d~~~S~~a--lH-WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
....+. ...+|+|+++-- .. | ........ .-|.++ .++.. ..|+ .|+..--+-|++
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~--~~~~~~------~~~~~--------~~~~-~Fi~~~l~~Lk~ 175 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKD--ERFKKY------FPPKS--------NAEY-AFIEHALSLLKP 175 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES----STGGGCTT--CCCTTC------SSSTT--------EHHH-HHHHHHHHTEEE
T ss_pred cccccccccccccccCCCCcccccc---cccccccc--cccccc------CCCcc--------chhh-hhHHHHHhhccc
Confidence 233333 678999999621 11 3 00001000 001111 11110 1122 278888899999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||++++.++
T Consensus 176 ~G~~~~Ilp 184 (311)
T PF02384_consen 176 GGRAAIILP 184 (311)
T ss_dssp EEEEEEEEE
T ss_pred ccceeEEec
Confidence 999999886
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=82.60 E-value=3.6 Score=38.86 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.6
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ 78 (359)
-.+|++-|.|+|..|..++..
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~ 61 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARA 61 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHH
Confidence 579999999999999999743
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.68 E-value=1.9 Score=42.95 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=63.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------CcccccccCccccc
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RKYYAAGVPGSFHG 132 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~~~~~~vpgsfy~ 132 (359)
..++|+||+-|+-+..+. .++. .++ .|+-.|.+.-.-...-. +.+.. +-+.|-+
T Consensus 112 ~~~~~~~~g~~~~~~~i~---------~f~~-------~~~--~Gl~~n~~e~~~~~~~~~~~~l~~k~~~--~~~~~~~ 171 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIA---------VFKK-------AGV--VGLDNNAYEAFRANELAKKAYLDNKCNF--VVADFGK 171 (364)
T ss_pred ccccccCcCcCchhHHHH---------Hhcc-------CCc--cCCCcCHHHHHHHHHHHHHHHhhhhcce--ehhhhhc
Confidence 378999999999888772 2221 122 34444554322111111 12222 4458888
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+|+++.+|++.+.-+.+..++ -.++|+++ .+.++|||+++.
T Consensus 172 ~~fedn~fd~v~~ld~~~~~~~--------------------------~~~~y~Ei------------~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 172 MPFEDNTFDGVRFLEVVCHAPD--------------------------LEKVYAEI------------YRVLKPGGLFIV 213 (364)
T ss_pred CCCCccccCcEEEEeecccCCc--------------------------HHHHHHHH------------hcccCCCceEEe
Confidence 8999999999999888777443 12344443 356999999998
Q ss_pred EeccCC
Q 018250 213 SLITGP 218 (359)
Q Consensus 213 ~~~g~~ 218 (359)
.-..+.
T Consensus 214 ~e~i~~ 219 (364)
T KOG1269|consen 214 KEWIKT 219 (364)
T ss_pred HHHHHh
Confidence 776443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=80.45 E-value=4.2 Score=41.18 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
..+|+|+|||+|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999885
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 359 | ||||
| 1m6e_X | 359 | Crystal Structure Of Salicylic Acid Carboxyl Methyl | 4e-42 | ||
| 2eg5_A | 372 | The Structure Of Xanthosine Methyltransferase Lengt | 8e-41 | ||
| 3b5i_A | 374 | Crystal Structure Of Indole-3-Acetic Acid Methyltra | 1e-39 | ||
| 2efj_A | 384 | The Structure Of 1,7 Dimethylxanthine Methyltransfe | 6e-37 |
| >pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359 | Back alignment and structure |
|
| >pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374 | Back alignment and structure |
|
| >pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 359 | |||
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 3e-87 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 2e-84 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 4e-84 |
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374 | Back alignment and structure |
|---|
Score = 267 bits (683), Expect = 3e-87
Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 33/382 (8%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M ++ + M GG G SYA+NS Q + L+ E + N S +
Sbjct: 1 MKLERL--LSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSS---ASPPPFT 55
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--- 117
DLGCS G NT + I++ + +F + P+F FF+D NDFNTLF+ LP
Sbjct: 56 AVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLV 115
Query: 118 -------------PRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKS 164
R Y+ AGVPGSF+ RLFP T+ +S ++HWLS+ P+ +S
Sbjct: 116 SNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRS 175
Query: 165 LEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFA 224
+N+G + + ++ QF++D L ARA E+ GG M + S P
Sbjct: 176 AAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTD 235
Query: 225 DTVQGATYN-FLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM 283
G + DL + G+++ EK FN+P Y P +++ + ++ NG FA++++
Sbjct: 236 QGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL 295
Query: 284 QQLDQPMRHKT-------FPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEIL 336
+ + S R+V L+ H GEEL +F+ +
Sbjct: 296 VVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRV----ESRA 351
Query: 337 SIHNGKLHKEIEVFVVLKRISK 358
+ H + ++ F ++ +S
Sbjct: 352 TSHAKDVLVNLQFFHIVASLSF 373
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359 | Back alignment and structure |
|---|
Score = 259 bits (662), Expect = 2e-84
Identities = 115/371 (30%), Positives = 171/371 (46%), Gaps = 31/371 (8%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M V +V M GG G SYA NS QR + K + AI + + +
Sbjct: 1 MDVRQV--LHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDT----VTTRLA 54
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLSL-PVPDFQVFFNDHTENDFNTLFRTLPP- 118
IADLGCS GPN +V +I+ +E + + P++Q+F ND NDFN +FR+LP
Sbjct: 55 IADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE 114
Query: 119 ----RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKC 174
+ GVPGSF+GRLFP++TLH ++S ++ WLS+ P K + +
Sbjct: 115 NDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCP- 173
Query: 175 TRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNF 234
+ V + QF+ D L RA+E+VPGG MV +++ S T +
Sbjct: 174 ----QSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRA-STECCLIWQL 228
Query: 235 LGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQP----- 289
L L + G+I EEK FN+P Y P E+E+ I + G F ++ ++ +
Sbjct: 229 LAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCT 288
Query: 290 -----MRHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLH 344
+RAV E L+ HFGE ++E++F+ E +S K
Sbjct: 289 KDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKF- 347
Query: 345 KEIEVFVVLKR 355
I V V L R
Sbjct: 348 --INVIVSLIR 356
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384 | Back alignment and structure |
|---|
Score = 259 bits (662), Expect = 4e-84
Identities = 103/390 (26%), Positives = 176/390 (45%), Gaps = 48/390 (12%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M + EV M GG+G SYA NS + + K ++ + I L + +
Sbjct: 1 MELQEV--LHMNGGEGDTSYAKNSSYNL-FLIRVKPVLEQCIQELLRANLPNINK--CFK 55
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNL--SLPVPDFQVFFNDHTENDFNTLFRTLPP 118
+ DLGC+ GPNTF +V++I+++++ Q L P Q+F ND +NDFN++F+ LP
Sbjct: 56 VGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPS 115
Query: 119 RK-------------YYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSL 165
+PGSF+ RLFP+ ++H ++S +HWLS+ P + E +
Sbjct: 116 FYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGI 175
Query: 166 EWNQGSIKCTRFM-KGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFA 224
N+G I ++ + + + QF DF + L +EEL+ G M+ + I
Sbjct: 176 SVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDH- 234
Query: 225 DTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284
+ + L + DL G + EEK +FNVP Y P EE++ +++ G F + ++
Sbjct: 235 ----PNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290
Query: 285 QLDQPMRHKTFP-------------------AQFYLSHLRAVLEGLIGKHFGEELLENIF 325
+ P A S +R++ E ++ HFGE +L ++
Sbjct: 291 TFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLS 350
Query: 326 NHINTKEAEILSIHNGKLHKEIEVFVVLKR 355
+ I A++L G V + L +
Sbjct: 351 HRIAKNAAKVLRSGKGFY---DSVIISLAK 377
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 359 | |||
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 100.0 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 100.0 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 100.0 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.68 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.68 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.45 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.42 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.36 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.35 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.33 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.32 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.31 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.29 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.28 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.28 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.27 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.27 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.27 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.26 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.25 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.25 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.25 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.24 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.23 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.21 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.18 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.18 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.18 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.17 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.15 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.14 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.13 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.13 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.13 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.12 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.12 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.12 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.12 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.1 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.1 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.09 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.08 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.07 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.06 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.05 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.03 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.03 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.01 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.01 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.01 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.01 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.0 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.99 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.99 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.99 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.98 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.98 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.96 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.96 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.95 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.94 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.94 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.94 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.94 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.94 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.94 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.93 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.9 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.9 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.89 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.88 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.88 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.88 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.87 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.87 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.86 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.85 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.85 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.83 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.82 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.79 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.79 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.78 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.77 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.74 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.74 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.73 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.72 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.72 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.72 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.71 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.71 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.68 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.66 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.66 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.65 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.65 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.61 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.58 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.58 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.55 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.52 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.5 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.46 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.44 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.44 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.43 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.42 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.41 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.41 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.33 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.33 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.32 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.32 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.31 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.3 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.3 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.29 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.29 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.24 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.23 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.23 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.23 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.22 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.22 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.2 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.2 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.2 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.17 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.17 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.17 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.15 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.14 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.13 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.12 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.12 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.12 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.09 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.08 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.08 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.07 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.07 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.06 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.06 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.05 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.05 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 97.97 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 97.96 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.94 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 97.93 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 97.93 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.93 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.92 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 97.91 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.91 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.9 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.9 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.87 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.86 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.85 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.85 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 97.83 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 97.83 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.83 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.82 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.81 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.81 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.8 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.8 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 97.78 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.77 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 97.75 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 97.74 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.7 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.68 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.68 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.67 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.66 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 97.66 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 97.66 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.65 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 97.62 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 97.62 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.62 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 97.61 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.6 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.59 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.59 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.58 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.56 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 97.54 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.5 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.5 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.5 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.46 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.45 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 97.41 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.41 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 97.37 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.34 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.33 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.31 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.31 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.31 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 97.3 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.3 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 97.29 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.28 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.27 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.26 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 97.26 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.25 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.23 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.2 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 97.18 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 97.17 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.14 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.14 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.13 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.1 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 97.1 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.09 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.07 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 97.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 96.92 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.91 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.88 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 96.82 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 96.8 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 96.76 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 96.73 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 96.72 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 96.66 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 96.65 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 96.58 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 96.51 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 96.5 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 96.44 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 96.29 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 96.22 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 96.08 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 95.94 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 95.91 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 95.91 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 95.87 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 95.82 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 95.78 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 95.58 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 95.44 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 95.32 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 95.16 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 94.96 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 94.94 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 94.64 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 94.5 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 94.37 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 94.37 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 94.3 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 94.25 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 94.25 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 94.14 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 93.91 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 93.32 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 92.54 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 91.54 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 91.42 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 91.36 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 91.31 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 91.26 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 90.25 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 90.18 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 89.56 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 85.77 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 85.33 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 84.62 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 83.99 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 82.59 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 82.39 |
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-92 Score=687.29 Aligned_cols=340 Identities=34% Similarity=0.531 Sum_probs=308.0
Q ss_pred ccc-eeeeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHH
Q 018250 4 DEV-VTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEA 82 (359)
Q Consensus 4 ~~~-~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~ 82 (359)
|++ ++|||+||+|++||++||.+|++++..++|++++||.+++.... .+++++|||||||+|+||+.+++.||++
T Consensus 1 m~~~~~~~m~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~----~~~~~~IaDlGCs~G~Nt~~~v~~ii~~ 76 (359)
T 1m6e_X 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDT----VTTRLAIADLGCSSGPNALFAVTELIKT 76 (359)
T ss_dssp CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSS----SSSEECCEEESCCSSTTTTTGGGTTHHH
T ss_pred CCcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCCceEEEecCCCCCcchHHHHHHHHHH
Confidence 344 67999999999999999999999999999999999998664211 2578999999999999999999999999
Q ss_pred HHHHhhcCCC-CCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCcccccCCCCCCceeEEEecCcccccCCCC
Q 018250 83 LEFKFQNLSL-PVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTP 156 (359)
Q Consensus 83 ~~~~~~~~~~-~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p 156 (359)
|+++|.+.+. +.|++||++||||+||||+||++|+. .+||++|||||||+||||++|+|++||++||||||++|
T Consensus 77 i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p 156 (359)
T 1m6e_X 77 VEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP 156 (359)
T ss_dssp HHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCC
T ss_pred HHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCc
Confidence 9999976654 68999999999999999999999985 46999999999999999999999999999999999999
Q ss_pred cccccccccccCCCceeecCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHH
Q 018250 157 KVNMLEKSLEWNQGSIKCTRF-MKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFL 235 (359)
Q Consensus 157 ~~~~~~~~~~~n~g~i~~~~~-~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l 235 (359)
+.+.+ |||+|||+++ ||+|.+||++||++||..||++|++||||||+||++++|+++.++.++. .+.+|+.|
T Consensus 157 ~~l~~------nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~-~~~~~~~l 229 (359)
T 1m6e_X 157 IGIES------NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTE-CCLIWQLL 229 (359)
T ss_dssp SCCCC------CTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTT-TSTTTHHH
T ss_pred hhhhc------cCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccc-hHHHHHHH
Confidence 99887 9999999865 7889999999999999999999999999999999999999998766553 45678999
Q ss_pred HHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCC----------CChhHHHHHHH
Q 018250 236 GSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKT----------FPAQFYLSHLR 305 (359)
Q Consensus 236 ~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~----------~~~~~v~~~iR 305 (359)
.++|++||.+|+|+++++|+|++|||+||.+||+++|+++|+|+|+++|.+++.....+ ..++.+++++|
T Consensus 230 ~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~~d~~~~~~~~g~~~a~~~R 309 (359)
T 1m6e_X 230 AMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMR 309 (359)
T ss_dssp HHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHH
T ss_pred HHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccchhhhhhhhhHhHhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999865322110 23578999999
Q ss_pred HHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEecc
Q 018250 306 AVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRIS 357 (359)
Q Consensus 306 a~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 357 (359)
|+.+|++.+|||++++|++|+||++++.++++. ...++++++++|+|+.
T Consensus 310 a~~e~ll~~hfG~~i~d~lf~ry~~~~~~~~~~---~~~~~~~~~~~L~k~~ 358 (359)
T 1m6e_X 310 AVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSK---EKTKFINVIVSLIRKS 358 (359)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS---SCCEEEEEEEEEEBCC
T ss_pred hhcchhhHHhccHHHHHHHHHHHHHHHHHHHhh---CCCceEEEEEEEEeCC
Confidence 999999999999999999999999999998875 4578999999999985
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-91 Score=687.55 Aligned_cols=339 Identities=29% Similarity=0.527 Sum_probs=289.1
Q ss_pred eeeeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 018250 7 VTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFK 86 (359)
Q Consensus 7 ~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~ 86 (359)
++|||+||+|++||++||. |++++..++|++++||.+++.. ..| ...++++|||||||+|+||+.+++.||++|+++
T Consensus 5 ~~~~M~gg~G~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~-~~~-~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~~~ 81 (384)
T 2efj_A 5 EVLHMNGGEGDTSYAKNSS-YNLFLIRVKPVLEQCIQELLRA-NLP-NINKCFKVGDLGCASGPNTFSTVRDIVQSIDKV 81 (384)
T ss_dssp TTCCCCC----CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHT-TCT-TTTTEEEEEEETCCSSHHHHHHHHHHHHHHTCC
T ss_pred cccccCCCCChhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhc-ccC-CcCCceEEEecCCCCCchHHHHHHHHHHHHHHH
Confidence 6799999999999999999 9999999999999999986532 111 012389999999999999999999999999998
Q ss_pred hhc--CCCCCCCceEEecCCCCCchHHHHHhCCC-------------CcccccccCcccccCCCCCCceeEEEecCcccc
Q 018250 87 FQN--LSLPVPDFQVFFNDHTENDFNTLFRTLPP-------------RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHW 151 (359)
Q Consensus 87 ~~~--~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------------~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHW 151 (359)
|.+ .+.+.|++||++||||+||||+||++||. .+||++|||||||+||||++|+|++||++||||
T Consensus 82 ~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHW 161 (384)
T 2efj_A 82 GQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHW 161 (384)
T ss_dssp ----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTB
T ss_pred hhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEecceeee
Confidence 865 33457899999999999999999999973 269999999999999999999999999999999
Q ss_pred cCCCCcccccccccccCCCceeecCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCC--CCCCCcch
Q 018250 152 LSKTPKVNMLEKSLEWNQGSIKCTRF-MKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSG--IPFADTVQ 228 (359)
Q Consensus 152 Ls~~p~~~~~~~~~~~n~g~i~~~~~-~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~--~~~~~~~~ 228 (359)
||++|+.+.++.+++||||+|||+++ ||+|.++|++||++||..||++|++||||||+||++++|+++. .+.+
T Consensus 162 ls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~---- 237 (384)
T 2efj_A 162 LSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNS---- 237 (384)
T ss_dssp CSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCH----
T ss_pred cCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCccc----
Confidence 99999999999999999999999865 7889999999999999999999999999999999999999986 5432
Q ss_pred hHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCC---C-----------
Q 018250 229 GATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHK---T----------- 294 (359)
Q Consensus 229 ~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~---~----------- 294 (359)
.+.|.++|++||.+|+|+++++|+|++|+|+||.+||+++|+++|+|+|+++|.++...... +
T Consensus 238 ---~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~~~~~~~~~~~~~~~~~ 314 (384)
T 2efj_A 238 ---MDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPV 314 (384)
T ss_dssp ---HHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTTTCCC---------CCS
T ss_pred ---HHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccccccccccccccccccc
Confidence 14899999999999999999999999999999999999999999999999999986432211 0
Q ss_pred -----CChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEeccC
Q 018250 295 -----FPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRISK 358 (359)
Q Consensus 295 -----~~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~ 358 (359)
..++.+++++||+++|++.+|||++++|+||+||++++.++++. ...++++++++|+|+..
T Consensus 315 ~~d~~~~g~~~a~~iRa~~epll~~hfG~~i~d~lF~ry~~~~~~~~~~---~~~~~~~~~~~L~k~~~ 380 (384)
T 2efj_A 315 SCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKVLRS---GKGFYDSVIISLAKKPE 380 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHH---TCCEEEEEEEEEEECC-
T ss_pred cchHhHhHHHhhhhhHHhhhhhhHHhccHHHHHHHHHHHHHHHHHHHhh---CCCceEEEEEEEEEccc
Confidence 11358899999999999999999999999999999999999885 45789999999999864
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-90 Score=677.12 Aligned_cols=347 Identities=29% Similarity=0.482 Sum_probs=291.9
Q ss_pred ccc-eeeeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHH
Q 018250 4 DEV-VTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEA 82 (359)
Q Consensus 4 ~~~-~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~ 82 (359)
|++ ++|||+||+|++||++||.+|++++..++|++++||+++. .... ..+++++|||||||+|+||+.+++.||++
T Consensus 1 m~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~-~~~~--~~~~~~~IaDlGCssG~Nt~~~v~~ii~~ 77 (374)
T 3b5i_A 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVH-LNSS--ASPPPFTAVDLGCSSGANTVHIIDFIVKH 77 (374)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHTSC-CCCS--SSCCCEEEEEETCCSSHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhh-cccc--CCCCceEEEecCCCCChhHHHHHHHHHHH
Confidence 344 6799999999999999999999999999999999998743 3210 02568999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----------------CcccccccCcccccCCCCCCceeEEEec
Q 018250 83 LEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----------------RKYYAAGVPGSFHGRLFPKSTLHVVNSF 146 (359)
Q Consensus 83 ~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----------------~~~~~~~vpgsfy~~l~p~~s~d~~~S~ 146 (359)
|++++...+.++|++||++||||+||||+||++|+. .+||++|||||||+||||++|+|++||+
T Consensus 78 i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss 157 (374)
T 3b5i_A 78 ISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSA 157 (374)
T ss_dssp HHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred HHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEec
Confidence 999998766678999999999999999999999985 2489999999999999999999999999
Q ss_pred CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCc
Q 018250 147 NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADT 226 (359)
Q Consensus 147 ~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~ 226 (359)
+||||||++|+.+.++.+++||||+|||++++|+|.+||++||++||..||++|++||||||+||++++|+++..+.++.
T Consensus 158 ~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~ 237 (374)
T 3b5i_A 158 FSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQG 237 (374)
T ss_dssp SCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCH
T ss_pred ceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCcccccc
Confidence 99999999999999999999999999999988779999999999999999999999999999999999999998777666
Q ss_pred chhHHH-HHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCC-------CChh
Q 018250 227 VQGATY-NFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKT-------FPAQ 298 (359)
Q Consensus 227 ~~~~~~-~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~-------~~~~ 298 (359)
+.+.+| +.|.++|++|+.+|+++++++|+|++|+|+||.+|++++|+++|+|+|++++.++++.+... ..++
T Consensus 238 ~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~~~~~~~~g~ 317 (374)
T 3b5i_A 238 GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGR 317 (374)
T ss_dssp HHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSSTTCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccccchhHHHHH
Confidence 666778 89999999999999999999999999999999999999999877799999999986543221 1246
Q ss_pred HHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcc--eEEEEEEEE
Q 018250 299 FYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHK--EIEVFVVLK 354 (359)
Q Consensus 299 ~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 354 (359)
.+++++||+.+|++.+|||++++|++|+||+++++++++.+. +.++ +++++|+|+
T Consensus 318 ~~a~~~Ra~~e~ll~~hfg~~i~d~lf~ry~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 374 (374)
T 3b5i_A 318 AFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAKDVL-VNLQFFHIVASLSFT 374 (374)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTCHHHH-TTCCCEEEEEEEEEC
T ss_pred HHHHHHHHhccchhHhhccHHHHHHHHHHHHHHHHHhHHHhh-hccccceEEEEEEeC
Confidence 899999999999999999999999999999999999988654 3455 899999985
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-17 Score=150.10 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=150.6
Q ss_pred eccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhc
Q 018250 10 PMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQN 89 (359)
Q Consensus 10 ~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~ 89 (359)
.|...-.+..|++++..|......+...+ . .....+|+|+|||+|..+..++ +
T Consensus 25 ~~~~~w~a~~y~~~~~~~~~~~~~l~~~l--------~-------~~~~~~vLDiGcG~G~~~~~l~--------~---- 77 (279)
T 3ccf_A 25 TAKNFWDATLYQDKHSFVWQYGEDLLQLL--------N-------PQPGEFILDLGCGTGQLTEKIA--------Q---- 77 (279)
T ss_dssp ----------------CCSSSCCHHHHHH--------C-------CCTTCEEEEETCTTSHHHHHHH--------H----
T ss_pred cchhhcCHHHHhhcchHHHHHHHHHHHHh--------C-------CCCCCEEEEecCCCCHHHHHHH--------h----
Confidence 34433345678877777665554433332 1 1235799999999999998874 1
Q ss_pred CCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCC
Q 018250 90 LSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQ 169 (359)
Q Consensus 90 ~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~ 169 (359)
+..+++..|+...+....-+..+. -.|.. +++....+ ++++|+|+|+.++||+.+
T Consensus 78 -----~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~---~d~~~~~~-~~~fD~v~~~~~l~~~~d--------------- 132 (279)
T 3ccf_A 78 -----SGAEVLGTDNAATMIEKARQNYPH-LHFDV---ADARNFRV-DKPLDAVFSNAMLHWVKE--------------- 132 (279)
T ss_dssp -----TTCEEEEEESCHHHHHHHHHHCTT-SCEEE---CCTTTCCC-SSCEEEEEEESCGGGCSC---------------
T ss_pred -----CCCeEEEEECCHHHHHHHHhhCCC-CEEEE---CChhhCCc-CCCcCEEEEcchhhhCcC---------------
Confidence 235899999987666554444321 11222 34544334 689999999999999653
Q ss_pred CceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCC
Q 018250 170 GSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVIS 249 (359)
Q Consensus 170 g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~ 249 (359)
...+|+.-++-|+|||++++.+.+.++. ..+.+.+...+... |.-
T Consensus 133 -----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------~~~~~~~~~~~~~~---~~~- 177 (279)
T 3ccf_A 133 -----------------------PEAAIASIHQALKSGGRFVAEFGGKGNI--------KYILEALYNALETL---GIH- 177 (279)
T ss_dssp -----------------------HHHHHHHHHHHEEEEEEEEEEEECTTTT--------HHHHHHHHHHHHHH---TCC-
T ss_pred -----------------------HHHHHHHHHHhcCCCcEEEEEecCCcch--------HHHHHHHHHHHHhc---CCc-
Confidence 2346777889999999999998876542 11233333333322 221
Q ss_pred hhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHH
Q 018250 250 EEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHIN 329 (359)
Q Consensus 250 ~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~ 329 (359)
......|+++++.+++.++++++| |++..++.+..+..+. .+++.+..|++++..+++. .++++..+++.+++.
T Consensus 178 ---~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 251 (279)
T 3ccf_A 178 ---NPQALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTLA-EGEFGMANWIQMFASAFLV-GLTPDQQVQLIRKVE 251 (279)
T ss_dssp ---CGGGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEECS-SGGGHHHHHHHHHCHHHHT-TCCHHHHHHHHHHHH
T ss_pred ---cccCcCceeCCCHHHHHHHHHHcC-CEEEEEEEeccccccc-CCHHHHHHHHHHhhHHHhc-cCCHHHHHHHHHHHH
Confidence 223556788999999999999999 9999999887666552 1467889999988777776 488888999999988
Q ss_pred HHHHHHh
Q 018250 330 TKEAEIL 336 (359)
Q Consensus 330 ~~~~~~~ 336 (359)
+.+.+..
T Consensus 252 ~~~~~~~ 258 (279)
T 3ccf_A 252 ATLQDKL 258 (279)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 8887654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-16 Score=140.90 Aligned_cols=224 Identities=13% Similarity=0.123 Sum_probs=147.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..++ +. ..+++..|+........-+.......-+..+.+++....+|
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 101 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLI--------AR---------GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLP 101 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHH--------TT---------TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSC
T ss_pred CCCEEEEeCCcCCHHHHHHH--------HC---------CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCC
Confidence 45799999999999998874 11 24789999887666655554411000111223466555688
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++||+.+ ...+|+.-.+-|+|||++++.+..
T Consensus 102 ~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~~~ 143 (263)
T 2yqz_A 102 DESVHGVIVVHLWHLVPD--------------------------------------WPKVLAEAIRVLKPGGALLEGWDQ 143 (263)
T ss_dssp TTCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCeeEEEECCchhhcCC--------------------------------------HHHHHHHHHHHCCCCcEEEEEecC
Confidence 999999999999999652 234677778999999999999443
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHc-CCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCC
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKM-GVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTF 295 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~e-Gli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~ 295 (359)
.+.. .. ..+...|.++... |. + ...+.++++.+++.+.+++.| |++..++....+...
T Consensus 144 ~~~~---------~~-~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~~--- 202 (263)
T 2yqz_A 144 AEAS---------PE-WTLQERWRAFAAEEGF-P------VERGLHAKRLKEVEEALRRLG-LKPRTREVARWREER--- 202 (263)
T ss_dssp ECCC---------HH-HHHHHHHHHHHHHHTC-C------CCCCHHHHHHHHHHHHHHHTT-CCCEEEEEEEEEEEE---
T ss_pred CCcc---------HH-HHHHHHHHHHHHHhCC-C------cccccccCCHHHHHHHHHHcC-CCcceEEEeeeecCC---
Confidence 3210 11 1122233333221 21 0 122456778999999999999 998877665433222
Q ss_pred ChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEecc
Q 018250 296 PAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRIS 357 (359)
Q Consensus 296 ~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 357 (359)
+++.+..++++...+.+. +++++..+++.+++.+.+.+.........+-+..++++..||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~rkp 263 (263)
T 2yqz_A 203 TPREALEALSERLYSFTQ-GLPEPVHARVMERLWAWAEAELGDLDRPFPVEKRFLLRVSRLG 263 (263)
T ss_dssp CHHHHHHHHHTTCSGGGS-SSCHHHHHHHHHHHHHHHHHHSSCTTSCEEEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHhhccccc-CCCHHHHHHHHHHHHHHHHHhcCCcCccccccceeEEEeeecC
Confidence 467888888776555554 5889999999999999888764422212344677778887775
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=143.49 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=147.9
Q ss_pred ccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCC
Q 018250 17 TCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPD 96 (359)
Q Consensus 17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~ 96 (359)
+..|++.+..|.+....++.. + . .....+|+|+|||+|..+..+. +.+ |.
T Consensus 8 ~~~y~~~~~~~~~~~~~l~~~--------~--~-----~~~~~~vLdiG~G~G~~~~~l~--------~~~-------~~ 57 (259)
T 2p35_A 8 AQQYLKFEDERTRPARDLLAQ--------V--P-----LERVLNGYDLGCGPGNSTELLT--------DRY-------GV 57 (259)
T ss_dssp CGGGBCCCCGGGHHHHHHHTT--------C--C-----CSCCSSEEEETCTTTHHHHHHH--------HHH-------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHh--------c--C-----CCCCCEEEEecCcCCHHHHHHH--------HhC-------CC
Confidence 457888888887765432211 1 1 1335789999999999998874 332 34
Q ss_pred ceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecC
Q 018250 97 FQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTR 176 (359)
Q Consensus 97 ~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~ 176 (359)
.+++..|+...+....-+..+ +--|.. +++.+.. |++++|+|+|+.++||+.
T Consensus 58 ~~v~~~D~s~~~~~~a~~~~~-~~~~~~---~d~~~~~-~~~~fD~v~~~~~l~~~~----------------------- 109 (259)
T 2p35_A 58 NVITGIDSDDDMLEKAADRLP-NTNFGK---ADLATWK-PAQKADLLYANAVFQWVP----------------------- 109 (259)
T ss_dssp TSEEEEESCHHHHHHHHHHST-TSEEEE---CCTTTCC-CSSCEEEEEEESCGGGST-----------------------
T ss_pred CEEEEEECCHHHHHHHHHhCC-CcEEEE---CChhhcC-ccCCcCEEEEeCchhhCC-----------------------
Confidence 589999998766655544432 111222 3554444 789999999999999964
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccC
Q 018250 177 FMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTF 256 (359)
Q Consensus 177 ~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f 256 (359)
|...+|+.-++-|+|||+++++.++.... .... .+.++...+.......+..
T Consensus 110 ---------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~ 161 (259)
T 2p35_A 110 ---------------DHLAVLSQLMDQLESGGVLAVQMPDNLQE---------PTHI----AMHETADGGPWKDAFSGGG 161 (259)
T ss_dssp ---------------THHHHHHHHGGGEEEEEEEEEEEECCTTS---------HHHH----HHHHHHHHSTTGGGC----
T ss_pred ---------------CHHHHHHHHHHhcCCCeEEEEEeCCCCCc---------HHHH----HHHHHhcCcchHHHhcccc
Confidence 23347778889999999999999754321 1111 2333332211111100111
Q ss_pred CccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHHh-hhhhhhccCHHHHHHHHHHHHHHHHHH
Q 018250 257 NVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAVL-EGLIGKHFGEELLENIFNHINTKEAEI 335 (359)
Q Consensus 257 ~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~~-~~~l~~~~~e~i~delf~r~~~~~~~~ 335 (359)
..+..+++.+++.++++++| |+++..+... ...+ .+++.+..|+++.. .+++. .++++..+++.+++.+.+++.
T Consensus 162 ~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (259)
T 2p35_A 162 LRRKPLPPPSDYFNALSPKS-SRVDVWHTVY-NHPM--KDADSIVEWVKGTGLRPYLA-AAGEENREAFLADYTRRIAAA 236 (259)
T ss_dssp ---CCCCCHHHHHHHHGGGE-EEEEEEEEEE-EEEE--SCHHHHHHHHTTTTTTHHHH-TTCGGGHHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHhcC-CceEEEEEEe-eecc--CCchHHhhhhhcCcchHHHH-hCCHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999 9876555432 2223 25678899998753 45554 588888999999999888865
Q ss_pred hh
Q 018250 336 LS 337 (359)
Q Consensus 336 ~~ 337 (359)
..
T Consensus 237 ~~ 238 (259)
T 2p35_A 237 YP 238 (259)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-12 Score=114.53 Aligned_cols=169 Identities=13% Similarity=0.077 Sum_probs=118.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
....+|+|+|||+|..+..++ +. .|..+++..|+........-+..+... -+.-+.+++.+..+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~ 106 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLM--------EK-------YPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDF 106 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCC
T ss_pred CCCCeEEEecCCCCHHHHHHH--------Hh-------CCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccCC
Confidence 346899999999999998874 33 245799999998766665555554311 12223356765556
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+ +++|+|+++.++||++. .+...+|+.-++-|+|||++++...
T Consensus 107 ~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 107 E-EKYDMVVSALSIHHLED------------------------------------EDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp C-SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CCceEEEEeCccccCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6 99999999999999642 1234577788899999999999987
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccC---CccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTF---NVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f---~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..++. ..........|.....++-.+..++..+ ....+.++.+|+.++++++| |++.++...
T Consensus 150 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-F~~v~~~~~ 214 (234)
T 3dtn_A 150 VHGET--------AFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAG-FRDVSCIYK 214 (234)
T ss_dssp CBCSS--------HHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTT-CEEEEEEEE
T ss_pred cCCCC--------hhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcC-CCceeeeee
Confidence 66542 1233455667777776666666655431 12345679999999999999 998877654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-12 Score=116.71 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=118.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +.+ ..+++..|+........-+..... .--+..+.+++.+..
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~--------~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 124 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLA--------TAR--------DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHS--------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred CCCEEEEeCCCCCHHHHHHH--------Hhc--------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC
Confidence 35799999999999998875 221 258888888765544333222110 000222235776666
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++++|+|+|+.++||+.+ ...+|+..++-|+|||++++..
T Consensus 125 ~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 125 FEDASFDAVWALESLHHMPD--------------------------------------RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp SCTTCEEEEEEESCTTTSSC--------------------------------------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCCccEEEEechhhhCCC--------------------------------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 88999999999999999643 2247778889999999999998
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCC
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKT 294 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~ 294 (359)
+...+... ......+..+.. .+. ..++++.+++.++++++| |++..++.+......
T Consensus 167 ~~~~~~~~----------~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~-- 222 (273)
T 3bus_A 167 FVLLAPVE----------GAKKEAVDAFRA----------GGG-VLSLGGIDEYESDVRQAE-LVVTSTVDISAQARP-- 222 (273)
T ss_dssp EEESSCCC----------HHHHHHHHHHHH----------HHT-CCCCCCHHHHHHHHHHTT-CEEEEEEECHHHHTT--
T ss_pred eeccCCCC----------hhHHHHHHHHHh----------hcC-ccCCCCHHHHHHHHHHcC-CeEEEEEECcHhHHH--
Confidence 86654211 011111111110 011 226789999999999999 999888876322100
Q ss_pred CChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHH
Q 018250 295 FPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINT 330 (359)
Q Consensus 295 ~~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~ 330 (359)
.-..+...+++....+ ...+|++..+.+.+.++.
T Consensus 223 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 256 (273)
T 3bus_A 223 -SLVKTAEAFENARSQV-EPFMGAEGLDRMIATFRG 256 (273)
T ss_dssp -HHHHHHHHHHHTHHHH-HHHHCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhHHHH-HhhcCHHHHHHHHHHHHH
Confidence 0122222233222232 335677776666666654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-11 Score=110.58 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=122.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
....+|+|+|||+|..+..++ +.+ ..+++..|+........-+..... --+.-+.+++.+..+
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~--------~~~--------~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~ 116 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYIN--------EKY--------GAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEF 116 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCC
T ss_pred CCCCEEEEECCCCCHHHHHHH--------HHc--------CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCC
Confidence 345799999999999998885 322 248899998876555444443321 111222346666668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+|+|+.++||++. .|...+|+.-++-|+|||++++..+
T Consensus 117 ~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 117 PENNFDLIYSRDAILALSL------------------------------------ENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp CTTCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcEEEEeHHHHHHhcCh------------------------------------HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8999999999999999631 2566788888999999999999988
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCC
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTF 295 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~ 295 (359)
..+..... ...+...+.. .| ..+++.+++..+++++| |++...+.+... +
T Consensus 161 ~~~~~~~~--------~~~~~~~~~~---~~-------------~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~--~--- 210 (266)
T 3ujc_A 161 CATEKENW--------DDEFKEYVKQ---RK-------------YTLITVEEYADILTACN-FKNVVSKDLSDY--W--- 210 (266)
T ss_dssp EESCGGGC--------CHHHHHHHHH---HT-------------CCCCCHHHHHHHHHHTT-CEEEEEEECHHH--H---
T ss_pred ccCCcccc--------hHHHHHHHhc---CC-------------CCCCCHHHHHHHHHHcC-CeEEEEEeCCHH--H---
Confidence 66542111 0111111111 11 25789999999999999 999887765321 1
Q ss_pred ChhHHHHHHHHHhh--hhhhhccCHHHHHHHHHHHHHHHH
Q 018250 296 PAQFYLSHLRAVLE--GLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 296 ~~~~v~~~iRa~~~--~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
...+..|.+.+.. .-+...++++..+.+.+.....+.
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (266)
T 3ujc_A 211 -NQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIK 249 (266)
T ss_dssp -HHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 2233444444322 112234666666666555555444
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-11 Score=112.75 Aligned_cols=211 Identities=19% Similarity=0.152 Sum_probs=125.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~ 133 (359)
....+|+|+|||+|..+..++ + .+..+++..|+........-+...... --+.-+.+++.+.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la--------~--------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 108 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLA--------G--------HVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL 108 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHH--------T--------TCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred CCCCEEEEeCCCCCHHHHHHH--------h--------ccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence 346899999999999998874 1 234689999998765554433321100 0011223466555
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+|+|+.++|++ . +..+|+.-.+-|+|||++++.
T Consensus 109 ~~~~~~fD~i~~~~~~~~~-~--------------------------------------~~~~l~~~~~~LkpgG~l~~~ 149 (267)
T 3kkz_A 109 PFRNEELDLIWSEGAIYNI-G--------------------------------------FERGLNEWRKYLKKGGYLAVS 149 (267)
T ss_dssp CCCTTCEEEEEESSCGGGT-C--------------------------------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCCEEEEEEcCCceec-C--------------------------------------HHHHHHHHHHHcCCCCEEEEE
Confidence 5789999999999999996 2 123677788999999999999
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCC
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHK 293 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~ 293 (359)
.+........ ..+...|.+- .| .+++.+++.+.++++| |++..++.+....+.
T Consensus 150 ~~~~~~~~~~---------~~~~~~~~~~---------------~~-~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w~- 202 (267)
T 3kkz_A 150 ECSWFTDERP---------AEINDFWMDA---------------YP-EIDTIPNQVAKIHKAG-YLPVATFILPENCWT- 202 (267)
T ss_dssp EEEESSSCCC---------HHHHHHHHHH---------------CT-TCEEHHHHHHHHHHTT-EEEEEEEECCGGGTT-
T ss_pred EeeecCCCCh---------HHHHHHHHHh---------------CC-CCCCHHHHHHHHHHCC-CEEEEEEECCHhHHH-
Confidence 8754322110 2233334321 12 5679999999999999 999888776432221
Q ss_pred CCChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEec
Q 018250 294 TFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRI 356 (359)
Q Consensus 294 ~~~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ 356 (359)
..+...+..+...+...+-....+.++.++..+.++ .... ....+.-.+.+++|.
T Consensus 203 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---y~~~~~~~f~~~~~~ 257 (267)
T 3kkz_A 203 ----DHYFTPKVAAQKIFLTKYAGNKIAEEFSMLQSIEEE-LYHK---YKEYYGYTFFIAKKI 257 (267)
T ss_dssp ----TTTHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHH---HTTTEEEEEEEEEEC
T ss_pred ----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHH---hccccCeEeehhhHH
Confidence 122222333333333332233444555554443332 1121 113455566667664
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-11 Score=111.39 Aligned_cols=151 Identities=16% Similarity=0.057 Sum_probs=101.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +.+ ..+++..|+........-+.... -.--+..+.+++.+..
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~--------~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLV--------RKF--------GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHh--------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 45799999999999998874 222 14888999876554433322211 0001122235776767
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++++|+|+|+.++||+.+ ...+|+.-++-|+|||++++..
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD--------------------------------------KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEeEEEecchhhhcCC--------------------------------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 89999999999999999653 2246777889999999999998
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+...+.... ..+...+... ..| .+++.+++.++++++| |++..++..
T Consensus 188 ~~~~~~~~~---------~~~~~~~~~~--------------~~~-~~~~~~~~~~~l~~aG-f~~~~~~~~ 234 (297)
T 2o57_A 188 PMKEDGIDK---------SSIQPILDRI--------------KLH-DMGSLGLYRSLAKECG-LVTLRTFSR 234 (297)
T ss_dssp EEECTTCCG---------GGGHHHHHHH--------------TCS-SCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred eccCCCCch---------HHHHHHHHHh--------------cCC-CCCCHHHHHHHHHHCC-CeEEEEEEC
Confidence 766543211 0111111211 112 3679999999999999 999888765
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-11 Score=111.44 Aligned_cols=210 Identities=17% Similarity=0.138 Sum_probs=123.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +.+ + .+++..|+........-+...... --+.-+.+++....
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~--------~~~-------~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 109 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLA--------DYV-------K-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHC-------C-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS
T ss_pred CCCeEEEeCCCCCHHHHHHH--------HhC-------C-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence 35699999999999998884 332 2 288999987655544333321100 00122234665556
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++++|+|+|+.++||+. + ..+|+.-.+-|+|||++++..
T Consensus 110 ~~~~~fD~v~~~~~l~~~~--~-------------------------------------~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 110 FQNEELDLIWSEGAIYNIG--F-------------------------------------ERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp SCTTCEEEEEEESCSCCCC--H-------------------------------------HHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCCEEEEEecChHhhcC--H-------------------------------------HHHHHHHHHHcCCCcEEEEEE
Confidence 8899999999999999961 1 136777789999999999998
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCC
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKT 294 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~ 294 (359)
+........ ..+...|... .| .+++.+++.+.++++| |++..........+..
T Consensus 151 ~~~~~~~~~---------~~~~~~~~~~---------------~~-~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w~~- 203 (257)
T 3f4k_A 151 ASWFTSERP---------AEIEDFWMDA---------------YP-EISVIPTCIDKMERAG-YTPTAHFILPENCWTE- 203 (257)
T ss_dssp EEESSSCCC---------HHHHHHHHHH---------------CT-TCCBHHHHHHHHHHTT-EEEEEEEECCGGGTCC-
T ss_pred eeccCCCCh---------HHHHHHHHHh---------------CC-CCCCHHHHHHHHHHCC-CeEEEEEECChhhHHH-
Confidence 653321110 2233334431 01 2679999999999999 9998876664322211
Q ss_pred CChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEec
Q 018250 295 FPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRI 356 (359)
Q Consensus 295 ~~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ 356 (359)
.+...++...+.+...+-+....+++.++..+....+ ..+ ...+--.+++++|+
T Consensus 204 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~g~~~~v~~k~ 257 (257)
T 3f4k_A 204 ----HYFAPQDEVRETFMKEHAGNKTAMDFMKGQQYERSLY-SKY---KDYYGYVFYIGQKR 257 (257)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHH---TTTEEEEEEEEEEC
T ss_pred ----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHh---CCccceEEEEEecC
Confidence 1111222222233333334455666666665544433 221 12344456666663
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-12 Score=114.61 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=100.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..+. +. . .+++..|+...+....-+.... .. +.-+.+++...
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~--------~~-------~--~~v~gvD~s~~~l~~a~~~~~~~~~~~--v~~~~~d~~~l 97 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFA--------PF-------V--KKVVAFDLTEDILKVARAFIEGNGHQQ--VEYVQGDAEQM 97 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHG--------GG-------S--SEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCC-CC
T ss_pred CCCEEEEEeCCCCHHHHHHH--------Hh-------C--CEEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEecHHhC
Confidence 45799999999999888773 22 1 2889999877555443332211 11 11223466666
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.||++++|+|+|+.++||+.+ ...+|+.-++-|+|||++++.
T Consensus 98 ~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 98 PFTDERFHIVTCRIAAHHFPN--------------------------------------PASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCEEEEEEhhhhHhcCC--------------------------------------HHHHHHHHHHHcCCCCEEEEE
Confidence 689999999999999999743 224677788999999999998
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
....++. ..+..+...+..+. + .....+.+.+++.++++++| |++..++.+..
T Consensus 140 ~~~~~~~---------~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~ 192 (260)
T 1vl5_A 140 DNSAPEN---------DAFDVFYNYVEKER----------D--YSHHRAWKKSDWLKMLEEAG-FELEELHCFHK 192 (260)
T ss_dssp EEEBCSS---------HHHHHHHHHHHHHH----------C--TTCCCCCBHHHHHHHHHHHT-CEEEEEEEEEE
T ss_pred EcCCCCC---------HHHHHHHHHHHHhc----------C--ccccCCCCHHHHHHHHHHCC-CeEEEEEEeec
Confidence 7654432 11222222222211 0 11234578999999999999 99988888754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=108.05 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=105.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+++ . ..+++..|+........-+..+.+--|. .+++.+..++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~---~~d~~~~~~~ 104 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLL--------A---------GRTVYGIEPSREMRMIAKEKLPKEFSIT---EGDFLSFEVP 104 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHSCTTCCEE---SCCSSSCCCC
T ss_pred CCCeEEEeCCCCCHHHHHHHh--------C---------CCeEEEEeCCHHHHHHHHHhCCCceEEE---eCChhhcCCC
Confidence 357999999999999888742 1 2489999998766555544443111122 3466665667
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+++|+|+|+.++||+... +...+|+.-++-|+|||+++++.+.
T Consensus 105 -~~fD~v~~~~~l~~~~~~------------------------------------~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 105 -TSIDTIVSTYAFHHLTDD------------------------------------EKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp -SCCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred -CCeEEEEECcchhcCChH------------------------------------HHHHHHHHHHHhcCCCCEEEEEecc
Confidence 999999999999996421 1234777888999999999999765
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+. ......+..+...|.... ..-..+.++++.++++++++++| |++...+..
T Consensus 148 ~~~~------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~ 201 (220)
T 3hnr_A 148 FADQ------------DAYDKTVEAAKQRGFHQL---ANDLQTEYYTRIPVMQTIFENNG-FHVTFTRLN 201 (220)
T ss_dssp BSSH------------HHHHHHHHHHHHTTCHHH---HHHHHHSCCCBHHHHHHHHHHTT-EEEEEEECS
T ss_pred ccCh------------HHHHHHHHHHHhCCCccc---hhhcchhhcCCHHHHHHHHHHCC-CEEEEeecc
Confidence 5431 122233334444443211 11123457889999999999999 998877654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=114.53 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=118.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. .+..+|+..|+....... . ....-+.-+.+++....+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~-----------------~~~~~v~gvD~s~~~~~~----a-~~~~~~~~~~~d~~~~~~~ 91 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALA-----------------NQGLFVYAVEPSIVMRQQ----A-VVHPQVEWFTGYAENLALP 91 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHH-----------------TTTCEEEEECSCHHHHHS----S-CCCTTEEEECCCTTSCCSC
T ss_pred CCCEEEEEcCcccHHHHHHH-----------------hCCCEEEEEeCCHHHHHH----H-HhccCCEEEECchhhCCCC
Confidence 46899999999999998874 134689999987633211 1 1111122223466665688
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|+.++||+. |+..+|+.-++-|+ ||++++..+.
T Consensus 92 ~~~fD~v~~~~~l~~~~--------------------------------------~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 92 DKSVDGVISILAIHHFS--------------------------------------HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp TTCBSEEEEESCGGGCS--------------------------------------SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCCEeEEEEcchHhhcc--------------------------------------CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 99999999999999963 34457788889999 9988888876
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCC--
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKT-- 294 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~-- 294 (359)
.+.... .... ..+...... ...++++.+++. .++++| |++.+++.+..|..+.+
T Consensus 133 ~~~~~~---~~~~---~~~~~~~~~----------------~~~~~~~~~~~~-~l~~aG-F~~v~~~~~~~p~~~~~~~ 188 (261)
T 3ege_A 133 IRLAQR---IWLY---DYFPFLWED----------------ALRFLPLDEQIN-LLQENT-KRRVEAIPFLLPHDLSDLF 188 (261)
T ss_dssp GGGCCC---CGGG---GTCHHHHHH----------------HHTSCCHHHHHH-HHHHHH-CSEEEEEECCEETTCSBCC
T ss_pred CchhHH---HHHH---HHHHHHhhh----------------hhhhCCCHHHHH-HHHHcC-CCceeEEEecCCCcCcchh
Confidence 543211 1100 111111110 012678899999 999999 99988888765544321
Q ss_pred C-----ChhHHHHH-HHHHhhhhhhhccCHHHHHHHHHHHHHHHHH
Q 018250 295 F-----PAQFYLSH-LRAVLEGLIGKHFGEELLENIFNHINTKEAE 334 (359)
Q Consensus 295 ~-----~~~~v~~~-iRa~~~~~l~~~~~e~i~delf~r~~~~~~~ 334 (359)
. .+..+... .+...+. +. .++++.++.+.++..+.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~e~~~~~~~~~~~l~~ 232 (261)
T 3ege_A 189 AAAAWRRPELYLKAEVRAGISS-FA-LANQDLVEKGLELLTADLNN 232 (261)
T ss_dssp TTTTTTCGGGGGSHHHHHTSHH-HH-HSCHHHHHHHHHHHHHHHHT
T ss_pred hHHhccCchhhcCcchhccccc-ee-ecCHHHHHHHHHHHHHHHhc
Confidence 0 11222221 2222222 22 35778888888888877754
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-11 Score=113.55 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=102.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
...+|+|+|||+|..|+.++ +++ ..|..+|+..|+...+....-+.+.. .+ -|+. |++.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la--------~~~-----~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~---~D~~ 133 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVR--------RNI-----HHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDIR 133 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHH--------HTC-----CSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCTT
T ss_pred CCCEEEEEeCCCCHHHHHHH--------Hhc-----CCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEee---cccc
Confidence 35799999999999998874 332 23567999999988776554444322 12 1333 3554
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+ +|.+++|+++|+++|||+.. .|...+|+.-++-|+|||+|+
T Consensus 134 ~--~~~~~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpGG~li 175 (261)
T 4gek_A 134 D--IAIENASMVVLNFTLQFLEP------------------------------------SERQALLDKIYQGLNPGGALV 175 (261)
T ss_dssp T--CCCCSEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred c--ccccccccceeeeeeeecCc------------------------------------hhHhHHHHHHHHHcCCCcEEE
Confidence 4 34567999999999999641 144567888899999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHH-HcCCCChhhh----ccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLA-KMGVISEEKA----RTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv-~eGli~~e~~----d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
++-...... ....+.+...+.+.. ..|. ++.++ ..........|.+|+.+.++++| |+...
T Consensus 176 i~e~~~~~~--------~~~~~~~~~~~~~~~~~~g~-s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AG-F~~ve 241 (261)
T 4gek_A 176 LSEKFSFED--------AKVGELLFNMHHDFKRANGY-SELEISQKRSMLENVMLTDSVETHKARLHKAG-FEHSE 241 (261)
T ss_dssp EEEEBCCSS--------HHHHHHHHHHHHHHHHHTTG-GGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHT-CSEEE
T ss_pred EEeccCCCC--------HHHHHHHHHHHHHHHHHcCC-CHHHHHHHHhhhcccccCCCHHHHHHHHHHcC-CCeEE
Confidence 976544331 112233333333332 2233 22111 11112234468999999999999 97543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=110.00 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=100.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~ 132 (359)
....+|+|+|||+|..+..++ +. . .+++..|+........-+.... .. +.-+.+++..
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~--------~~-------~--~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~ 80 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFS--------PY-------V--QECIGVDATKEMVEVASSFAQEKGVEN--VRFQQGTAES 80 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHG--------GG-------S--SEEEEEESCHHHHHHHHHHHHHHTCCS--EEEEECBTTB
T ss_pred CCCCEEEEEccCcCHHHHHHH--------Hh-------C--CEEEEEECCHHHHHHHHHHHHHcCCCC--eEEEeccccc
Confidence 346799999999999888773 21 1 2788889876555443332211 11 1112346656
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..++++++|+|+|+.++||+.+ ...+|+.-++-|+|||++++
T Consensus 81 ~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~ 122 (239)
T 1xxl_A 81 LPFPDDSFDIITCRYAAHHFSD--------------------------------------VRKAVREVARVLKQDGRFLL 122 (239)
T ss_dssp CCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCcEEEEEECCchhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 5688999999999999999643 23467778899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
.....++. .....+...+..+ ..+ ......+.+++.++++++| |++..++.+..
T Consensus 123 ~~~~~~~~---------~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~ll~~aG-f~~~~~~~~~~ 176 (239)
T 1xxl_A 123 VDHYAPED---------PVLDEFVNHLNRL-RDP-----------SHVRESSLSEWQAMFSANQ-LAYQDIQKWNL 176 (239)
T ss_dssp EEECBCSS---------HHHHHHHHHHHHH-HCT-----------TCCCCCBHHHHHHHHHHTT-EEEEEEEEEEE
T ss_pred EEcCCCCC---------hhHHHHHHHHHHh-ccc-----------cccCCCCHHHHHHHHHHCC-CcEEEEEeecC
Confidence 87654431 1122222222221 111 1124568999999999999 99988888753
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=109.85 Aligned_cols=172 Identities=13% Similarity=0.033 Sum_probs=111.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc------cccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY------YAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~------~~~~vpgsf 130 (359)
...+|+|+|||+|..+..++ +. ..+++..|+........-+....... -+.-+.+++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 92 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELA--------SK---------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA 92 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT
T ss_pred CCCeEEEECCCCCHHHHHHH--------hC---------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc
Confidence 45799999999999988874 21 24899999987666655554443111 122223456
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
....+|++++|+++++.++|++... .++..+|+.-.+-|+|||++
T Consensus 93 ~~~~~~~~~~D~v~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l 137 (235)
T 3sm3_A 93 SSLSFHDSSFDFAVMQAFLTSVPDP-----------------------------------KERSRIIKEVFRVLKPGAYL 137 (235)
T ss_dssp TSCCSCTTCEEEEEEESCGGGCCCH-----------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred cccCCCCCceeEEEEcchhhcCCCH-----------------------------------HHHHHHHHHHHHHcCCCeEE
Confidence 5556889999999999999996531 13345788888999999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhcc--CCccccCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKART--FNVPAYFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~--f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
+++.++.....+ .........+.....+|......... .....++++.+|++++++++| |++..++....
T Consensus 138 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aG-f~~~~~~~~~~ 209 (235)
T 3sm3_A 138 YLVEFGQNWHLK-------LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCR-FEIDYFRVKEL 209 (235)
T ss_dssp EEEEEBCCTTSH-------HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTT-EEEEEEEEEEE
T ss_pred EEEECCcchhHH-------HHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcC-CEEEEEEecce
Confidence 999987754211 11122222222222222111110011 123356889999999999999 99999987643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-10 Score=106.30 Aligned_cols=166 Identities=13% Similarity=0.183 Sum_probs=103.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
...+|+|+|||+|..+..++ +.+ + .+|+..|+........-+.... .. .+.. +++.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la--------~~~-------~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~ 132 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAV--------AEY-------D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGWE 132 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHH-------C-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE---CCGG
T ss_pred CcCEEEEeeccCcHHHHHHH--------HhC-------C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CCHH
Confidence 35799999999999998885 332 1 5889999977665444333221 11 1222 3443
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+ + ++++|+|+|+.++|++.+... .. ..+++..+|+.-.+-|+|||+++
T Consensus 133 ~-~--~~~fD~v~~~~~~~~~~d~~~-~~----------------------------~~~~~~~~l~~~~~~LkpgG~l~ 180 (302)
T 3hem_A 133 E-F--DEPVDRIVSLGAFEHFADGAG-DA----------------------------GFERYDTFFKKFYNLTPDDGRML 180 (302)
T ss_dssp G-C--CCCCSEEEEESCGGGTTCCSS-CC----------------------------CTTHHHHHHHHHHHSSCTTCEEE
T ss_pred H-c--CCCccEEEEcchHHhcCcccc-cc----------------------------chhHHHHHHHHHHHhcCCCcEEE
Confidence 3 2 789999999999999765311 00 01366778999999999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+..+...+.............+ ...+.+.. ..+..|. +.|+.+++.+.+++.| |++..++.+
T Consensus 181 i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~~~p~~~~~s~~~~~~~l~~aG-f~~~~~~~~ 243 (302)
T 3hem_A 181 LHTITIPDKEEAQELGLTSPMS--LLRFIKFI----------LTEIFPGGRLPRISQVDYYSSNAG-WKVERYHRI 243 (302)
T ss_dssp EEEEECCCHHHHHHHTCCCCHH--HHHHHHHH----------HHHTCTTCCCCCHHHHHHHHHHHT-CEEEEEEEC
T ss_pred EEEEeccCccchhhcccccccc--ccchHHHH----------HHhcCCCCCCCCHHHHHHHHHhCC-cEEEEEEeC
Confidence 9998766421000000000000 00011111 1122333 7899999999999999 999988776
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=114.28 Aligned_cols=157 Identities=8% Similarity=0.136 Sum_probs=97.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCce--EEecCCCCCchHHHHHhCCC----Ccc-cccccCc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQ--VFFNDHTENDFNTLFRTLPP----RKY-YAAGVPG 128 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~--v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpg 128 (359)
....+|||+|||+|..|..++..+ ..++ |... ++..|...++....-+.+.. ... +.. ..+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l----~~~~-------~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~-~~~ 118 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKV----QAQY-------PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAW-HKE 118 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHH----HHHS-------TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEE-ECS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHH----HhhC-------CCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEE-Eec
Confidence 346799999999998777665433 2232 3344 49999988776654443211 111 110 111
Q ss_pred cccc------CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 129 SFHG------RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAE 202 (359)
Q Consensus 129 sfy~------~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 202 (359)
+... +.|+++++|+|+|+.+|||+.+ +..+|+.-++
T Consensus 119 ~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~~~~r 160 (292)
T 2aot_A 119 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--------------------------------------IPATLKFFHS 160 (292)
T ss_dssp CHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHH
T ss_pred chhhhhhhhccccCCCceeEEEEeeeeeecCC--------------------------------------HHHHHHHHHH
Confidence 2221 2267899999999999999653 3346777889
Q ss_pred hhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 203 ELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 203 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
-|||||++++.....+. .+. ..|...... +. ......+++.+++..++++.| |++..
T Consensus 161 ~LkpgG~l~i~~~~~~~-----------~~~---~~~~~~~~~--~~------~~~~~~~~~~~~~~~~l~~aG-f~~~~ 217 (292)
T 2aot_A 161 LLGTNAKMLIIVVSGSS-----------GWD---KLWKKYGSR--FP------QDDLCQYITSDDLTQMLDNLG-LKYEC 217 (292)
T ss_dssp TEEEEEEEEEEEECTTS-----------HHH---HHHHHHGGG--SC------CCTTCCCCCHHHHHHHHHHHT-CCEEE
T ss_pred HcCCCcEEEEEEecCCc-----------cHH---HHHHHHHHh--cc------CCCcccCCCHHHHHHHHHHCC-CceEE
Confidence 99999999999765321 111 122222110 00 001236789999999999999 98876
Q ss_pred EEE
Q 018250 283 MQQ 285 (359)
Q Consensus 283 le~ 285 (359)
...
T Consensus 218 ~~~ 220 (292)
T 2aot_A 218 YDL 220 (292)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-11 Score=108.44 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=99.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccC--C
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGR--L 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~--l 134 (359)
...+|+|+|||+|..+..+. +. ..+++..|+........-+. +..+.++..+- .
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~ 96 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCK--------EE---------GIESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKS 96 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHH--------HH---------TCCEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHH--------hC---------CCcEEEEECCHHHHHHHHhh-------cceeeccHHHHhhh
Confidence 45799999999999987663 22 13688899876444332221 12222344442 5
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++++|+|+|+.++||+.. .|+..+|+.-++-|+|||++++..
T Consensus 97 ~~~~~fD~i~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 97 LPDKYLDGVMISHFVEHLDP------------------------------------ERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp SCTTCBSEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred cCCCCeeEEEECCchhhCCc------------------------------------HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 78999999999999999642 155668888899999999999998
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
++..+ ... +.+.+ + .....++++.+++..+++++| |++..++.+.
T Consensus 141 ~~~~~-----------~~~-~~~~~--------~-------~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 185 (240)
T 3dli_A 141 PNPTS-----------LYS-LINFY--------I-------DPTHKKPVHPETLKFILEYLG-FRDVKIEFFE 185 (240)
T ss_dssp ECTTS-----------HHH-HHHHT--------T-------STTCCSCCCHHHHHHHHHHHT-CEEEEEEEEC
T ss_pred CCcch-----------hHH-HHHHh--------c-------CccccccCCHHHHHHHHHHCC-CeEEEEEEec
Confidence 86443 111 11111 1 111236678999999999999 9999888875
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=106.86 Aligned_cols=143 Identities=16% Similarity=0.103 Sum_probs=104.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..+..++ +. ..+++..|+........-+..+. --|+ .+++.+..+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~~~~~a~~~~~~-~~~~---~~d~~~~~~~~ 100 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLA--------SL---------GHQIEGLEPATRLVELARQTHPS-VTFH---HGTITDLSDSP 100 (203)
T ss_dssp CSCEEEETCTTCHHHHHHH--------HT---------TCCEEEECCCHHHHHHHHHHCTT-SEEE---CCCGGGGGGSC
T ss_pred CCeEEEecCCCCHHHHHHH--------hc---------CCeEEEEeCCHHHHHHHHHhCCC-CeEE---eCcccccccCC
Confidence 5789999999999988774 21 24789999876555444443331 1122 34665655789
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|+|+++.++||++. .|...+|+.-++-|+|||+++++.+..
T Consensus 101 ~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 101 KRWAGLLAWYSLIHMGP------------------------------------GELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp CCEEEEEEESSSTTCCT------------------------------------TTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred CCeEEEEehhhHhcCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 99999999999999641 145568888899999999999999765
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
.... .++....+.++.+.+|+.+++++.| |++..++.+..
T Consensus 145 ~~~~------------------------------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 184 (203)
T 3h2b_A 145 PSLE------------------------------PMYHPVATAYRWPLPELAQALETAG-FQVTSSHWDPR 184 (203)
T ss_dssp SSCE------------------------------EECCSSSCEEECCHHHHHHHHHHTT-EEEEEEEECTT
T ss_pred Cchh------------------------------hhhchhhhhccCCHHHHHHHHHHCC-CcEEEEEecCC
Confidence 5411 1122234567889999999999999 99999988743
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=107.84 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=101.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~ 132 (359)
+...+|+|+|||+|..+..+. +. .|..+++..|+........-+.+.. .. +.-+.+++..
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~~~ 98 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILA--------KN-------NPDAEITSIDISPESLEKARENTEKNGIKN--VKFLQANIFS 98 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHH--------HH-------CTTSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCGGG
T ss_pred CCCCeEEEecCCCCHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCC--cEEEEccccc
Confidence 346799999999999988774 33 2456899999977655544333211 11 1112246666
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..+|++++|+|+++.++||+.+. ..+|+.-.+-|+|||++++
T Consensus 99 ~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~pgG~l~~ 140 (276)
T 3mgg_A 99 LPFEDSSFDHIFVCFVLEHLQSP--------------------------------------EEALKSLKKVLKPGGTITV 140 (276)
T ss_dssp CCSCTTCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHHEEEEEEEEE
T ss_pred CCCCCCCeeEEEEechhhhcCCH--------------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 67899999999999999997532 2467777899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHH-HHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDL-AKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~l-v~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.....++....... ....... ..+..+ ...|. ...+.+++..+++++| |++..++...
T Consensus 141 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~l~~~l~~aG-f~~v~~~~~~ 199 (276)
T 3mgg_A 141 IEGDHGSCYFHPEG--KKAIEAW-NCLIRVQAYMKG-------------NSLVGRQIYPLLQESG-FEKIRVEPRM 199 (276)
T ss_dssp EEECGGGCEEESCC--HHHHHHH-HHHHHHHHHTTC-------------CTTGGGGHHHHHHHTT-CEEEEEEEEE
T ss_pred EEcCCCCceECCCc--HHHHHHH-HHHHHHHHhcCC-------------CcchHHHHHHHHHHCC-CCeEEEeeEE
Confidence 87654331100000 1111111 121221 11111 2245688999999999 9998888764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-11 Score=111.17 Aligned_cols=165 Identities=12% Similarity=0.150 Sum_probs=106.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +. ..+++..|+........-+.+.... --+.-+.+++.+..
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 130 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMA--------ER---------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA 130 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG
T ss_pred CCCEEEEeCCcchHHHHHHH--------HC---------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh
Confidence 36799999999999988774 21 2488999987766554444332210 01112234665555
Q ss_pred -CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 -FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 -~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
++++++|+|+++.++||+.+ ...+|+.-++-|+|||++++.
T Consensus 131 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~ 172 (285)
T 4htf_A 131 SHLETPVDLILFHAVLEWVAD--------------------------------------PRSVLQTLWSVLRPGGVLSLM 172 (285)
T ss_dssp GGCSSCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHTEEEEEEEEEE
T ss_pred hhcCCCceEEEECchhhcccC--------------------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 78899999999999999642 234777888999999999999
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
....... .....+...|.. ...+..... .....+.++.+.+|+..+++++| |++...+.+...
T Consensus 173 ~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~aG-f~v~~~~~~~~~ 235 (285)
T 4htf_A 173 FYNAHGL---------LMHNMVAGNFDY-VQAGMPKKK--KRTLSPDYPRDPTQVYLWLEEAG-WQIMGKTGVRVF 235 (285)
T ss_dssp EEBHHHH---------HHHHHHTTCHHH-HHTTCCCC------CCCSCCBCHHHHHHHHHHTT-CEEEEEEEESSS
T ss_pred EeCCchH---------HHHHHHhcCHHH-Hhhhccccc--cccCCCCCCCCHHHHHHHHHHCC-CceeeeeeEEEe
Confidence 8765421 011111111222 222221111 11234567789999999999999 999998888543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-11 Score=112.03 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=72.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..|..+. ++ -.+|+..|+...+-.. .... +-.|.. +++.+..+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~--------~~---------~~~v~gvD~s~~ml~~---a~~~~~v~~~~---~~~e~~~~ 95 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLA--------EF---------FERVHAVDPGEAQIRQ---ALRHPRVTYAV---APAEDTGL 95 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHH--------TT---------CSEEEEEESCHHHHHT---CCCCTTEEEEE---CCTTCCCC
T ss_pred CCCCEEEEcCCCCHHHHHHH--------Hh---------CCEEEEEeCcHHhhhh---hhhcCCceeeh---hhhhhhcc
Confidence 34689999999999998874 22 1378999987655321 1111 112333 46766679
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++|+|+|+|+.++||+. ...||+.-++-|||||+|++...
T Consensus 96 ~~~sfD~v~~~~~~h~~~---------------------------------------~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 96 PPASVDVAIAAQAMHWFD---------------------------------------LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CSSCEEEEEECSCCTTCC---------------------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCcccEEEEeeehhHhh---------------------------------------HHHHHHHHHHHcCCCCEEEEEEC
Confidence 999999999999999963 11366677889999999999988
Q ss_pred cCCC
Q 018250 216 TGPS 219 (359)
Q Consensus 216 g~~~ 219 (359)
+...
T Consensus 137 ~~~~ 140 (257)
T 4hg2_A 137 GLTR 140 (257)
T ss_dssp CCCB
T ss_pred CCCC
Confidence 7664
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-09 Score=98.28 Aligned_cols=160 Identities=18% Similarity=0.304 Sum_probs=97.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..+..++ +.+ ..+|+..|+..+.....-+.+.. ..+ .-+.+++..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~--------~~~--------~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~ 125 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAV--------EKY--------DVNVVGLTLSKNQANHVQQLVANSENLRSK--RVLLAGWEQ 125 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHTCCCCSCE--EEEESCGGG
T ss_pred CcCEEEEECCcccHHHHHHH--------HHc--------CCEEEEEECCHHHHHHHHHHHHhcCCCCCe--EEEECChhh
Confidence 35799999999999988874 222 13788888876555444333221 111 111234422
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+| +++|+|+|..++|++.. .|+..+|+.-++-|+|||++++
T Consensus 126 --~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 126 --FD-EPVDRIVSIGAFEHFGH------------------------------------ERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp --CC-CCCSEEEEESCGGGTCT------------------------------------TTHHHHHHHHHHHSCTTCEEEE
T ss_pred --CC-CCeeEEEEeCchhhcCh------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 35 89999999999999642 1445678888999999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc-ccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP-AYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P-~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+...+.......+...... . ..+.+..... ..| ...|+.+++.+.++++| |++..++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~----------~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~ 228 (287)
T 1kpg_A 167 HTITGLHPKEIHERGLPMSFT-F-ARFLKFIVTE----------IFPGGRLPSIPMVQECASANG-FTVTRVQSL 228 (287)
T ss_dssp EEEEECCHHHHTTTTCSCHHH-H-HHHHHHHHHH----------TSTTCCCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred EEecCCCcccccccccccccc-c-cchhhhHHhe----------eCCCCCCCCHHHHHHHHHhCC-cEEEEEEeC
Confidence 998765411000000000000 0 0111111110 111 25679999999999999 999888765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=104.45 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=101.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..+..++ .+..+|+..|+........-+..+.. .--+.-+.+++.+ +.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~-----------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 128 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMA-----------------SPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR 128 (235)
T ss_dssp CEEEEEETCTTCHHHHHHC-----------------BTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC
T ss_pred CCCEEEeCCCCCHHHHHHH-----------------hCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC
Confidence 3599999999999998773 13468999999876665554444321 0112222346644 45
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+|+++.++||+. + .|...+|+.-++-|+|||++++...
T Consensus 129 ~~~~fD~v~~~~~l~~~~---~---------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 129 PTELFDLIFDYVFFCAIE---P---------------------------------EMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp CSSCEEEEEEESSTTTSC---G---------------------------------GGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCeeEEEEChhhhcCC---H---------------------------------HHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 778999999999999964 1 1445678888899999999999876
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
..... ...|.+..+.+++.+++++.| |++..++.....
T Consensus 173 ~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~ 210 (235)
T 3lcc_A 173 PITDH-----------------------------------VGGPPYKVDVSTFEEVLVPIG-FKAVSVEENPHA 210 (235)
T ss_dssp CCSCC-----------------------------------CSCSSCCCCHHHHHHHHGGGT-EEEEEEEECTTC
T ss_pred ccccc-----------------------------------CCCCCccCCHHHHHHHHHHcC-CeEEEEEecCCc
Confidence 54321 112335689999999999999 999999987543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-10 Score=100.28 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-CCcccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-PRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-~~~~~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..+..+. +. ..+++..|+........-+ .. .+--|+ .+++.+. +|
T Consensus 47 ~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~~D~s~~~~~~a~~-~~~~~~~~~---~~d~~~~-~~ 104 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLS--------GL---------ADRVTALDGSAEMIAEAGR-HGLDNVEFR---QQDLFDW-TP 104 (218)
T ss_dssp CSEEEEESCTTSHHHHHHH--------HH---------SSEEEEEESCHHHHHHHGG-GCCTTEEEE---ECCTTSC-CC
T ss_pred CCeEEEECCCCCHHHHHHH--------hc---------CCeEEEEeCCHHHHHHHHh-cCCCCeEEE---ecccccC-CC
Confidence 3599999999999998874 22 1478888887644443332 11 111122 2455444 89
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++||+.. .++..+|+.-++-|+|||++++...+
T Consensus 105 ~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 105 DRQWDAVFFAHWLAHVPD------------------------------------DRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp SSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCceeEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999999999999642 13456788888999999999999987
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcC---CCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMG---VISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eG---li~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+.... . ...+....... .+.. -..+.....+++.+|+.++++++| |+++..+..
T Consensus 149 ~~~~~---------~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~ 205 (218)
T 3ou2_A 149 DHERR---------L----EQQDDSEPEVAVRRTLQD--GRSFRIVKVFRSPAELTERLTALG-WSCSVDEVH 205 (218)
T ss_dssp CCC-------------------------CEEEEECTT--SCEEEEECCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCccc---------c----chhhhcccccceeeecCC--cchhhHhhcCCCHHHHHHHHHHCC-CEEEeeecc
Confidence 74321 0 00111000000 0000 000111234789999999999999 998777664
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=111.66 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=100.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--c----------cccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--K----------YYAA 124 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~----------~~~~ 124 (359)
...+|||+|||+|..++.+. . .+..+|+..|+...+...+-+.+... . .++.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~---------~-------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~ 134 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSA---------C-------SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE 134 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTG---------G-------GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhh---------c-------cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhc
Confidence 45799999999999554331 1 01248999999876655443322210 0 0111
Q ss_pred c-------------------cCccccc-C-----CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCH
Q 018250 125 G-------------------VPGSFHG-R-----LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMK 179 (359)
Q Consensus 125 ~-------------------vpgsfy~-~-----l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~ 179 (359)
+ +.+++.+ . -+|++++|+|+|+.+|||+..-
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~------------------------ 190 (289)
T 2g72_A 135 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD------------------------ 190 (289)
T ss_dssp CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS------------------------
T ss_pred CcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCC------------------------
Confidence 1 1124443 2 2567889999999999996531
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc
Q 018250 180 GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP 259 (359)
Q Consensus 180 ~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P 259 (359)
..|+..+|+.-++-|||||+|++...-..+. +. .| ....+
T Consensus 191 ----------~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-----------~~-----------~~--------~~~~~ 230 (289)
T 2g72_A 191 ----------LASFQRALDHITTLLRPGGHLLLIGALEESW-----------YL-----------AG--------EARLT 230 (289)
T ss_dssp ----------HHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-----------EE-----------ET--------TEEEE
T ss_pred ----------HHHHHHHHHHHHHhcCCCCEEEEEEecCcce-----------EE-----------cC--------Ceeee
Confidence 1256678888999999999999975322210 00 00 11235
Q ss_pred ccCCCHHHHHHHHHhCCceeEeEEEEeecCCCC
Q 018250 260 AYFPYVEELESLIQRNGHFAMERMQQLDQPMRH 292 (359)
Q Consensus 260 ~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~ 292 (359)
.++.+.+|+.++++++| |++..++.+..+..+
T Consensus 231 ~~~~~~~~l~~~l~~aG-f~~~~~~~~~~~~~~ 262 (289)
T 2g72_A 231 VVPVSEEEVREALVRSG-YKVRDLRTYIMPAHL 262 (289)
T ss_dssp CCCCCHHHHHHHHHHTT-EEEEEEEEEECCGGG
T ss_pred eccCCHHHHHHHHHHcC-CeEEEeeEeeccccc
Confidence 57889999999999999 999999988654444
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=105.59 Aligned_cols=150 Identities=14% Similarity=0.008 Sum_probs=95.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +.+ ..+++..|+........-+...... --+.-+.+++.+..
T Consensus 36 ~~~~VLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 99 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWA--------RDH--------GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 99 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHH--------HHT--------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred CCCEEEEECCCCCHHHHHHH--------Hhc--------CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence 35799999999999988774 222 2478888987655444333221100 00122234665544
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+ ++++|+|+|+.++|++... ..+|+.-++-|+|||++++..
T Consensus 100 ~-~~~fD~V~~~~~~~~~~~~--------------------------------------~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 100 A-NEKCDVAACVGATWIAGGF--------------------------------------AGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp C-SSCEEEEEEESCGGGTSSS--------------------------------------HHHHHHHTTSEEEEEEEEEEE
T ss_pred c-CCCCCEEEECCChHhcCCH--------------------------------------HHHHHHHHHHcCCCeEEEEec
Confidence 5 8999999999999996532 236667789999999999987
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
......... ..+...|. . .....+++.+++.++++++| |++..+...
T Consensus 141 ~~~~~~~~~---------~~~~~~~~--------------~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 187 (256)
T 1nkv_A 141 PYWRQLPAT---------EEIAQACG--------------V-SSTSDFLTLPGLVGAFDDLG-YDVVEMVLA 187 (256)
T ss_dssp EEETTCCSS---------HHHHHTTT--------------C-SCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred CcccCCCCh---------HHHHHHHh--------------c-ccccccCCHHHHHHHHHHCC-CeeEEEEeC
Confidence 644322110 11111110 0 11126789999999999999 998776543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=108.38 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=99.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy 131 (359)
...+|+|+|||+|..+..++ +++ ..+|+..|+........-+.... +--|.. +++.
T Consensus 117 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~ 177 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAH--------RRF--------GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRV---CNML 177 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---CCTT
T ss_pred CCCEEEEecCCCCHHHHHHH--------HHc--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE---CChh
Confidence 45799999999999998885 222 24788888876544333322211 112333 4666
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+..+|++++|+|+|+.++||+. + ..+|+.-++-|+|||+++
T Consensus 178 ~~~~~~~~fD~V~~~~~l~~~~--~-------------------------------------~~~l~~~~~~LkpgG~l~ 218 (312)
T 3vc1_A 178 DTPFDKGAVTASWNNESTMYVD--L-------------------------------------HDLFSEHSRFLKVGGRYV 218 (312)
T ss_dssp SCCCCTTCEEEEEEESCGGGSC--H-------------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred cCCCCCCCEeEEEECCchhhCC--H-------------------------------------HHHHHHHHHHcCCCcEEE
Confidence 6568899999999999999963 1 136777889999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+......+.... ....+..+... ..| .+++.+++.++++++| |++..++.+
T Consensus 219 ~~~~~~~~~~~~----~~~~~~~~~~~------------------~~~-~~~s~~~~~~~l~~aG-f~~~~~~~~ 269 (312)
T 3vc1_A 219 TITGCWNPRYGQ----PSKWVSQINAH------------------FEC-NIHSRREYLRAMADNR-LVPHTIVDL 269 (312)
T ss_dssp EEEEEECTTTCS----CCHHHHHHHHH------------------HTC-CCCBHHHHHHHHHTTT-EEEEEEEEC
T ss_pred EEEccccccccc----hhHHHHHHHhh------------------hcC-CCCCHHHHHHHHHHCC-CEEEEEEeC
Confidence 998766553210 01111111111 011 4789999999999999 999888877
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=103.41 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=98.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..+..+. +. .+ +++..|+........-+..+..--|. .+++.+ ++|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~--------~~-------~~--~v~gvD~s~~~~~~a~~~~~~~v~~~---~~d~~~-~~~~ 101 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQ--------EH-------FN--DITCVEASEEAISHAQGRLKDGITYI---HSRFED-AQLP 101 (250)
T ss_dssp SSCEEEESCTTSHHHHHHT--------TT-------CS--CEEEEESCHHHHHHHHHHSCSCEEEE---ESCGGG-CCCS
T ss_pred CCcEEEECCCCCHHHHHHH--------Hh-------CC--cEEEEeCCHHHHHHHHHhhhCCeEEE---EccHHH-cCcC
Confidence 4579999999999988773 11 12 78888988765554444443211122 235543 3789
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH-HhhccCceeEEEecc
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARA-EELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra-~EL~pGG~lvl~~~g 216 (359)
+++|+|+|+.+||++.+ ...+|+.-+ +-|+|||+++++.+.
T Consensus 102 ~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 102 RRYDNIVLTHVLEHIDD--------------------------------------PVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp SCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CcccEEEEhhHHHhhcC--------------------------------------HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999999999999643 224677778 999999999999875
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhh----hccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEK----ARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~----~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
... ...... . ..|...... .+.......+.+.+++.++++++| |++.+.+.+.
T Consensus 144 ~~~-----------~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 200 (250)
T 2p7i_A 144 ANA-----------VSRQIA-V-----KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-LQVTYRSGIF 200 (250)
T ss_dssp TTC-----------HHHHHH-H-----HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-CEEEEEEEEE
T ss_pred hHH-----------HHHHHH-H-----HcCccccchhcccccccccccccCCHHHHHHHHHHCC-CeEEEEeeeE
Confidence 543 111111 1 123322110 000111124579999999999999 9999888753
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=104.89 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=101.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..+..++ +.. + -+++..|+........-+.... .--|.. +++....+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~--------~~~-------~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~---~d~~~~~~ 104 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAA--------EHG-------A-KKVLGIDLSERMLTEAKRKTTSPVVCYEQ---KAIEDIAI 104 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHH--------HTT-------C-SEEEEEESCHHHHHHHHHHCCCTTEEEEE---CCGGGCCC
T ss_pred CCCEEEEECCCCCHHHHHHH--------HcC-------C-CEEEEEECCHHHHHHHHHhhccCCeEEEE---cchhhCCC
Confidence 46899999999999888774 221 1 2899999977555544444332 112233 46666668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+|+|+.++||+. |...+|+.-++-|+|||+++++..
T Consensus 105 ~~~~fD~v~~~~~l~~~~--------------------------------------~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 105 EPDAYNVVLSSLALHYIA--------------------------------------SFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp CTTCEEEEEEESCGGGCS--------------------------------------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCeEEEEEchhhhhhh--------------------------------------hHHHHHHHHHHHcCCCcEEEEEeC
Confidence 899999999999999973 233577788899999999999865
Q ss_pred cCCCCCCC------CCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 216 TGPSGIPF------ADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 216 g~~~~~~~------~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
........ ...+....+ .|.....++... ..+..-....|.+|.+|+.++++++| |++..++...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~e~~ 217 (253)
T 3g5l_A 147 HPVFTADGRQDWYTDETGNKLHW-----PVDRYFNESMRT-SHFLGEDVQKYHRTVTTYIQTLLKNG-FQINSVIEPE 217 (253)
T ss_dssp CHHHHSSSSCSCEECSSCCEEEE-----EECCTTCCCEEE-EEETTEEEEEECCCHHHHHHHHHHTT-EEEEEEECCC
T ss_pred CCccccCccccceeccCCceEEE-----EeccccccceEE-EeeccccCccEecCHHHHHHHHHHcC-CeeeeeecCC
Confidence 32110000 000000000 000000000000 00001134557779999999999999 9998888764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=107.83 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=98.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCc-eEEecCCCCCchHHHHHhCCCC--c-------cccc-
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDF-QVFFNDHTENDFNTLFRTLPPR--K-------YYAA- 124 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~-~v~~nDLp~NDFn~lf~~l~~~--~-------~~~~- 124 (359)
....+|+|+|||+|..++.++ . +.+ +|+..|+..++...+-+.+... . -|++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~--------~---------~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~ 116 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAA--------C---------DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE 116 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTG--------G---------GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHH--------H---------hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence 346899999999998887653 1 122 6888888877666544322110 0 0111
Q ss_pred ---------------------ccCcccccC-CC---CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCH
Q 018250 125 ---------------------GVPGSFHGR-LF---PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMK 179 (359)
Q Consensus 125 ---------------------~vpgsfy~~-l~---p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~ 179 (359)
.+.++..+. .+ +.+++|+|+|+.+|||+..-+
T Consensus 117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~----------------------- 173 (263)
T 2a14_A 117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL----------------------- 173 (263)
T ss_dssp HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH-----------------------
T ss_pred cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCH-----------------------
Confidence 123344332 22 367999999999999964311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc
Q 018250 180 GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP 259 (359)
Q Consensus 180 ~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P 259 (359)
.|+...|+.-++-|||||+|+++.....+.. . .| ....+
T Consensus 174 -----------~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~---------~-------------~g--------~~~~~ 212 (263)
T 2a14_A 174 -----------DAYRAALCNLASLLKPGGHLVTTVTLRLPSY---------M-------------VG--------KREFS 212 (263)
T ss_dssp -----------HHHHHHHHHHHTTEEEEEEEEEEEESSCCEE---------E-------------ET--------TEEEE
T ss_pred -----------HHHHHHHHHHHHHcCCCcEEEEEEeecCccc---------e-------------eC--------CeEee
Confidence 2566788888999999999999975433210 0 11 01234
Q ss_pred ccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 260 AYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 260 ~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.+..+.+|+.+.++++| |++..++...
T Consensus 213 ~~~~~~~~l~~~l~~aG-F~i~~~~~~~ 239 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAG-FDIEQLLHSP 239 (263)
T ss_dssp CCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence 45679999999999999 9999988864
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.8e-10 Score=100.08 Aligned_cols=142 Identities=13% Similarity=0.041 Sum_probs=100.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..++ +.. .|..+++..|+........-+.+.. .. +.-+.+++...
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~--------~~~------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~~d~~~~ 100 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLS--------KMV------GEKGKVYAIDVQEEMVNYAWEKVNKLGLKN--VEVLKSEENKI 100 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHH--------HHH------TTTCEEEEEESCHHHHHHHHHHHHHHTCTT--EEEEECBTTBC
T ss_pred CCCEEEEEecCCCHHHHHHH--------HHh------CCCcEEEEEECCHHHHHHHHHHHHHcCCCc--EEEEecccccC
Confidence 35799999999999999885 332 2456899999977555444333221 11 11223466566
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.++++++|+|+++.++||+.+ ...+|+.-++-|+|||++++.
T Consensus 101 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 101 PLPDNTVDFIFMAFTFHELSE--------------------------------------PLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp SSCSSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCeeEEEeehhhhhcCC--------------------------------------HHHHHHHHHHHhCCCeEEEEE
Confidence 689999999999999999642 234677788999999999998
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
......... ......+.+.+++...++++| |++.+...+
T Consensus 143 ~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~ 181 (219)
T 3dh0_A 143 DWKKEERDK---------------------------------GPPPEEVYSEWEVGLILEDAG-IRVGRVVEV 181 (219)
T ss_dssp EECSSCCSS---------------------------------SCCGGGSCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred Eeccccccc---------------------------------CCchhcccCHHHHHHHHHHCC-CEEEEEEee
Confidence 876554210 011124568999999999999 998887765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=101.99 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=99.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..++ +. ..+++..|+........-+... +..+.+++.... +
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~d~~~~~-~ 99 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAML--------AA---------GFDVDATDGSPELAAEASRRLG-----RPVRTMLFHQLD-A 99 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHT-----SCCEECCGGGCC-C
T ss_pred CCCcEEEECCCCCHHHHHHH--------Hc---------CCeEEEECCCHHHHHHHHHhcC-----CceEEeeeccCC-C
Confidence 35799999999999988774 21 2488999987655444433321 111224554444 8
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++|++.. .|+..+|+.-++-|+|||++++++..
T Consensus 100 ~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 100 IDAYDAVWAHACLLHVPR------------------------------------DELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp CSCEEEEEECSCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcEEEEEecCchhhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 899999999999999641 25667888889999999999999764
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
..... .+.+...+.+.+.+++.++++++|.|++..++...
T Consensus 144 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 144 GEGEG-------------------------------RDKLARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp CSSCE-------------------------------ECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred CCccc-------------------------------ccccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 33210 01223345678999999999999878888877654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=104.95 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=100.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
....+|+|+|||+|..+..+++ .. ..+++..|+........-+...... -+.-+.+++....+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~--------~~--------~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~ 154 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLT--------KL--------YATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETATL 154 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHH--------HH--------CSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCCC
T ss_pred cCCCEEEEECCCcCHHHHHHHH--------hh--------cCEEEEEeCCHHHHHHHHHHhccCC-ceEEEEccHHHCCC
Confidence 3467999999999999987752 21 1268888887655554444443210 11122346656567
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+|+++.++|+++. .|+..+|+.-++-|+|||++++...
T Consensus 155 ~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 155 PPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCeEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8899999999999999642 1456688888999999999999886
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
....... . .....+.++++.++++++++++| |++.+++..
T Consensus 199 ~~~~~~~--------~----------------------~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 238 (254)
T 1xtp_A 199 CSTGDRF--------L----------------------VDKEDSSLTRSDIHYKRLFNESG-VRVVKEAFQ 238 (254)
T ss_dssp BC--CCE--------E----------------------EETTTTEEEBCHHHHHHHHHHHT-CCEEEEEEC
T ss_pred CCCcccc--------e----------------------ecccCCcccCCHHHHHHHHHHCC-CEEEEeeec
Confidence 4322110 0 00112345679999999999999 999888765
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=103.40 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=96.9
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~p 136 (359)
.+|+|+|||+|..+..+. +. +..+++..|+........-+.+... .--+.-+.+++.+..+|
T Consensus 45 ~~vLdiG~G~G~~~~~l~--------~~--------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALA--------KQ--------SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp EEEEEETCTTSHHHHHHH--------HH--------SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred CEEEEECCCCCHHHHHHH--------Hc--------CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 399999999999888874 22 2468899998765544443332210 00011223466666689
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++||+. |...+|+.-++-|+|||++++...-
T Consensus 109 ~~~~D~v~~~~~l~~~~--------------------------------------~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWE--------------------------------------DVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp TTCEEEEEEESCGGGCS--------------------------------------CHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccccEEEECchHhhcc--------------------------------------CHHHHHHHHHHhCCCCCEEEEEecc
Confidence 99999999999999963 2334777788999999999997632
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKART-FNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
... .+.+.+...+... . ..+.. +.......+.+++.++++++| |++.++...
T Consensus 151 ~~~----------~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~v~~~~~ 203 (219)
T 3dlc_A 151 GNK----------ELRDSISAEMIRK---N----PDWKEFNRKNISQENVERFQNVLDEIG-ISSYEIILG 203 (219)
T ss_dssp SSH----------HHHHHHHHHHHHH---C----TTHHHHHHHHSSHHHHHHHHHHHHHHT-CSSEEEEEE
T ss_pred CcH----------HHHHHHHHHHHHh---H----HHHHhhhhhccccCCHHHHHHHHHHcC-CCeEEEEec
Confidence 221 1222233222221 0 00000 001123348899999999999 987766643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.8e-10 Score=100.92 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=100.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..+..+. +. ..+++..|+........-+.... +--|+. +++.+..+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~---~d~~~~~~ 112 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLS--------RT---------GYKAVGVDISEVMIQKGKERGEGPDLSFIK---GDLSSLPF 112 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHTTTCBTTEEEEE---CBTTBCSS
T ss_pred CCCeEEEEcCCCCHHHHHHH--------Hc---------CCeEEEEECCHHHHHHHHhhcccCCceEEE---cchhcCCC
Confidence 35699999999999988774 21 24788999876444333322211 112232 46666668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+|+++.++||+.+ ...+|+.-++-|+|||+++++..
T Consensus 113 ~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWTEE--------------------------------------PLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp CTTCEEEEEEESCTTSSSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccEEEEcChHhhccC--------------------------------------HHHHHHHHHHHhCCCeEEEEEEc
Confidence 8999999999999999632 22467778899999999999997
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
+....... . .+. ............+.+++..+++++| |++...+.+-
T Consensus 155 ~~~~~~~~-----~--------~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 201 (242)
T 3l8d_A 155 GPTAKPRE-----N--------SYP-----------RLYGKDVVCNTMMPWEFEQLVKEQG-FKVVDGIGVY 201 (242)
T ss_dssp CTTCGGGG-----G--------GGG-----------GGGTCCCSSCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred CCcchhhh-----h--------hhh-----------hhccccccccCCCHHHHHHHHHHcC-CEEEEeeccc
Confidence 66542110 0 001 0112233456689999999999999 9998887663
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=102.79 Aligned_cols=140 Identities=10% Similarity=0.018 Sum_probs=96.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----------------Cc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----------------RK 120 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----------------~~ 120 (359)
...+|+|+|||+|.++..++ ++ ..+|+..|+...+-....+.... +-
T Consensus 22 ~~~~vLD~GCG~G~~~~~la--------~~---------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v 84 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLS--------GQ---------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 84 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHH--------HH---------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred CCCEEEEeCCCCcHhHHHHH--------HC---------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc
Confidence 45799999999999999875 22 24788888888776665544221 11
Q ss_pred ccccccCcccccCCCCC-CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 018250 121 YYAAGVPGSFHGRLFPK-STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNA 199 (359)
Q Consensus 121 ~~~~~vpgsfy~~l~p~-~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~ 199 (359)
-|.. +++.+..+++ +++|+|++..++|++. . .|...+|+.
T Consensus 85 ~~~~---~d~~~l~~~~~~~fD~v~~~~~l~~l~---~---------------------------------~~~~~~l~~ 125 (203)
T 1pjz_A 85 EIWC---GDFFALTARDIGHCAAFYDRAAMIALP---A---------------------------------DMRERYVQH 125 (203)
T ss_dssp EEEE---ECCSSSTHHHHHSEEEEEEESCGGGSC---H---------------------------------HHHHHHHHH
T ss_pred EEEE---CccccCCcccCCCEEEEEECcchhhCC---H---------------------------------HHHHHHHHH
Confidence 1222 4665555554 8999999999999963 1 134457888
Q ss_pred HHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCcee
Q 018250 200 RAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 200 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
-++-|+|||++++.+...+.. ...-|.+..+.+|+++.++. | |+
T Consensus 126 ~~r~LkpgG~~~l~~~~~~~~----------------------------------~~~~~~~~~~~~el~~~~~~-g-f~ 169 (203)
T 1pjz_A 126 LEALMPQACSGLLITLEYDQA----------------------------------LLEGPPFSVPQTWLHRVMSG-N-WE 169 (203)
T ss_dssp HHHHSCSEEEEEEEEESSCSS----------------------------------SSSSCCCCCCHHHHHHTSCS-S-EE
T ss_pred HHHHcCCCcEEEEEEEecCcc----------------------------------ccCCCCCCCCHHHHHHHhcC-C-cE
Confidence 899999999966655422210 01123345789999999987 8 99
Q ss_pred EeEEEEeec
Q 018250 280 MERMQQLDQ 288 (359)
Q Consensus 280 i~~le~~~~ 288 (359)
+..++....
T Consensus 170 i~~~~~~~~ 178 (203)
T 1pjz_A 170 VTKVGGQDT 178 (203)
T ss_dssp EEEEEESSC
T ss_pred EEEeccccc
Confidence 988887653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=110.17 Aligned_cols=223 Identities=12% Similarity=0.102 Sum_probs=126.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC------CCCcccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL------PPRKYYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l------~~~~~~~~~vpgsf 130 (359)
...+|+|+|||+|..+..++ +.+ .+..+|+..|+........-+.+ ..+--|.. +++
T Consensus 36 ~~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~---~d~ 98 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMA--------QEL------KPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKI---SSS 98 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHH--------HHS------SCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEE---CCT
T ss_pred CCCEEEEECCCCCHHHHHHH--------HhC------CCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEE---cCH
Confidence 46899999999999999885 222 13468999998775554443321 11112332 355
Q ss_pred ccCCCCC------CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018250 131 HGRLFPK------STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL 204 (359)
Q Consensus 131 y~~l~p~------~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 204 (359)
.+..+++ +++|+|+|+.++||+ + +..+|+.-++-|
T Consensus 99 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--------------------------------------~~~~l~~~~~~L 139 (299)
T 3g5t_A 99 DDFKFLGADSVDKQKIDMITAVECAHWF-D--------------------------------------FEKFQRSAYANL 139 (299)
T ss_dssp TCCGGGCTTTTTSSCEEEEEEESCGGGS-C--------------------------------------HHHHHHHHHHHE
T ss_pred HhCCccccccccCCCeeEEeHhhHHHHh-C--------------------------------------HHHHHHHHHHhc
Confidence 4444666 899999999999997 2 123677788999
Q ss_pred ccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccC-CCHHHHHHHHHhCCce-----
Q 018250 205 VPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYF-PYVEELESLIQRNGHF----- 278 (359)
Q Consensus 205 ~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~-ps~~E~~~~i~~~G~F----- 278 (359)
+|||+|++...+.+..... ..+...+..+... +....|++. |..+.+++.+++.| |
T Consensus 140 kpgG~l~i~~~~~~~~~~~---------~~~~~~~~~~~~~--------~~~~~~~w~~p~~~~~~~~l~~~g-fp~~~f 201 (299)
T 3g5t_A 140 RKDGTIAIWGYADPIFPDY---------PEFDDLMIEVPYG--------KQGLGPYWEQPGRSRLRNMLKDSH-LDPELF 201 (299)
T ss_dssp EEEEEEEEEEEEEEECTTC---------GGGTTHHHHHHHC--------TTTTGGGSCTTHHHHHHTTTTTCC-CCTTTE
T ss_pred CCCcEEEEEecCCccccCc---------HHHHHHHHHhccC--------cccccchhhchhhHHHHHhhhccC-CChHHc
Confidence 9999999976654321100 0111122332211 012334444 88999999999988 6
Q ss_pred eEeEEEEeec-------------CCCCCC---CChhHHHHHHHHHhh--hhhhh-ccCH--HHHHHHHHHHHHHHHHHhh
Q 018250 279 AMERMQQLDQ-------------PMRHKT---FPAQFYLSHLRAVLE--GLIGK-HFGE--ELLENIFNHINTKEAEILS 337 (359)
Q Consensus 279 ~i~~le~~~~-------------~~~~~~---~~~~~v~~~iRa~~~--~~l~~-~~~e--~i~delf~r~~~~~~~~~~ 337 (359)
.-.+...+.. ...+.. .+...+.+++++|.. ..... .-++ ++++++.+++ +++.+.
T Consensus 202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~ 278 (299)
T 3g5t_A 202 HDIQVSYFCAEDVRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIKES---LRRRPE 278 (299)
T ss_dssp EEEEEEEECGGGGGCHHHHHHCSSCCCCCEEEECHHHHHHHHTTSHHHHHHHHCGGGTTSCCHHHHHHHHH---HHHCTT
T ss_pred CcceEEEecccccccccccccCCCCceeeeccccHHHHHHHHHHhHHHHHHHhcccCCchhhHHHHHHHHH---HHhccC
Confidence 3334444422 111110 234578888887654 22220 1222 5555555541 333322
Q ss_pred hh-hcCCcceEEEEEEEEec
Q 018250 338 IH-NGKLHKEIEVFVVLKRI 356 (359)
Q Consensus 338 ~~-~~~~~~~~~~~~~l~r~ 356 (359)
.. ..+.+-...+++++.||
T Consensus 279 ~~~~~~~~~~w~~~~~~~rk 298 (299)
T 3g5t_A 279 LSTNTKIEVVWNTFYKLGKR 298 (299)
T ss_dssp CCTTCCEEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEecceeeeEec
Confidence 21 11223456677777765
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-09 Score=95.51 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=98.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccccc--CC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHG--RL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~--~l 134 (359)
...+|+|+|||+|..+..+. + .+ .+++..|+........-+... . + +.+++.. ..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~--------~--------~~-~~~~~~D~~~~~~~~~~~~~~--~-~---~~~d~~~~~~~ 88 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIK--------E--------NG-TRVSGIEAFPEAAEQAKEKLD--H-V---VLGDIETMDMP 88 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHH--------T--------TT-CEEEEEESSHHHHHHHHTTSS--E-E---EESCTTTCCCC
T ss_pred CCCcEEEeCCCCCHHHHHHH--------h--------cC-CeEEEEeCCHHHHHHHHHhCC--c-E---EEcchhhcCCC
Confidence 45799999999999998774 1 12 588889987644433322221 1 2 2234433 44
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++++|+++++.++|++... ..+|+.-.+-|+|||+++++.
T Consensus 89 ~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 89 YEEEQFDCVIFGDVLEHLFDP--------------------------------------WAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp SCTTCEEEEEEESCGGGSSCH--------------------------------------HHHHHHTGGGEEEEEEEEEEE
T ss_pred CCCCccCEEEECChhhhcCCH--------------------------------------HHHHHHHHHHcCCCCEEEEEe
Confidence 788999999999999996531 246777789999999999998
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhc-cCCccccCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKAR-TFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d-~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
..... +..+. .+..... ...... .-.....+.+.+|+.++++++| |++..++....
T Consensus 131 ~~~~~------------~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 187 (230)
T 3cc8_A 131 PNVSH------------ISVLA----PLLAGNW-TYTEYGLLDKTHIRFFTFNEMLRMFLKAG-YSISKVDRVYV 187 (230)
T ss_dssp ECTTS------------HHHHH----HHHTTCC-CCBSSSTTBTTCCCCCCHHHHHHHHHHTT-EEEEEEEEEEC
T ss_pred CCcch------------HHHHH----HHhcCCc-eeccCCCCCcceEEEecHHHHHHHHHHcC-CeEEEEEeccc
Confidence 65432 11111 1111111 100000 0012235689999999999999 99999888754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-08 Score=97.19 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=98.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C-cccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R-KYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~-~~~~~~vpgsfy 131 (359)
...+|+|+|||+|..+..++ +.+ ..+|+..|+........-+.... . --+.. +++.
T Consensus 90 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~ 150 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAV--------ERF--------DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGWE 150 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCGG
T ss_pred CcCEEEEEcccchHHHHHHH--------HHC--------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CChH
Confidence 35799999999999988774 222 13788888876555444333221 1 11222 3442
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+ +| +++|+|+|+.++|++.. .|...+|+.-.+-|+|||+++
T Consensus 151 ~--~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~ 191 (318)
T 2fk8_A 151 D--FA-EPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMT 191 (318)
T ss_dssp G--CC-CCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEE
T ss_pred H--CC-CCcCEEEEeChHHhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEE
Confidence 2 24 89999999999999642 145567888889999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc-ccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP-AYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P-~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+..+...+......... .+ ..-...+.+.... ...| .++|+.+++.+.++++| |++..++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~ 254 (318)
T 2fk8_A 192 VQSSVSYHPYEMAARGK-KL-SFETARFIKFIVT----------EIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSL 254 (318)
T ss_dssp EEEEECCCHHHHHTTCH-HH-HHHHHHHHHHHHH----------HTSTTCCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred EEEeccCCchhhhhccc-cc-cccccchhhHHHH----------hcCCCCcCCCHHHHHHHHHhCC-CEEEEEEec
Confidence 99987664210000000 00 0000111111111 1122 36789999999999999 999877765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.4e-10 Score=104.08 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=105.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++ .. ..|..+++..|+........-+....... -+.-+.+++.+..
T Consensus 118 ~~~~vLDiGcG~G~~~~~la--------~~------~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALD--------YS------ACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD 183 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSC--------CT------TCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC
T ss_pred CCCEEEEecCCCCHHHHHHH--------Hh------cCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC
Confidence 45789999999999888662 01 14567999999977665555444432110 0222335777766
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++ +++|+|+|+.++||+... .....+|+.-++-|+|||++++..
T Consensus 184 ~~-~~fD~v~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 184 TR-EGYDLLTSNGLNIYEPDD-----------------------------------ARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp CC-SCEEEEECCSSGGGCCCH-----------------------------------HHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cc-CCeEEEEECChhhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 77 999999999999985421 123347778889999999999999
Q ss_pred ccCCCCCCCCCcc-----hhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTV-----QGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~-----~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.+++........+ ...........+..... ..-..+++.+|+.+.++++| |++.+++..
T Consensus 228 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~aG-F~~v~~~~~ 291 (305)
T 3ocj_A 228 LTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQ------------PRWNALRTHAQTRAQLEEAG-FTDLRFEDD 291 (305)
T ss_dssp CCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTC------------CSCCCCCCHHHHHHHHHHTT-CEEEEEECC
T ss_pred cCCCCcccccccceeeccccchhhhhhhHHHHHHh------------hhhhccCCHHHHHHHHHHCC-CEEEEEEcc
Confidence 8765432111110 00001111112221111 11115689999999999999 999888763
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-09 Score=95.35 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=91.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..+..+... +..|+........-+. . +..+.+++....+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~---------------------~~vD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~ 100 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK---------------------IGVEPSERMAEIARKR----G--VFVLKGTAENLPLKD 100 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC---------------------EEEESCHHHHHHHHHT----T--CEEEECBTTBCCSCT
T ss_pred CCcEEEeCCCCCHHHHHHHHH---------------------hccCCCHHHHHHHHhc----C--CEEEEcccccCCCCC
Confidence 568999999999998877310 4445443332222111 0 111123444445788
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|+|+++.++||+.+ ...+|+.-.+-|+|||++++..+..
T Consensus 101 ~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 101 ESFDFALMVTTICFVDD--------------------------------------PERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp TCEEEEEEESCGGGSSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred CCeeEEEEcchHhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 89999999999999642 2246777788999999999998755
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.+ .+.. .+..+ ..+ ..+.....+.+.+++.+++++.| |++..+....
T Consensus 143 ~~-----------~~~~---~~~~~-~~~-------~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~~ 189 (219)
T 1vlm_A 143 ES-----------FLGR---EYEKN-KEK-------SVFYKNARFFSTEELMDLMRKAG-FEEFKVVQTL 189 (219)
T ss_dssp SS-----------HHHH---HHHHT-TTC--------CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEEEC
T ss_pred cc-----------HHHH---HHHHH-hcC-------cchhcccccCCHHHHHHHHHHCC-CeEEEEeccc
Confidence 43 1111 11111 111 12333456789999999999999 9998888764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-08 Score=94.73 Aligned_cols=166 Identities=7% Similarity=-0.019 Sum_probs=100.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCC------chHHHHHhCCCCc--ccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEN------DFNTLFRTLPPRK--YYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~N------DFn~lf~~l~~~~--~~~~~vpg 128 (359)
...+|+|+|||+|..+..++ +++ .|..+++..|+... .....-+.+.... --+.-+.+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~--------~~~------g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~ 108 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLA--------DQV------GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHH------CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECS
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEEC
Confidence 35799999999999998874 332 13468999999876 4444333322100 00111223
Q ss_pred c-cc--cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018250 129 S-FH--GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV 205 (359)
Q Consensus 129 s-fy--~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 205 (359)
+ +. ...+|++++|+|+|+.++|++... ..+++...+-++
T Consensus 109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~~~~~~~l~~ 150 (275)
T 3bkx_A 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASA--------------------------------------NALALLFKNMAA 150 (275)
T ss_dssp CCTTTCCGGGTTCCCSEEEEESCGGGSSCH--------------------------------------HHHHHHHHHHTT
T ss_pred ChhhhccCCCCCCCEEEEEEccchhhCCCH--------------------------------------HHHHHHHHHHhC
Confidence 3 32 233678999999999999996531 124445555556
Q ss_pred cCceeEEEeccCCCCCCCCCcchhHHHHHHHH-HHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 206 PGGLMVFSLITGPSGIPFADTVQGATYNFLGS-CLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 206 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~-al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
|||++++........... ....++..+.. .+... . .+.....+.+++.+++.++++++| |++.+.+
T Consensus 151 ~gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~s~~~l~~~l~~aG-f~~~~~~ 217 (275)
T 3bkx_A 151 VCDHVDVAEWSMQPTALD---QIGHLQAAMIQGLLYAI-A--------PSDVANIRTLITPDTLAQIAHDNT-WTYTAGT 217 (275)
T ss_dssp TCSEEEEEEECSSCSSGG---GHHHHHHHHHHHHHHHH-S--------CCTTCSCCCCCCHHHHHHHHHHHT-CEEEECC
T ss_pred CCCEEEEEEecCCCCchh---hhhHHHHHHHHHHHhhc-c--------ccccccccccCCHHHHHHHHHHCC-CeeEEEE
Confidence 699999998776543210 11111121211 11111 0 112234456899999999999999 9998888
Q ss_pred Eee
Q 018250 285 QLD 287 (359)
Q Consensus 285 ~~~ 287 (359)
.+.
T Consensus 218 ~~~ 220 (275)
T 3bkx_A 218 IVE 220 (275)
T ss_dssp CBC
T ss_pred Eec
Confidence 773
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.7e-10 Score=102.42 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=101.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..+. +. +..+++..|+........-+..+... .-+.-+.+++.+..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~--------~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 127 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYE--------RA--------GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 127 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHH--------HH--------TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC
T ss_pred CCCeEEEECCCCCHHHHHHH--------HC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc
Confidence 35799999999999988763 22 12388999987766554444332210 00112234555555
Q ss_pred C-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 F-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+ +++++|+|+++.++||+-.. ..|...+|+.-++-|+|||+++++
T Consensus 128 ~~~~~~fD~v~~~~~l~~~~~~----------------------------------~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 128 MDLGKEFDVISSQFSFHYAFST----------------------------------SESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp CCCSSCEEEEEEESCGGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCCCcCEEEECchhhhhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6 68999999999999994210 125667888889999999999999
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCC--------------CCh---hhh-----cc-CCccccCCCHHHHHH
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGV--------------ISE---EKA-----RT-FNVPAYFPYVEELES 270 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGl--------------i~~---e~~-----d~-f~~P~y~ps~~E~~~ 270 (359)
.+.... +... +. .... ++. .+. +. -..|.++.+.+|++.
T Consensus 174 ~~~~~~-----------~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ 235 (298)
T 1ri5_A 174 VPSRDV-----------ILER----YK---QGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVD 235 (298)
T ss_dssp EECHHH-----------HHHH----HH---HTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHH
T ss_pred ECCHHH-----------HHHH----Hc---cCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHH
Confidence 864321 1111 11 1000 000 000 00 123457789999999
Q ss_pred HHHhCCceeEeEEEEe
Q 018250 271 LIQRNGHFAMERMQQL 286 (359)
Q Consensus 271 ~i~~~G~F~i~~le~~ 286 (359)
+++++| |++...+.+
T Consensus 236 ll~~aG-f~~v~~~~~ 250 (298)
T 1ri5_A 236 GFKRLG-LSLVERKGF 250 (298)
T ss_dssp HHHTTT-EEEEEEEEH
T ss_pred HHHHcC-CEEEEecCH
Confidence 999999 999888766
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5e-09 Score=98.03 Aligned_cols=211 Identities=10% Similarity=-0.010 Sum_probs=115.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCC-CceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVP-DFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL 134 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p-~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l 134 (359)
....+|+|+|||+|..+..++ +. .| ..+++..|+........-+.......-+.-+.+++.+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 85 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLM--------PL-------LPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 85 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHT--------TT-------SCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred CCCCeEEEecCCCCHHHHHHH--------Hh-------CCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC
Confidence 346899999999999988773 22 23 368999999775554433332211101111224555544
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+ ++++|+|+++.++|++.+ +..+|+.-.+-|+|||++++..
T Consensus 86 ~-~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 86 L-NDKYDIAICHAFLLHMTT--------------------------------------PETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp C-SSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred c-CCCeeEEEECChhhcCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEe
Confidence 5 479999999999999642 3346777889999999999887
Q ss_pred ccCC----CCCCCCCcc-hhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee--
Q 018250 215 ITGP----SGIPFADTV-QGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD-- 287 (359)
Q Consensus 215 ~g~~----~~~~~~~~~-~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~-- 287 (359)
+... .....+.+. .......+...+.+.... . ...+++.+++..+++++| |+..+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~l~~~l~~aG-F~~v~~~~~~~~ 193 (284)
T 3gu3_A 127 PHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR----------N--GKDGNIGMKIPIYLSELG-VKNIECRVSDKV 193 (284)
T ss_dssp CCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHH----------T--CCCTTGGGTHHHHHHHTT-CEEEEEEECCCC
T ss_pred cchhcccccceecCcchhhccchHHHHHHHHHHhhh----------h--cccccHHHHHHHHHHHcC-CCeEEEEEcCCc
Confidence 6510 000000000 000012222222221111 1 113455678999999999 9887764432
Q ss_pred --cCCCCCCCChhHHHHH------------HHHHhhhhhhhccCHHHHHHHHHHHHHHHH
Q 018250 288 --QPMRHKTFPAQFYLSH------------LRAVLEGLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 288 --~~~~~~~~~~~~v~~~------------iRa~~~~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
.+....+.+++.+... +..+...++...+..+-+..++.+..+.++
T Consensus 194 ~~~~~~~~~~d~~~l~~~l~~~G~~~~~~~~~~~~~~l~~~g~~~~e~~~~~~~~~~~~~ 253 (284)
T 3gu3_A 194 NFLDSNMHHNDKNDLYQSLKEEGIAGDPGDKQQFVERLIARGLTYDNALAQYEAELRFFK 253 (284)
T ss_dssp EEECTTCCSHHHHHHHHHHHHTTTTCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHhccccCCcccHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 2322222122222222 233444444444566666666666655444
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-10 Score=98.02 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=96.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC-CC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL-FP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l-~p 136 (359)
..+|+|+|||+|..+..+. +. ..+++..|+........-+. +. ..+..+....+.... .+
T Consensus 53 ~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~-~~-~~~~~~~~~~~~~~~~~~ 113 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALA--------DR---------GIEAVGVDGDRTLVDAARAA-GA-GEVHLASYAQLAEAKVPV 113 (227)
T ss_dssp CSEEEEETCTTCHHHHHHH--------TT---------TCEEEEEESCHHHHHHHHHT-CS-SCEEECCHHHHHTTCSCC
T ss_pred CCEEEEeCCCCCHHHHHHH--------HC---------CCEEEEEcCCHHHHHHHHHh-cc-cccchhhHHhhccccccc
Confidence 4899999999999888774 11 24889999876554433332 21 112221111121223 34
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|+.++| .. |...+|+.-++-|+|||++++..+.
T Consensus 114 ~~~fD~v~~~~~l~-~~--------------------------------------~~~~~l~~~~~~L~pgG~l~~~~~~ 154 (227)
T 3e8s_A 114 GKDYDLICANFALL-HQ--------------------------------------DIIELLSAMRTLLVPGGALVIQTLH 154 (227)
T ss_dssp CCCEEEEEEESCCC-SS--------------------------------------CCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCccEEEECchhh-hh--------------------------------------hHHHHHHHHHHHhCCCeEEEEEecC
Confidence 55699999999999 22 1224777788999999999999986
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
....... .. ...|....-.|... .....++++++.+|+.++++++| |++..++..
T Consensus 155 ~~~~~~~-~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 209 (227)
T 3e8s_A 155 PWSVADG-DY---------QDGWREESFAGFAG----DWQPMPWYFRTLASWLNALDMAG-LRLVSLQEP 209 (227)
T ss_dssp TTTTCTT-CC---------SCEEEEECCTTSSS----CCCCEEEEECCHHHHHHHHHHTT-EEEEEEECC
T ss_pred ccccCcc-cc---------ccccchhhhhcccc----CcccceEEEecHHHHHHHHHHcC-CeEEEEecC
Confidence 6542110 00 00000000000000 01246778999999999999999 999988874
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.01 E-value=8.3e-10 Score=100.50 Aligned_cols=146 Identities=14% Similarity=0.078 Sum_probs=100.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC-cccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR-KYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~-~~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..+..++ +.. ..+++..|+........-+..... ..-+.-+.+++....+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~--------~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 142 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLL--------LPL--------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP 142 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTT--------TTT--------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC
T ss_pred CCCEEEEECCCCCHHHHHHH--------Hhc--------CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC
Confidence 46799999999999988774 111 247889998776655554444321 1011122346656667
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++++|+|+++.++|++.+ .++..+|+.-++-|+|||++++...
T Consensus 143 ~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 143 EPDSYDVIWIQWVIGHLTD------------------------------------QHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp CSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 8889999999999999642 1345678888899999999999876
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
...... ++ +. ....+.++.+++.++++++| |++...+..
T Consensus 187 ~~~~~~---------~~---------------------~~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 225 (241)
T 2ex4_A 187 MAQEGV---------IL---------------------DD-VDSSVCRDLDVVRRIICSAG-LSLLAEERQ 225 (241)
T ss_dssp EBSSSE---------EE---------------------ET-TTTEEEEBHHHHHHHHHHTT-CCEEEEEEC
T ss_pred cCCCcc---------ee---------------------cc-cCCcccCCHHHHHHHHHHcC-CeEEEeeec
Confidence 544310 00 00 01234569999999999999 999888775
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.3e-09 Score=98.35 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=97.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~ 133 (359)
.+..+|+|+|||+|..+..++ +++ |..+++.-|+| ......-+.+... .--+.-+.++|+ .
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~ 230 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALL--------TAH-------EDLSGTVLDLQ-GPASAAHRRFLDTGLSGRAQVVVGSFF-D 230 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCTT-S
T ss_pred CCCCEEEEeCCChhHHHHHHH--------HHC-------CCCeEEEecCH-HHHHHHHHhhhhcCcCcCeEEecCCCC-C
Confidence 346899999999998888774 332 45688888994 3433332222110 011233446887 4
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|. ++|++++..+||..++ .+...+|+.-++-|+|||++++.
T Consensus 231 ~~p~-~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 231 PLPA-GAGGYVLSAVLHDWDD------------------------------------LSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp CCCC-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCC-CCcEEEEehhhccCCH------------------------------------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 5676 8999999999996432 13456888889999999999997
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
-.-.++..+ ...++..- |+..| ...+|.+|++++++++| |++.++...
T Consensus 274 e~~~~~~~~------~~~~d~~~-----~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~ 321 (332)
T 3i53_A 274 EAVAGDEHA------GTGMDLRM-----LTYFG-------------GKERSLAELGELAAQAG-LAVRAAHPI 321 (332)
T ss_dssp ECCCC---C------CHHHHHHH-----HHHHS-------------CCCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred eecCCCCCc------cHHHHHHH-----HhhCC-------------CCCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence 764443211 11222111 11111 14679999999999999 999887654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=99.43 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=96.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------------------
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------------------ 118 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------------------ 118 (359)
...+|||+|||+|.++..++ ++ ..+|+..|+....-....+....
T Consensus 68 ~~~~vLD~GCG~G~~~~~La--------~~---------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFA--------DR---------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 130 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHH--------HT---------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCCeEEEeCCCCcHHHHHHH--------HC---------CCeEEEEECCHHHHHHHHHhccccccccccccccccccccc
Confidence 35799999999999998884 22 25899999988776665544320
Q ss_pred ---CcccccccCcccccCCCCC-CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHH
Q 018250 119 ---RKYYAAGVPGSFHGRLFPK-STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFE 194 (359)
Q Consensus 119 ---~~~~~~~vpgsfy~~l~p~-~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~ 194 (359)
+--|.. +++.+..+++ +++|+|++..+||++. .. +..
T Consensus 131 ~~~~i~~~~---~D~~~l~~~~~~~FD~V~~~~~l~~l~---~~---------------------------------~~~ 171 (252)
T 2gb4_A 131 SSGSISLYC---CSIFDLPRANIGKFDRIWDRGALVAIN---PG---------------------------------DHD 171 (252)
T ss_dssp TTSSEEEEE---SCTTTGGGGCCCCEEEEEESSSTTTSC---GG---------------------------------GHH
T ss_pred CCCceEEEE---CccccCCcccCCCEEEEEEhhhhhhCC---HH---------------------------------HHH
Confidence 111222 4666655554 8999999999999973 21 334
Q ss_pred HHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHh
Q 018250 195 SILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQR 274 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~ 274 (359)
.+++.-++-|+|||+|++..+..+.. ...-|.+..+.+|+.+.+..
T Consensus 172 ~~l~~~~~~LkpGG~l~l~~~~~~~~----------------------------------~~~g~~~~~~~~el~~~l~~ 217 (252)
T 2gb4_A 172 RYADIILSLLRKEFQYLVAVLSYDPT----------------------------------KHAGPPFYVPSAELKRLFGT 217 (252)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEECCTT----------------------------------SCCCSSCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCeEEEEEEEecCCc----------------------------------cCCCCCCCCCHHHHHHHhhC
Confidence 57778889999999997665432210 01123455789999999986
Q ss_pred CCceeEeEEEEeec
Q 018250 275 NGHFAMERMQQLDQ 288 (359)
Q Consensus 275 ~G~F~i~~le~~~~ 288 (359)
+ |++..++.++.
T Consensus 218 -~-f~v~~~~~~~~ 229 (252)
T 2gb4_A 218 -K-CSMQCLEEVDA 229 (252)
T ss_dssp -T-EEEEEEEEEEC
T ss_pred -C-eEEEEEecccc
Confidence 5 99999987753
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-10 Score=109.83 Aligned_cols=160 Identities=14% Similarity=0.227 Sum_probs=100.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----------Ccccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----------RKYYAAG 125 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----------~~~~~~~ 125 (359)
...+|+|+|||+|..+..+. +. +..+++..|+........-+.... +--|+.
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~--------~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~- 96 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWK--------KG--------RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT- 96 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEE-
T ss_pred CCCEEEEECCCCcHHHHHHH--------hc--------CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEE-
Confidence 45799999999999988774 11 235888888877655443332210 011222
Q ss_pred cCcccccCC----C--CCCceeEEEecCccccc-CCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 018250 126 VPGSFHGRL----F--PKSTLHVVNSFNAMHWL-SKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILN 198 (359)
Q Consensus 126 vpgsfy~~l----~--p~~s~d~~~S~~alHWL-s~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~ 198 (359)
++..... + +++++|+|+|+.++||+ ... .|...+|+
T Consensus 97 --~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------------------------------~~~~~~l~ 139 (313)
T 3bgv_A 97 --ADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESY-----------------------------------EQADMMLR 139 (313)
T ss_dssp --CCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSH-----------------------------------HHHHHHHH
T ss_pred --ecccccchhhhcccCCCCEEEEEEecchhhccCCH-----------------------------------HHHHHHHH
Confidence 3444332 5 35699999999999996 221 24556888
Q ss_pred HHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHH--cC-------CCChhhh------------ccCC
Q 018250 199 ARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAK--MG-------VISEEKA------------RTFN 257 (359)
Q Consensus 199 ~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~--eG-------li~~e~~------------d~f~ 257 (359)
.-++-|+|||++++++++.+. +.+.|...-. -| ..+.+.+ ....
T Consensus 140 ~~~~~LkpgG~li~~~~~~~~---------------l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~ 204 (313)
T 3bgv_A 140 NACERLSPGGYFIGTTPNSFE---------------LIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVD 204 (313)
T ss_dssp HHHTTEEEEEEEEEEEECHHH---------------HHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---C
T ss_pred HHHHHhCCCcEEEEecCChHH---------------HHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCccc
Confidence 889999999999999875421 1112221000 00 0011111 2235
Q ss_pred ccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 258 VPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 258 ~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.|.|..+.+++.+++++.| |++.....+
T Consensus 205 ~~~~~~~~~~~~~l~~~~G-~~~v~~~~f 232 (313)
T 3bgv_A 205 VPEFLVYFPLLNEMAKKYN-MKLVYKKTF 232 (313)
T ss_dssp CEEECCCHHHHHHHGGGGT-EEEEEEEEH
T ss_pred CcceEEcHHHHHHHHHHcC-cEEEEecCH
Confidence 6778889999999999999 999887765
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-09 Score=100.32 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=99.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~ 133 (359)
....+|+|+|||+|..+..++ ++ .|..+++.-|+ .......-+.+... .--+.-+.++|+ .
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~ 263 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVL--------DA-------FPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-E 263 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-T
T ss_pred ccCcEEEEeCCCccHHHHHHH--------HH-------CCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-C
Confidence 346899999999999888774 33 25678999999 43333332222110 001233346887 5
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|. ++|++++..+||+.++ .+...+|+.-++-|+|||++++.
T Consensus 264 ~~p~-~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 264 TIPD-GADVYLIKHVLHDWDD------------------------------------DDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp CCCS-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCC-CceEEEhhhhhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEEE
Confidence 5676 8999999999998542 12335788889999999999997
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
-...++.... . ....+ +.-|+..| -..+|.+|++++++++| |++.++..
T Consensus 307 e~~~~~~~~~-------~-~~~~d-~~~~~~~~-------------g~~~t~~e~~~ll~~aG-f~~~~~~~ 355 (369)
T 3gwz_A 307 DNLIDERPAA-------S-TLFVD-LLLLVLVG-------------GAERSESEFAALLEKSG-LRVERSLP 355 (369)
T ss_dssp EEBCCSSCCH-------H-HHHHH-HHHHHHHS-------------CCCBCHHHHHHHHHTTT-EEEEEEEE
T ss_pred EeccCCCCCC-------c-hhHhh-HHHHhhcC-------------CccCCHHHHHHHHHHCC-CeEEEEEE
Confidence 7655442110 0 11111 11122222 14578999999999999 99988865
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-09 Score=100.79 Aligned_cols=150 Identities=21% Similarity=0.139 Sum_probs=97.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC-CCCc--ccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL-PPRK--YYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l-~~~~--~~~~~vpgsfy~ 132 (359)
+...+|+|+|||+|..+..++ ++ .|..+++.-|+|.. . .+.. .... --+.-+.|+|+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~~-~---~~~~~~~~~~~~~v~~~~~d~~- 242 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVL--------RE-------HPGLQGVLLDRAEV-V---ARHRLDAPDVAGRWKVVEGDFL- 242 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHH--------HH-------CTTEEEEEEECHHH-H---TTCCCCCGGGTTSEEEEECCTT-
T ss_pred cCCceEEEECCccCHHHHHHH--------HH-------CCCCEEEEecCHHH-h---hcccccccCCCCCeEEEecCCC-
Confidence 346899999999999998884 33 35678999999641 1 1111 1101 11333457887
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..+| ++|+++++.+||++++ .+...+|+.-++.|+|||++++
T Consensus 243 ~~~p--~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~LkpgG~l~i 284 (348)
T 3lst_A 243 REVP--HADVHVLKRILHNWGD------------------------------------EDSVRILTNCRRVMPAHGRVLV 284 (348)
T ss_dssp TCCC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCC--CCcEEEEehhccCCCH------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 5567 9999999999996432 1334688888999999999998
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.-...++... .. . ....+. .-++..| -..+|.+|++++++++| |++.++..
T Consensus 285 ~e~~~~~~~~---~~---~-~~~~d~-~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~ 335 (348)
T 3lst_A 285 IDAVVPEGND---AH---Q-SKEMDF-MMLAART-------------GQERTAAELEPLFTAAG-LRLDRVVG 335 (348)
T ss_dssp EECCBCSSSS---CC---H-HHHHHH-HHHHTTS-------------CCCCBHHHHHHHHHHTT-EEEEEEEE
T ss_pred EEeccCCCCC---cc---h-hhhcCh-hhhhcCC-------------CcCCCHHHHHHHHHHCC-CceEEEEE
Confidence 7664443211 01 1 111111 1121111 24678999999999999 99988766
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.99 E-value=7.6e-10 Score=99.97 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=74.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..++ +. ..+++..|+........-+..+....-+.-+.+++.+..+|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 99 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLC--------PK---------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN 99 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHG--------GG---------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS
T ss_pred CCCeEEEeCCCCCHHHHHHH--------HC---------CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc
Confidence 45799999999999998774 11 24788999877665544433321110122223466555566
Q ss_pred CCceeEEEecC-cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFN-AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~-alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|+++. ++||+... .|...+|+.-++-|+|||++++.+.
T Consensus 100 -~~fD~v~~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 100 -RKFDLITCCLDSTNYIIDS-----------------------------------DDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp -CCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CCceEEEEcCccccccCCH-----------------------------------HHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8999999998 99996321 2566788888999999999999876
Q ss_pred c
Q 018250 216 T 216 (359)
Q Consensus 216 g 216 (359)
.
T Consensus 144 ~ 144 (246)
T 1y8c_A 144 S 144 (246)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-09 Score=99.17 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=97.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l- 134 (359)
..+|+|+|||+|..+..++ ++ .|..+++.-|+|. .....-+.+.. -.--+.-+.++|.+..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVL--------RR-------HPQLTGQIWDLPT-TRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp CCEEEEETCTTCHHHHHHH--------HH-------CTTCEEEEEECGG-GHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred CCEEEEeCCCcCHHHHHHH--------Hh-------CCCCeEEEEECHH-HHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 6899999999999988874 33 3567899999954 33322222211 0011333456776554
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++.++|++++ .+...+|+.-++-|+|||++++.-
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDA------------------------------------REAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCccEEEEecccccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 35677999999999997532 134568888899999999999887
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
...++.... ..+..+.+... ++..+ -...++.+|++++++++| |++.+
T Consensus 288 ~~~~~~~~~------~~~~~~~~~~~-~~~~~------------~~~~~t~~e~~~ll~~aG-f~~~~ 335 (352)
T 3mcz_A 288 MTMNDDRVT------PALSADFSLHM-MVNTN------------HGELHPTPWIAGVVRDAG-LAVGE 335 (352)
T ss_dssp ECCCTTSSS------SHHHHHHHHHH-HHHST------------TCCCCCHHHHHHHHHHTT-CEEEE
T ss_pred eccCCCCCC------CchHHHhhHHH-HhhCC------------CCCcCCHHHHHHHHHHCC-Cceee
Confidence 655442110 11222222211 11110 013578999999999999 99877
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-09 Score=97.73 Aligned_cols=147 Identities=15% Similarity=0.170 Sum_probs=93.9
Q ss_pred cceEEEeecCCC---CcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSV---GPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~---G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~-~~~~~vpgsfy 131 (359)
+..+|+|+|||+ |..+..+ .+. .|..+|+..|+...+-...-+.+.. .. -|+. +++.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~--------~~~-------~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~---~D~~ 138 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVA--------QSV-------NPDARVVYVDIDPMVLTHGRALLAKDPNTAVFT---ADVR 138 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHH--------HHH-------CTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEE---CCTT
T ss_pred CCCEEEEECCCCCCCChHHHHH--------HHh-------CCCCEEEEEECChHHHHHHHHhcCCCCCeEEEE---eeCC
Confidence 347999999999 9654333 222 2457899999976555443333322 11 2333 4554
Q ss_pred c-----------CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018250 132 G-----------RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR 200 (359)
Q Consensus 132 ~-----------~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R 200 (359)
+ ..+|.+++|+++++.+|||+++- +...+|+.-
T Consensus 139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~------------------------------------~~~~~l~~~ 182 (274)
T 2qe6_A 139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD------------------------------------VVDRVVGAY 182 (274)
T ss_dssp CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT------------------------------------THHHHHHHH
T ss_pred CchhhhccchhhccCCCCCCEEEEEechhhhCCcH------------------------------------HHHHHHHHH
Confidence 2 23555689999999999997641 234577778
Q ss_pred HHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeE
Q 018250 201 AEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAM 280 (359)
Q Consensus 201 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i 280 (359)
++-|+|||+|+++.+..+. + ..+..+.+.+.. . ..|+++++.+|+.+.+ .| |++
T Consensus 183 ~~~L~pGG~l~i~~~~~~~--~-------~~~~~~~~~~~~---~-----------~~~~~~~s~~ei~~~l--~G-~~l 236 (274)
T 2qe6_A 183 RDALAPGSYLFMTSLVDTG--L-------PAQQKLARITRE---N-----------LGEGWARTPEEIERQF--GD-FEL 236 (274)
T ss_dssp HHHSCTTCEEEEEEEBCSS--C-------HHHHHHHHHHHH---H-----------HSCCCCBCHHHHHHTT--TT-CEE
T ss_pred HHhCCCCcEEEEEEecCcc--h-------HHHHHHHHHHHh---c-----------CCCCccCCHHHHHHHh--CC-CeE
Confidence 8999999999999987542 1 011222222221 1 1266789999999999 47 987
Q ss_pred eEE
Q 018250 281 ERM 283 (359)
Q Consensus 281 ~~l 283 (359)
...
T Consensus 237 ~~~ 239 (274)
T 2qe6_A 237 VEP 239 (274)
T ss_dssp CTT
T ss_pred ccC
Confidence 653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-08 Score=95.97 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=97.8
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~p 136 (359)
.+|+|+|||+|..+..++ ++ .|..+++..|+ .......-+.+... .--+.-+.++|.+ .+|
T Consensus 169 ~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 231 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAIL--------QA-------EPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP 231 (334)
T ss_dssp CEEEEETCTTCHHHHHHH--------HH-------CTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC
T ss_pred CEEEEeCCCchHHHHHHH--------HH-------CCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC
Confidence 899999999999888774 33 24578999999 55655444433210 0012334468877 466
Q ss_pred CCceeEEEecCccc-ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMH-WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alH-WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+++++.++| | + . .+...+|+.-++-|+|||++++.-.
T Consensus 232 -~~~D~v~~~~vl~~~-~---~---------------------------------~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDL-D---E---------------------------------AASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp -SSCSEEEEESCGGGC-C---H---------------------------------HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred -CCCCEEEEchhccCC-C---H---------------------------------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6899999999998 5 2 1 1334578888899999999999876
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..++... . .+..+.+. .-+...| -..++.+|++++++++| |++.++...
T Consensus 274 ~~~~~~~---~----~~~~~~~~-~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~ 322 (334)
T 2ip2_A 274 TISASEP---S----PMSVLWDV-HLFMACA-------------GRHRTTEEVVDLLGRGG-FAVERIVDL 322 (334)
T ss_dssp CBCSSSC---C----HHHHHHHH-HHHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred ccCCCCC---c----chhHHhhh-HhHhhCC-------------CcCCCHHHHHHHHHHCC-CceeEEEEC
Confidence 5443211 0 11111111 1111111 13468999999999999 998877654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-10 Score=109.82 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=97.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh-CCC-CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT-LPP-RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~-l~~-~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..+. ++ ..+++..|+..+.....-+. ++. ...|..+ +.....
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~--------~~---------g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~l~ 166 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQ--------EA---------GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKA---TADDVR 166 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHH--------HT---------TCEEEEECCCHHHHHHHHTTTCCEECSCCSHH---HHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHH--------Hc---------CCcEEEECCCHHHHHHHHHcCCCcceeeechh---hHhhcc
Confidence 45799999999999888774 22 24899999987665443332 111 1122221 121223
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+|+|+.++||+. |...||+.-++-|+|||+|++..
T Consensus 167 ~~~~~fD~I~~~~vl~h~~--------------------------------------d~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIP--------------------------------------YVQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp HHHCCEEEEEEESCGGGCT--------------------------------------THHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCEEEEEECChHHhcC--------------------------------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 6789999999999999964 33458888899999999999987
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKART-FNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
....+ + ... ..++. +.-.+++++.++++.++++.| |++..++.+.
T Consensus 209 ~~~~~-----------~-----------~~~-----~~~~~~~~~~~~~~s~~~l~~ll~~aG-f~~~~~~~~~ 254 (416)
T 4e2x_A 209 PYLGD-----------I-----------VAK-----TSFDQIFDEHFFLFSATSVQGMAQRCG-FELVDVQRLP 254 (416)
T ss_dssp ECHHH-----------H-----------HHH-----TCGGGCSTTCCEECCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred CChHH-----------h-----------hhh-----cchhhhhhhhhhcCCHHHHHHHHHHcC-CEEEEEEEcc
Confidence 53211 0 000 11122 223456789999999999999 9999888863
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-08 Score=97.33 Aligned_cols=155 Identities=16% Similarity=0.092 Sum_probs=97.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
.+..+|+|+|||+|..+..++ ++ .|..+++..|+|. ........ --+.-+.|+|++ .+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~~~-~~v~~~~~d~~~-~~ 259 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIV--------AK-------YPSINAINFDLPH-----VIQDAPAF-SGVEHLGGDMFD-GV 259 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHTTCCCC-TTEEEEECCTTT-CC
T ss_pred cCCCEEEEeCCCcCHHHHHHH--------Hh-------CCCCEEEEEehHH-----HHHhhhhc-CCCEEEecCCCC-CC
Confidence 346899999999999998884 44 3567899999953 22211111 112334578886 67
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++ |+++++.+||+++. .+...+|+.-++-|+|||++++.-.
T Consensus 260 p~~--D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 260 PKG--DAIFIKWICHDWSD------------------------------------EHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp CCC--SEEEEESCGGGBCH------------------------------------HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCC--CEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 865 99999999996431 1445688888999999999998765
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
-.++..... ........ .-+.-|+. ...-..+|.+|++++++++| |++.++....
T Consensus 302 ~~~~~~~~~---~~~~~~~~-~d~~~~~~------------~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~~ 356 (368)
T 3reo_A 302 ILPPSPDPS---IATKVVIH-TDALMLAY------------NPGGKERTEKEFQALAMASG-FRGFKVASCA 356 (368)
T ss_dssp CCCSSCCCC---HHHHHHHH-HHHHHHHH------------SSBCCCCCHHHHHHHHHHTT-CCEEEEEEEE
T ss_pred ccCCCCCCc---hhhhHHHh-hhHHHHhh------------cCCCccCCHHHHHHHHHHCC-CeeeEEEEeC
Confidence 444321100 00000011 11111211 00114578999999999999 9988776653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-09 Score=96.25 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=99.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +. ...+++..|+........-+...... +..+.+++.+..+|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~--------~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~d~~~~~~~ 104 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAH--------EH--------GASYVLGLDLSEKMLARARAAGPDTG--ITYERADLDKLHLP 104 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHTSCSSS--EEEEECCGGGCCCC
T ss_pred CCCEEEEEcCcCCHHHHHHH--------HC--------CCCeEEEEcCCHHHHHHHHHhcccCC--ceEEEcChhhccCC
Confidence 45799999999999888774 22 11288999987655554444433221 11223466665678
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++||+.. ...+|+.-++-|+|||++++....
T Consensus 105 ~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYVED--------------------------------------VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp TTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCceEEEEeccccccch--------------------------------------HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999999999999999642 234677788999999999998753
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhh----hccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEK----ARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~----~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
................. ...| ...+...... +-.-....|.++.+|+.++++++| |++..++..
T Consensus 147 ~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~~~ 214 (243)
T 3bkw_A 147 PIYMAPARPGWAIDAEG--RRTW---PIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSG-FAIEHVEEF 214 (243)
T ss_dssp HHHHCCSSCSCEECTTS--CEEE---EECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTT-CEEEEEEEC
T ss_pred cccccCcCcceeecCCC--ceEE---eecccccccceeeeeccCceEEEeccHHHHHHHHHHcC-CEeeeeccC
Confidence 21000000000000000 0000 0000000000 000023457789999999999999 999888765
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-09 Score=94.87 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=74.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +. ..+++..|+........-+..+ +--|+. +++.+..+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~~~~~a~~~~~-~~~~~~---~d~~~~~~- 107 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLA--------DS---------FGTVEGLELSADMLAIARRRNP-DAVLHH---GDMRDFSL- 107 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHT--------TT---------SSEEEEEESCHHHHHHHHHHCT-TSEEEE---CCTTTCCC-
T ss_pred CCCcEEEeCCcCCHHHHHHH--------Hc---------CCeEEEEECCHHHHHHHHhhCC-CCEEEE---CChHHCCc-
Confidence 45799999999999988773 11 2378899987655554444433 111222 35544334
Q ss_pred CCceeEEEecC-cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFN-AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~-alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+|+|+. ++||+.. ..|+..+|+.-++-|+|||++++...
T Consensus 108 ~~~fD~v~~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 108 GRRFSAVTCMFSSIGHLAG-----------------------------------QAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp SCCEEEEEECTTGGGGSCH-----------------------------------HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred cCCcCEEEEcCchhhhcCC-----------------------------------HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 78999999998 9999642 12566788889999999999999865
Q ss_pred cCC
Q 018250 216 TGP 218 (359)
Q Consensus 216 g~~ 218 (359)
..+
T Consensus 153 ~~~ 155 (263)
T 3pfg_A 153 WFP 155 (263)
T ss_dssp CCT
T ss_pred cCh
Confidence 443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.8e-09 Score=98.11 Aligned_cols=157 Identities=16% Similarity=0.102 Sum_probs=99.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l 134 (359)
+..+|+|+|||+|..+..++ +.+ |..+++..|++ ......-+.+... .--+.-+.+++.+..
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 228 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVA--------QHN-------PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD 228 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHH--------HHC-------TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred CCCEEEEECCCcCHHHHHHH--------HHC-------CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence 45799999999999888774 332 45799999998 5544433332110 001222345776655
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++ +|+++++..+|.+++ .+...+|+.-++-|+|||++++.-
T Consensus 229 ~~~~-~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 229 YGND-YDLVLLPNFLHHFDV------------------------------------ATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp CCSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-CcEEEEcchhccCCH------------------------------------HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 6655 999999999997431 144567888889999999998887
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
...++.... ..+..+.+.+ -+... .....++.+|++++++++| |++.++...
T Consensus 272 ~~~~~~~~~------~~~~~~~~~~-~~~~~------------~~~~~~t~~~~~~ll~~aG-f~~~~~~~~ 323 (335)
T 2r3s_A 272 FIPNSDRIT------PPDAAAFSLV-MLATT------------PNGDAYTFAEYESMFSNAG-FSHSQLHSL 323 (335)
T ss_dssp CCCCTTSSC------SHHHHHHHHH-HHHHS------------SSCCCCCHHHHHHHHHHTT-CSEEEEECC
T ss_pred ecCCCCcCC------chHHHHHHHH-HHeeC------------CCCCcCCHHHHHHHHHHCC-CCeeeEEEC
Confidence 665432110 1112121111 11111 0125679999999999999 998777554
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-09 Score=94.97 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=96.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCc
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKST 139 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s 139 (359)
+|+|+|||+|..+..+. +. ..+++..|+........-+.......-+.-+.+++.+..+|+++
T Consensus 32 ~vLdiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLA--------SL---------GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADA 94 (202)
T ss_dssp EEEECCCSCTHHHHHHH--------TT---------TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTT
T ss_pred CEEEECCCCCHhHHHHH--------hC---------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCC
Confidence 99999999999988774 11 24888999876554443333211000112223455555578899
Q ss_pred eeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCC
Q 018250 140 LHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPS 219 (359)
Q Consensus 140 ~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~ 219 (359)
+|+|+++. .|| +. .|...+|+.-.+-|+|||++++......+
T Consensus 95 fD~v~~~~-~~~----~~---------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 95 WEGIVSIF-CHL----PS---------------------------------SLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp CSEEEEEC-CCC----CH---------------------------------HHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred ccEEEEEh-hcC----CH---------------------------------HHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 99999964 344 11 24556888888999999999999987654
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 220 GIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
... ..| ....+.++++.+|++++++ | |++..++....+
T Consensus 137 ~~~---------------------~~~--------~~~~~~~~~~~~~l~~~l~--G-f~v~~~~~~~~~ 174 (202)
T 2kw5_A 137 LQY---------------------NTG--------GPKDLDLLPKLETLQSELP--S-LNWLIANNLERN 174 (202)
T ss_dssp GGG---------------------TSC--------CSSSGGGCCCHHHHHHHCS--S-SCEEEEEEEEEE
T ss_pred ccC---------------------CCC--------CCCcceeecCHHHHHHHhc--C-ceEEEEEEEEee
Confidence 100 001 1224568999999999999 7 999999987654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-09 Score=102.48 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=99.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccC-
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGR- 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~- 133 (359)
+..+|+|+|||+|..+..++ +++ |..+++..|+| ......-+.+.... --+.-+.|+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 242 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCV--------QYN-------KEVEVTIVDLP-QQLEMMRKQTAGLSGSERIHGHGANLLDRD 242 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHH--------HHS-------TTCEEEEEECH-HHHHHHHHHHTTCTTGGGEEEEECCCCSSS
T ss_pred CCCEEEEeCCCcCHHHHHHH--------HhC-------CCCEEEEEeCH-HHHHHHHHHHHhcCcccceEEEEccccccC
Confidence 45799999999999998884 332 56799999994 34333333332211 1233345788765
Q ss_pred -CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 -LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 -l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+| +++|+++++.+||.++. .+...+|+.-++-|+|||++++
T Consensus 243 ~~~p-~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 243 VPFP-TGFDAVWMSQFLDCFSE------------------------------------EEVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp CCCC-CCCSEEEEESCSTTSCH------------------------------------HHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCC-CCcCEEEEechhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 467 89999999999985331 1445688888999999999988
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
.-...++... ....+. +......+... .......+|.+|++++++++| |++.++.
T Consensus 286 ~e~~~~~~~~-----~~~~~~-~~~~~~~~~~~----------~~~~~~~~t~~e~~~ll~~AG-f~~v~~~ 340 (363)
T 3dp7_A 286 METLWDRQRY-----ETASYC-LTQISLYFTAM----------ANGNSKMFHSDDLIRCIENAG-LEVEEIQ 340 (363)
T ss_dssp EECCTTSCSS-----HHHHHH-HHHHHHHHHHS----------SCSSCCSCCHHHHHHHHHTTT-EEESCCC
T ss_pred EeeccCCccc-----cchhhH-HHHhhhhHHhh----------hCCCCcccCHHHHHHHHHHcC-CeEEEEE
Confidence 7654433211 001111 11111111100 011224579999999999999 9987664
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.9e-09 Score=102.17 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=95.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC-----------C-CCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL-----------P-PRKYYAA 124 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l-----------~-~~~~~~~ 124 (359)
...+|||+|||+|..++.++ +.+ .|..+|+..|+........-+.+ . .+--|..
T Consensus 83 ~~~~VLDlGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~ 148 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLAS--------KLV------GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHH------TTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEE
T ss_pred CCCEEEEecCccCHHHHHHH--------HHh------CCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEE
Confidence 35799999999999998874 332 13468999999775554443321 1 1111232
Q ss_pred ccCcccccC------CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 018250 125 GVPGSFHGR------LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILN 198 (359)
Q Consensus 125 ~vpgsfy~~------l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~ 198 (359)
+++.+. .+|++++|+|+|+.++||+.+ +..+|+
T Consensus 149 ---~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~ 187 (383)
T 4fsd_A 149 ---GFIENLATAEPEGVPDSSVDIVISNCVCNLSTN--------------------------------------KLALFK 187 (383)
T ss_dssp ---SCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHH
T ss_pred ---ccHHHhhhcccCCCCCCCEEEEEEccchhcCCC--------------------------------------HHHHHH
Confidence 344443 689999999999999999643 234777
Q ss_pred HHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCce
Q 018250 199 ARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHF 278 (359)
Q Consensus 199 ~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F 278 (359)
.-++-|+|||+|+++.+....... +.+.. ...+.... .....+.+++.++++++| |
T Consensus 188 ~~~r~LkpgG~l~i~~~~~~~~~~----------~~~~~-~~~~~~~~------------~~~~~~~~~~~~ll~~aG-F 243 (383)
T 4fsd_A 188 EIHRVLRDGGELYFSDVYADRRLS----------EAAQQ-DPILYGEC------------LGGALYLEDFRRLVAEAG-F 243 (383)
T ss_dssp HHHHHEEEEEEEEEEEEEESSCCC----------HHHHH-CHHHHHTT------------CTTCCBHHHHHHHHHHTT-C
T ss_pred HHHHHcCCCCEEEEEEeccccccC----------HhHhh-hHHHhhcc------------cccCCCHHHHHHHHHHCC-C
Confidence 888999999999998776553211 00000 00111111 013456789999999998 8
Q ss_pred eEeEEEE
Q 018250 279 AMERMQQ 285 (359)
Q Consensus 279 ~i~~le~ 285 (359)
++.++..
T Consensus 244 ~~v~~~~ 250 (383)
T 4fsd_A 244 RDVRLVS 250 (383)
T ss_dssp CCEEEEE
T ss_pred ceEEEEe
Confidence 7554443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.94 E-value=8.7e-09 Score=92.07 Aligned_cols=154 Identities=13% Similarity=0.055 Sum_probs=95.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc------cccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY------YAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~------~~~~vpgsfy 131 (359)
..+|+|+|||+|..+..+. +. .|..+++..|+........-+.+..... -+.-+-+++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLL--------KD-------KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp CCEEEEETCTTCHHHHHHH--------TS-------TTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred CCEEEEecCCCCHHHHHHH--------hc-------CCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 5699999999999988774 22 2446899999987665555444331000 1111223554
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
...++++++|+|+|+.++||+.. .++..+|+.-++-|+|||+++
T Consensus 95 ~~~~~~~~fD~V~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~~i 138 (219)
T 3jwg_A 95 YRDKRFSGYDAATVIEVIEHLDE------------------------------------NRLQAFEKVLFEFTRPQTVIV 138 (219)
T ss_dssp SCCGGGTTCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSEEEE
T ss_pred ccccccCCCCEEEEHHHHHhCCH------------------------------------HHHHHHHHHHHHhhCCCEEEE
Confidence 55567899999999999999632 145568888899999999665
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHH----HHHHhCCceeEeEEEEee
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELE----SLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~----~~i~~~G~F~i~~le~~~ 287 (359)
.+....-+... . .+. .+.. ......++.+.+|++ .++++.| |+++....-.
T Consensus 139 ~~~~~~~~~~~----------~-------~~~-~~~~------~~~~~~~~~~~~~l~~~~~~l~~~~G-f~v~~~~~g~ 193 (219)
T 3jwg_A 139 STPNKEYNFHY----------G-------NLF-EGNL------RHRDHRFEWTRKEFQTWAVKVAEKYG-YSVRFLQIGE 193 (219)
T ss_dssp EEEBGGGGGCC----------C-------CT------------GGGCCTTSBCHHHHHHHHHHHHHHHT-EEEEEEEESC
T ss_pred Eccchhhhhhh----------c-------ccC-cccc------cccCceeeecHHHHHHHHHHHHHHCC-cEEEEEecCC
Confidence 55432221100 0 000 0000 011123556899999 7778889 9987765543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=102.94 Aligned_cols=170 Identities=14% Similarity=0.175 Sum_probs=101.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc----ccccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK----YYAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~----~~~~~vpgsfy~~l 134 (359)
.+|+|+|||+|..+..+++ . ..+|+..|+........-+...... .-+.-+.+++.+..
T Consensus 84 ~~vLDlGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLD--------L---------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp SCEEEETCTTTTTHHHHHT--------T---------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred CcEEEEeccCCHHHHHHHH--------c---------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3999999999999998841 1 2478899987766554444332211 01122234665533
Q ss_pred CCCCceeEEE-ecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 FPKSTLHVVN-SFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~p~~s~d~~~-S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+ ++++|+|+ ++.++||++. .|...+|+.-++-|+|||+|++.
T Consensus 147 ~-~~~fD~v~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 147 L-DKRFGTVVISSGSINELDE------------------------------------ADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp C-SCCEEEEEECHHHHTTSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-CCCcCEEEECCcccccCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 4 78999888 5678898541 25567888889999999999999
Q ss_pred eccCCCCC--CCCCcchhHHHHH-HHHHHHHHHHcCCC---------------ChhhhccCCccccCCCHHHHHHHHHhC
Q 018250 214 LITGPSGI--PFADTVQGATYNF-LGSCLWDLAKMGVI---------------SEEKARTFNVPAYFPYVEELESLIQRN 275 (359)
Q Consensus 214 ~~g~~~~~--~~~~~~~~~~~~~-l~~al~~lv~eGli---------------~~e~~d~f~~P~y~ps~~E~~~~i~~~ 275 (359)
+....... +.... ..+.. -...+ ....... ....+..+....++.+.+|++.+++++
T Consensus 190 ~~~~~~~~~~~~~~~---~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~a 264 (299)
T 3g2m_A 190 LAMSEAAESEPLERK---QELPGRSGRRY--VLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRS 264 (299)
T ss_dssp EECCHHHHSCCCCC------------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHT
T ss_pred eecCccccccchhcc---ceeecCCCcEE--EEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHC
Confidence 98665310 00000 00000 00000 0000000 000011233455678999999999999
Q ss_pred CceeEeEEEEeec
Q 018250 276 GHFAMERMQQLDQ 288 (359)
Q Consensus 276 G~F~i~~le~~~~ 288 (359)
| |++..++.+..
T Consensus 265 G-F~v~~~~~~~~ 276 (299)
T 3g2m_A 265 G-FDVIAQTPFAS 276 (299)
T ss_dssp T-CEEEEEEEECT
T ss_pred C-CEEEEEEecCC
Confidence 9 99999998853
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.93 E-value=9.7e-09 Score=91.75 Aligned_cols=151 Identities=13% Similarity=0.044 Sum_probs=93.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc------cccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY------YAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~------~~~~vpgsfy 131 (359)
..+|+|+|||+|..+..+. +. .+..+++..|+........-+.+..... -+.-+.+++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILL--------KD-------SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp CCEEEEETCTTCHHHHHHH--------HC-------TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred CCEEEEeCCCCCHHHHHHH--------hh-------CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 4699999999999998874 22 2346899999987666655554432100 1111223554
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
...++++++|+|+|+.++||+.. .++..+|+.-++-|+|||+++
T Consensus 95 ~~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~li 138 (217)
T 3jwh_A 95 YQDKRFHGYDAATVIEVIEHLDL------------------------------------SRLGAFERVLFEFAQPKIVIV 138 (217)
T ss_dssp SCCGGGCSCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSEEEE
T ss_pred cccccCCCcCEEeeHHHHHcCCH------------------------------------HHHHHHHHHHHHHcCCCEEEE
Confidence 44466789999999999999732 145568888899999999766
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHH----HHHHhCCceeEeEEE
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELE----SLIQRNGHFAMERMQ 284 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~----~~i~~~G~F~i~~le 284 (359)
++....- . ..|..+.. +. .......++.+.+|++ .++++.| |+++...
T Consensus 139 ~~~~~~~--------------~---~~~~~~~~-~~------~~~~~~~~~~~~~~l~~~~~~~~~~~G-f~v~~~~ 190 (217)
T 3jwh_A 139 TTPNIEY--------------N---VKFANLPA-GK------LRHKDHRFEWTRSQFQNWANKITERFA-YNVQFQP 190 (217)
T ss_dssp EEEBHHH--------------H---HHTC------------------CCSCBCHHHHHHHHHHHHHHSS-EEEEECC
T ss_pred EccCccc--------------c---hhhccccc-cc------ccccccccccCHHHHHHHHHHHHHHcC-ceEEEEe
Confidence 6543110 0 01111100 00 0011223557999999 7888899 9885543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-08 Score=95.54 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=98.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
.+..+|+|+|||+|..+..++ ++ .|..+++..|+|. ....-... --+.-+.|+|++ .+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~~~-~~v~~~~~D~~~-~~ 257 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIA--------AH-------YPTIKGVNFDLPH-----VISEAPQF-PGVTHVGGDMFK-EV 257 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHTTCCCC-TTEEEEECCTTT-CC
T ss_pred cCCCEEEEeCCCCCHHHHHHH--------HH-------CCCCeEEEecCHH-----HHHhhhhc-CCeEEEeCCcCC-CC
Confidence 346899999999999998884 44 3567899999953 22211111 113334578887 77
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++ |+++++++||..+. .|...+|+.-++-|+|||++++.-.
T Consensus 258 p~~--D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 258 PSG--DTILMKWILHDWSD------------------------------------QHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp CCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCC--CEEEehHHhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 865 99999999985321 2455688888999999999998765
Q ss_pred cCCCCCCCCCcchhHHHH-HHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYN-FLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~-~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..++.... ..... ....-+.-|+. ...-..+|.+|++++++++| |++.++...
T Consensus 300 ~~~~~~~~-----~~~~~~~~~~d~~m~~~------------~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~ 353 (364)
T 3p9c_A 300 ILPVNPEA-----NPSSQGVFHVDMIMLAH------------NPGGRERYEREFQALARGAG-FTGVKSTYI 353 (364)
T ss_dssp CBCSSCCS-----SHHHHHHHHHHHHHHHH------------CSSCCCCBHHHHHHHHHHTT-CCEEEEEEE
T ss_pred ccCCCCCc-----chhhhhHHHhHHHHHhc------------ccCCccCCHHHHHHHHHHCC-CceEEEEEc
Confidence 44432111 00111 01111111211 00114578999999999999 999887765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=88.90 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=88.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCc-eEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDF-QVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~-~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..+..+ .. +++..|+........-+..+. --++ .+++.+..+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l--------------------~~~~v~~vD~s~~~~~~a~~~~~~-~~~~---~~d~~~~~~ 91 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL--------------------PYPQKVGVEPSEAMLAVGRRRAPE-ATWV---RAWGEALPF 91 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC--------------------CCSEEEEECCCHHHHHHHHHHCTT-SEEE---CCCTTSCCS
T ss_pred CCCeEEEECCCCCHhHHhC--------------------CCCeEEEEeCCHHHHHHHHHhCCC-cEEE---EcccccCCC
Confidence 4579999999999877644 13 788889877555544443321 1122 235555557
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+|+++.++||+.+ ...+|+.-++-|+|||+++++.+
T Consensus 92 ~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 92 PGESFDVVLLFTTLEFVED--------------------------------------VERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp CSSCEEEEEEESCTTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcEEEEEEcChhhhcCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEec
Confidence 8999999999999999642 22467777899999999999998
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCC
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNG 276 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G 276 (359)
.+.+ .+..+ +..+...|. .......+.|.+|++++++ |
T Consensus 134 ~~~~-----------~~~~~---~~~~~~~~~-------~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 134 EALS-----------PWAAL---YRRLGEKGV-------LPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp CTTS-----------HHHHH---HHHHHHTTC-------TTGGGCCCCCHHHHHHHHC--S
T ss_pred CCcC-----------cHHHH---HHHHhhccC-------ccccccccCCHHHHHHHhc--C
Confidence 6553 12211 111112221 1112245689999999998 7
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-08 Score=95.65 Aligned_cols=155 Identities=16% Similarity=0.081 Sum_probs=98.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l 134 (359)
+...+|+|+|||+|..++.++ ++ .|..+++.-|+|. .-...-+.++. ..--+.-++|+|++..
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~--------~~-------~p~~~~~~~dlp~-v~~~a~~~~~~~~~~rv~~~~gD~~~~~ 241 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECM--------SL-------YPGCKITVFDIPE-VVWTAKQHFSFQEEEQIDFQEGDFFKDP 241 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHH--------HH-------CSSCEEEEEECHH-HHHHHHHHSCC--CCSEEEEESCTTTSC
T ss_pred ccCCeEEeeCCCCCHHHHHHH--------Hh-------CCCceeEeccCHH-HHHHHHHhhhhcccCceeeecCccccCC
Confidence 345689999999999888874 44 4678999999985 22222222222 1112444578999876
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+| ..|+++....||-.+ + .+-..+|+.-++.|+|||++++.=
T Consensus 242 ~~--~~D~~~~~~vlh~~~---d---------------------------------~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 242 LP--EADLYILARVLHDWA---D---------------------------------GKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp CC--CCSEEEEESSGGGSC---H---------------------------------HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CC--CceEEEeeeecccCC---H---------------------------------HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 66 469999999999422 1 133457888899999999998876
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.-.++... ......+-+ +.-|+.-| --.+|.+|++++++++| |++.++..
T Consensus 284 ~~~~~~~~------~~~~~~~~d-l~ml~~~~-------------g~ert~~e~~~ll~~AG-f~~v~v~~ 333 (353)
T 4a6d_A 284 SLLDEDRR------GPLLTQLYS-LNMLVQTE-------------GQERTPTHYHMLLSSAG-FRDFQFKK 333 (353)
T ss_dssp CCCCTTSC------CCHHHHHHH-HHHHHSSS-------------CCCCCHHHHHHHHHHHT-CEEEEEEC
T ss_pred eeeCCCCC------CCHHHHHHH-HHHHHhCC-------------CcCCCHHHHHHHHHHCC-CceEEEEE
Confidence 54332111 011111111 11122111 13479999999999999 99877654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=86.97 Aligned_cols=132 Identities=10% Similarity=0.032 Sum_probs=92.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +.. .+++..|+........-+..+ +--+.. ++ ..+|
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~--------~~~---------~~v~~vD~s~~~~~~a~~~~~-~v~~~~---~d---~~~~ 72 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLL--------EFA---------TKLYCIDINVIALKEVKEKFD-SVITLS---DP---KEIP 72 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHH--------TTE---------EEEEEECSCHHHHHHHHHHCT-TSEEES---SG---GGSC
T ss_pred CCCeEEEECCCCCHHHHHHH--------hhc---------CeEEEEeCCHHHHHHHHHhCC-CcEEEe---CC---CCCC
Confidence 45799999999999998884 221 278889987655544444322 111222 23 4478
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+++++.++||+.+ ...+|+.-.+-|+|||++++....
T Consensus 73 ~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~~~ 114 (170)
T 3i9f_A 73 DNSVDFILFANSFHDMDD--------------------------------------KQHVISEVKRILKDDGRVIIIDWR 114 (170)
T ss_dssp TTCEEEEEEESCSTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCceEEEEEccchhcccC--------------------------------------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 899999999999999642 234677788999999999999876
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+.... .......+.+|++++++ | |++.+....
T Consensus 115 ~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~--G-f~~~~~~~~ 148 (170)
T 3i9f_A 115 KENTGIG---------------------------------PPLSIRMDEKDYMGWFS--N-FVVEKRFNP 148 (170)
T ss_dssp SSCCSSS---------------------------------SCGGGCCCHHHHHHHTT--T-EEEEEEECS
T ss_pred ccccccC---------------------------------chHhhhcCHHHHHHHHh--C-cEEEEccCC
Confidence 5542110 00124468999999998 8 999877765
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=103.88 Aligned_cols=175 Identities=10% Similarity=0.165 Sum_probs=99.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C---cc----c-ccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R---KY----Y-AAG 125 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~---~~----~-~~~ 125 (359)
...+|||+|||+|..+..++ .. ...+|+..|+...+-...-+..+. . .+ | +.-
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~--------~~--------~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d 111 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYF--------YG--------EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQET 111 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECC
T ss_pred CCCeEEEEecCCcHhHHHHH--------hc--------CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhh
Confidence 35799999999998776543 11 124788888887665544332211 0 11 2 221
Q ss_pred cCcccc-c---CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 126 VPGSFH-G---RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARA 201 (359)
Q Consensus 126 vpgsfy-~---~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra 201 (359)
+-++-+ . ..+|++++|+|+|..++||+-..+ |...+|+.-+
T Consensus 112 ~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~-----------------------------------~~~~~l~~~~ 156 (302)
T 2vdw_A 112 IRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR-----------------------------------HYATVMNNLS 156 (302)
T ss_dssp TTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT-----------------------------------THHHHHHHHH
T ss_pred cccchhhhhhhccccCCCeeEEEECchHHHhCCHH-----------------------------------HHHHHHHHHH
Confidence 222222 2 236889999999999999964321 2235888899
Q ss_pred HhhccCceeEEEeccCCCCCCC-CCcchhHHHHHH-HHHHHHHHHcCCCChh-------hhccCCccccCCCHHHHHHHH
Q 018250 202 EELVPGGLMVFSLITGPSGIPF-ADTVQGATYNFL-GSCLWDLAKMGVISEE-------KARTFNVPAYFPYVEELESLI 272 (359)
Q Consensus 202 ~EL~pGG~lvl~~~g~~~~~~~-~~~~~~~~~~~l-~~al~~lv~eGli~~e-------~~d~f~~P~y~ps~~E~~~~i 272 (359)
+-|||||+|+++++.+...... ........-... ...|.. -.-++.+ +......|.|+-+.+|+..++
T Consensus 157 r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~ 233 (302)
T 2vdw_A 157 ELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMS---VEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVF 233 (302)
T ss_dssp HHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEE---ECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHHH
T ss_pred HHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceee---eccccccccceeeccccCCCceeeeeEHHHHHHHH
Confidence 9999999999998754321000 000000000000 000000 0000000 001234567888999999999
Q ss_pred HhCCceeEeEEEEe
Q 018250 273 QRNGHFAMERMQQL 286 (359)
Q Consensus 273 ~~~G~F~i~~le~~ 286 (359)
++.| |++.....+
T Consensus 234 ~~~G-l~lv~~~~f 246 (302)
T 2vdw_A 234 NEYG-FVLVDNVDF 246 (302)
T ss_dssp HHTT-EEEEEEEEH
T ss_pred HHCC-CEEEEecCh
Confidence 9999 999888766
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.9e-09 Score=94.55 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=99.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-c-------------
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-Y------------- 121 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-~------------- 121 (359)
....+|+|+|||+|..++.++ +. .+ .+|+..|+...+...+-+.+.... .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~--------~~-------~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 118 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSA--------CE-------SF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDL 118 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTG--------GG-------TE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHh--------hc-------cc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcc
Confidence 346899999999999998774 11 11 378888887765554433332210 0
Q ss_pred ----------------cc-cccCcccccCC-CCC---CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHH
Q 018250 122 ----------------YA-AGVPGSFHGRL-FPK---STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKG 180 (359)
Q Consensus 122 ----------------~~-~~vpgsfy~~l-~p~---~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~ 180 (359)
-+ ..+.+++.+.. +++ +++|+|+|+.+||++..-
T Consensus 119 ~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~------------------------- 173 (265)
T 2i62_A 119 EGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPD------------------------- 173 (265)
T ss_dssp TTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS-------------------------
T ss_pred cccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCC-------------------------
Confidence 01 22234554433 356 899999999999975421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc
Q 018250 181 VHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA 260 (359)
Q Consensus 181 ~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~ 260 (359)
..|...+|+.-++-|+|||+|++......+. . ..| ....+.
T Consensus 174 ---------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--~--------------------~~~--------~~~~~~ 214 (265)
T 2i62_A 174 ---------LPAYRTALRNLGSLLKPGGFLVMVDALKSSY--Y--------------------MIG--------EQKFSS 214 (265)
T ss_dssp ---------HHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--E--------------------EET--------TEEEEC
T ss_pred ---------hHHHHHHHHHHHhhCCCCcEEEEEecCCCce--E--------------------EcC--------Cccccc
Confidence 1255668888899999999999988533220 0 001 112234
Q ss_pred cCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 261 YFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 261 y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
+..+.+++.++++++| |++..++...
T Consensus 215 ~~~~~~~~~~~l~~aG-f~~~~~~~~~ 240 (265)
T 2i62_A 215 LPLGWETVRDAVEEAG-YTIEQFEVIS 240 (265)
T ss_dssp CCCCHHHHHHHHHHTT-CEEEEEEEEC
T ss_pred cccCHHHHHHHHHHCC-CEEEEEEEec
Confidence 5678999999999999 9999988874
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=97.90 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=96.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~ 133 (359)
....+|+|+|||+|..+..++ +. .|..+++..|+ .......-+.+... .--+.-+.+++.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~--------~~-------~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 243 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIA--------LR-------APHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK- 243 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-
T ss_pred CCCCEEEEECCCcCHHHHHHH--------HH-------CCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-
Confidence 346799999999998888774 33 24678999999 54444333322110 0012223457765
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|.+ +|+++++.++|++++ .+...+|+.-++-|+|||++++.
T Consensus 244 ~~~~~-~D~v~~~~vl~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~ 286 (374)
T 1qzz_A 244 PLPVT-ADVVLLSFVLLNWSD------------------------------------EDALTILRGCVRALEPGGRLLVL 286 (374)
T ss_dssp CCSCC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCC-CCEEEEeccccCCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 45654 999999999987431 12345788888999999999987
Q ss_pred ec--cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 214 LI--TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 214 ~~--g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
-. ..++.. ...+..+.+.+. ++..| ...++.+|++++++++| |++.++....
T Consensus 287 e~~~~~~~~~-------~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~ll~~aG-f~~~~~~~~~ 340 (374)
T 1qzz_A 287 DRADVEGDGA-------DRFFSTLLDLRM-LTFMG-------------GRVRTRDEVVDLAGSAG-LALASERTSG 340 (374)
T ss_dssp ECCH--------------HHHHHHHHHHH-HHHHS-------------CCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred echhhcCCCC-------CcchhhhcchHH-HHhCC-------------CcCCCHHHHHHHHHHCC-CceEEEEECC
Confidence 76 332211 011121111111 11111 14589999999999999 9998887764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=91.08 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=71.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +.. + +++..|+........-+..+. --+. .+++.+..+
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~--------~~~-------~--~v~~~D~s~~~~~~a~~~~~~-~~~~---~~d~~~~~~- 97 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFT--------KEF-------G--DTAGLELSEDMLTHARKRLPD-ATLH---QGDMRDFRL- 97 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHH--------HHH-------S--EEEEEESCHHHHHHHHHHCTT-CEEE---ECCTTTCCC-
T ss_pred CCCeEEEecccCCHHHHHHH--------HhC-------C--cEEEEeCCHHHHHHHHHhCCC-CEEE---ECCHHHccc-
Confidence 35799999999999998774 222 1 688888876555544443331 1122 235544334
Q ss_pred CCceeEEEec-CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSF-NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~-~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+|+|+ .++||+... .|+..+|+.-++-|+|||++++...
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTT-----------------------------------EELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcCchHhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999954 499996421 2566788888999999999999876
Q ss_pred cCC
Q 018250 216 TGP 218 (359)
Q Consensus 216 g~~ 218 (359)
..+
T Consensus 143 ~~~ 145 (239)
T 3bxo_A 143 WFP 145 (239)
T ss_dssp CCT
T ss_pred cCc
Confidence 544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=87.81 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=90.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+.. . ..+++..|.........-+..+. +..+.+++.+..+|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~~D~~~~~~~~a~~~~~~----~~~~~~d~~~~~~~ 104 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSK--------Q---------GHDVLGTDLDPILIDYAKQDFPE----ARWVVGDLSVDQIS 104 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHCTT----SEEEECCTTTSCCC
T ss_pred CCCeEEEECCCCCHHHHHHHH--------C---------CCcEEEEcCCHHHHHHHHHhCCC----CcEEEcccccCCCC
Confidence 357999999999999887741 1 24788888876555444444332 11122355554578
Q ss_pred CCceeEEEec-CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSF-NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~-~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+++++ ..+|+++. .+...+|+.-++-|+|||++++...
T Consensus 105 ~~~~D~i~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 105 ETDFDLIVSAGNVMGFLAE------------------------------------DGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp CCCEEEEEECCCCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceeEEEECCcHHhhcCh------------------------------------HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 8999999998 67887531 1445688888899999999999874
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
... ..+.+++...+++.| |++..+...
T Consensus 149 ~~~-------------------------------------------~~~~~~~~~~l~~~G-f~~~~~~~~ 175 (195)
T 3cgg_A 149 AGR-------------------------------------------GWVFGDFLEVAERVG-LELENAFES 175 (195)
T ss_dssp TTS-------------------------------------------SCCHHHHHHHHHHHT-EEEEEEESS
T ss_pred CCC-------------------------------------------CcCHHHHHHHHHHcC-CEEeeeecc
Confidence 321 146888999999999 998776543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=96.31 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=95.0
Q ss_pred cceEEEeecCCC--CcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccc
Q 018250 57 YTVRIADLGCSV--GPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~--G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsf 130 (359)
+..+|+|||||+ |.|+..+++ .. .|+.+|+..|....+....-..+.. +--|+.+ ++
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~-------~~-------~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~a---D~ 140 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQ-------SV-------APESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEA---DM 140 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHH-------HH-------CTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEEC---CT
T ss_pred CCCEEEEeCCCCCcccHHHHHHH-------HH-------CCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEe---cc
Confidence 457899999998 778877752 22 3567899999876665443333332 1124443 33
Q ss_pred ccC--CC--C--CCcee-----EEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 018250 131 HGR--LF--P--KSTLH-----VVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNA 199 (359)
Q Consensus 131 y~~--l~--p--~~s~d-----~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~ 199 (359)
.+. ++ | .+++| .++|+.+||||.+-. |....|+.
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~-----------------------------------~p~~~l~~ 185 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDED-----------------------------------DAVGIVRR 185 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGG-----------------------------------CHHHHHHH
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchh-----------------------------------hHHHHHHH
Confidence 221 01 1 34455 588999999975421 12345666
Q ss_pred HHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCcee
Q 018250 200 RAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 200 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
-.+-|+|||+|+++.++.+.. + ...+.+.+.++. -..|+.++|.+|+...+. | |+
T Consensus 186 l~~~L~PGG~Lvls~~~~d~~-p-------~~~~~~~~~~~~--------------~g~p~~~rs~~ei~~~f~--G-le 240 (277)
T 3giw_A 186 LLEPLPSGSYLAMSIGTAEFA-P-------QEVGRVAREYAA--------------RNMPMRLRTHAEAEEFFE--G-LE 240 (277)
T ss_dssp HHTTSCTTCEEEEEEECCTTS-H-------HHHHHHHHHHHH--------------TTCCCCCCCHHHHHHTTT--T-SE
T ss_pred HHHhCCCCcEEEEEeccCCCC-H-------HHHHHHHHHHHh--------------cCCCCccCCHHHHHHHhC--C-Cc
Confidence 788999999999999876531 0 012333333322 223789999999999994 7 98
Q ss_pred EeEEEEe
Q 018250 280 MERMQQL 286 (359)
Q Consensus 280 i~~le~~ 286 (359)
+..-...
T Consensus 241 lvePG~v 247 (277)
T 3giw_A 241 LVEPGIV 247 (277)
T ss_dssp ECTTCSE
T ss_pred ccCCcEe
Confidence 7544333
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.5e-09 Score=91.88 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=81.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. .+++..|+.... --+. .+++.+..+|
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~--------------------~~v~~~D~s~~~-----------~~~~---~~d~~~~~~~ 112 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR--------------------NPVHCFDLASLD-----------PRVT---VCDMAQVPLE 112 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC--------------------SCEEEEESSCSS-----------TTEE---ESCTTSCSCC
T ss_pred CCCeEEEECCcCCHHHHHhh--------------------ccEEEEeCCCCC-----------ceEE---EeccccCCCC
Confidence 35789999999999876551 367777876641 0122 2355555578
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++|| . |...+|+.-++-|+|||+++++...
T Consensus 113 ~~~fD~v~~~~~l~~-~--------------------------------------~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 113 DESVDVAVFCLSLMG-T--------------------------------------NIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp TTCEEEEEEESCCCS-S--------------------------------------CHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred CCCEeEEEEehhccc-c--------------------------------------CHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 899999999999996 1 2234677778899999999997532
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
. .+++.+++.+++++.| |++.....
T Consensus 154 ~-------------------------------------------~~~~~~~~~~~l~~~G-f~~~~~~~ 178 (215)
T 2zfu_A 154 S-------------------------------------------RFEDVRTFLRAVTKLG-FKIVSKDL 178 (215)
T ss_dssp G-------------------------------------------GCSCHHHHHHHHHHTT-EEEEEEEC
T ss_pred C-------------------------------------------CCCCHHHHHHHHHHCC-CEEEEEec
Confidence 1 1238999999999999 99877554
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-08 Score=94.81 Aligned_cols=155 Identities=17% Similarity=0.136 Sum_probs=97.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +. .|..+++..|+ .......-+.+..... -+.-+.+++.+ .
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~--------~~-------~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 245 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIA--------RR-------APHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-P 245 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred cCcEEEEeCCcCcHHHHHHH--------Hh-------CCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-C
Confidence 45799999999999988774 33 24678999999 5454443332211000 12223457765 4
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|.+ +|+++++..+|.++. .+...+|+.-++-|+|||++++.-
T Consensus 246 ~~~~-~D~v~~~~vl~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~e 288 (360)
T 1tw3_A 246 LPRK-ADAIILSFVLLNWPD------------------------------------HDAVRILTRCAEALEPGGRILIHE 288 (360)
T ss_dssp CSSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCC-ccEEEEcccccCCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5654 999999999986421 133457778889999999999876
Q ss_pred cc-CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 IT-GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g-~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.. .++... . .+..+.+.+ -++..| ...++.+|++++++++| |++.++....
T Consensus 289 ~~~~~~~~~---~----~~~~~~~~~-~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~~ 340 (360)
T 1tw3_A 289 RDDLHENSF---N----EQFTELDLR-MLVFLG-------------GALRTREKWDGLAASAG-LVVEEVRQLP 340 (360)
T ss_dssp CCBCGGGCC---S----HHHHHHHHH-HHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred EeccCCCCC---c----chhhhccHH-HhhhcC-------------CcCCCHHHHHHHHHHCC-CeEEEEEeCC
Confidence 55 332110 0 111111111 111112 14579999999999999 9998887764
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.1e-08 Score=93.10 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=94.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
+..+|+|+|||+|..+..++ +++ |..+++.-|+|. .. ...+.. .. +.-+.|+|++ .+|
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~--------~~~-------~~~~~~~~D~~~-~~-~~a~~~--~~--v~~~~~d~~~-~~~ 266 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELII--------SKY-------PLIKGINFDLPQ-VI-ENAPPL--SG--IEHVGGDMFA-SVP 266 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHH--------HHC-------TTCEEEEEECHH-HH-TTCCCC--TT--EEEEECCTTT-CCC
T ss_pred CCCEEEEeCCCCcHHHHHHH--------HHC-------CCCeEEEeChHH-HH-Hhhhhc--CC--CEEEeCCccc-CCC
Confidence 46799999999999998874 442 467888889842 21 111111 11 3334568877 567
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+ +|+++++.+||++++ .+...+|+.-++-|+|||++++.-..
T Consensus 267 ~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 267 Q--GDAMILKAVCHNWSD------------------------------------EKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp C--EEEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C--CCEEEEecccccCCH------------------------------------HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 5 999999999997542 12346888889999999999988654
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.++.... .....+..+.+.+ -|+..| ...++.+|++++++++| |++.++...
T Consensus 309 ~~~~~~~---~~~~~~~~~~d~~-~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~ 360 (372)
T 1fp1_D 309 LPEEPNT---SEESKLVSTLDNL-MFITVG-------------GRERTEKQYEKLSKLSG-FSKFQVACR 360 (372)
T ss_dssp ECSSCCS---SHHHHHHHHHHHH-HHHHHS-------------CCCEEHHHHHHHHHHTT-CSEEEEEEE
T ss_pred cCCCCcc---chHHHHHHHhhHH-HHhccC-------------CccCCHHHHHHHHHHCC-CceEEEEEc
Confidence 4332110 0000001111111 111111 13469999999999999 998777664
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-09 Score=96.71 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=96.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +. ..+++..|+........-+... . .+.. +++.+..+|
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~~l~~a~~~~~-~-~~~~---~d~~~~~~~ 111 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQ--------ER---------GFEVVLVDPSKEMLEVAREKGV-K-NVVE---AKAEDLPFP 111 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHH--------TT---------TCEEEEEESCHHHHHHHHHHTC-S-CEEE---CCTTSCCSC
T ss_pred CCCeEEEeCCCcCHHHHHHH--------Hc---------CCeEEEEeCCHHHHHHHHhhcC-C-CEEE---CcHHHCCCC
Confidence 35799999999999998774 11 2488999987765554443332 1 1333 355555588
Q ss_pred CCceeEEEecC-cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFN-AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~-alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+|+++. .+||..+ ...+|+.-++-|+|||++++.+.
T Consensus 112 ~~~fD~v~~~~~~~~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 112 SGAFEAVLALGDVLSYVEN--------------------------------------KDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp TTCEEEEEECSSHHHHCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEcchhhhcccc--------------------------------------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999976 5677432 23467778899999999999987
Q ss_pred cCCCCCCCCCcchhHHHHHHH----HHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 216 TGPSGIPFADTVQGATYNFLG----SCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~----~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
+.... ..+.+. ..+..+...|...... ....++.++.+.+|++++ +| |++.++.....
T Consensus 154 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l---aG-f~~~~~~~~~~ 215 (260)
T 2avn_A 154 NFYTF----------LQQMIEKDAWDQITRFLKTQTTSVGT-TLFSFNSYAFKPEDLDSL---EG-FETVDIRGIGV 215 (260)
T ss_dssp BHHHH----------HHHHHHTTCHHHHHHHHHHCEEEEEC-SSEEEEEECBCGGGGSSC---TT-EEEEEEEEECS
T ss_pred ChHHH----------HHHhhcchhHHHHHHHHhccccccCC-CceeEEEeccCHHHHHHh---cC-ceEEEEECCCC
Confidence 54310 000000 1112223334322000 001112247789999888 88 99988887643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=91.26 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=70.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..+..+. +. .+ +++..|+........-+......--+.-+.+++.+..+|+
T Consensus 39 ~~~vLDlG~G~G~~~~~l~--------~~-------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLE--------DY-------GF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED 101 (227)
T ss_dssp CCEEEEETCTTSHHHHHHH--------HT-------TC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT
T ss_pred CCeEEEEeccCCHHHHHHH--------Hc-------CC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCC
Confidence 5799999999999887763 22 12 7888888765444333222100001112234565545788
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+++|+|+|+.++|+... .|...+|+.-++-|+|||++++....
T Consensus 102 ~~~D~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEP------------------------------------LELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TCEEEEEEESCGGGCCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcEEEEEEcCchHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99999999999554210 14556888889999999999998764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-07 Score=86.40 Aligned_cols=156 Identities=14% Similarity=0.010 Sum_probs=93.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-ccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-YYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|.++..++. .. + +|+..|+........-+..+... -|+. +++.+..+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~--------~~-------~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~---~d~~~~~~ 115 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQ--------FF-------P--RVIGLDVSKSALEIAAKENTAANISYRL---LDGLVPEQ 115 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHH--------HS-------S--CEEEEESCHHHHHHHHHHSCCTTEEEEE---CCTTCHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHH--------hC-------C--CEEEEECCHHHHHHHHHhCcccCceEEE---Cccccccc
Confidence 457899999999999998852 21 2 67777877655555444443211 1222 23322111
Q ss_pred C-----CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 136 P-----KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 136 p-----~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+ ..++|+++++.++||+.. .|...+|+.-++-|+|||++
T Consensus 116 ~~~~~~~~~~d~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l 159 (245)
T 3ggd_A 116 AAQIHSEIGDANIYMRTGFHHIPV------------------------------------EKRELLGQSLRILLGKQGAM 159 (245)
T ss_dssp HHHHHHHHCSCEEEEESSSTTSCG------------------------------------GGHHHHHHHHHHHHTTTCEE
T ss_pred ccccccccCccEEEEcchhhcCCH------------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence 1 134899999999999642 14456788888999999998
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChh---hhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEE---KARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e---~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
++.-++..+. ..+..+... ..| .... .+..-..| ...+.+|+.+.+ +| |++..-....
T Consensus 160 ~i~~~~~~~~---------~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--aG-f~~~~~~~~~ 220 (245)
T 3ggd_A 160 YLIELGTGCI---------DFFNSLLEK-----YGQ-LPYELLLVMEHGIRP-GIFTAEDIELYF--PD-FEILSQGEGL 220 (245)
T ss_dssp EEEEECTTHH---------HHHHHHHHH-----HSS-CCHHHHHHHTTTCCC-CCCCHHHHHHHC--TT-EEEEEEECCB
T ss_pred EEEeCCcccc---------HHHHHHHhC-----CCC-CchhhhhccccCCCC-CccCHHHHHHHh--CC-CEEEeccccc
Confidence 8888765431 111111111 011 1110 11112233 346899999999 88 9997766653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-08 Score=92.30 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=76.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---CCcc--cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---PRKY--YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---~~~~--~~~~vpgsfy 131 (359)
...+|+|+|||+|..++.++ +. ..+|+..|+.........+... ...- -+..+.+++.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~ 119 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLV--------EE---------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 119 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred CCCEEEEecCCCCHHHHHHH--------HC---------CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence 35799999999999988774 22 2389999998766655544321 0000 0111123444
Q ss_pred cCC---CCCCceeEEEec-CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 132 GRL---FPKSTLHVVNSF-NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 132 ~~l---~p~~s~d~~~S~-~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
... ++++++|+|+|+ .++|++...... ..++..+|+.-++-|+||
T Consensus 120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~~Lkpg 168 (293)
T 3thr_A 120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGD-------------------------------QSEHRLALKNIASMVRPG 168 (293)
T ss_dssp GHHHHSCCTTCEEEEEECTTCGGGSCCSSSS-------------------------------SHHHHHHHHHHHHTEEEE
T ss_pred hCccccccCCCeEEEEEcChHHhhcCccccC-------------------------------HHHHHHHHHHHHHHcCCC
Confidence 433 789999999999 899997653321 135677888999999999
Q ss_pred ceeEEEecc
Q 018250 208 GLMVFSLIT 216 (359)
Q Consensus 208 G~lvl~~~g 216 (359)
|+|+++...
T Consensus 169 G~l~~~~~~ 177 (293)
T 3thr_A 169 GLLVIDHRN 177 (293)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEeCC
Confidence 999998853
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-08 Score=94.68 Aligned_cols=158 Identities=9% Similarity=0.078 Sum_probs=99.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~ 133 (359)
.+..+|+|+|||+|..+..++ ++ .|..+++..|+ .......-+.+.... --+.-+.++|.+.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAML--------KH-------FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHH--------HH-------CTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred CCCCEEEEECCcccHHHHHHH--------HH-------CCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence 346799999999999998884 33 24678999999 545444333321100 0122334688776
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|+. |+++++.++|.+++ .+...+|+.-++-|+|||++++.
T Consensus 253 ~~~~~--D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 253 SYPEA--DAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp CCCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCC--CEEEEechhccCCH------------------------------------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 66655 99999999985321 13556888889999999999777
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
-...++.. . . .+..+ + .|... ...-.....+++.+|++++++++| |++.++...
T Consensus 295 e~~~~~~~-~--~----~~~~~---~-~~~~~-------~~~g~~~~~~~t~~e~~~ll~~aG-f~~v~~~~~ 348 (359)
T 1x19_A 295 DMVIDDPE-N--P----NFDYL---S-HYILG-------AGMPFSVLGFKEQARYKEILESLG-YKDVTMVRK 348 (359)
T ss_dssp EECCCCTT-S--C----CHHHH---H-HHGGG-------GGSSCCCCCCCCGGGHHHHHHHHT-CEEEEEEEE
T ss_pred ecccCCCC-C--c----hHHHH---H-HHHHh-------cCCCCcccCCCCHHHHHHHHHHCC-CceEEEEec
Confidence 66554321 0 0 11111 1 22110 000111234689999999999999 998877665
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.5e-09 Score=93.89 Aligned_cols=105 Identities=18% Similarity=0.305 Sum_probs=69.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..+..+++ . .+++..|+........-+.......-+.-+.+++.+..+|
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~----------------~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLAD----------------H--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP- 94 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTT----------------T--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-
T ss_pred CCeEEEecCCCCHHHHHHhh----------------C--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-
Confidence 37999999999998887741 1 4788888876555444333211000011122355444455
Q ss_pred CceeEEEecC-cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 138 STLHVVNSFN-AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~-alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+++|+++++. ++||+... .|...+|+.-++-|+|||++++.+..
T Consensus 95 ~~fD~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTE-----------------------------------ADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp SCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcCEEEEeCCchhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 8999999987 99996321 25566888888999999999998754
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=88.24 Aligned_cols=140 Identities=13% Similarity=0.138 Sum_probs=89.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..+..+++ . ..+++..|+........-+....... -+..+.+++.+..+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~- 94 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAA--------N---------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF- 94 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-
T ss_pred CCeEEEEcCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-
Confidence 45999999999999887741 1 24788888876554443332211000 01222345555445
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++||++. .|...+|+.-++-|+|||++++....
T Consensus 95 ~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 95 DRQYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp CCCEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCCceEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 789999999999999641 14456788888999999998776543
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.....+. + ....+..+.+|+++.++. |++.+.+..
T Consensus 139 ~~~~~~~----------------------~----------~~~~~~~~~~~l~~~~~~---f~~~~~~~~ 173 (199)
T 2xvm_A 139 DTADYPC----------------------T----------VGFPFAFKEGELRRYYEG---WERVKYNED 173 (199)
T ss_dssp CCSSSCC----------------------C----------SCCSCCBCTTHHHHHTTT---SEEEEEECC
T ss_pred ccCCcCC----------------------C----------CCCCCccCHHHHHHHhcC---CeEEEeccc
Confidence 3221100 0 011245688999998864 988777643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-08 Score=90.60 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=88.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsf 130 (359)
....+|+|+|||+|..|..++ +. ...+|+..|+..++.....+..+. .. -+....++++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la--------~~--------g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~ 99 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVML--------QN--------GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADF 99 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGC
T ss_pred CCCCEEEEEccCCCHHHHHHH--------hc--------CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHc
Confidence 345699999999999998874 22 113899999999887664443332 00 1111122344
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
...+++..++|+++++. + .+|+.-++-|+|||++
T Consensus 100 ~~~~~d~~~~D~v~~~l--------~--------------------------------------~~l~~i~rvLkpgG~l 133 (232)
T 3opn_A 100 EQGRPSFTSIDVSFISL--------D--------------------------------------LILPPLYEILEKNGEV 133 (232)
T ss_dssp CSCCCSEEEECCSSSCG--------G--------------------------------------GTHHHHHHHSCTTCEE
T ss_pred CcCCCCEEEEEEEhhhH--------H--------------------------------------HHHHHHHHhccCCCEE
Confidence 33345556666665542 1 1456678899999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
++.+ .+ .++ ..+..+-..|.+.... .+..+.+++.+.++++| |++..++..
T Consensus 134 v~~~--~p------------~~e---~~~~~~~~~G~~~d~~-------~~~~~~~~l~~~l~~aG-f~v~~~~~~ 184 (232)
T 3opn_A 134 AALI--KP------------QFE---AGREQVGKNGIIRDPK-------VHQMTIEKVLKTATQLG-FSVKGLTFS 184 (232)
T ss_dssp EEEE--CH------------HHH---SCHHHHC-CCCCCCHH-------HHHHHHHHHHHHHHHHT-EEEEEEEEC
T ss_pred EEEE--Cc------------ccc---cCHHHhCcCCeecCcc-------hhHHHHHHHHHHHHHCC-CEEEEEEEc
Confidence 9965 11 111 1222322345442221 13348999999999999 999888775
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=90.40 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=75.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-Cc-ccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~-~~~~~vpgsfy~~ 133 (359)
....+|+|+|||+|..+..+. +. ..+++..|+........-+.... .. -|.. +++.+.
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~ 109 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLA--------PH---------CKRLTVIDVMPRAIGRACQRTKRWSHISWAA---TDILQF 109 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHG--------GG---------EEEEEEEESCHHHHHHHHHHTTTCSSEEEEE---CCTTTC
T ss_pred CCCCcEEEEcCCCCHHHHHHH--------Hc---------CCEEEEEECCHHHHHHHHHhcccCCCeEEEE---cchhhC
Confidence 446899999999999988774 22 13788888877665555554443 11 1222 355443
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
. |++++|+|+++.++||+... .++..+|+.-++-|+|||+++++
T Consensus 110 ~-~~~~fD~v~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~~ 153 (216)
T 3ofk_A 110 S-TAELFDLIVVAEVLYYLEDM-----------------------------------TQMRTAIDNMVKMLAPGGHLVFG 153 (216)
T ss_dssp C-CSCCEEEEEEESCGGGSSSH-----------------------------------HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred C-CCCCccEEEEccHHHhCCCH-----------------------------------HHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 78999999999999997531 14456788889999999999998
Q ss_pred ecc
Q 018250 214 LIT 216 (359)
Q Consensus 214 ~~g 216 (359)
...
T Consensus 154 ~~~ 156 (216)
T 3ofk_A 154 SAR 156 (216)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-08 Score=93.56 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=37.8
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+|+|..++||+.- .....++..+|+.-++-|+|||+|++..
T Consensus 173 ~~~~~fD~I~~~~vl~~ihl--------------------------------~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 173 AQTPEYDVVLCLSLTKWVHL--------------------------------NWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp TCCCCEEEEEEESCHHHHHH--------------------------------HHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCcCEEEEChHHHHhhh--------------------------------cCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 57899999999999999420 0112367778999999999999999975
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-08 Score=92.76 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=89.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccc-cccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYA-AGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~-~~vpgsfy~~l~ 135 (359)
...+|||+|||||..|..++ +. ..-+|+.-|+..++...-.+.-+.-..+- ..+ ...-..-+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~--------~~--------ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni-~~l~~~~l 147 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVML--------QN--------GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNF-RYAEPVDF 147 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCG-GGCCGGGC
T ss_pred cccEEEecCCCccHHHHHHH--------hC--------CCCEEEEEECCHHHHHHHHHhCcccceecccCc-eecchhhC
Confidence 45799999999999998774 21 12489999999988765333322100000 000 00000124
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|..++|++++..++||+.. +|..-++-|+|||++++..-
T Consensus 148 ~~~~fD~v~~d~sf~sl~~-----------------------------------------vL~e~~rvLkpGG~lv~lvk 186 (291)
T 3hp7_A 148 TEGLPSFASIDVSFISLNL-----------------------------------------ILPALAKILVDGGQVVALVK 186 (291)
T ss_dssp TTCCCSEEEECCSSSCGGG-----------------------------------------THHHHHHHSCTTCEEEEEEC
T ss_pred CCCCCCEEEEEeeHhhHHH-----------------------------------------HHHHHHHHcCcCCEEEEEEC
Confidence 6678999999999998632 34456789999999999741
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..-+ .... .+-..|.+.... .+..+.+++.+.++..| |.+..+...
T Consensus 187 -Pqfe--~~~~--------------~~~~~G~vrd~~-------~~~~~~~~v~~~~~~~G-f~v~~~~~s 232 (291)
T 3hp7_A 187 -PQFE--AGRE--------------QIGKNGIVRESS-------IHEKVLETVTAFAVDYG-FSVKGLDFS 232 (291)
T ss_dssp -GGGT--SCGG--------------GCC-CCCCCCHH-------HHHHHHHHHHHHHHHTT-EEEEEEEEC
T ss_pred -cccc--cChh--------------hcCCCCccCCHH-------HHHHHHHHHHHHHHHCC-CEEEEEEEC
Confidence 1100 0000 000123332111 14457899999999999 999887765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-08 Score=90.49 Aligned_cols=157 Identities=11% Similarity=0.146 Sum_probs=96.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..++ .. +..+++..|.........-+.... +--+. .+++.+.
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~--------~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~~d~~~~ 83 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIF--------VE--------DGYKTYGIEISDLQLKKAENFSRENNFKLNIS---KGDIRKL 83 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHH--------HH--------TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEE---ECCTTSC
T ss_pred CCCEEEEECCCCCHHHHHHH--------Hh--------CCCEEEEEECCHHHHHHHHHHHHhcCCceEEE---ECchhhC
Confidence 35799999999999876553 11 135889999877665544333211 11122 2355555
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+|+++.++|+++ + .|...+|+.-++-|+|||++++.
T Consensus 84 ~~~~~~fD~v~~~~~l~~~~--~----------------------------------~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 84 PFKDESMSFVYSYGTIFHMR--K----------------------------------NDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp CSCTTCEEEEEECSCGGGSC--H----------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCceeEEEEcChHHhCC--H----------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 57889999999999999863 1 25566888889999999999999
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.....+........ + .+.... ...+.......+.+.+|+...++..| |....-..
T Consensus 128 ~~~~~~~~~~~~~~---~------------~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~g-~~~~~~~~ 182 (209)
T 2p8j_A 128 FLTTKDERYNKGEK---I------------GEGEFL-QLERGEKVIHSYVSLEEADKYFKDMK-VLFKEDRV 182 (209)
T ss_dssp EEETTSTTTTCSEE---E------------ETTEEE-ECC-CCCEEEEEECHHHHHHTTTTSE-EEEEEEEE
T ss_pred Eecccchhccchhh---h------------ccccce-eccCCCceeEEecCHHHHHHHHhhcC-ceeeeeee
Confidence 98766532110000 0 000000 00011122236779999999999888 65543333
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-08 Score=92.13 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=91.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|.++..++ +. ..+|+..|+........-+.......-+.-+.+++.+..+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~--------~~---------g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~- 181 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLS--------LL---------GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI- 181 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-
T ss_pred CCCcEEEECCCCCHHHHHHH--------HC---------CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-
Confidence 35789999999999998874 22 2488999987765544433322111112222345544444
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|+.++||++. .++..+|+.-.+-|+|||++++....
T Consensus 182 ~~~fD~i~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 182 QENYDFIVSTVVFMFLNR------------------------------------ERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp CSCEEEEEECSSGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cCCccEEEEccchhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 889999999999999742 14456888889999999998887654
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.....+. -..+.+..+.+|+++.+. + |++...+.
T Consensus 226 ~~~~~~~--------------------------------~~~~~~~~~~~~l~~~~~--~-~~~~~~~~ 259 (286)
T 3m70_A 226 STDDVPC--------------------------------PLPFSFTFAENELKEYYK--D-WEFLEYNE 259 (286)
T ss_dssp CCSSSCC--------------------------------SSCCSCCBCTTHHHHHTT--T-SEEEEEEC
T ss_pred CCCCCCC--------------------------------CCCccccCCHHHHHHHhc--C-CEEEEEEc
Confidence 3321100 011236677888888774 3 88877653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-07 Score=80.30 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=81.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+.. +-+-..+++..+++... .+++...|...-+ ...+|
T Consensus 12 ~g~~vL~~~~g~v~--vD~s~~ml~~a~~~~~~------~~~~~~~d~~~~~-----------------------~~~~~ 60 (176)
T 2ld4_A 12 AGQFVAVVWDKSSP--VEALKGLVDKLQALTGN------EGRVSVENIKQLL-----------------------QSAHK 60 (176)
T ss_dssp TTSEEEEEECTTSC--HHHHHHHHHHHHHHTTT------TSEEEEEEGGGGG-----------------------GGCCC
T ss_pred CCCEEEEecCCcee--eeCCHHHHHHHHHhccc------CcEEEEechhcCc-----------------------cccCC
Confidence 35789999999754 55666677766665421 2454444432100 01137
Q ss_pred CCceeEEEecCccccc-CCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWL-SKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWL-s~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+|+|+.++||+ .+ +..+|+.-++-|||||++++...
T Consensus 61 ~~~fD~V~~~~~l~~~~~~--------------------------------------~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTTLH--------------------------------------SAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp SSCEEEEEECCSTTCCCCC--------------------------------------CHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEeEEEECChhhhcccC--------------------------------------HHHHHHHHHHHCCCCEEEEEEcc
Confidence 8999999999999997 32 12467778899999999999533
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.... .+ .+.|.++.+++.+.++++| | ++ ++.
T Consensus 103 ~~~~-------------------------~~-----------~~~~~~~~~~~~~~l~~aG-f-i~-~~~ 133 (176)
T 2ld4_A 103 VETA-------------------------VD-----------NNSKVKTASKLCSALTLSG-L-VE-VKE 133 (176)
T ss_dssp EESS-------------------------SC-----------SSSSSCCHHHHHHHHHHTT-C-EE-EEE
T ss_pred cccc-------------------------cc-----------cccccCCHHHHHHHHHHCC-C-cE-eec
Confidence 1110 00 1557789999999999999 9 76 444
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=80.71 Aligned_cols=72 Identities=15% Similarity=0.047 Sum_probs=50.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ ++ - +++..|+....... ..+--++. +++.+ .+++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~--------~~---------~-~v~gvD~s~~~~~~-----~~~~~~~~---~d~~~-~~~~ 76 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLR--------KR---------N-TVVSTDLNIRALES-----HRGGNLVR---ADLLC-SINQ 76 (170)
T ss_dssp SCEEEEETCTTCHHHHHHT--------TT---------S-EEEEEESCHHHHHT-----CSSSCEEE---CSTTT-TBCG
T ss_pred CCeEEEeccCccHHHHHHH--------hc---------C-cEEEEECCHHHHhc-----ccCCeEEE---CChhh-hccc
Confidence 3599999999999998873 11 1 88888887655433 11111222 45655 5677
Q ss_pred CceeEEEecCcccccCCCC
Q 018250 138 STLHVVNSFNAMHWLSKTP 156 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p 156 (359)
+++|+++|+..+||.+..+
T Consensus 77 ~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 77 ESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp GGCSEEEECCCCBTTCCCT
T ss_pred CCCCEEEECCCCccCCccc
Confidence 9999999999999977543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=90.82 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=94.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..+..++ +++ |..+++.-|+|. .. ..... .. +.-+.++|++ .+|
T Consensus 194 ~~~vlDvG~G~G~~~~~l~--------~~~-------p~~~~~~~D~~~-~~----~~a~~~~~--v~~~~~d~~~-~~~ 250 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIH--------EIF-------PHLKCTVFDQPQ-VV----GNLTGNEN--LNFVGGDMFK-SIP 250 (358)
T ss_dssp CSEEEEETCTTSHHHHHHH--------HHC-------TTSEEEEEECHH-HH----SSCCCCSS--EEEEECCTTT-CCC
T ss_pred CCEEEEECCCcCHHHHHHH--------HHC-------CCCeEEEeccHH-HH----hhcccCCC--cEEEeCccCC-CCC
Confidence 4699999999999998884 442 456888889852 21 11111 11 3334578877 567
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CceeEEE
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP---GGLMVFS 213 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p---GG~lvl~ 213 (359)
++|+++++.+||++++ .+...+|+.-++.|+| ||++++.
T Consensus 251 --~~D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 251 --SADAVLLKWVLHDWND------------------------------------EQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp --CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred --CceEEEEcccccCCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 4999999999997542 1234578888999999 9999987
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
-...++..... .. .....+.+. .-|+..| ...++.+|++++++++| |++.++...
T Consensus 293 e~~~~~~~~~~--~~-~~~~~~~d~-~~~~~~~-------------g~~~t~~e~~~ll~~aG-f~~~~~~~~ 347 (358)
T 1zg3_A 293 DISIDETSDDR--GL-TELQLDYDL-VMLTMFL-------------GKERTKQEWEKLIYDAG-FSSYKITPI 347 (358)
T ss_dssp ECEECTTCSCH--HH-HHHHHHHHH-HHHHHHS-------------CCCEEHHHHHHHHHHTT-CCEEEEEEE
T ss_pred EeccCCCCccc--hh-hhHHHhhCH-HHhccCC-------------CCCCCHHHHHHHHHHcC-CCeeEEEec
Confidence 65443321100 00 001111111 1111111 13569999999999999 998777653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-07 Score=87.10 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=94.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
+..+|+|+|||+|..+..++ ++ .|..+++.-|+|. . ...... .. +.-+.++|++ .+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-~----~~~a~~~~~--v~~~~~d~~~-~~ 244 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIIC--------ET-------FPKLKCIVFDRPQ-V----VENLSGSNN--LTYVGGDMFT-SI 244 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-H----HTTCCCBTT--EEEEECCTTT-CC
T ss_pred cCceEEEeCCCccHHHHHHH--------HH-------CCCCeEEEeeCHH-H----HhhcccCCC--cEEEeccccC-CC
Confidence 45799999999999888774 34 2567899999942 2 111111 11 3334568876 56
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CceeEE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP---GGLMVF 212 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p---GG~lvl 212 (359)
|+ +|+++++.+||.+++ .+...+|+.-++-|+| ||++++
T Consensus 245 p~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~l~i 286 (352)
T 1fp2_A 245 PN--ADAVLLKYILHNWTD------------------------------------KDCLRILKKCKEAVTNDGKRGKVTI 286 (352)
T ss_dssp CC--CSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred CC--ccEEEeehhhccCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 74 999999999995331 1233578888899999 999998
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.-...++.... ..+.. ...+.++.... + .-..++.+|++++++++| |++.++...
T Consensus 287 ~e~~~~~~~~~------~~~~~-~~~~~d~~~~~---------~--~g~~~t~~e~~~ll~~aG-f~~~~~~~~ 341 (352)
T 1fp2_A 287 IDMVIDKKKDE------NQVTQ-IKLLMDVNMAC---------L--NGKERNEEEWKKLFIEAG-FQHYKISPL 341 (352)
T ss_dssp EECEECTTTSC------HHHHH-HHHHHHHHGGG---------G--TCCCEEHHHHHHHHHHTT-CCEEEEEEE
T ss_pred EEeecCCCCCc------cchhh-hHhhccHHHHh---------c--cCCCCCHHHHHHHHHHCC-CCeeEEEec
Confidence 87654432110 00001 11122221100 0 124468999999999999 988776653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=83.38 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=90.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Cc-ccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RK-YYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~-~~~~~vpg 128 (359)
...+|+|+|||+|..+..++ +. .|..+|+..|+...+...+.+.... .. .|.. +
T Consensus 27 ~~~~vLDiGcG~G~~~~~la--------~~-------~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~---~ 88 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVA--------RQ-------NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLW---A 88 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHH--------HH-------CTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEE---C
T ss_pred CCCEEEEecCCCCHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEe---c
Confidence 45799999999999999884 33 2457999999998877754322111 11 2333 4
Q ss_pred ccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
++.+..+++++ |.++. .+.|...... .-.|...+|+.-++-|||||
T Consensus 89 d~~~l~~~~~~-d~v~~--~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~LkpgG 134 (218)
T 3mq2_A 89 TAERLPPLSGV-GELHV--LMPWGSLLRG-------------------------------VLGSSPEMLRGMAAVCRPGA 134 (218)
T ss_dssp CSTTCCSCCCE-EEEEE--ESCCHHHHHH-------------------------------HHTSSSHHHHHHHHTEEEEE
T ss_pred chhhCCCCCCC-CEEEE--Eccchhhhhh-------------------------------hhccHHHHHHHHHHHcCCCc
Confidence 66665677777 77773 3334221000 00122347777889999999
Q ss_pred eeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 209 LMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 209 ~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
++++++....-.... . +......+......+++...++++| |++..++.+.
T Consensus 135 ~l~~~~~~~~~~~~~-------------------------~--~~~~~~~~~~~~~~~~l~~~l~~aG-f~i~~~~~~~ 185 (218)
T 3mq2_A 135 SFLVALNLHAWRPSV-------------------------P--EVGEHPEPTPDSADEWLAPRYAEAG-WKLADCRYLE 185 (218)
T ss_dssp EEEEEEEGGGBTTBC-------------------------G--GGTTCCCCCHHHHHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred EEEEEeccccccccc-------------------------c--ccccCCccchHHHHHHHHHHHHHcC-CCceeeeccc
Confidence 999976432211000 0 0001111111113456888999999 9999998874
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.9e-08 Score=87.74 Aligned_cols=106 Identities=12% Similarity=0.020 Sum_probs=75.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
.-.+|+|+|||+|..|..+. +... |+=.||.-|....+...+-+.... .-..+.+..+....-.
T Consensus 77 pG~~VldlG~G~G~~~~~la--------~~VG------~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~ 142 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMS--------DIIG------PRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYR 142 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHHC------TTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT
T ss_pred CCCEEEEecCcCCHHHHHHH--------HHhC------CCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccc
Confidence 35799999999999999885 3322 345899999988766666555443 2234555555555556
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++.+++|++|+..+.|| |-..++..-.+-|||||+++++.
T Consensus 143 ~~~~~vDvVf~d~~~~~----------------------------------------~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 143 HLVEGVDGLYADVAQPE----------------------------------------QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp TTCCCEEEEEECCCCTT----------------------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccceEEEEEEeccCCh----------------------------------------hHHHHHHHHHHhccCCCEEEEEE
Confidence 77899999998776665 12236666778899999999987
Q ss_pred cc
Q 018250 215 IT 216 (359)
Q Consensus 215 ~g 216 (359)
-.
T Consensus 183 k~ 184 (233)
T 4df3_A 183 KA 184 (233)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=84.46 Aligned_cols=163 Identities=12% Similarity=0.068 Sum_probs=93.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG- 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~- 132 (359)
..+|+|+|||+|..++.++ +. .|..+++..|+.......+-+.... +-.++. ++..+
T Consensus 42 ~~~vLDiGcG~G~~~~~la--------~~-------~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~---~d~~~~ 103 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMA--------KQ-------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLW---VDGSDL 103 (214)
T ss_dssp CCEEEEESCTTSHHHHHHH--------HH-------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEE---CCSSCG
T ss_pred CCeEEEEccCcCHHHHHHH--------HH-------CCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEe---CCHHHH
Confidence 5689999999999998874 33 2457899999877665544433211 111333 34433
Q ss_pred -CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 133 -RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 133 -~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
..+|++++|+|++++..+|...-... . .-+...||+.-++-|+|||+++
T Consensus 104 ~~~~~~~~~D~i~~~~~~~~~~~~~~~----~--------------------------~~~~~~~l~~~~~~LkpgG~l~ 153 (214)
T 1yzh_A 104 TDYFEDGEIDRLYLNFSDPWPKKRHEK----R--------------------------RLTYKTFLDTFKRILPENGEIH 153 (214)
T ss_dssp GGTSCTTCCSEEEEESCCCCCSGGGGG----G--------------------------STTSHHHHHHHHHHSCTTCEEE
T ss_pred HhhcCCCCCCEEEEECCCCccccchhh----h--------------------------ccCCHHHHHHHHHHcCCCcEEE
Confidence 33788999999999887774311000 0 0023457777888999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhh-ccCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKA-RTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~-d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
+.+... +........+.+.|.-..... |-...++......+++.-..+.| +.|-++.
T Consensus 154 ~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~t~~e~~~~~~g-~~i~~~~ 211 (214)
T 1yzh_A 154 FKTDNR---------------GLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKG-QVIYRVE 211 (214)
T ss_dssp EEESCH---------------HHHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHHHHHTGGGC-CCCEEEE
T ss_pred EEeCCH---------------HHHHHHHHHHHHCCCeeeeccccccccCCCCCCCcHHHHHHHHCC-CCeEEEE
Confidence 876311 112233334444464221111 21222223334456777777777 6665543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-07 Score=84.50 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=69.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..++ +. ..+++..|+........-+.......-+.-+.+++.+..++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~--------~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~ 103 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELA--------ER---------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK 103 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HC---------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC
Confidence 35799999999999998774 21 24789999877655544333221100011223455543444
Q ss_pred CCceeEEEecC-cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFN-AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~-alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|++.. .+|+++ ..|...+|+.-++-|+|||++++.+.
T Consensus 104 -~~fD~v~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 104 -NEFDAVTMFFSTIMYFD------------------------------------EEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp -SCEEEEEECSSGGGGSC------------------------------------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCccEEEEcCCchhcCC------------------------------------HHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 7899999874 445532 02566788888999999999999875
Q ss_pred c
Q 018250 216 T 216 (359)
Q Consensus 216 g 216 (359)
.
T Consensus 147 ~ 147 (252)
T 1wzn_A 147 C 147 (252)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.9e-08 Score=84.34 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=80.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.+. +. +..+++..|+........-+.+.. .. +.-+.+++..
T Consensus 61 ~~~vLDiG~G~G~~~~~l~--------~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~-- 120 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAH--------KL--------GAKSVLATDISDESMTAAEENAALNGIYD--IALQKTSLLA-- 120 (205)
T ss_dssp CCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHHHHHTTCCC--CEEEESSTTT--
T ss_pred CCEEEEECCCCCHHHHHHH--------HC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCc--eEEEeccccc--
Confidence 4799999999999888763 11 234889999876554443333221 11 2222334433
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++..+||+. .+|+.-.+-|+|||++++..
T Consensus 121 ~~~~~fD~i~~~~~~~~~~-----------------------------------------~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 121 DVDGKFDLIVANILAEILL-----------------------------------------DLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp TCCSCEEEEEEESCHHHHH-----------------------------------------HHGGGSGGGEEEEEEEEEEE
T ss_pred cCCCCceEEEECCcHHHHH-----------------------------------------HHHHHHHHhcCCCCEEEEEe
Confidence 4568999999988777631 24445568899999999975
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.... +.+++...+++.| |++..+...
T Consensus 160 ~~~~---------------------------------------------~~~~~~~~~~~~G-f~~~~~~~~ 185 (205)
T 3grz_A 160 IDYL---------------------------------------------QLPKIEQALAENS-FQIDLKMRA 185 (205)
T ss_dssp EEGG---------------------------------------------GHHHHHHHHHHTT-EEEEEEEEE
T ss_pred cCcc---------------------------------------------cHHHHHHHHHHcC-CceEEeecc
Confidence 4322 3667788888899 988776653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=87.24 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=70.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC-
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF- 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~- 135 (359)
...+|+|+|||+|..|+.++ ++ ..+|+..|+..++...+-+..... .+.+++..-.+
T Consensus 45 ~g~~VLDlGcGtG~~a~~La--------~~---------g~~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~ 102 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKAL--------ER---------GASVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAE 102 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSC
T ss_pred CcCEEEEEeCcchHHHHHHH--------hc---------CCEEEEEECCHHHHHHHHHHHHhc-----cceeeeeecccc
Confidence 45799999999999998884 22 248999999888777665555422 12233332212
Q ss_pred ----CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 136 ----PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 136 ----p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+++++|+|+|+.++||+.. .|+..+|+.-++-| |||+++
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~------------------------------------~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTT------------------------------------EEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHH-TTSEEE
T ss_pred cccccCCCccEEEEhhhhHhCCH------------------------------------HHHHHHHHHHHHhC-cCcEEE
Confidence 2679999999999998531 24555677777888 999999
Q ss_pred EEec
Q 018250 212 FSLI 215 (359)
Q Consensus 212 l~~~ 215 (359)
+++.
T Consensus 146 lS~~ 149 (261)
T 3iv6_A 146 ASVK 149 (261)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9885
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=81.02 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=67.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +. .|..+++..|+........-+..+. -.|.. +++....++
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---~d~~~~~~~ 145 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFA--------DA-------LPEITTFGLDVSKVAIKAAAKRYPQ-VTFCV---ASSHRLPFS 145 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHH--------HT-------CTTSEEEEEESCHHHHHHHHHHCTT-SEEEE---CCTTSCSBC
T ss_pred CCCEEEEECCCCCHHHHHHH--------Hh-------CCCCeEEEEeCCHHHHHHHHHhCCC-cEEEE---cchhhCCCC
Confidence 35789999999999998874 22 1345899999887655544433321 11222 355455578
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|+.+.+ +|+.-.+-|+|||++++..++
T Consensus 146 ~~~fD~v~~~~~~~---------------------------------------------~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 146 DTSMDAIIRIYAPC---------------------------------------------KAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp TTCEEEEEEESCCC---------------------------------------------CHHHHHHHEEEEEEEEEEEEC
T ss_pred CCceeEEEEeCChh---------------------------------------------hHHHHHHhcCCCcEEEEEEcC
Confidence 89999999865411 233456789999999999887
Q ss_pred CCC
Q 018250 217 GPS 219 (359)
Q Consensus 217 ~~~ 219 (359)
.+.
T Consensus 181 ~~~ 183 (269)
T 1p91_A 181 PRH 183 (269)
T ss_dssp TTT
T ss_pred HHH
Confidence 654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=85.52 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=70.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccC--C
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGR--L 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~--l 134 (359)
...+|||+|||+|..+..+. +. ...+++..|+...+....-+.......-+.-+-+++.+. .
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~--------~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~ 123 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQ--------EA--------PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHH--------TS--------CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG
T ss_pred CCCeEEEEeccCCHHHHHHH--------hc--------CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc
Confidence 35799999999999988773 11 123789999988666555443321111111223455554 5
Q ss_pred CCCCceeEEEe-cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 FPKSTLHVVNS-FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~p~~s~d~~~S-~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+|++++|+|++ .+++++ .... ..++..+|+.-++-|||||+|++.
T Consensus 124 ~~~~~fD~V~~d~~~~~~-~~~~---------------------------------~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 124 LPDGHFDGILYDTYPLSE-ETWH---------------------------------THQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp SCTTCEEEEEECCCCCBG-GGTT---------------------------------THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cCCCceEEEEECCcccch-hhhh---------------------------------hhhHHHHHHHHHHhcCCCeEEEEE
Confidence 88999999999 666532 1111 124456788888999999999876
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 170 ~~ 171 (236)
T 1zx0_A 170 NL 171 (236)
T ss_dssp CH
T ss_pred ec
Confidence 54
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-07 Score=88.70 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=69.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.++ +. +..+|+..|+. ......-+..... .--+.-+.+++.+-.+
T Consensus 67 ~~~VLDvGcG~G~~~~~la--------~~--------g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 129 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAA--------KA--------GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL 129 (349)
T ss_dssp TCEEEEESCTTSHHHHHHH--------HT--------TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred CCEEEEEeccchHHHHHHH--------HC--------CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC
Confidence 4789999999999988874 21 23489999998 4443333322110 0002222346666668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
|++++|+|+|....+++... .++..+|+.+.+-|+|||+|+..
T Consensus 130 ~~~~fD~Iis~~~~~~l~~~-----------------------------------~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 130 PVEKVDIIISEWMGYCLFYE-----------------------------------SMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp SSSCEEEEEECCCBBTBTBT-----------------------------------CCHHHHHHHHHHHEEEEEEEESC
T ss_pred CCCceEEEEEccccccccCc-----------------------------------hhHHHHHHHHHHhCCCCCEEccc
Confidence 99999999998766664321 14556888999999999999743
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=9.1e-08 Score=86.62 Aligned_cols=139 Identities=11% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhcc-CCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEec
Q 018250 25 QFQRGTVDAAKELVREAIV-NKLDV-GSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFN 102 (359)
Q Consensus 25 ~~Q~~~~~~~~~~l~~ai~-~~~~~-~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~n 102 (359)
..|++.++...|.+.-... ..++. ..+ .....+|+|+|||+|..++.++ +. .|+..|+..
T Consensus 3 ~~q~~~~~~~~~~~~~~~~~~~~d~~~~f---~~~~~~vLDiGcG~G~~~~~lA--------~~-------~p~~~v~gi 64 (218)
T 3dxy_A 3 SGQEHALENYWPVMGVEFSEDMLDFPALF---GREAPVTLEIGFGMGASLVAMA--------KD-------RPEQDFLGI 64 (218)
T ss_dssp ----CHHHHHHHHHBCCCCSSCCCHHHHH---SSCCCEEEEESCTTCHHHHHHH--------HH-------CTTSEEEEE
T ss_pred HHHHHHHHHHhHHhCCCCCCCCCCHHHHc---CCCCCeEEEEeeeChHHHHHHH--------HH-------CCCCeEEEE
Confidence 4577777777776531000 00000 001 1245789999999999998884 33 356789999
Q ss_pred CCCCCchHHHHHhCCC---Cc-ccccccCccccc---CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeec
Q 018250 103 DHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG---RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCT 175 (359)
Q Consensus 103 DLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~---~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~ 175 (359)
|+.......+-+.... .. .|+. ++..+ ..+|++++|.+++++...|-..... +.++.
T Consensus 65 D~s~~~l~~a~~~~~~~~l~nv~~~~---~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~-----------~rr~~-- 128 (218)
T 3dxy_A 65 EVHSPGVGACLASAHEEGLSNLRVMC---HDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHN-----------KRRIV-- 128 (218)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSEEEEC---SCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGG-----------GGSSC--
T ss_pred EecHHHHHHHHHHHHHhCCCcEEEEE---CCHHHHHHHHcCCCChheEEEeCCCCccchhhh-----------hhhhh--
Confidence 9988776655444321 12 2333 34333 3489999999999999888332100 00000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 176 RFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 176 ~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
-..||+.-++-|+|||++++.+
T Consensus 129 -----------------~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 129 -----------------QVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp -----------------SHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------hHHHHHHHHHHcCCCcEEEEEe
Confidence 0137778889999999999987
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-07 Score=81.40 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=66.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-ccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-YYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..++.++ +. .|..+++..|+.......+-+.+.... --+..+.+++.+.+.
T Consensus 40 ~~~~vLDiG~G~G~~~~~la--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 104 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEAS--------NL-------MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD 104 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHH--------HH-------CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT
T ss_pred CCCEEEEECCCCCHHHHHHH--------HH-------CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh
Confidence 45799999999999998884 33 245689999987755544433321100 001122245544444
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+..++|++++..+++ +...+|+.-.+-|+|||++++...
T Consensus 105 ~~~~~D~i~~~~~~~-----------------------------------------~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 105 DLPDPDRVFIGGSGG-----------------------------------------MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp TSCCCSEEEESCCTT-----------------------------------------CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCCCCCEEEECCCCc-----------------------------------------CHHHHHHHHHHhcCCCeEEEEEec
Confidence 447899999876554 122467777889999999999764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-07 Score=77.90 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=68.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL-- 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l-- 134 (359)
...+|+|+|||+|..|..++ ++++ .+..+|+..|+.... .++ .-.|+ -+++.+..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~--------~~~~-----~~~~~v~gvD~s~~~------~~~-~v~~~---~~d~~~~~~~ 78 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVIL--------ERTK-----NYKNKIIGIDKKIMD------PIP-NVYFI---QGEIGKDNMN 78 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHH--------HHTT-----TSCEEEEEEESSCCC------CCT-TCEEE---ECCTTTTSSC
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHcC-----CCCceEEEEeCCccC------CCC-CceEE---Eccccchhhh
Confidence 35799999999999999884 3331 014678888886621 011 11111 12333322
Q ss_pred -----------------------CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHH
Q 018250 135 -----------------------FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRS 191 (359)
Q Consensus 135 -----------------------~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~ 191 (359)
+|++++|+|+|+.++||... + ..+ . + ...+
T Consensus 79 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~-~--~~d-------------------~---~--~~~~ 131 (201)
T 2plw_A 79 NIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN-K--IDD-------------------H---L--NSCE 131 (201)
T ss_dssp CC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSC-H--HHH-------------------H---H--HHHH
T ss_pred hhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC-c--ccC-------------------H---H--HHHH
Confidence 57889999999999999421 0 000 0 0 0112
Q ss_pred HHHHHHHHHHHhhccCceeEEEeccC
Q 018250 192 DFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 192 D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
....+|+.-.+-|+|||+|++.++..
T Consensus 132 ~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 132 LTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 23456777788999999999987653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-06 Score=76.93 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=78.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-Cc-ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RK-YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~-~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +. .+. +++..|+........-+.... .. -+. .+++.+..
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~--------~~-------~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~---~~d~~~~~ 102 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELF--------LG-------GFP-NVTSVDYSSVVVAAMQACYAHVPQLRWE---TMDVRKLD 102 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHH--------HT-------TCC-CEEEEESCHHHHHHHHHHTTTCTTCEEE---ECCTTSCC
T ss_pred CCCeEEEECCCCcHHHHHHH--------Hc-------CCC-cEEEEeCCHHHHHHHHHhcccCCCcEEE---EcchhcCC
Confidence 35789999999999998774 22 112 788889877665555444432 11 122 23554445
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+|+++.++|.+..... ..|+. . .....|...+|+.-.+-|+|||++++..
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~-------~~~~~--------~--------~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGER-------DPWTV--------S--------SEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCS-------CTTSC--------C--------HHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcccEEEECcchhhhccccc-------ccccc--------c--------cchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 78899999999999987542111 11111 0 1123466788988999999999999998
Q ss_pred ccCC
Q 018250 215 ITGP 218 (359)
Q Consensus 215 ~g~~ 218 (359)
++.+
T Consensus 160 ~~~~ 163 (215)
T 2pxx_A 160 SAAP 163 (215)
T ss_dssp SCCH
T ss_pred CCCc
Confidence 7654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=78.21 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=46.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC-C
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL-F 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l-~ 135 (359)
...+|+|+|||+|..+..++ +. ..+|+..|+........-+..+ +-.|+. +++.+.+ +
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~vD~s~~~~~~a~~~~~-~~~~~~---~d~~~~~~~ 106 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFG--------PQ---------AARWAAYDFSPELLKLARANAP-HADVYE---WNGKGELPA 106 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHG--------GG---------SSEEEEEESCHHHHHHHHHHCT-TSEEEE---CCSCSSCCT
T ss_pred CCCeEEEeCCCCCHHHHHHH--------Hc---------CCEEEEEECCHHHHHHHHHhCC-CceEEE---cchhhccCC
Confidence 35799999999999888774 11 2488999987765554444422 112232 3553333 6
Q ss_pred C-CCceeEEEec
Q 018250 136 P-KSTLHVVNSF 146 (359)
Q Consensus 136 p-~~s~d~~~S~ 146 (359)
+ ++++|+|+|+
T Consensus 107 ~~~~~fD~v~~~ 118 (226)
T 3m33_A 107 GLGAPFGLIVSR 118 (226)
T ss_dssp TCCCCEEEEEEE
T ss_pred cCCCCEEEEEeC
Confidence 6 8999999997
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=74.66 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=68.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C-cccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R-KYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~-~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..++.++ +. .|..+++..|+........-+.+.. . .+++. ++..+
T Consensus 25 ~~~~vldiG~G~G~~~~~l~--------~~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---~d~~~ 86 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWL--------RS-------TPQTTAVCFEISEERRERILSNAINLGVSDRIAVQ---QGAPR 86 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHH--------TT-------SSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEE---CCTTG
T ss_pred CCCeEEEeCCCCCHHHHHHH--------HH-------CCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEe---cchHh
Confidence 45799999999999998874 22 2457899999987665554443321 1 23333 34433
Q ss_pred CCCCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 133 RLFPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 133 ~l~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
.+|. +++|+++++.++|| +. +|+.-.+-|+|||++
T Consensus 87 -~~~~~~~~~D~i~~~~~~~~----~~--------------------------------------~l~~~~~~L~~gG~l 123 (178)
T 3hm2_A 87 -AFDDVPDNPDVIFIGGGLTA----PG--------------------------------------VFAAAWKRLPVGGRL 123 (178)
T ss_dssp -GGGGCCSCCSEEEECC-TTC----TT--------------------------------------HHHHHHHTCCTTCEE
T ss_pred -hhhccCCCCCEEEECCcccH----HH--------------------------------------HHHHHHHhcCCCCEE
Confidence 3444 89999999999988 11 566677899999999
Q ss_pred EEEecc
Q 018250 211 VFSLIT 216 (359)
Q Consensus 211 vl~~~g 216 (359)
++....
T Consensus 124 ~~~~~~ 129 (178)
T 3hm2_A 124 VANAVT 129 (178)
T ss_dssp EEEECS
T ss_pred EEEeec
Confidence 988753
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.33 E-value=4.8e-07 Score=78.06 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=70.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..++. . ..+++..|+........-+.+.. ...-+..+.+++.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~--------~---------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~- 113 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALAD--------E---------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE- 113 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGG--------G---------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-
T ss_pred CCCeEEEeCCCCCHHHHHHHH--------c---------CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-
Confidence 457999999999999887741 1 24788888766554443333211 11001112235544
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.++++++|+++++..+||- ..++..+|+.-.+-|+|||++++.
T Consensus 114 ~~~~~~~D~v~~~~~~~~~-------------------------------------~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 114 NVKDRKYNKIITNPPIRAG-------------------------------------KEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp TCTTSCEEEEEECCCSTTC-------------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCceEEEECCCcccc-------------------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4567899999999888871 124556888889999999999999
Q ss_pred eccCC
Q 018250 214 LITGP 218 (359)
Q Consensus 214 ~~g~~ 218 (359)
.....
T Consensus 157 ~~~~~ 161 (194)
T 1dus_A 157 IQTKQ 161 (194)
T ss_dssp EESTH
T ss_pred ECCCC
Confidence 87543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=9e-07 Score=86.53 Aligned_cols=105 Identities=21% Similarity=0.185 Sum_probs=71.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l 134 (359)
...+|||+|||+|..++.++ +. ...+|+..|+. ++....-+.+... .--+.-+.++..+-.
T Consensus 63 ~~~~VLDlGcGtG~ls~~la--------~~--------g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 125 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSA--------QA--------GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS 125 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHH--------HT--------TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred CCCEEEEeccCcCHHHHHHH--------hc--------CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC
Confidence 45799999999999988774 22 11389999998 6655443333211 000122234665555
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+| +++|+|+|....|++... .++..+|+.+.+-|+|||+|++..
T Consensus 126 ~~-~~~D~Iv~~~~~~~l~~e-----------------------------------~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 126 LP-EKVDVIISEWMGYFLLRE-----------------------------------SMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CS-SCEEEEEECCCBTTBTTT-----------------------------------CTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cC-CcceEEEEcChhhcccch-----------------------------------HHHHHHHHHHHhhCCCCeEEEEec
Confidence 66 899999998777775421 145668889999999999997754
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.6e-07 Score=88.38 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=74.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.+. +. ..+|+..|.........-+++.....-+.-+.+++.+.+.+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la--------~~---------g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~ 295 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLA--------RM---------GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTE 295 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHH--------HT---------TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCT
T ss_pred CCCEEEEEeeeCCHHHHHHH--------Hc---------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcccc
Confidence 35799999999999999885 21 24888888866554444333321110012223466666667
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+|+|+..+||...... .+...||+.-.+-|+|||+++++..
T Consensus 296 ~~~fD~Ii~npp~~~~~~~~~---------------------------------~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 296 EARFDIIVTNPPFHVGGAVIL---------------------------------DVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCCEEEEEECCCCCTTCSSCC---------------------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCeEEEEECCchhhcccccH---------------------------------HHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 799999999999998443221 2556788888999999999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.7e-07 Score=74.91 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=71.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL-- 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l-- 134 (359)
...+|+|+|||+|..+..++ +.+ .|..+++..|+.. ... ++ +--+.. +++.+..
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~--------~~~------~~~~~v~~~D~~~-~~~-----~~-~~~~~~---~d~~~~~~~ 77 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVV--------TQI------GGKGRIIACDLLP-MDP-----IV-GVDFLQ---GDFRDELVM 77 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHH--------HHH------CTTCEEEEEESSC-CCC-----CT-TEEEEE---SCTTSHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHH--------HHh------CCCCeEEEEECcc-ccc-----cC-cEEEEE---cccccchhh
Confidence 35699999999999998875 222 1235788888765 321 11 111222 2443322
Q ss_pred ------CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 135 ------FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 135 ------~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
++++++|+++++..+||...... + . .........+|+.-.+-|+|||
T Consensus 78 ~~~~~~~~~~~~D~i~~~~~~~~~~~~~~---~-------------------~-----~~~~~~~~~~l~~~~~~L~~gG 130 (180)
T 1ej0_A 78 KALLERVGDSKVQVVMSDMAPNMSGTPAV---D-------------------I-----PRAMYLVELALEMCRDVLAPGG 130 (180)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHH---H-------------------H-----HHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhhhccCCCCceeEEEECCCccccCCCcc---c-------------------h-----HHHHHHHHHHHHHHHHHcCCCc
Confidence 67889999999999999653110 0 0 0011223667888889999999
Q ss_pred eeEEEeccCCC
Q 018250 209 LMVFSLITGPS 219 (359)
Q Consensus 209 ~lvl~~~g~~~ 219 (359)
+++++.....+
T Consensus 131 ~l~~~~~~~~~ 141 (180)
T 1ej0_A 131 SFVVKVFQGEG 141 (180)
T ss_dssp EEEEEEESSTT
T ss_pred EEEEEEecCCc
Confidence 99998875543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.4e-07 Score=77.15 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=70.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..++.++ +. +..+|+..|+.......+-+.+.. .. -++. +++.+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~--------~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~---~d~~~ 104 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEAL--------SR--------GAASVLFVESDQRSAAVIARNIEALGLSGATLRR---GAVAA 104 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEE---SCHHH
T ss_pred CCCEEEEeCCCcCHHHHHHH--------HC--------CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEE---ccHHH
Confidence 35789999999999998764 11 124789999877665544433321 11 1222 34443
Q ss_pred CC--CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH--hhccCc
Q 018250 133 RL--FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAE--ELVPGG 208 (359)
Q Consensus 133 ~l--~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~--EL~pGG 208 (359)
.+ ++++++|+++++..+||.. .++..+|+...+ -|+|||
T Consensus 105 ~~~~~~~~~fD~i~~~~p~~~~~-------------------------------------~~~~~~l~~~~~~~~L~pgG 147 (189)
T 3p9n_A 105 VVAAGTTSPVDLVLADPPYNVDS-------------------------------------ADVDAILAALGTNGWTREGT 147 (189)
T ss_dssp HHHHCCSSCCSEEEECCCTTSCH-------------------------------------HHHHHHHHHHHHSSSCCTTC
T ss_pred HHhhccCCCccEEEECCCCCcch-------------------------------------hhHHHHHHHHHhcCccCCCe
Confidence 32 4678999999988777721 244456666666 899999
Q ss_pred eeEEEeccCCC
Q 018250 209 LMVFSLITGPS 219 (359)
Q Consensus 209 ~lvl~~~g~~~ 219 (359)
++++....+..
T Consensus 148 ~l~~~~~~~~~ 158 (189)
T 3p9n_A 148 VAVVERATTCA 158 (189)
T ss_dssp EEEEEEETTSC
T ss_pred EEEEEecCCCC
Confidence 99999876544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=75.92 Aligned_cols=110 Identities=11% Similarity=0.061 Sum_probs=65.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..|+.+++ . ..+|+..|+........-+.... .. .|.. +++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~--------~---------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~---~~~~~ 81 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAG--------L---------SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL---DGHEN 81 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHT--------T---------SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE---SCGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHH--------h---------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CcHHH
Confidence 357899999999999998841 1 25888999877665544333321 11 1222 23332
Q ss_pred CC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 133 RL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 133 ~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.. ++++++|+++++. +|+......+.. ...+...+|+.-.+-|+|||+++
T Consensus 82 l~~~~~~~fD~v~~~~--~~~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~LkpgG~l~ 132 (185)
T 3mti_A 82 LDHYVREPIRAAIFNL--GYLPSADKSVIT---------------------------KPHTTLEAIEKILDRLEVGGRLA 132 (185)
T ss_dssp GGGTCCSCEEEEEEEE--C--------------------------------------CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHhhccCCcCEEEEeC--CCCCCcchhccc---------------------------ChhhHHHHHHHHHHhcCCCcEEE
Confidence 11 4578999998863 443321111000 01234456777788999999999
Q ss_pred EEec
Q 018250 212 FSLI 215 (359)
Q Consensus 212 l~~~ 215 (359)
+...
T Consensus 133 i~~~ 136 (185)
T 3mti_A 133 IMIY 136 (185)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9876
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.3e-06 Score=73.80 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=68.7
Q ss_pred cceEEEeecCC-CCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccc-cCC
Q 018250 57 YTVRIADLGCS-VGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFH-GRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs-~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy-~~l 134 (359)
...+|+|+||| +|..++.++. .. ..+|+..|+........-+.+.....-+.-+-++.. -..
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~--------~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~ 118 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEK--------FF--------NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKG 118 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHH--------HH--------CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTT
T ss_pred CCCEEEEcCCCHHHHHHHHHHH--------hc--------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhh
Confidence 45799999999 9999998752 21 247888888765554443332211101111122321 123
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++++|+|+++-.++|..... ..+.. .++..+ .. ...+...+|+.-.+-|+|||++++.+
T Consensus 119 ~~~~~fD~I~~npp~~~~~~~~--~~~~~-~~~~~~-----~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 119 VVEGTFDVIFSAPPYYDKPLGR--VLTER-EAIGGG-----KY-----------GEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp TCCSCEEEEEECCCCC------------------CC-----SS-----------SCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cccCceeEEEECCCCcCCcccc--ccChh-hhhccC-----cc-----------chHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 5679999999998888855411 11100 000000 00 11234568888889999999999986
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 180 ~ 180 (230)
T 3evz_A 180 P 180 (230)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=80.85 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=80.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.+. +. .+ +++..|+........-++......-+..+.+++.. .+|+
T Consensus 121 ~~~VLDiGcG~G~l~~~la--------~~-------g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~ 182 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAE--------KL-------GG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPF 182 (254)
T ss_dssp TCEEEEETCTTSHHHHHHH--------HT-------TC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGG
T ss_pred CCEEEEecCCCcHHHHHHH--------Hh-------CC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcC
Confidence 4689999999999888763 22 12 89999987766554443322111002222234433 2577
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|+++++...|++ ..++..-.+-|+|||+++++....
T Consensus 183 ~~fD~Vv~n~~~~~~-----------------------------------------~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 183 GPFDLLVANLYAELH-----------------------------------------AALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp CCEEEEEEECCHHHH-----------------------------------------HHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred CCCCEEEECCcHHHH-----------------------------------------HHHHHHHHHHcCCCCEEEEEeecc
Confidence 899999997655442 235666678899999999975321
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.+.+++.+.+++.| |++.++...
T Consensus 222 ---------------------------------------------~~~~~v~~~l~~~G-f~~~~~~~~ 244 (254)
T 2nxc_A 222 ---------------------------------------------DRAPLVREAMAGAG-FRPLEEAAE 244 (254)
T ss_dssp ---------------------------------------------GGHHHHHHHHHHTT-CEEEEEEEE
T ss_pred ---------------------------------------------CCHHHHHHHHHHCC-CEEEEEecc
Confidence 12678888888888 988776543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=79.48 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=65.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..++.++ .. .|..+|+..|........+-+.... .. +.-+.+++.+-
T Consensus 70 ~~~~vLDiG~G~G~~~~~la--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~ 132 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIK--------IC-------FPHLHVTIVDSLNKRITFLEKLSEALQLEN--TTFCHDRAETF 132 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHH--------HH-------CTTCEEEEEESCHHHHHHHHHHHHHHTCSS--EEEEESCHHHH
T ss_pred CCCEEEEecCCCCHHHHHHH--------Hh-------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--EEEEeccHHHh
Confidence 45799999999999999884 22 2356899999877554443332211 11 22223455444
Q ss_pred CCC---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 134 LFP---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 134 l~p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
.++ ++++|+|+|... .|+..+|+.-++-|+|||++
T Consensus 133 ~~~~~~~~~fD~V~~~~~------------------------------------------~~~~~~l~~~~~~LkpgG~l 170 (240)
T 1xdz_A 133 GQRKDVRESYDIVTARAV------------------------------------------ARLSVLSELCLPLVKKNGLF 170 (240)
T ss_dssp TTCTTTTTCEEEEEEECC------------------------------------------SCHHHHHHHHGGGEEEEEEE
T ss_pred cccccccCCccEEEEecc------------------------------------------CCHHHHHHHHHHhcCCCCEE
Confidence 443 689999998541 03445788888999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
++..
T Consensus 171 ~~~~ 174 (240)
T 1xdz_A 171 VALK 174 (240)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8863
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.29 E-value=9.3e-07 Score=79.28 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=71.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..++.++ +. .|...++..|+........-+.... .. -|+. ++..+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la--------~~-------~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~---~d~~~ 99 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMA--------KQ-------NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN---IDADT 99 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHH--------HH-------CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEEC---CCGGG
T ss_pred CCceEEEEecCCCHHHHHHH--------HH-------CCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEe---CCHHH
Confidence 34689999999999999884 33 2567899999987665554433211 11 1222 34433
Q ss_pred --CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 133 --RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 133 --~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..+|++++|.++++++..|...... +.++ ....||+.-++-|+|||++
T Consensus 100 l~~~~~~~~~d~v~~~~~~p~~~~~~~-----------~~rl-------------------~~~~~l~~~~~~LkpgG~l 149 (213)
T 2fca_A 100 LTDVFEPGEVKRVYLNFSDPWPKKRHE-----------KRRL-------------------TYSHFLKKYEEVMGKGGSI 149 (213)
T ss_dssp HHHHCCTTSCCEEEEESCCCCCSGGGG-----------GGST-------------------TSHHHHHHHHHHHTTSCEE
T ss_pred HHhhcCcCCcCEEEEECCCCCcCcccc-----------cccc-------------------CcHHHHHHHHHHcCCCCEE
Confidence 2378999999999888777432100 0000 1134777788999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
++.+
T Consensus 150 ~~~t 153 (213)
T 2fca_A 150 HFKT 153 (213)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.9e-06 Score=75.14 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=69.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++ ++ .+ .+++..|+........-+++..... -+.-+.+++.+..
T Consensus 49 ~~~~vLDlG~G~G~~~~~la--------~~-------~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~ 112 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLS--------TR-------TK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHH--------TT-------CC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG
T ss_pred CCCEEEEcCCchhHHHHHHH--------Hh-------cC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh
Confidence 46799999999999988774 22 12 2899999977665544443321000 0112223554333
Q ss_pred --CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHH-HHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 135 --FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETF-QAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 135 --~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y-~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
++++++|+|+|+-.++..+.. ... ++....+. ......++..||+.-++-|+|||+|+
T Consensus 113 ~~~~~~~fD~Ii~npPy~~~~~~--~~~-----------------~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~ 173 (259)
T 3lpm_A 113 DLIPKERADIVTCNPPYFATPDT--SLK-----------------NTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKAN 173 (259)
T ss_dssp GTSCTTCEEEEEECCCC------------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCCccEEEECCCCCCCccc--cCC-----------------CCchHHHhhhccccCCHHHHHHHHHHHccCCcEEE
Confidence 678999999997655443100 000 00000000 11123567889999999999999999
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+..
T Consensus 174 ~~~ 176 (259)
T 3lpm_A 174 FVH 176 (259)
T ss_dssp EEE
T ss_pred EEE
Confidence 965
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-06 Score=74.21 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=70.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l- 134 (359)
..+|+|+|||+|..++.++ +.+. |..+++..|+........-+.+.... --+.-+-+++.+-.
T Consensus 23 ~~~vLDlGcG~G~~~~~l~--------~~~~------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 88 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLA--------SLVG------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK 88 (197)
T ss_dssp TCEEEESCCTTSHHHHHHH--------HHHC------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG
T ss_pred CCEEEEcCCCCCHHHHHHH--------HHhC------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh
Confidence 4699999999999998875 3321 33589999998766555443322100 01122234554433
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++..+ +|..-. .+. .. ..|...+|+.-.+-|+|||++++..
T Consensus 89 ~~~~~fD~v~~~~~~-----~~~~~~----------~~~---~~-----------~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 89 YIDCPVKAVMFNLGY-----LPSGDH----------SIS---TR-----------PETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp TCCSCEEEEEEEESB-----CTTSCT----------TCB---CC-----------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCceEEEEcCCc-----ccCccc----------ccc---cC-----------cccHHHHHHHHHHhCcCCCEEEEEE
Confidence 567899999998666 121100 000 00 1144457888889999999999987
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 140 ~ 140 (197)
T 3eey_A 140 Y 140 (197)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-06 Score=81.65 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=65.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++ +. +..+|+..|+.. .....-+.+.... --+.-+.+++.+..
T Consensus 64 ~~~~VLDiGcGtG~ls~~la--------~~--------g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 126 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAA--------KA--------GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH 126 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred CCCEEEEeeccCcHHHHHHH--------Hc--------CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc
Confidence 34699999999999888774 21 124899999874 4433322221100 00112234565556
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+|++++|+++|....+-+.. ..++..+|+.+.+-|+|||+++
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~~-----------------------------------~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLLF-----------------------------------ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCSCEEEEEECCCBTTBTT-----------------------------------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEEEcCchhhccC-----------------------------------HHHHHHHHHHHHhhcCCCcEEE
Confidence 88899999999752221110 1255668889999999999998
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-06 Score=75.75 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=82.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCC-CCchHHH---HHhCCC----CcccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHT-ENDFNTL---FRTLPP----RKYYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp-~NDFn~l---f~~l~~----~~~~~~~vpg 128 (359)
...+|+|+|||+|..++.++ ++ .|..+|+..|+. .++.... -+.... +-.|..+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la--------~~-------~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~--- 85 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLA--------IN-------DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIA--- 85 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHH--------HT-------CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECC---
T ss_pred CCCEEEEEeccCcHHHHHHH--------Hh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEc---
Confidence 35789999999999988874 22 356799999998 4443221 111111 1123332
Q ss_pred ccccCCCCC---CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018250 129 SFHGRLFPK---STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV 205 (359)
Q Consensus 129 sfy~~l~p~---~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 205 (359)
+... + |. +.+|.+++++...++ ...-..+...+|+.-++-||
T Consensus 86 d~~~-l-~~~~~d~v~~i~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~r~Lk 130 (225)
T 3p2e_A 86 AAES-L-PFELKNIADSISILFPWGTL---------------------------------LEYVIKPNRDILSNVADLAK 130 (225)
T ss_dssp BTTB-C-CGGGTTCEEEEEEESCCHHH---------------------------------HHHHHTTCHHHHHHHHTTEE
T ss_pred CHHH-h-hhhccCeEEEEEEeCCCcHH---------------------------------hhhhhcchHHHHHHHHHhcC
Confidence 3322 1 32 556666665432221 00011233457778899999
Q ss_pred cCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 206 PGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 206 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
|||+|++.+....+. +.+...+. +. ....|.|++. +|+.+.++++| |++..++.
T Consensus 131 pGG~l~i~~~~~~~~------------~~~~~~~~-----~~-------~~~~~~~~~~-~el~~~l~~aG-f~v~~~~~ 184 (225)
T 3p2e_A 131 KEAHFEFVTTYSDSY------------EEAEIKKR-----GL-------PLLSKAYFLS-EQYKAELSNSG-FRIDDVKE 184 (225)
T ss_dssp EEEEEEEEECCCC--------------------------------------CCHHHHHS-HHHHHHHHHHT-CEEEEEEE
T ss_pred CCcEEEEEEeccccc------------hhchhhhc-----CC-------CCCChhhcch-HHHHHHHHHcC-CCeeeeee
Confidence 999999954322211 00000000 10 0112234333 46999999999 99999999
Q ss_pred ee
Q 018250 286 LD 287 (359)
Q Consensus 286 ~~ 287 (359)
+.
T Consensus 185 ~~ 186 (225)
T 3p2e_A 185 LD 186 (225)
T ss_dssp EC
T ss_pred cC
Confidence 85
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=1e-06 Score=86.35 Aligned_cols=109 Identities=14% Similarity=0.031 Sum_probs=69.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|..++.++ +. .|..+|+..|.........-++... ...-+..+.+++++
T Consensus 223 ~~~VLDlGcG~G~~s~~la--------~~-------~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~- 286 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS- 286 (375)
T ss_dssp CSEEEEETCTTCHHHHHHH--------HH-------CTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred CCeEEEEeCcchHHHHHHH--------HH-------CCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence 3799999999999999885 33 2457899999876554443333221 01111122345555
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+|+|+-.+|+...++.. ....||+.-.+-|+|||+++++
T Consensus 287 ~~~~~~fD~Ii~nppfh~~~~~~~~---------------------------------~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 287 GVEPFRFNAVLCNPPFHQQHALTDN---------------------------------VAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp TCCTTCEEEEEECCCC-------CC---------------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCCeeEEEECCCcccCcccCHH---------------------------------HHHHHHHHHHHhCCCCcEEEEE
Confidence 5688999999999999985443321 1224777788899999999997
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 334 ~n 335 (375)
T 4dcm_A 334 AN 335 (375)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=76.31 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=66.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..+.. . ..+++..|.........-+.+.. .. +.-+.++..+.
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~--------~---------~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~ 137 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAH--------L---------VQHVCSVERIKGLQWQARRRLKNLDLHN--VSTRHGDGWQG 137 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------H---------SSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGC
T ss_pred CCCEEEEEcCCCCHHHHHHHH--------h---------CCEEEEEecCHHHHHHHHHHHHHcCCCc--eEEEECCcccC
Confidence 457999999999999988752 2 13788888876555444333221 11 11223466666
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+.+++++|+|+++.++||+.+ . -.+-|+|||+|++.
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~---~-----------------------------------------~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT---A-----------------------------------------LMTQLDEGGILVLP 173 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT---H-----------------------------------------HHHTEEEEEEEEEE
T ss_pred CccCCCccEEEEccchhhhhH---H-----------------------------------------HHHhcccCcEEEEE
Confidence 667789999999999998532 1 24679999999999
Q ss_pred ecc
Q 018250 214 LIT 216 (359)
Q Consensus 214 ~~g 216 (359)
+..
T Consensus 174 ~~~ 176 (210)
T 3lbf_A 174 VGE 176 (210)
T ss_dssp ECS
T ss_pred EcC
Confidence 876
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=78.22 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=66.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC--------CC-Cc-ccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL--------PP-RK-YYAAG 125 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l--------~~-~~-~~~~~ 125 (359)
.+..+|+|+|||+|..++.++ +. .|...++..|+........-+.+ .. .. -|+.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la--------~~-------~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~- 108 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELS--------PL-------FPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLR- 108 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHG--------GG-------STTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEE-
T ss_pred CCCCeEEEEccCCcHHHHHHH--------HH-------CCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-
Confidence 346789999999999998874 22 35678899998775544322110 01 11 1333
Q ss_pred cCccccc---CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 126 VPGSFHG---RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAE 202 (359)
Q Consensus 126 vpgsfy~---~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 202 (359)
++... ..||++++|.+++++.-.|..+... +.++ ....||+.-++
T Consensus 109 --~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~-----------krr~-------------------~~~~~l~~~~~ 156 (235)
T 3ckk_A 109 --SNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKH-----------KWRI-------------------ISPTLLAEYAY 156 (235)
T ss_dssp --CCTTTCHHHHCCTTCEEEEEEESCC----------------------C-------------------CCHHHHHHHHH
T ss_pred --CcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhh-----------hhhh-------------------hhHHHHHHHHH
Confidence 23332 2378999999999887777432100 0000 11347778889
Q ss_pred hhccCceeEEEe
Q 018250 203 ELVPGGLMVFSL 214 (359)
Q Consensus 203 EL~pGG~lvl~~ 214 (359)
-|+|||+|++.+
T Consensus 157 ~LkpGG~l~~~t 168 (235)
T 3ckk_A 157 VLRVGGLVYTIT 168 (235)
T ss_dssp HEEEEEEEEEEE
T ss_pred HCCCCCEEEEEe
Confidence 999999999887
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=6e-06 Score=76.66 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=74.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.++ +. .|..+++..|.........-++... .. +.-+.+++.+ .
T Consensus 110 ~~~vLDlG~GsG~~~~~la--------~~-------~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~--v~~~~~d~~~-~ 171 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALA--------SE-------RPDCEIIAVDRMPDAVSLAQRNAQHLAIKN--IHILQSDWFS-A 171 (276)
T ss_dssp CCEEEEETCTTSHHHHHHH--------HH-------CTTSEEEEECSSHHHHHHHHHHHHHHTCCS--EEEECCSTTG-G
T ss_pred CCEEEEecCCccHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCc--eEEEEcchhh-h
Confidence 4689999999999998874 22 2456899999876554443333211 11 1222345544 3
Q ss_pred CCCCceeEEEecCcccccCCCCc---ccccc-cccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPK---VNMLE-KSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~---~~~~~-~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+|++++|+|+|+...+|... +. .+... ...++.. ......++..+++.-.+-|+|||++
T Consensus 172 ~~~~~fD~Iv~npPy~~~~~-~~l~~~v~~~~p~~al~~----------------~~~g~~~~~~~l~~~~~~LkpgG~l 234 (276)
T 2b3t_A 172 LAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVA----------------ADSGMADIVHIIEQSRNALVSGGFL 234 (276)
T ss_dssp GTTCCEEEEEECCCCBCTTC-HHHHSSGGGSSCSTTTBC----------------HHHHTHHHHHHHHHHGGGEEEEEEE
T ss_pred cccCCccEEEECCCCCCccc-cccChhhhhcCcHHHHcC----------------CCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 56789999999988877543 11 00000 0000000 0112346677898889999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
++..
T Consensus 235 ~~~~ 238 (276)
T 2b3t_A 235 LLEH 238 (276)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9874
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-06 Score=82.63 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=70.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------------Cccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------------RKYYAA 124 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------------~~~~~~ 124 (359)
+..+|+|+|||||..+..++-. +.+..+.. ....+|+..|+........-+...+ .+||.-
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~----L~e~~~~~---~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~ 177 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAIT----LADALGMA---PGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMR 177 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHH----HHHHHCSC---TTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEE
T ss_pred CCcEEEEeeccCChhHHHHHHH----HHHhcccC---CCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhc
Confidence 3589999999999854333211 12332211 1147999999998776665544311 123311
Q ss_pred c--------------------cCcccccCCCC-CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH
Q 018250 125 G--------------------VPGSFHGRLFP-KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE 183 (359)
Q Consensus 125 ~--------------------vpgsfy~~l~p-~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~ 183 (359)
+ ..++..+..+| .+++|+|+|...|+|+.. +
T Consensus 178 ~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~--~-------------------------- 229 (274)
T 1af7_A 178 GTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK--T-------------------------- 229 (274)
T ss_dssp CCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH--H--------------------------
T ss_pred cccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCH--H--------------------------
Confidence 0 11223332244 578999999999999752 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 184 TFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 184 ~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+....|+.-++-|+|||.|++
T Consensus 230 --------~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 230 --------TQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp --------HHHHHHHHHGGGEEEEEEEEE
T ss_pred --------HHHHHHHHHHHHhCCCcEEEE
Confidence 234567778899999999987
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-06 Score=75.65 Aligned_cols=99 Identities=12% Similarity=-0.016 Sum_probs=61.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCch---HHHHHhCCCCcccccccCccccc-
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDF---NTLFRTLPPRKYYAAGVPGSFHG- 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDF---n~lf~~l~~~~~~~~~vpgsfy~- 132 (359)
...+|+|+|||+|..|..+. +..+ ..+|+..|+...+. ....+... +-.++. ++...
T Consensus 57 ~g~~VLDlGcGtG~~~~~la--------~~~~-------~~~V~gvD~s~~~l~~~~~~a~~~~-~v~~~~---~d~~~~ 117 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLA--------DIVD-------EGIIYAVEYSAKPFEKLLELVRERN-NIIPLL---FDASKP 117 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHH--------HHTT-------TSEEEEECCCHHHHHHHHHHHHHCS-SEEEEC---SCTTCG
T ss_pred CCCEEEEECCcCCHHHHHHH--------HHcC-------CCEEEEEECCHHHHHHHHHHHhcCC-CeEEEE---cCCCCc
Confidence 35699999999999988774 3321 34899999887532 22222222 111222 23322
Q ss_pred ---CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 133 ---RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 133 ---~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
..++ +++|+++|+.+-++ +...+|+.-++-|||||+
T Consensus 118 ~~~~~~~-~~fD~V~~~~~~~~----------------------------------------~~~~~l~~~~r~LkpgG~ 156 (210)
T 1nt2_A 118 WKYSGIV-EKVDLIYQDIAQKN----------------------------------------QIEILKANAEFFLKEKGE 156 (210)
T ss_dssp GGTTTTC-CCEEEEEECCCSTT----------------------------------------HHHHHHHHHHHHEEEEEE
T ss_pred hhhcccc-cceeEEEEeccChh----------------------------------------HHHHHHHHHHHHhCCCCE
Confidence 1234 89999999721110 222356677889999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
|++.+.
T Consensus 157 l~i~~~ 162 (210)
T 1nt2_A 157 VVIMVK 162 (210)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999964
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.17 E-value=5.3e-06 Score=74.85 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=63.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-Cc-ccccccCccccc--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RK-YYAAGVPGSFHG-- 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~-~~~~~vpgsfy~-- 132 (359)
...+|+|+|||+|..+..++ +.+ +..+|+..|........+-+.... .. .++. +++..
T Consensus 74 ~~~~VLDlGcG~G~~~~~la--------~~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~---~d~~~~~ 135 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVA--------DIA-------DKGIVYAIEYAPRIMRELLDACAERENIIPIL---GDANKPQ 135 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHH--------HHT-------TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEE---CCTTCGG
T ss_pred CCCEEEEEcccCCHHHHHHH--------HHc-------CCcEEEEEECCHHHHHHHHHHhhcCCCeEEEE---CCCCCcc
Confidence 35789999999999998884 332 234889999887555444443322 11 2333 23333
Q ss_pred --CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 133 --RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 133 --~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..++ +++|+++ |++.+ |. ....+|+.-.+-|+|||++
T Consensus 136 ~~~~~~-~~~D~v~-----~~~~~-~~----------------------------------~~~~~l~~~~~~LkpgG~l 174 (230)
T 1fbn_A 136 EYANIV-EKVDVIY-----EDVAQ-PN----------------------------------QAEILIKNAKWFLKKGGYG 174 (230)
T ss_dssp GGTTTS-CCEEEEE-----ECCCS-TT----------------------------------HHHHHHHHHHHHEEEEEEE
T ss_pred cccccC-ccEEEEE-----EecCC-hh----------------------------------HHHHHHHHHHHhCCCCcEE
Confidence 4455 7899998 44221 10 1234667778899999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
++++.
T Consensus 175 ~i~~~ 179 (230)
T 1fbn_A 175 MIAIK 179 (230)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99843
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.3e-07 Score=77.96 Aligned_cols=130 Identities=11% Similarity=-0.024 Sum_probs=65.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
....+|+|+|||+|..++.++ +. .|..+++..|+........-+.+.....-+.-+.+++.+ .+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~--------~~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~ 92 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIA--------LA-------CPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WL 92 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHH--------HH-------CTTEEEEEEECC-------------------CCHHHHHH-HH
T ss_pred CCCCEEEEecCCHhHHHHHHH--------Hh-------CCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hh
Confidence 346899999999999998885 33 235689999997765544333332211112222345555 55
Q ss_pred CC-----CceeEEEecCcccccCCCC---cccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 136 PK-----STLHVVNSFNAMHWLSKTP---KVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 136 p~-----~s~d~~~S~~alHWLs~~p---~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
++ +++|+|+++-.+++..... ..+.... .. ..... .......+..||+.-.+-|+||
T Consensus 93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~-----~~-~~~~~---------~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYE-----PR-LALDG---------GEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp HHHHHTTCCBSEEEECCCCCC---------------------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred hhhhhccCcccEEEECCCCCCCccccccChhhhccC-----cc-ccccC---------CCcHHHHHHHHHHHHHHHhcCC
Confidence 65 9999999987776644321 1111000 00 00000 0011223467888888999999
Q ss_pred ceeEEEecc
Q 018250 208 GLMVFSLIT 216 (359)
Q Consensus 208 G~lvl~~~g 216 (359)
|++++...+
T Consensus 158 G~l~~~~~~ 166 (215)
T 4dzr_A 158 RAGVFLEVG 166 (215)
T ss_dssp SEEEEEECT
T ss_pred CeEEEEEEC
Confidence 994444443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-06 Score=84.74 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=68.0
Q ss_pred cceEEEeecCC------CCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccc
Q 018250 57 YTVRIADLGCS------VGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs------~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsf 130 (359)
++.+|||+||| +|..|+.++ +++ .|..+|+..|+..++. + ..++--|+. |+.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la--------~~~------fP~a~V~GVDiSp~m~---~--~~~rI~fv~---GDa 273 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMW--------KSF------FPRGQIYGLDIMDKSH---V--DELRIRTIQ---GDQ 273 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHH--------HHH------CTTCEEEEEESSCCGG---G--CBTTEEEEE---CCT
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHH--------HHh------CCCCEEEEEECCHHHh---h--cCCCcEEEE---ecc
Confidence 46899999999 788888774 222 2457999999988762 1 111222333 344
Q ss_pred ccCCCC------CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018250 131 HGRLFP------KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL 204 (359)
Q Consensus 131 y~~l~p------~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 204 (359)
.+..|+ ++++|+|+|..+ ||. .|+..+|+.-.+-|
T Consensus 274 ~dlpf~~~l~~~d~sFDlVisdgs-H~~--------------------------------------~d~~~aL~el~rvL 314 (419)
T 3sso_A 274 NDAEFLDRIARRYGPFDIVIDDGS-HIN--------------------------------------AHVRTSFAALFPHV 314 (419)
T ss_dssp TCHHHHHHHHHHHCCEEEEEECSC-CCH--------------------------------------HHHHHHHHHHGGGE
T ss_pred cccchhhhhhcccCCccEEEECCc-ccc--------------------------------------hhHHHHHHHHHHhc
Confidence 443355 689999999865 542 14456788888999
Q ss_pred ccCceeEEEecc
Q 018250 205 VPGGLMVFSLIT 216 (359)
Q Consensus 205 ~pGG~lvl~~~g 216 (359)
||||++++.-+-
T Consensus 315 KPGGvlVi~Dl~ 326 (419)
T 3sso_A 315 RPGGLYVIEDMW 326 (419)
T ss_dssp EEEEEEEEECGG
T ss_pred CCCeEEEEEecc
Confidence 999999997543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.3e-07 Score=86.86 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=72.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ +. .|..+++..|+........-+.+.....-..-+.+++.. +++
T Consensus 197 ~~~VLDlGcG~G~~~~~la--------~~-------~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~ 259 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFA--------RH-------SPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVK 259 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHH--------HH-------CTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCC
T ss_pred CCeEEEecCccCHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc--ccc
Confidence 3589999999999998874 33 245689999987655444333321100000112345544 347
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|+|+..+||.... ...+...+|+.-++-|+|||++++...
T Consensus 260 ~~fD~Iv~~~~~~~g~~~---------------------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 260 GRFDMIISNPPFHDGMQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SCEEEEEECCCCCSSSHH---------------------------------HHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCeeEEEECCCcccCccC---------------------------------CHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 899999999999983210 123567789999999999999999764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=73.51 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=61.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++. . . .+++..|.........-+.+..... -+..+.+++.+ .
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~--------~-------~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAG--------R-------V--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A 94 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHT--------T-------S--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H
T ss_pred CCCEEEEECCCCCHHHHHHHH--------h-------c--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h
Confidence 357999999999999887741 1 1 4778888765444333222110000 01111234433 3
Q ss_pred CCC-CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 FPK-STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~p~-~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+|+ +++|+++++..+|+ +..+|+.-.+-|+|||++++.
T Consensus 95 ~~~~~~~D~v~~~~~~~~-----------------------------------------~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 95 LCKIPDIDIAVVGGSGGE-----------------------------------------LQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp HTTSCCEEEEEESCCTTC-----------------------------------------HHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCCCCCEEEECCchHH-----------------------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 343 68999999766543 224677778899999999998
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 134 ~~ 135 (192)
T 1l3i_A 134 AI 135 (192)
T ss_dssp EC
T ss_pred ec
Confidence 74
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.2e-06 Score=74.43 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=50.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+.. .. .+++..|.........-+...... -+.-+.+++.+.+.+
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~--------~~---------~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAE--------IV---------DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLGYEE 131 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------HS---------SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGCCGG
T ss_pred CCCEEEEEcCCCCHHHHHHHH--------Hc---------CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCccccccc
Confidence 356999999999999988852 21 367888876655444433333211 111223455443445
Q ss_pred CCceeEEEecCccccc
Q 018250 137 KSTLHVVNSFNAMHWL 152 (359)
Q Consensus 137 ~~s~d~~~S~~alHWL 152 (359)
++++|+|+++.++|++
T Consensus 132 ~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTL 147 (231)
T ss_dssp GCCEEEEEESSBBSSC
T ss_pred CCCccEEEECCcHHHH
Confidence 7899999999999884
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-06 Score=77.00 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=63.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--c-ccccccCcccc--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--K-YYAAGVPGSFH-- 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~-~~~~~vpgsfy-- 131 (359)
...+|||+|||+|.++..+. +. .| .+++.-|+.......+-+..... . .++. |+..
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~--------~~-------~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~---~~a~~~ 120 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQ--------EA-------PI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLK---GLWEDV 120 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHT--------TS-------CE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEE---SCHHHH
T ss_pred CCCeEEEECCCccHHHHHHH--------Hh-------CC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEe---ehHHhh
Confidence 45799999999999888763 11 12 36778888765544433322211 1 1122 2322
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
..-+|++++|.++.-........ ....|...||+.-++-|||||+|+
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~---------------------------------~~~~~~~~~~~e~~rvLkPGG~l~ 167 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEET---------------------------------WHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGG---------------------------------TTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred cccccccCCceEEEeeeecccch---------------------------------hhhcchhhhhhhhhheeCCCCEEE
Confidence 22378999999975322211100 011366678888899999999997
Q ss_pred EE
Q 018250 212 FS 213 (359)
Q Consensus 212 l~ 213 (359)
+.
T Consensus 168 f~ 169 (236)
T 3orh_A 168 YC 169 (236)
T ss_dssp EC
T ss_pred EE
Confidence 64
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.7e-06 Score=69.81 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=47.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..++.++. +..+++..|.........-+.+..... -+.-+.+++.+ .+
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~ 96 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK-----------------RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VL 96 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT-----------------TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HG
T ss_pred CCCEEEEeCCCCCHHHHHHHh-----------------cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cc
Confidence 356999999999999988841 245889999876554444333211000 01122345555 66
Q ss_pred CCCceeEEEecCc
Q 018250 136 PKSTLHVVNSFNA 148 (359)
Q Consensus 136 p~~s~d~~~S~~a 148 (359)
|++++|+++++.+
T Consensus 97 ~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 97 DKLEFNKAFIGGT 109 (183)
T ss_dssp GGCCCSEEEECSC
T ss_pred cCCCCcEEEECCc
Confidence 7789999999766
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-06 Score=80.83 Aligned_cols=104 Identities=10% Similarity=-0.005 Sum_probs=58.2
Q ss_pred chHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCce
Q 018250 19 SYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQ 98 (359)
Q Consensus 19 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~ 98 (359)
.|......|.+....++..++. +. .....+|+|+|||+|..|..+. +... |.-+
T Consensus 50 ~yr~w~~~~skla~~ll~~l~~-------~~-----l~~g~~VLDlG~GtG~~t~~la--------~~v~------~~G~ 103 (232)
T 3id6_C 50 EYREWNAFRSKLAGAILKGLKT-------NP-----IRKGTKVLYLGAASGTTISHVS--------DIIE------LNGK 103 (232)
T ss_dssp EEEECCTTTCHHHHHHHTTCSC-------CS-----CCTTCEEEEETCTTSHHHHHHH--------HHHT------TTSE
T ss_pred chhhhchHHHHHHHHHHhhhhh-------cC-----CCCCCEEEEEeecCCHHHHHHH--------HHhC------CCCE
Confidence 3777777888876554333311 11 1335899999999999988874 2221 3458
Q ss_pred EEecCCCCCchHHHH---HhCCCCcccccccCcccccCCCCCCceeEEEecCcc
Q 018250 99 VFFNDHTENDFNTLF---RTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAM 149 (359)
Q Consensus 99 v~~nDLp~NDFn~lf---~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~al 149 (359)
|+..|+...+...+. +..+ +-.++.+-...........+++|+++|..+.
T Consensus 104 V~avD~s~~~l~~l~~~a~~r~-nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~ 156 (232)
T 3id6_C 104 AYGVEFSPRVVRELLLVAQRRP-NIFPLLADARFPQSYKSVVENVDVLYVDIAQ 156 (232)
T ss_dssp EEEEECCHHHHHHHHHHHHHCT-TEEEEECCTTCGGGTTTTCCCEEEEEECCCC
T ss_pred EEEEECcHHHHHHHHHHhhhcC-CeEEEEcccccchhhhccccceEEEEecCCC
Confidence 999999876543222 1111 1112222111110111124689999998664
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=7e-06 Score=75.64 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=65.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~ 132 (359)
....+|+|+|||+|..++.++ .. .|..+|+..|........+-+.... .. +.-+.++..+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~--v~~~~~d~~~ 141 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLK--------IV-------RPELELVLVDATRKKVAFVERAIEVLGLKG--ARALWGRAEV 141 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHH--------HH-------CTTCEEEEEESCHHHHHHHHHHHHHHTCSS--EEEEECCHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCc--eEEEECcHHH
Confidence 346799999999999999884 22 2467899999887555444333211 11 2222334443
Q ss_pred CCC---CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 133 RLF---PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 133 ~l~---p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
-.. +++++|+|+|.... ++..+++.-.+-|+|||+
T Consensus 142 ~~~~~~~~~~fD~I~s~a~~------------------------------------------~~~~ll~~~~~~LkpgG~ 179 (249)
T 3g89_A 142 LAREAGHREAYARAVARAVA------------------------------------------PLCVLSELLLPFLEVGGA 179 (249)
T ss_dssp HTTSTTTTTCEEEEEEESSC------------------------------------------CHHHHHHHHGGGEEEEEE
T ss_pred hhcccccCCCceEEEECCcC------------------------------------------CHHHHHHHHHHHcCCCeE
Confidence 332 35899999985321 234577778899999999
Q ss_pred eEEEe
Q 018250 210 MVFSL 214 (359)
Q Consensus 210 lvl~~ 214 (359)
+++..
T Consensus 180 l~~~~ 184 (249)
T 3g89_A 180 AVAMK 184 (249)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98765
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.5e-06 Score=71.64 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=68.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcC--CCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccC-
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNL--SLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGR- 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~--~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~- 133 (359)
...+|+|+|||+|..|+.++ ++++.. ....|..+|+..|+.... .++ .--+. ..+++...
T Consensus 22 ~~~~vLDlGcG~G~~~~~la--------~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~-~~~~~--~~~d~~~~~ 84 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAV--------QKVNAAGTDPSSPVGFVLGVDLLHIF------PLE-GATFL--CPADVTDPR 84 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHH--------HHTTTTCCCTTSCCCEEEEECSSCCC------CCT-TCEEE--CSCCTTSHH
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHhccccccccCCCceEEEEechhcc------cCC-CCeEE--EeccCCCHH
Confidence 35799999999999999885 332210 001233689999987621 011 11122 02333221
Q ss_pred -------CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 134 -------LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 134 -------l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
.++++++|+|+|..++||.-.. ..+ ..........+|+.-.+-|+|
T Consensus 85 ~~~~~~~~~~~~~fD~V~~~~~~~~~~~~---~~~------------------------~~~~~~~~~~~l~~~~~~Lkp 137 (196)
T 2nyu_A 85 TSQRILEVLPGRRADVILSDMAPNATGFR---DLD------------------------HDRLISLCLTLLSVTPDILQP 137 (196)
T ss_dssp HHHHHHHHSGGGCEEEEEECCCCCCCSCH---HHH------------------------HHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHhcCCCCCcEEEeCCCCCCCCCc---ccC------------------------HHHHHHHHHHHHHHHHHHhcC
Confidence 2567799999998877763210 000 000112335677778899999
Q ss_pred CceeEEEeccC
Q 018250 207 GGLMVFSLITG 217 (359)
Q Consensus 207 GG~lvl~~~g~ 217 (359)
||+|++..+..
T Consensus 138 gG~lv~~~~~~ 148 (196)
T 2nyu_A 138 GGTFLCKTWAG 148 (196)
T ss_dssp EEEEEEEECCS
T ss_pred CCEEEEEecCC
Confidence 99999987643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.8e-06 Score=80.48 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=65.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.++ +. +..+|+..|+. .....+-+.+..... -+.-+.+++.+-.+
T Consensus 39 ~~~VLDiGcGtG~ls~~la--------~~--------g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 101 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAA--------KH--------GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL 101 (328)
T ss_dssp TCEEEEETCTTSHHHHHHH--------HT--------CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred CCEEEEecCccHHHHHHHH--------HC--------CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC
Confidence 4689999999999888764 21 12489999987 443333222211000 01122346655557
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
|++++|+++|....+.+... .++..+|+.+.+-|+|||+++.
T Consensus 102 ~~~~~D~Ivs~~~~~~l~~~-----------------------------------~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 102 PFPKVDIIISEWMGYFLLYE-----------------------------------SMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SSSCEEEEEECCCBTTBSTT-----------------------------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred CCCcccEEEEeCchhhcccH-----------------------------------HHHHHHHHHHHhhcCCCeEEEE
Confidence 88999999997544433211 1345688888999999999973
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-06 Score=73.43 Aligned_cols=81 Identities=12% Similarity=0.017 Sum_probs=50.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..++ +.. .|..+++..|.........-+.+.. .. +.-+.+++...
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~ 140 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTA--------EIV------GEDGLVVSIERIPELAEKAERTLRKLGYDN--VIVIVGDGTLG 140 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEEESCHHHHHHHHHHHHHHTCTT--EEEEESCGGGC
T ss_pred CCCEEEEECCCccHHHHHHH--------HHh------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--eEEEECCcccC
Confidence 35699999999999998885 222 1335889999876554443332211 11 11122344333
Q ss_pred CCCCCceeEEEecCcccccC
Q 018250 134 LFPKSTLHVVNSFNAMHWLS 153 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs 153 (359)
+.+++++|+++++.++|++.
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~ 160 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIP 160 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCC
T ss_pred CCCCCCeeEEEECCchHHHH
Confidence 33378999999999999843
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.7e-07 Score=79.43 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=55.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---CC-cccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---PR-KYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---~~-~~~~~~vpgsfy~ 132 (359)
.+.+|+|+|||+|+.++.++ . ..|..++...|....+-.-.-+.+. .. .+-+. +.-.
T Consensus 49 ~~~~VLDlGCG~GplAl~l~--------~-------~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~----d~~~ 109 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQW--------N-------ENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFL----NKES 109 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHH--------C-------SSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEE----CCHH
T ss_pred CCCeEEEecCCCCHHHHHHH--------h-------cCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEe----cccc
Confidence 46899999999999999884 1 2567899999998755443333221 11 22111 2222
Q ss_pred CCCCCCceeEEEecCcccccCCCCc
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPK 157 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~ 157 (359)
. .|+.++|++.++..+|-|.+.+.
T Consensus 110 ~-~~~~~~DvVLa~k~LHlL~~~~~ 133 (200)
T 3fzg_A 110 D-VYKGTYDVVFLLKMLPVLKQQDV 133 (200)
T ss_dssp H-HTTSEEEEEEEETCHHHHHHTTC
T ss_pred c-CCCCCcChhhHhhHHHhhhhhHH
Confidence 2 58899999999999999855443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.3e-06 Score=75.05 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=71.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccc--cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKY--YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~--~~~~vpgsfy 131 (359)
...+|+|+|||+|..++.++ ++ .|..+++..|+-.......-+++.. ... -+.-+.+++.
T Consensus 36 ~~~~VLDlG~G~G~~~l~la--------~~-------~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~ 100 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVA--------AR-------LEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVT 100 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHH--------HH-------CTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTT
T ss_pred CCCEEEEeCChHhHHHHHHH--------Hh-------CCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHH
Confidence 45799999999999998885 33 2346888888876555544444432 100 0111223554
Q ss_pred cC-------CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 018250 132 GR-------LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQ-FRSDFESILNARAEE 203 (359)
Q Consensus 132 ~~-------l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q-~~~D~~~fL~~Ra~E 203 (359)
+- .++++++|+|+|+-.+++.... . +++..++.+.. ...++..||+.-++-
T Consensus 101 ~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~----~-----------------~~~~~~~~a~~~~~~~~~~~l~~~~~~ 159 (260)
T 2ozv_A 101 LRAKARVEAGLPDEHFHHVIMNPPYNDAGDR----R-----------------TPDALKAEAHAMTEGLFEDWIRTASAI 159 (260)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECCCC------------------------------------------CCHHHHHHHHHHH
T ss_pred HHhhhhhhhccCCCCcCEEEECCCCcCCCCC----C-----------------CcCHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 33 3678999999998655553200 0 01111111111 122477899999999
Q ss_pred hccCceeEEEec
Q 018250 204 LVPGGLMVFSLI 215 (359)
Q Consensus 204 L~pGG~lvl~~~ 215 (359)
|+|||+|++...
T Consensus 160 LkpgG~l~~~~~ 171 (260)
T 2ozv_A 160 MVSGGQLSLISR 171 (260)
T ss_dssp EEEEEEEEEEEC
T ss_pred cCCCCEEEEEEc
Confidence 999999999764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=71.45 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C-cccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R-KYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~-~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..++.++. . ..+|+..|+........-+.... . . +.-+.+++.+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~--v~~~~~d~~~ 115 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCL--------A---------GGRAITIEPRADRIENIQKNIDTYGLSPR--MRAVQGTAPA 115 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTCTTT--EEEEESCTTG
T ss_pred CCCEEEEecCCCCHHHHHHHH--------c---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCC--EEEEeCchhh
Confidence 357899999999999988852 1 24788888876554443332210 1 1 1112235544
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+.+..++|++++..++ +.. +|+.-.+-|+|||++++
T Consensus 116 ~~~~~~~~D~v~~~~~~------------------------------------------~~~-~l~~~~~~LkpgG~lv~ 152 (204)
T 3njr_A 116 ALADLPLPEAVFIGGGG------------------------------------------SQA-LYDRLWEWLAPGTRIVA 152 (204)
T ss_dssp GGTTSCCCSEEEECSCC------------------------------------------CHH-HHHHHHHHSCTTCEEEE
T ss_pred hcccCCCCCEEEECCcc------------------------------------------cHH-HHHHHHHhcCCCcEEEE
Confidence 34344578999875433 112 45566788999999999
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
...
T Consensus 153 ~~~ 155 (204)
T 3njr_A 153 NAV 155 (204)
T ss_dssp EEC
T ss_pred Eec
Confidence 875
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-05 Score=82.62 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=75.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC----C--Ccc-cccccCcc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP----P--RKY-YAAGVPGS 129 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~----~--~~~-~~~~vpgs 129 (359)
...+|||+|||+|..++.++ +.. .|..+|+..|+...+-...-+.+. . ... -+.-+-|+
T Consensus 721 ~g~rVLDVGCGTG~lai~LA--------r~g------~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD 786 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLL--------DYP------TSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS 786 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHT--------SSC------CCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHH--------HhC------CCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence 35799999999999998874 211 234689999998866655544221 0 000 11122346
Q ss_pred cccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 130 FHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 130 fy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
+.+..++++++|+|+++.++||+.. .+...||+.-.+-|+|| .
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~d------------------------------------p~l~~~L~eI~RvLKPG-~ 829 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEE------------------------------------DQACEFGEKVLSLFHPK-L 829 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTTCCS-E
T ss_pred hHhCCcccCCeeEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCC-E
Confidence 7666788899999999999999642 12335777888999999 8
Q ss_pred eEEEeccC
Q 018250 210 MVFSLITG 217 (359)
Q Consensus 210 lvl~~~g~ 217 (359)
++++.+..
T Consensus 830 LIISTPN~ 837 (950)
T 3htx_A 830 LIVSTPNY 837 (950)
T ss_dssp EEEEECBG
T ss_pred EEEEecCc
Confidence 88887644
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-06 Score=72.78 Aligned_cols=108 Identities=9% Similarity=-0.074 Sum_probs=64.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++ ++ +..+++..|+.......+-+.+..... -+.-+.+++.+.+
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~--------~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAV--------SR--------GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHH--------HT--------TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHH--------Hc--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence 34689999999999998774 21 234899999877555544333321100 0112234554422
Q ss_pred -CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH--HHhhccCceeE
Q 018250 135 -FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR--AEELVPGGLMV 211 (359)
Q Consensus 135 -~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R--a~EL~pGG~lv 211 (359)
..++++|+++++..+|+- ++..+++.- .+-|+|||+++
T Consensus 95 ~~~~~~fD~i~~~~~~~~~---------------------------------------~~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYAKE---------------------------------------TIVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp HHBCSCEEEEEECCSSHHH---------------------------------------HHHHHHHHHHHTTCEEEEEEEE
T ss_pred HhhcCCCCEEEECCCCCcc---------------------------------------hHHHHHHHHHhCCCcCCCcEEE
Confidence 234679999997554430 111122222 47899999999
Q ss_pred EEeccCCC
Q 018250 212 FSLITGPS 219 (359)
Q Consensus 212 l~~~g~~~ 219 (359)
+.......
T Consensus 136 ~~~~~~~~ 143 (177)
T 2esr_A 136 CETDKTVL 143 (177)
T ss_dssp EEEETTCC
T ss_pred EEECCccc
Confidence 99876654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.8e-06 Score=74.46 Aligned_cols=77 Identities=19% Similarity=0.057 Sum_probs=47.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc---cccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY---YAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~---~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.++ .+. ..+|+..|+.......+-+.+..... -+.-+.+++.+.+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~--------~~~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 117 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEAL--------SRQ--------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL 117 (201)
T ss_dssp TCEEEETTCTTCHHHHHHH--------HTT--------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred CCeEEEcCCccCHHHHHHH--------Hcc--------CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH
Confidence 3689999999999998764 111 13799999987666555443321000 1122234554433
Q ss_pred --CCCCc-eeEEEecCccc
Q 018250 135 --FPKST-LHVVNSFNAMH 150 (359)
Q Consensus 135 --~p~~s-~d~~~S~~alH 150 (359)
+++++ +|+|+++..+|
T Consensus 118 ~~~~~~~~fD~I~~~~~~~ 136 (201)
T 2ift_A 118 KQPQNQPHFDVVFLDPPFH 136 (201)
T ss_dssp TSCCSSCCEEEEEECCCSS
T ss_pred HhhccCCCCCEEEECCCCC
Confidence 24678 99999976654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-05 Score=75.50 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=71.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy 131 (359)
+++.+|||||||+|..+..++ +++ |..++...|+-.......-+.++. .+ -++.+-...|.
T Consensus 88 p~~~rVLdIG~G~G~la~~la--------~~~-------p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l 152 (317)
T 3gjy_A 88 ASKLRITHLGGGACTMARYFA--------DVY-------PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA 152 (317)
T ss_dssp GGGCEEEEESCGGGHHHHHHH--------HHS-------TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH
T ss_pred CCCCEEEEEECCcCHHHHHHH--------HHC-------CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH
Confidence 446799999999999888774 332 455788888876544433333331 11 12333222222
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.. ++++++|+|++....+| ..|..+.. ..|++.-++-|+|||+|+
T Consensus 153 ~~-~~~~~fDvIi~D~~~~~--~~~~~L~t--------------------------------~efl~~~~r~LkpgGvlv 197 (317)
T 3gjy_A 153 ES-FTPASRDVIIRDVFAGA--ITPQNFTT--------------------------------VEFFEHCHRGLAPGGLYV 197 (317)
T ss_dssp HT-CCTTCEEEEEECCSTTS--CCCGGGSB--------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred hh-ccCCCCCEEEECCCCcc--ccchhhhH--------------------------------HHHHHHHHHhcCCCcEEE
Confidence 22 46789999999877776 23332221 247888899999999999
Q ss_pred EEecc
Q 018250 212 FSLIT 216 (359)
Q Consensus 212 l~~~g 216 (359)
+....
T Consensus 198 ~~~~~ 202 (317)
T 3gjy_A 198 ANCGD 202 (317)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.6e-05 Score=72.84 Aligned_cols=98 Identities=6% Similarity=-0.042 Sum_probs=64.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+.++ +.. +. +|+..|+.......+-++... ..+ |+. ++..+
T Consensus 126 ~~~VLDlgcG~G~~~~~la--------~~~-------~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~---~D~~~ 186 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIA--------VYG-------KA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN---MDNRD 186 (278)
T ss_dssp TCEEEETTCTTTTTHHHHH--------HHT-------CC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC---SCTTT
T ss_pred CCEEEEecccCCHHHHHHH--------HhC-------CC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEE---CCHHH
Confidence 4789999999999999885 221 22 799999987665554443221 112 333 35544
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+ +++++|++++. .|... ..||..-.+-|+|||++++
T Consensus 187 ~~-~~~~fD~Vi~~--------~p~~~----------------------------------~~~l~~~~~~LkpgG~l~~ 223 (278)
T 2frn_A 187 FP-GENIADRILMG--------YVVRT----------------------------------HEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp CC-CCSCEEEEEEC--------CCSSG----------------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred hc-ccCCccEEEEC--------CchhH----------------------------------HHHHHHHHHHCCCCeEEEE
Confidence 33 37899999883 22111 1255566788999999999
Q ss_pred EeccC
Q 018250 213 SLITG 217 (359)
Q Consensus 213 ~~~g~ 217 (359)
.....
T Consensus 224 ~~~~~ 228 (278)
T 2frn_A 224 HNTVP 228 (278)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 88754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=76.32 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=72.5
Q ss_pred cchHHhhHHHHHHHHHH-HHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCC
Q 018250 18 CSYAHNSQFQRGTVDAA-KELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPD 96 (359)
Q Consensus 18 ~sY~~nS~~Q~~~~~~~-~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~ 96 (359)
.||+..+..+.-.-+.. ...-++||..+... + +.-+|||+|||+|..|+..+ +. . .
T Consensus 50 ~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~--~-----~~k~VLDvG~GtGiLs~~Aa--------~a-G-------A 106 (376)
T 4hc4_A 50 ECYSDVSVHEEMIADRVRTDAYRLGILRNWAA--L-----RGKTVLDVGAGTGILSIFCA--------QA-G-------A 106 (376)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHH--H-----TTCEEEEETCTTSHHHHHHH--------HT-T-------C
T ss_pred hhccCcHHHHHHhCCHHHHHHHHHHHHhCHHh--c-----CCCEEEEeCCCccHHHHHHH--------Hh-C-------C
Confidence 37877765444322222 12224555432211 1 23479999999998887663 21 1 1
Q ss_pred ceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceee
Q 018250 97 FQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKC 174 (359)
Q Consensus 97 ~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~ 174 (359)
-.||..|.. +.....-+.+..+ .--+.-+.|+..+--+| ..+|+++|-+--+.|-
T Consensus 107 ~~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~--------------------- 163 (376)
T 4hc4_A 107 RRVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLL--------------------- 163 (376)
T ss_dssp SEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBT---------------------
T ss_pred CEEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccccc---------------------
Confidence 378999964 3433222211111 00122233455343355 7899999932211111
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 175 TRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 175 ~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+..+..+|.+|.+-|+|||+|+-
T Consensus 164 --------------~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 164 --------------HESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp --------------TTCSHHHHHHHHHHHEEEEEEEES
T ss_pred --------------ccchhhhHHHHHHhhCCCCceECC
Confidence 012456689999999999999874
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.4e-05 Score=76.48 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=64.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh------------CCCCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT------------LPPRKYYAA 124 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~------------l~~~~~~~~ 124 (359)
...+|+|||||+|..++.++ ... +.-+++.-|+..+...-.-+. +.... +.
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA--------~~~-------g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r--Ve 235 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVA--------AAT-------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE--YT 235 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHC-------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE--EE
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHC-------CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC--eE
Confidence 45789999999999998885 221 122588888875433221111 10011 12
Q ss_pred ccCcccccCCCCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 125 GVPGSFHGRLFPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAE 202 (359)
Q Consensus 125 ~vpgsfy~~l~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 202 (359)
-+-|+|.+..+++ .++|+|+++..++| | |...-|....+
T Consensus 236 fi~GD~~~lp~~d~~~~aDVVf~Nn~~F~----p-----------------------------------dl~~aL~Ei~R 276 (438)
T 3uwp_A 236 LERGDFLSEEWRERIANTSVIFVNNFAFG----P-----------------------------------EVDHQLKERFA 276 (438)
T ss_dssp EEECCTTSHHHHHHHHTCSEEEECCTTCC----H-----------------------------------HHHHHHHHHHT
T ss_pred EEECcccCCccccccCCccEEEEcccccC----c-----------------------------------hHHHHHHHHHH
Confidence 2235666555544 47999999887766 2 23334556778
Q ss_pred hhccCceeEEEec
Q 018250 203 ELVPGGLMVFSLI 215 (359)
Q Consensus 203 EL~pGG~lvl~~~ 215 (359)
.|||||++|++=.
T Consensus 277 vLKPGGrIVssE~ 289 (438)
T 3uwp_A 277 NMKEGGRIVSSKP 289 (438)
T ss_dssp TSCTTCEEEESSC
T ss_pred cCCCCcEEEEeec
Confidence 9999999998743
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.9e-05 Score=71.91 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=65.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..++. .. .|..+++..|+........-+.+.. .. .+.-+.+++. .
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~--------~~------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~-~ 156 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLAN--------IV------GPEGRVVSYEIREDFAKLAWENIKWAGFDD-RVTIKLKDIY-E 156 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------HH------CTTSEEEEECSCHHHHHHHHHHHHHHTCTT-TEEEECSCGG-G
T ss_pred CCCEEEEecCCchHHHHHHHH--------Hh------CCCeEEEEEecCHHHHHHHHHHHHHcCCCC-ceEEEECchh-h
Confidence 457899999999999998852 21 2356899999976555444333211 11 0222234665 4
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+++++. |.. ..+|+.-.+-|+|||++++.
T Consensus 157 ~~~~~~~D~v~~~~--------~~~-----------------------------------~~~l~~~~~~L~~gG~l~~~ 193 (255)
T 3mb5_A 157 GIEEENVDHVILDL--------PQP-----------------------------------ERVVEHAAKALKPGGFFVAY 193 (255)
T ss_dssp CCCCCSEEEEEECS--------SCG-----------------------------------GGGHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCcCEEEECC--------CCH-----------------------------------HHHHHHHHHHcCCCCEEEEE
Confidence 48889999999832 211 02456667889999999987
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 194 ~~ 195 (255)
T 3mb5_A 194 TP 195 (255)
T ss_dssp ES
T ss_pred EC
Confidence 64
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.4e-07 Score=81.09 Aligned_cols=81 Identities=15% Similarity=-0.054 Sum_probs=53.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.+++ . ..+|+..|+.......+-+.+.... --+.-+-+++.+.+
T Consensus 79 ~~~vLD~gcG~G~~~~~la~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 140 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFAL--------T---------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA- 140 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-
T ss_pred CCEEEECccccCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-
Confidence 57899999999999998852 1 1488999988766555443332100 01112224554433
Q ss_pred CCCceeEEEecCcccccCCCC
Q 018250 136 PKSTLHVVNSFNAMHWLSKTP 156 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p 156 (359)
+++++|+|+++..+||.....
T Consensus 141 ~~~~~D~v~~~~~~~~~~~~~ 161 (241)
T 3gdh_A 141 SFLKADVVFLSPPWGGPDYAT 161 (241)
T ss_dssp GGCCCSEEEECCCCSSGGGGG
T ss_pred ccCCCCEEEECCCcCCcchhh
Confidence 778999999999999976544
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-05 Score=71.04 Aligned_cols=42 Identities=17% Similarity=-0.006 Sum_probs=29.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNT 111 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~ 111 (359)
...+|+|+|||+|..++.++..+ +. +..+|+..|+.......
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~------~~-------~~~~v~gvDis~~~l~~ 92 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLH------RR-------SLRQVIASDVDPAPLEL 92 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHT------GG-------GEEEEEEEESCHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHh------cc-------CCCeEEEEECCHHHHHH
Confidence 46899999999998888775321 01 23589999987654433
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=71.60 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=63.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc---hHHHHHhCCCCcccccccCccccc-
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND---FNTLFRTLPPRKYYAAGVPGSFHG- 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND---Fn~lf~~l~~~~~~~~~vpgsfy~- 132 (359)
...+|+|+|||+|..+..++ +.+ .|..+|+..|+.... .....+..+ +-.|.. +++.+
T Consensus 77 ~~~~vLDlG~G~G~~~~~la--------~~~------g~~~~v~gvD~s~~~i~~~~~~a~~~~-~v~~~~---~d~~~~ 138 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVS--------DIV------GPDGLVYAVEFSHRSGRDLINLAKKRT-NIIPVI---EDARHP 138 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHH--------HHH------CTTCEEEEECCCHHHHHHHHHHHHHCT-TEEEEC---SCTTCG
T ss_pred CCCEEEEEcccCCHHHHHHH--------HHh------CCCcEEEEEECCHHHHHHHHHHhhccC-CeEEEE---cccCCh
Confidence 35699999999999999885 332 133588999987543 222222221 111222 34433
Q ss_pred --CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 133 --RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 133 --~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..++++++|++++..+ .|. ....++..-.+-|+|||++
T Consensus 139 ~~~~~~~~~~D~V~~~~~------~~~----------------------------------~~~~~~~~~~~~LkpgG~l 178 (233)
T 2ipx_A 139 HKYRMLIAMVDVIFADVA------QPD----------------------------------QTRIVALNAHTFLRNGGHF 178 (233)
T ss_dssp GGGGGGCCCEEEEEECCC------CTT----------------------------------HHHHHHHHHHHHEEEEEEE
T ss_pred hhhcccCCcEEEEEEcCC------Ccc----------------------------------HHHHHHHHHHHHcCCCeEE
Confidence 2246789999999543 010 1223566668899999999
Q ss_pred EEEecc
Q 018250 211 VFSLIT 216 (359)
Q Consensus 211 vl~~~g 216 (359)
++.+..
T Consensus 179 ~i~~~~ 184 (233)
T 2ipx_A 179 VISIKA 184 (233)
T ss_dssp EEEEEH
T ss_pred EEEEcc
Confidence 997754
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=77.35 Aligned_cols=157 Identities=8% Similarity=-0.018 Sum_probs=65.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---------C-C--cccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---------P-R--KYYAAG 125 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---------~-~--~~~~~~ 125 (359)
..+|+|+|||+|..|+.++. .. .|..+|+..|+........-+.+. . . .--+.-
T Consensus 106 g~~VLDiG~G~G~~~~~la~--------~~------g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSK--------AV------GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHH--------HH------CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred CCEEEEeCCCcCHHHHHHHH--------Hh------CCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 46999999999999998852 22 134588888886543333222211 0 0 001122
Q ss_pred cCcccccC--CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 126 VPGSFHGR--LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 126 vpgsfy~~--l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
+.+++.+. -++++++|+|++...-+|. +|..-.+-
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~~~~~~-------------------------------------------~l~~~~~~ 208 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDMLNPHV-------------------------------------------TLPVFYPH 208 (336)
T ss_dssp EESCTTCCC-------EEEEEECSSSTTT-------------------------------------------THHHHGGG
T ss_pred EECChHHcccccCCCCeeEEEECCCCHHH-------------------------------------------HHHHHHHh
Confidence 23455444 3577899999985432221 34556789
Q ss_pred hccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcC--CCChhhhccCCccccC----CCHHHHHHHHHhCCc
Q 018250 204 LVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMG--VISEEKARTFNVPAYF----PYVEELESLIQRNGH 277 (359)
Q Consensus 204 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eG--li~~e~~d~f~~P~y~----ps~~E~~~~i~~~G~ 277 (359)
|+|||+|++..... +.+...+..|...+ ...+.........|.. +...++...++++|
T Consensus 209 LkpgG~lv~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~g~y~~~l~~aG- 272 (336)
T 2b25_A 209 LKHGGVCAVYVVNI---------------TQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKI- 272 (336)
T ss_dssp EEEEEEEEEEESSH---------------HHHHHHHHHHHHHTCCEEEEEEECCCCCCEEECC-----------------
T ss_pred cCCCcEEEEEeCCH---------------HHHHHHHHHHHhcCCCcccceEEEecccceEEEeecccccchhhhhcccc-
Confidence 99999999777421 12222333333211 1111111112222222 23348999999999
Q ss_pred eeEeEEEEee
Q 018250 278 FAMERMQQLD 287 (359)
Q Consensus 278 F~i~~le~~~ 287 (359)
|++.+++...
T Consensus 273 F~~v~~~~~~ 282 (336)
T 2b25_A 273 NTDVQLDSQE 282 (336)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9988877765
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=70.74 Aligned_cols=98 Identities=11% Similarity=0.005 Sum_probs=64.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.++ +. .|..+++..|........+-+.... .. +.-+.+++.+ +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~-~ 127 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLS--------IV-------RPEAHFTLLDSLGKRVRFLRQVQHELKLEN--IEPVQSRVEE-F 127 (207)
T ss_dssp SSEEEEETCTTTTTHHHHH--------HH-------CTTSEEEEEESCHHHHHHHHHHHHHTTCSS--EEEEECCTTT-S
T ss_pred CCeEEEECCCCCHHHHHHH--------HH-------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--eEEEecchhh-C
Confidence 4689999999999999884 22 2356899999876554443332211 11 2222345533 3
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.|++++|+++|+.. .++..+|+.-++-|+|||++++..
T Consensus 128 ~~~~~~D~i~~~~~------------------------------------------~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 128 PSEPPFDGVISRAF------------------------------------------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp CCCSCEEEEECSCS------------------------------------------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CccCCcCEEEEecc------------------------------------------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 36789999998421 023457777889999999999985
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 166 ~ 166 (207)
T 1jsx_A 166 G 166 (207)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.87 E-value=1e-05 Score=72.38 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=66.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc------ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK------YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~------~~~~~vpgsfy 131 (359)
..+|+|+|||+|..+..+. +.... ...|..+|+..|.........-+.+.... --+.-+.++..
T Consensus 81 ~~~VLdiG~G~G~~~~~la--------~~~~~--~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 150 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMA--------IKMNV--LENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY 150 (227)
T ss_dssp TCEEEEESCTTSHHHHHHH--------HHTTT--TTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred CCEEEEECCCCCHHHHHHH--------HHhcc--cCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence 4799999999999988774 22210 01245689999987654443333221100 00111223555
Q ss_pred cCC----CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 132 GRL----FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 132 ~~l----~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+.+ ++.+++|+|++..++|++ +. .-.+-|+||
T Consensus 151 ~~~~~~~~~~~~fD~I~~~~~~~~~---~~-----------------------------------------~~~~~Lkpg 186 (227)
T 2pbf_A 151 QVNEEEKKELGLFDAIHVGASASEL---PE-----------------------------------------ILVDLLAEN 186 (227)
T ss_dssp GCCHHHHHHHCCEEEEEECSBBSSC---CH-----------------------------------------HHHHHEEEE
T ss_pred hcccccCccCCCcCEEEECCchHHH---HH-----------------------------------------HHHHhcCCC
Confidence 544 556889999999998873 21 235679999
Q ss_pred ceeEEEecc
Q 018250 208 GLMVFSLIT 216 (359)
Q Consensus 208 G~lvl~~~g 216 (359)
|+|++.+..
T Consensus 187 G~lv~~~~~ 195 (227)
T 2pbf_A 187 GKLIIPIEE 195 (227)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEcc
Confidence 999999875
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=75.48 Aligned_cols=80 Identities=13% Similarity=-0.027 Sum_probs=51.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..++.++ +... ...+|+..|+........-+.+.. .. +.-+.+++.+.
T Consensus 75 ~~~~VLDiGcG~G~~~~~la--------~~~~------~~~~v~gvD~s~~~~~~a~~~~~~~g~~~--v~~~~~d~~~~ 138 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMS--------RVVG------EKGLVVSVEYSRKICEIAKRNVERLGIEN--VIFVCGDGYYG 138 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHH--------HHHC------TTCEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCGGGC
T ss_pred CcCEEEEecCCchHHHHHHH--------HhcC------CCCEEEEEECCHHHHHHHHHHHHHcCCCC--eEEEECChhhc
Confidence 35699999999999998875 2221 124789999876555443333211 11 12223455554
Q ss_pred CCCCCceeEEEecCccccc
Q 018250 134 LFPKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWL 152 (359)
+.+++++|+|+|..++|++
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~ 157 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEV 157 (317)
T ss_dssp CGGGCCEEEEEECSBBSCC
T ss_pred cccCCCeEEEEEcCCHHHH
Confidence 5567899999999999984
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.2e-05 Score=73.27 Aligned_cols=108 Identities=13% Similarity=-0.041 Sum_probs=64.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-------CCc-ccccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-------PRK-YYAAGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-------~~~-~~~~~vp 127 (359)
+.+.+|||+|||+|..+..++ +. .+..+++..|+........-+.++ ..+ -++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~--- 155 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVL--------RH-------GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV--- 155 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHH--------TC-------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE---
T ss_pred CCCCeEEEEcCCCCHHHHHHH--------hC-------CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE---
Confidence 345799999999999988774 11 234588888887654443333331 011 1222
Q ss_pred cccccCCC--CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018250 128 GSFHGRLF--PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV 205 (359)
Q Consensus 128 gsfy~~l~--p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 205 (359)
+++.+-+. +++++|+|++....++.. +..+. -..||+.-++-|+
T Consensus 156 ~D~~~~~~~~~~~~fDvIi~d~~~~~~~--~~~l~--------------------------------~~~~l~~~~~~Lk 201 (304)
T 3bwc_A 156 GDGLAFVRQTPDNTYDVVIIDTTDPAGP--ASKLF--------------------------------GEAFYKDVLRILK 201 (304)
T ss_dssp SCHHHHHHSSCTTCEEEEEEECC-----------C--------------------------------CHHHHHHHHHHEE
T ss_pred CcHHHHHHhccCCceeEEEECCCCcccc--chhhh--------------------------------HHHHHHHHHHhcC
Confidence 34433332 578999999987766521 11110 0247777889999
Q ss_pred cCceeEEEec
Q 018250 206 PGGLMVFSLI 215 (359)
Q Consensus 206 pGG~lvl~~~ 215 (359)
|||+|++...
T Consensus 202 pgG~lv~~~~ 211 (304)
T 3bwc_A 202 PDGICCNQGE 211 (304)
T ss_dssp EEEEEEEEEC
T ss_pred CCcEEEEecC
Confidence 9999999853
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.85 E-value=6.5e-05 Score=66.27 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=62.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL-- 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l-- 134 (359)
...+|+|+|||+|..|..+++ + ..+|+..|+.... .++ .-.++ -|++.+..
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~--------~---------~~~V~gvD~~~~~------~~~-~v~~~---~~D~~~~~~~ 77 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNS--------L---------ARKIISIDLQEME------EIA-GVRFI---RCDIFKETIF 77 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTT--------T---------CSEEEEEESSCCC------CCT-TCEEE---ECCTTSSSHH
T ss_pred CCCEEEEEeecCCHHHHHHHH--------c---------CCcEEEEeccccc------cCC-CeEEE---EccccCHHHH
Confidence 457999999999999988742 1 2478888886531 011 11122 23443321
Q ss_pred ------CC---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018250 135 ------FP---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV 205 (359)
Q Consensus 135 ------~p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 205 (359)
++ .+++|+|+|..+..+.-. ... .. ..........|+.-.+-|+
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~------------------------~~~-d~--~~~~~l~~~~l~~a~~~Lk 130 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGI------------------------PSR-DH--AVSYQIGQRVMEIAVRYLR 130 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSC------------------------HHH-HH--HHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCC------------------------ccc-CH--HHHHHHHHHHHHHHHHHcc
Confidence 22 148999999765433110 000 00 0112234566777789999
Q ss_pred cCceeEEEecc
Q 018250 206 PGGLMVFSLIT 216 (359)
Q Consensus 206 pGG~lvl~~~g 216 (359)
|||+|++..+.
T Consensus 131 pGG~lv~k~~~ 141 (191)
T 3dou_A 131 NGGNVLLKQFQ 141 (191)
T ss_dssp EEEEEEEEEEC
T ss_pred CCCEEEEEEcC
Confidence 99999998874
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=71.45 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=47.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCC-C
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRL-F 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l-~ 135 (359)
..+|+|+|||+|..++.++ .+. ..+|+..|+.......+-+.+..... -+.-+-+++.+.+ .
T Consensus 55 ~~~vLDlgcG~G~~~~~l~--------~~~--------~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 118 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEAL--------SRY--------AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ 118 (202)
T ss_dssp TCEEEETTCTTCHHHHHHH--------HTT--------CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS
T ss_pred CCeEEEeCCCcCHHHHHHH--------hcC--------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh
Confidence 3689999999999998764 111 12789999887666555443321100 0111223544422 3
Q ss_pred CCCceeEEEecCcccc
Q 018250 136 PKSTLHVVNSFNAMHW 151 (359)
Q Consensus 136 p~~s~d~~~S~~alHW 151 (359)
+++++|+|+++..+|+
T Consensus 119 ~~~~fD~V~~~~p~~~ 134 (202)
T 2fpo_A 119 KGTPHNIVFVDPPFRR 134 (202)
T ss_dssp CCCCEEEEEECCSSST
T ss_pred cCCCCCEEEECCCCCC
Confidence 6789999999766553
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.83 E-value=7.1e-06 Score=70.63 Aligned_cols=78 Identities=10% Similarity=-0.118 Sum_probs=46.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++ +. +..+|+..|+........-+.+..... -+.-+.+++.+.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~--------~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 107 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAV--------SR--------GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL 107 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred CCCCEEEeCCccCHHHHHHH--------Hc--------CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHH
Confidence 34699999999999998764 11 124899999876554443333211000 0111223544322
Q ss_pred ----CCCCceeEEEecCccc
Q 018250 135 ----FPKSTLHVVNSFNAMH 150 (359)
Q Consensus 135 ----~p~~s~d~~~S~~alH 150 (359)
++++++|+++++..+|
T Consensus 108 ~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 108 EQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHHHTTCCEEEEEECCCGG
T ss_pred HHHHhcCCCCCEEEECCCCC
Confidence 2378999999976655
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.9e-05 Score=70.56 Aligned_cols=79 Identities=13% Similarity=-0.035 Sum_probs=48.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--------CcccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--------RKYYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--------~~~~~~~vpg 128 (359)
...+|+|+|||+|..|..++ +.+ .+..+|+..|+........-+.+.. .. +..+-+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la--------~~~------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~--v~~~~~ 140 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFA--------RMV------GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR--VQLVVG 140 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHH------CTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS--EEEEES
T ss_pred CCCEEEEEcCCcCHHHHHHH--------HHh------CCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCc--EEEEEC
Confidence 35799999999999998874 222 1235888899876544433322211 01 111123
Q ss_pred ccccCCCCCCceeEEEecCcccc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHW 151 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHW 151 (359)
+......+++++|+|++...++.
T Consensus 141 d~~~~~~~~~~fD~i~~~~~~~~ 163 (226)
T 1i1n_A 141 DGRMGYAEEAPYDAIHVGAAAPV 163 (226)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSS
T ss_pred CcccCcccCCCcCEEEECCchHH
Confidence 44444445788999999887754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.8e-05 Score=70.85 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=65.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC----cccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR----KYYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~----~~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|..+..++ +.. .|..+++..|+........-+.+... .--+.-+.+++.+.
T Consensus 100 ~~~vLdiG~G~G~~~~~l~--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLL--------RAV------GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp TCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred CCEEEEEcccccHHHHHHH--------HHh------CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 4689999999999998885 221 13468999998765444333322100 00122233566666
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.++++++|++++...-.| .+|+.-.+-|+|||++++.
T Consensus 166 ~~~~~~~D~v~~~~~~~~-------------------------------------------~~l~~~~~~L~pgG~l~~~ 202 (280)
T 1i9g_A 166 ELPDGSVDRAVLDMLAPW-------------------------------------------EVLDAVSRLLVAGGVLMVY 202 (280)
T ss_dssp CCCTTCEEEEEEESSCGG-------------------------------------------GGHHHHHHHEEEEEEEEEE
T ss_pred CCCCCceeEEEECCcCHH-------------------------------------------HHHHHHHHhCCCCCEEEEE
Confidence 678899999998322111 1466667889999999998
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 203 ~~ 204 (280)
T 1i9g_A 203 VA 204 (280)
T ss_dssp ES
T ss_pred eC
Confidence 85
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-05 Score=74.07 Aligned_cols=98 Identities=9% Similarity=-0.032 Sum_probs=64.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy 131 (359)
....+|||+|||+|+.|..++. + .+..+|+.-|+....-...-+.+.. +--|+. |++.
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA--------~-------~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~---gDa~ 182 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLS--------H-------VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVIT---GDET 182 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHH--------H-------TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEE---SCGG
T ss_pred CCcCEEEEECCCccHHHHHHHH--------H-------ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEE---Cchh
Confidence 3468999999999998866641 2 1346899999877554433322211 112333 3444
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+ +|++++|+|++... +| |...+|+.-.+-|+|||+|+
T Consensus 183 ~--l~d~~FDvV~~~a~------~~-----------------------------------d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 183 V--IDGLEFDVLMVAAL------AE-----------------------------------PKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp G--GGGCCCSEEEECTT------CS-----------------------------------CHHHHHHHHHHHCCTTCEEE
T ss_pred h--CCCCCcCEEEECCC------cc-----------------------------------CHHHHHHHHHHHcCCCcEEE
Confidence 4 46899999998543 11 23347777889999999999
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+..
T Consensus 220 v~~ 222 (298)
T 3fpf_A 220 YRT 222 (298)
T ss_dssp EEE
T ss_pred EEc
Confidence 876
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=71.94 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=46.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..+..++ +.. + .+++..|.........-+.+.. .. +.-+.+++ ...
T Consensus 92 ~~~vLdiG~G~G~~~~~la--------~~~-------~-~~v~~vD~~~~~~~~a~~~~~~~~~~~--v~~~~~d~-~~~ 152 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALIS--------EIV-------K-TDVYTIERIPELVEFAKRNLERAGVKN--VHVILGDG-SKG 152 (235)
T ss_dssp TCCEEEECCTTSHHHHHHH--------HHH-------C-SCEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCG-GGC
T ss_pred CCEEEEEeCCcCHHHHHHH--------HHh-------C-CEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEECCc-ccC
Confidence 4689999999999998875 222 1 3778888765443333222211 11 11122354 334
Q ss_pred CCCC-ceeEEEecCccccc
Q 018250 135 FPKS-TLHVVNSFNAMHWL 152 (359)
Q Consensus 135 ~p~~-s~d~~~S~~alHWL 152 (359)
+|++ .+|+|+++.++|++
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~ 171 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKI 171 (235)
T ss_dssp CGGGCCEEEEEECSBBSSC
T ss_pred CCCCCCccEEEECCcHHHH
Confidence 5544 49999999998874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.80 E-value=6.6e-05 Score=67.09 Aligned_cols=102 Identities=11% Similarity=-0.011 Sum_probs=61.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccC-
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGR- 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~- 133 (359)
...+|+|+|||+|..++.++ +++. |..+|+..|........+.+.... +-.++. +++...
T Consensus 73 ~~~~vLDlG~G~G~~~~~la--------~~~~------~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~---~d~~~~~ 135 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVS--------DIVG------WEGKIFGIEFSPRVLRELVPIVEERRNIVPIL---GDATKPE 135 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHH--------HHHC------TTSEEEEEESCHHHHHHHHHHHSSCTTEEEEE---CCTTCGG
T ss_pred CCCEEEEEeccCCHHHHHHH--------HHhC------CCeEEEEEECCHHHHHHHHHHHhccCCCEEEE---ccCCCcc
Confidence 35699999999999999885 2321 234788888876544443333221 111222 344331
Q ss_pred --CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 134 --LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 134 --l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
...++++|++++.....| ....+|+.-.+-|+|||+++
T Consensus 136 ~~~~~~~~~D~v~~~~~~~~----------------------------------------~~~~~l~~~~~~LkpgG~l~ 175 (227)
T 1g8a_A 136 EYRALVPKVDVIFEDVAQPT----------------------------------------QAKILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp GGTTTCCCEEEEEECCCSTT----------------------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred hhhcccCCceEEEECCCCHh----------------------------------------HHHHHHHHHHHhcCCCCEEE
Confidence 112468999997543110 11234666788999999999
Q ss_pred EEec
Q 018250 212 FSLI 215 (359)
Q Consensus 212 l~~~ 215 (359)
+.+.
T Consensus 176 ~~~~ 179 (227)
T 1g8a_A 176 IAVK 179 (227)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9943
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=97.78 E-value=9.8e-06 Score=72.54 Aligned_cols=103 Identities=13% Similarity=0.042 Sum_probs=64.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~ 132 (359)
+.+|+|+|||+|..|+.++ +.+ .+..+|+..|+........-+.+.. .. -++. |++.+
T Consensus 59 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~ 121 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMA--------RLL------QPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILN---GASQD 121 (221)
T ss_dssp CSEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHH
T ss_pred CCEEEEECCCCCHHHHHHH--------HhC------CCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEE---CCHHH
Confidence 5789999999999999885 221 1356899999977555444333221 11 1222 34332
Q ss_pred CC--CC----CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 133 RL--FP----KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 133 ~l--~p----~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
.+ ++ .+++|+|++....|+.. +...++... +-|+|
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~--------------------------------------~~~~~~~~~-~~Lkp 162 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRYL--------------------------------------PDTLLLEKC-GLLRK 162 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGHH--------------------------------------HHHHHHHHT-TCCCT
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccch--------------------------------------HHHHHHHhc-cccCC
Confidence 11 22 37899999876655521 222355555 88999
Q ss_pred CceeEEEecc
Q 018250 207 GGLMVFSLIT 216 (359)
Q Consensus 207 GG~lvl~~~g 216 (359)
||++++....
T Consensus 163 gG~lv~~~~~ 172 (221)
T 3u81_A 163 GTVLLADNVI 172 (221)
T ss_dssp TCEEEESCCC
T ss_pred CeEEEEeCCC
Confidence 9999986654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.9e-05 Score=69.63 Aligned_cols=85 Identities=15% Similarity=0.019 Sum_probs=49.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-----c-cccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-----Y-YAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-----~-~~~~vpgsfy 131 (359)
..+|+|+|||+|..|..+.. ..... ...+..+|+..|.........-+.+.... . -+.-+.++..
T Consensus 85 ~~~VLdiG~G~G~~~~~la~--------~~~~~-~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 155 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYR--------YIKAK-GVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR 155 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHH--------HHHHS-CCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG
T ss_pred CCEEEEECCCccHHHHHHHH--------hcccc-cCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcc
Confidence 46999999999999998852 22110 01123488888987644433322221000 0 0111223554
Q ss_pred cCCCCC-CceeEEEecCccccc
Q 018250 132 GRLFPK-STLHVVNSFNAMHWL 152 (359)
Q Consensus 132 ~~l~p~-~s~d~~~S~~alHWL 152 (359)
. .+|+ +++|+|++..++||+
T Consensus 156 ~-~~~~~~~fD~I~~~~~~~~~ 176 (227)
T 1r18_A 156 K-GYPPNAPYNAIHVGAAAPDT 176 (227)
T ss_dssp G-CCGGGCSEEEEEECSCBSSC
T ss_pred c-CCCcCCCccEEEECCchHHH
Confidence 4 4555 899999999999884
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.5e-05 Score=72.73 Aligned_cols=79 Identities=6% Similarity=-0.077 Sum_probs=47.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C-cccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R-KYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~-~~~~~~vpgsfy 131 (359)
...+|+|+|||+|..++.++. +. |..+|+..|+........-+.+.. . --++.+ +..
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~ 126 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGA--------TL-------NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKV---PQK 126 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHH--------HH-------HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CTT
T ss_pred CCCEEEEeCCChhHHHHHHHH--------hC-------CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEc---chh
Confidence 356999999999999988752 22 135888999877665544333211 1 123332 322
Q ss_pred c---CCCC---CCceeEEEecCcccccC
Q 018250 132 G---RLFP---KSTLHVVNSFNAMHWLS 153 (359)
Q Consensus 132 ~---~l~p---~~s~d~~~S~~alHWLs 153 (359)
+ ..++ ++++|+|+|+-.+|+..
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQ 154 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC---
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCc
Confidence 2 1244 36899999987777643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=97.74 E-value=3.5e-05 Score=74.33 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=44.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++ +. +..+|+..|+.. +....-+.+.... --+.-+.+++.+..
T Consensus 50 ~~~~VLDiGcGtG~ls~~la--------~~--------g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~ 112 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAA--------QA--------GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS 112 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred CcCEEEEcCCCccHHHHHHH--------hC--------CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC
Confidence 34699999999999988774 21 234899999863 4332222211000 00122234554433
Q ss_pred CCCCceeEEEecCccc
Q 018250 135 FPKSTLHVVNSFNAMH 150 (359)
Q Consensus 135 ~p~~s~d~~~S~~alH 150 (359)
+| +++|+|+|...++
T Consensus 113 ~~-~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 113 LP-EQVDIIISEPMGY 127 (348)
T ss_dssp CS-SCEEEEEECCCBT
T ss_pred CC-CceeEEEEeCchh
Confidence 44 6899999987654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.70 E-value=2e-05 Score=71.16 Aligned_cols=103 Identities=9% Similarity=0.019 Sum_probs=64.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|+.++ +.+ .+..+|+..|+........-+.+.. ..--+.-+.|+..+-+
T Consensus 57 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYIL--------NGL------ADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp CCEEEEESTTHHHHHHHHH--------HHS------CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred CCCEEEEcCCchHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 3589999999999999885 332 2356899999987655444333221 1001122234444333
Q ss_pred --CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 135 --FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 135 --~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
++++++|+||+.... .++..||+.-.+-|+|||++++
T Consensus 123 ~~~~~~~fD~V~~d~~~-----------------------------------------~~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 123 SRLANDSYQLVFGQVSP-----------------------------------------MDLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp GGSCTTCEEEEEECCCT-----------------------------------------TTHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhcCCCcCeEEEcCcH-----------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence 347899999975311 0223466677789999999998
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
...
T Consensus 162 dn~ 164 (221)
T 3dr5_A 162 ADA 164 (221)
T ss_dssp TTT
T ss_pred eCC
Confidence 543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=72.95 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=59.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHH-------HHhC---C--CCcc-cc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTL-------FRTL---P--PRKY-YA 123 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l-------f~~l---~--~~~~-~~ 123 (359)
...+|+|+|||+|..++.++. .+ +..+|+.-|+........ -+.+ . ...+ ++
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~--------~~-------g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAAL--------EC-------GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHH--------HH-------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHH--------HC-------CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 457999999999999998852 22 123677777766443322 1111 1 0011 22
Q ss_pred cccCcccccC-CC--CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018250 124 AGVPGSFHGR-LF--PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR 200 (359)
Q Consensus 124 ~~vpgsfy~~-l~--p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R 200 (359)
.+ +++... .| +.+++|+|+++.++++ | |+...|+..
T Consensus 307 ~g--D~~~~~~~~~~~~~~FDvIvvn~~l~~----~-----------------------------------d~~~~L~el 345 (433)
T 1u2z_A 307 LK--KSFVDNNRVAELIPQCDVILVNNFLFD----E-----------------------------------DLNKKVEKI 345 (433)
T ss_dssp ES--SCSTTCHHHHHHGGGCSEEEECCTTCC----H-----------------------------------HHHHHHHHH
T ss_pred Ec--CccccccccccccCCCCEEEEeCcccc----c-----------------------------------cHHHHHHHH
Confidence 11 122111 01 2468999999876632 1 334466677
Q ss_pred HHhhccCceeEEE
Q 018250 201 AEELVPGGLMVFS 213 (359)
Q Consensus 201 a~EL~pGG~lvl~ 213 (359)
.+.|+|||+|++.
T Consensus 346 ~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 346 LQTAKVGCKIISL 358 (433)
T ss_dssp HTTCCTTCEEEES
T ss_pred HHhCCCCeEEEEe
Confidence 8899999999987
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.68 E-value=7e-05 Score=69.32 Aligned_cols=100 Identities=15% Similarity=0.033 Sum_probs=63.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.++ +.. .|..+++..|+........-+.+.... --+.-+.+++.+. +
T Consensus 113 ~~~VLDiG~G~G~~~~~la--------~~~------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 177 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLA--------RAV------GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F 177 (277)
T ss_dssp TCEEEEECCTTSHHHHHHH--------HHT------TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C
T ss_pred CCEEEEECCcCCHHHHHHH--------HHh------CCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c
Confidence 4699999999999998874 221 134689999987655444333321100 0122233466544 7
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+++++ .|.. ..+|+.-.+-|+|||++++...
T Consensus 178 ~~~~~D~V~~~--------~~~~-----------------------------------~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 178 DEKDVDALFLD--------VPDP-----------------------------------WNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SCCSEEEEEEC--------CSCG-----------------------------------GGTHHHHHHHEEEEEEEEEEES
T ss_pred cCCccCEEEEC--------CcCH-----------------------------------HHHHHHHHHHcCCCCEEEEEeC
Confidence 88899999983 1211 0245566788999999999874
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.67 E-value=6.3e-05 Score=69.73 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=64.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC-c-ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR-K-YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~-~-~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++. .. .|..+++..|+........-+.+... . --+.-+.+++.+ .
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~--------~~------~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~ 174 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILY--------AL------NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-F 174 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------HH------TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-C
T ss_pred CcCEEEEecCCCCHHHHHHHH--------Hc------CCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-c
Confidence 357999999999999988852 21 13468999998765544333322111 0 001122346644 6
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++++|++++ | +|.. ..+|+.-.+-|+|||++++..
T Consensus 175 ~~~~~fD~Vi~----~----~~~~-----------------------------------~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 175 ISDQMYDAVIA----D----IPDP-----------------------------------WNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp CCSCCEEEEEE----C----CSCG-----------------------------------GGSHHHHHHTEEEEEEEEEEE
T ss_pred CcCCCccEEEE----c----CcCH-----------------------------------HHHHHHHHHHcCCCCEEEEEe
Confidence 78889999998 2 2211 025666778899999999987
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 212 ~ 212 (275)
T 1yb2_A 212 P 212 (275)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.4e-05 Score=72.35 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=63.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+.++ +. .|..+|+..|+........-+.+.. .. -|+. +++.+
T Consensus 72 ~~~vLDiG~G~G~~~~~la--------~~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~ 133 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFA--------SI-------SDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIE---GNALE 133 (232)
T ss_dssp CCEEEEECCSSSHHHHHHH--------TT-------CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCGGG
T ss_pred CCEEEEEeCchhHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---CCHHH
Confidence 5799999999999999884 21 2456899999876554444333211 11 1333 34433
Q ss_pred CCCC---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 133 RLFP---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 133 ~l~p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
. +| ++++|+|++... .. ++..||+.-.+-|+|||+
T Consensus 134 ~-~~~~~~~~fD~V~~~~~---~~--------------------------------------~~~~~l~~~~~~LkpgG~ 171 (232)
T 3ntv_A 134 Q-FENVNDKVYDMIFIDAA---KA--------------------------------------QSKKFFEIYTPLLKHQGL 171 (232)
T ss_dssp C-HHHHTTSCEEEEEEETT---SS--------------------------------------SHHHHHHHHGGGEEEEEE
T ss_pred H-HHhhccCCccEEEEcCc---HH--------------------------------------HHHHHHHHHHHhcCCCeE
Confidence 2 23 689999996521 10 233477777899999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
+++...
T Consensus 172 lv~d~~ 177 (232)
T 3ntv_A 172 VITDNV 177 (232)
T ss_dssp EEEECT
T ss_pred EEEeeC
Confidence 988443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.66 E-value=1.6e-05 Score=67.23 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=61.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC--C
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL--F 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l--~ 135 (359)
..+|+|+|||+|..++.++ +. .+ .++..|+.......+-+.......-+.-+.+++.+.+ +
T Consensus 42 ~~~vLD~GcG~G~~~~~l~--------~~-------~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAA--------SE-------GW--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEA 104 (171)
T ss_dssp CCEEEEETCSSCHHHHHHH--------HT-------TC--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHH
T ss_pred CCeEEEeCCCcCHHHHHHH--------HC-------CC--eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhh
Confidence 4689999999999998874 22 12 3888888765544433322210000111123443311 1
Q ss_pred C--CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 136 P--KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 136 p--~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+ ++++|+++++..+| ...+. + +..+.+ .+-|+|||+++++
T Consensus 105 ~~~~~~~D~i~~~~~~~--~~~~~-----------------------~-----------~~~~~~--~~~L~~gG~~~~~ 146 (171)
T 1ws6_A 105 KAQGERFTVAFMAPPYA--MDLAA-----------------------L-----------FGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp HHTTCCEEEEEECCCTT--SCTTH-----------------------H-----------HHHHHH--HTCEEEEEEEEEE
T ss_pred hccCCceEEEEECCCCc--hhHHH-----------------------H-----------HHHHHh--hcccCCCcEEEEE
Confidence 1 34899999987766 21111 0 111221 5789999999999
Q ss_pred eccCCC
Q 018250 214 LITGPS 219 (359)
Q Consensus 214 ~~g~~~ 219 (359)
+.....
T Consensus 147 ~~~~~~ 152 (171)
T 1ws6_A 147 HPKDLY 152 (171)
T ss_dssp EETTSC
T ss_pred eCCccC
Confidence 876554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.8e-05 Score=69.18 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=62.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--Ccc--ccccc--Cccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKY--YAAGV--PGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~--~~~~v--pgsf 130 (359)
...+|+|+|||+|..|..+++. .+|+..|+.. +-.. .+..+. +.+ =+.-+ -+++
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~------------------~~V~gVD~s~-m~~~-a~~~~~~~~~~~~~v~~~~~~~D~ 141 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ------------------PNVREVKAYT-LGTS-GHEKPRLVETFGWNLITFKSKVDV 141 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS------------------TTEEEEEEEC-CCCT-TSCCCCCCCCTTGGGEEEECSCCG
T ss_pred CCCEEEEeccCCCHHHHHHHHc------------------CCEEEEECch-hhhh-hhhchhhhhhcCCCeEEEeccCcH
Confidence 3579999999999999877421 2677777765 3110 000010 000 01112 3455
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG-- 208 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG-- 208 (359)
.. +|++++|+|+|..+ ++... |. .+ +. +.+ .+|+...+-|+|||
T Consensus 142 ~~--l~~~~fD~Vvsd~~-~~~~~-~~--~d--------------------------~~-~~l-~~L~~~~r~LkpGG~~ 187 (276)
T 2wa2_A 142 TK--MEPFQADTVLCDIG-ESNPT-AA--VE--------------------------AS-RTL-TVLNVISRWLEYNQGC 187 (276)
T ss_dssp GG--CCCCCCSEEEECCC-CCCSC-HH--HH--------------------------HH-HHH-HHHHHHHHHHHHSTTC
T ss_pred hh--CCCCCcCEEEECCC-cCCCc-hh--hh--------------------------HH-HHH-HHHHHHHHHhccCCCc
Confidence 44 57899999999887 55221 10 00 00 011 16677778899999
Q ss_pred eeEEEecc
Q 018250 209 LMVFSLIT 216 (359)
Q Consensus 209 ~lvl~~~g 216 (359)
.|++..+.
T Consensus 188 ~~v~~~~~ 195 (276)
T 2wa2_A 188 GFCVKVLN 195 (276)
T ss_dssp EEEEEESC
T ss_pred EEEEEeCC
Confidence 99998776
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.65 E-value=9.7e-05 Score=67.22 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=64.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC-----------C-CCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL-----------P-PRKYYAA 124 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l-----------~-~~~~~~~ 124 (359)
...+|+|+|||+|..++.++ +. .|...++..|........+-+.+ . .+--++.
T Consensus 49 ~~~~vLDiGcG~G~~~~~la--------~~-------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~ 113 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLS--------PA-------FPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLR 113 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHH--------HH-------STTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHH--------Hh-------CCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEe
Confidence 35789999999999999885 22 24567888888765443332211 0 0111222
Q ss_pred ccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018250 125 GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL 204 (359)
Q Consensus 125 ~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 204 (359)
+-.-.+....++++++|.++....--|.... .. +.++. -..||+.-++-|
T Consensus 114 ~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~----~~-------~~r~~-------------------~~~~l~~~~~~L 163 (246)
T 2vdv_E 114 GNAMKFLPNFFEKGQLSKMFFCFPDPHFKQR----KH-------KARII-------------------TNTLLSEYAYVL 163 (246)
T ss_dssp CCTTSCGGGTSCTTCEEEEEEESCCCC-----------------CSSCC-------------------CHHHHHHHHHHE
T ss_pred ccHHHHHHHhccccccCEEEEECCCcccccc----hh-------HHhhc-------------------cHHHHHHHHHHc
Confidence 2222223345788999999865433331110 00 00000 024777778999
Q ss_pred ccCceeEEEe
Q 018250 205 VPGGLMVFSL 214 (359)
Q Consensus 205 ~pGG~lvl~~ 214 (359)
+|||+|++.+
T Consensus 164 kpgG~l~~~t 173 (246)
T 2vdv_E 164 KEGGVVYTIT 173 (246)
T ss_dssp EEEEEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999999965
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.7e-05 Score=70.53 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=63.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCC-CCchHHHHHhC-----CCC--------cc-c
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHT-ENDFNTLFRTL-----PPR--------KY-Y 122 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp-~NDFn~lf~~l-----~~~--------~~-~ 122 (359)
..+|+|+|||+|..++.++ +. ...+|+..|++ ...-..+-++. ... .+ +
T Consensus 80 ~~~vLDlG~G~G~~~~~~a--------~~--------~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAF--------LA--------GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp TCEEEETTCTTSHHHHHHH--------HT--------TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred CCeEEEecccccHHHHHHH--------Hc--------CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 4689999999999988763 21 11389999994 33333222222 110 11 1
Q ss_pred ccccCcccccCCC---CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 018250 123 AAGVPGSFHGRLF---PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNA 199 (359)
Q Consensus 123 ~~~vpgsfy~~l~---p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~ 199 (359)
....-|+....+. +++++|+|+++.++++.. +...+|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~--------------------------------------~~~~ll~~ 185 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ--------------------------------------AHDALLRS 185 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG--------------------------------------GHHHHHHH
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCcccChH--------------------------------------HHHHHHHH
Confidence 1111112112222 578999999988888832 23346677
Q ss_pred HHHhhc---c--CceeEEEeccC
Q 018250 200 RAEELV---P--GGLMVFSLITG 217 (359)
Q Consensus 200 Ra~EL~---p--GG~lvl~~~g~ 217 (359)
-.+-|+ | ||++++.+..+
T Consensus 186 l~~~Lk~~~p~~gG~l~v~~~~~ 208 (281)
T 3bzb_A 186 VKMLLALPANDPTAVALVTFTHH 208 (281)
T ss_dssp HHHHBCCTTTCTTCEEEEEECC-
T ss_pred HHHHhcccCCCCCCEEEEEEEee
Confidence 778899 9 99998877544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00028 Score=66.65 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=62.6
Q ss_pred cceEEEeecCCCCccc----HHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNT----FISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt----~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|.+. ..+ .+.. .+..+|+..|+... ++ +--|. +-|++.+
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs~~~--------a~~~------~~~~~V~gvDis~~--------v~-~v~~~--i~gD~~~ 117 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGTAVL--------RQWL------PTGTLLVDSDLNDF--------VS-DADST--LIGDCAT 117 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHH--------HHHS------CTTCEEEEEESSCC--------BC-SSSEE--EESCGGG
T ss_pred CCCEEEEeCCCCCCCCCcHHHHH--------HHHc------CCCCEEEEEECCCC--------CC-CCEEE--EECcccc
Confidence 3578999999774443 222 2332 12468999999764 22 11230 2346655
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..++ +++|+|+|+.+.+|..... .+.. . ....+...|+.-.+-|+|||+|++
T Consensus 118 ~~~~-~~fD~Vvsn~~~~~~g~~~---~d~~-----~-------------------~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 118 VHTA-NKWDLIISDMYDPRTKHVT---KEND-----S-------------------KEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp CCCS-SCEEEEEECCCCCC---CC---SCCC-----C-------------------CCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCcc-CcccEEEEcCCcccccccc---cccc-----c-------------------hHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4444 7899999987655521110 0000 0 011345677778899999999999
Q ss_pred EeccC
Q 018250 213 SLITG 217 (359)
Q Consensus 213 ~~~g~ 217 (359)
..+..
T Consensus 170 ~~~~~ 174 (290)
T 2xyq_A 170 KITEH 174 (290)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 76543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=4.5e-05 Score=72.63 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=67.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--------CCc-ccccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--------PRK-YYAAGVP 127 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--------~~~-~~~~~vp 127 (359)
.+.+|+|+|||+|..+..++ +. .+..+++..|+-.......-+.++ ..+ -++.
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~--- 138 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVL--------KH-------PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI--- 138 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHT--------TS-------TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE---
T ss_pred CCCeEEEEcCCcCHHHHHHH--------hc-------CCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEE---
Confidence 45799999999999988774 11 234578888887644433322221 111 1222
Q ss_pred cccccCC-CCCCceeEEEecCcccc-cCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018250 128 GSFHGRL-FPKSTLHVVNSFNAMHW-LSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV 205 (359)
Q Consensus 128 gsfy~~l-~p~~s~d~~~S~~alHW-Ls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 205 (359)
++..+-+ .+++++|+|++....|| ++..+..+. ...|++.-++-|+
T Consensus 139 ~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~--------------------------------~~~~l~~~~~~Lk 186 (314)
T 1uir_A 139 DDARAYLERTEERYDVVIIDLTDPVGEDNPARLLY--------------------------------TVEFYRLVKAHLN 186 (314)
T ss_dssp SCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGS--------------------------------SHHHHHHHHHTEE
T ss_pred chHHHHHHhcCCCccEEEECCCCcccccCcchhcc--------------------------------HHHHHHHHHHhcC
Confidence 2332212 24789999999988887 221111110 1347778889999
Q ss_pred cCceeEEEecc
Q 018250 206 PGGLMVFSLIT 216 (359)
Q Consensus 206 pGG~lvl~~~g 216 (359)
|||+|++....
T Consensus 187 pgG~lv~~~~~ 197 (314)
T 1uir_A 187 PGGVMGMQTGM 197 (314)
T ss_dssp EEEEEEEEEEE
T ss_pred CCcEEEEEccC
Confidence 99999998644
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.8e-05 Score=67.85 Aligned_cols=102 Identities=13% Similarity=0.165 Sum_probs=63.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l- 134 (359)
..+|+|+|||+|..++.++ +.+ |..+|+..|.........-+.+.... --+..+.+++.+.+
T Consensus 55 ~~~vLdiG~G~G~~~~~la--------~~~-------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 119 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMA--------QAL-------PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE 119 (233)
T ss_dssp CSEEEEECCTTSHHHHHHH--------HHC-------TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH
T ss_pred CCEEEEecCCCcHHHHHHH--------HHC-------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence 4699999999999998885 232 34689999987654443333221100 00111223443322
Q ss_pred C--CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 135 F--PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 135 ~--p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
. .++++|+|++....+ ++..+|+.-.+-|+|||++++
T Consensus 120 ~~~~~~~fD~I~~~~~~~-----------------------------------------~~~~~l~~~~~~L~pgG~lv~ 158 (233)
T 2gpy_A 120 KLELYPLFDVLFIDAAKG-----------------------------------------QYRRFFDMYSPMVRPGGLILS 158 (233)
T ss_dssp HHTTSCCEEEEEEEGGGS-----------------------------------------CHHHHHHHHGGGEEEEEEEEE
T ss_pred hcccCCCccEEEECCCHH-----------------------------------------HHHHHHHHHHHHcCCCeEEEE
Confidence 1 157899999854432 233577777899999999999
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
...
T Consensus 159 ~~~ 161 (233)
T 2gpy_A 159 DNV 161 (233)
T ss_dssp ETT
T ss_pred EcC
Confidence 743
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=67.31 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=61.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--Ccc--ccccc--Cccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKY--YAAGV--PGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~--~~~~v--pgsf 130 (359)
...+|+|+|||+|..|..+++. .+|+..|+.. +-.. .+..+. +.+ =+.-+ -+++
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~------------------~~V~gvD~s~-m~~~-a~~~~~~~~~~~~~v~~~~~~~D~ 133 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR------------------PHVMDVRAYT-LGVG-GHEVPRITESYGWNIVKFKSRVDI 133 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS------------------TTEEEEEEEC-CCCS-SCCCCCCCCBTTGGGEEEECSCCT
T ss_pred CCCEEEEeCcCCCHHHHHHHHc------------------CcEEEEECch-hhhh-hhhhhhhhhccCCCeEEEecccCH
Confidence 3579999999999999877421 2677777755 2100 000010 000 01112 3455
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG-- 208 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG-- 208 (359)
.. +|++++|+|+|..+ +.... | ..+ +. +.+ ..|+...+-|+|||
T Consensus 134 ~~--l~~~~fD~V~sd~~-~~~~~-~--~~d--------------------------~~-~~l-~~L~~~~r~LkpGG~~ 179 (265)
T 2oxt_A 134 HT--LPVERTDVIMCDVG-ESSPK-W--SVE--------------------------SE-RTI-KILELLEKWKVKNPSA 179 (265)
T ss_dssp TT--SCCCCCSEEEECCC-CCCSC-H--HHH--------------------------HH-HHH-HHHHHHHHHHHHCTTC
T ss_pred hH--CCCCCCcEEEEeCc-ccCCc-c--chh--------------------------HH-HHH-HHHHHHHHHhccCCCe
Confidence 44 57889999999877 55211 1 000 00 011 16777778999999
Q ss_pred eeEEEecc
Q 018250 209 LMVFSLIT 216 (359)
Q Consensus 209 ~lvl~~~g 216 (359)
.|++..+.
T Consensus 180 ~fv~kv~~ 187 (265)
T 2oxt_A 180 DFVVKVLC 187 (265)
T ss_dssp EEEEEESC
T ss_pred EEEEEeCC
Confidence 99998776
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=69.71 Aligned_cols=124 Identities=17% Similarity=0.078 Sum_probs=71.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|..++ +..+ +..+|+..|+.......+-+.+.. .. +.-+.+++..-.
T Consensus 119 g~~VLDlg~G~G~~t~~la--------~~~~------~~~~v~avD~s~~~l~~a~~~~~~~g~~~--v~~~~~D~~~~~ 182 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLA--------QLMR------NDGVIYAFDVDENRLRETRLNLSRLGVLN--VILFHSSSLHIG 182 (315)
T ss_dssp TCEEEECCSSCSHHHHHHH--------HHTT------TCSEEEEECSCHHHHHHHHHHHHHHTCCS--EEEESSCGGGGG
T ss_pred CCEEEEeCCCCCHHHHHHH--------HHhC------CCCEEEEEcCCHHHHHHHHHHHHHhCCCe--EEEEECChhhcc
Confidence 4689999999999999885 3321 235899999987766655544321 11 111223443322
Q ss_pred CCCCceeEEEecC---cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 135 FPKSTLHVVNSFN---AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 135 ~p~~s~d~~~S~~---alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.+++++|+|++.. .+.-+.+.|.... .. .++. .....+....+|+.-++-|+|||+|+
T Consensus 183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~--------------~~-~~~~----~~~~~~~q~~~L~~~~~~LkpGG~lv 243 (315)
T 1ixk_A 183 ELNVEFDKILLDAPCTGSGTIHKNPERKW--------------NR-TMDD----IKFCQGLQMRLLEKGLEVLKPGGILV 243 (315)
T ss_dssp GGCCCEEEEEEECCTTSTTTCC----------------------C-CHHH----HHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccCCEEEEeCCCCCcccccCChhHhh--------------cC-CHHH----HHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 3467899999842 1221222222110 00 1111 12233345678888899999999999
Q ss_pred EEecc
Q 018250 212 FSLIT 216 (359)
Q Consensus 212 l~~~g 216 (359)
+++..
T Consensus 244 ~stcs 248 (315)
T 1ixk_A 244 YSTCS 248 (315)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 97753
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=5.9e-05 Score=71.71 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCC----CCCchHHHHHhCCCCcc---cccccCc-c
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDH----TENDFNTLFRTLPPRKY---YAAGVPG-S 129 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDL----p~NDFn~lf~~l~~~~~---~~~~vpg-s 129 (359)
..+|+|+|||+|..|..+++. -+|+..|+ ..++. ..++.+.. -+.-+-| +
T Consensus 83 g~~VLDlGcG~G~~s~~la~~------------------~~V~gvD~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~D 140 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGL------------------KNVREVKGLTKGGPGHE----EPIPMSTYGWNLVRLQSGVD 140 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTS------------------TTEEEEEEECCCSTTSC----CCCCCCSTTGGGEEEECSCC
T ss_pred CCEEEEEcCCCCHHHHHHHhc------------------CCEEEEeccccCchhHH----HHHHhhhcCCCCeEEEeccc
Confidence 479999999999999887521 14566665 12111 01110100 0111123 4
Q ss_pred cccCCCCCCceeEEEecCccc---ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 130 FHGRLFPKSTLHVVNSFNAMH---WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 130 fy~~l~p~~s~d~~~S~~alH---WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
+.. +|++++|+|+|..+++ |.. + +. +.+ ..|+...+-|+|
T Consensus 141 ~~~--l~~~~fD~V~sd~~~~~g~~~~-------d--------------------------~~-~~l-~~L~~~~~~Lkp 183 (305)
T 2p41_A 141 VFF--IPPERCDTLLCDIGESSPNPTV-------E--------------------------AG-RTL-RVLNLVENWLSN 183 (305)
T ss_dssp TTT--SCCCCCSEEEECCCCCCSSHHH-------H--------------------------HH-HHH-HHHHHHHHHCCT
T ss_pred ccc--CCcCCCCEEEECCccccCcchh-------h--------------------------HH-HHH-HHHHHHHHHhCC
Confidence 432 3678999999987764 311 1 00 011 356666789999
Q ss_pred CceeEEEeccC
Q 018250 207 GGLMVFSLITG 217 (359)
Q Consensus 207 GG~lvl~~~g~ 217 (359)
||.|++.++..
T Consensus 184 GG~~v~kv~~~ 194 (305)
T 2p41_A 184 NTQFCVKVLNP 194 (305)
T ss_dssp TCEEEEEESCC
T ss_pred CCEEEEEeCCC
Confidence 99999977643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.8e-05 Score=70.28 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=62.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH- 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy- 131 (359)
..+|+|+|||+|..|+.++ +.+ ++..+|+..|+........-+.+.. .. -+.. |++.
T Consensus 64 ~~~VLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~ 126 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMA--------REL------PADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE---GPALQ 126 (248)
T ss_dssp CSEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHH
T ss_pred CCEEEEecCCchHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHH
Confidence 5799999999999999884 222 1257899999976555444333211 11 1233 2332
Q ss_pred --cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 132 --GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 132 --~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
..+...+++|+|++..... +...+|+.-.+-|+|||+
T Consensus 127 ~l~~~~~~~~fD~V~~d~~~~-----------------------------------------~~~~~l~~~~~~LkpGG~ 165 (248)
T 3tfw_A 127 SLESLGECPAFDLIFIDADKP-----------------------------------------NNPHYLRWALRYSRPGTL 165 (248)
T ss_dssp HHHTCCSCCCCSEEEECSCGG-----------------------------------------GHHHHHHHHHHTCCTTCE
T ss_pred HHHhcCCCCCeEEEEECCchH-----------------------------------------HHHHHHHHHHHhcCCCeE
Confidence 2232345899999854211 223366677789999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
+++...
T Consensus 166 lv~~~~ 171 (248)
T 3tfw_A 166 IIGDNV 171 (248)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 998765
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00012 Score=66.59 Aligned_cols=40 Identities=20% Similarity=0.071 Sum_probs=28.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND 108 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND 108 (359)
+.+|+|+|||+|..|+.+++.+ +. . .|..+|+..|+....
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~----~~-~------~~~~~V~gvD~s~~~ 121 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLT----KI-M------GIDCQVIGIDRDLSR 121 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHH----HH-T------TCCCEEEEEESCCTT
T ss_pred CCEEEEEeCCCCHHHHHHHHhh----hh-c------CCCCEEEEEeCChHH
Confidence 3599999999999999875321 10 1 134689999987644
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=71.57 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=75.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC--C
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL--F 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l--~ 135 (359)
..+|+|+|||+|..|..++ +.. +..+++..|........+-+.+.....-+..+.+++.... +
T Consensus 247 g~~VLDlgaG~G~~t~~la--------~~~-------~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~ 311 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHIL--------EVA-------PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC 311 (429)
T ss_dssp TCEEEEESCTTCHHHHHHH--------HHC-------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH
T ss_pred cCeEEEECCCchHHHHHHH--------HHc-------CCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhc
Confidence 4689999999999999885 222 2358999999888777665554210000111223443322 5
Q ss_pred CCCceeEEEe---cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 136 PKSTLHVVNS---FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 136 p~~s~d~~~S---~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+++++|+|++ ++....+.+.|..... .++.++ ....+....+|+.-.+-|+|||+|++
T Consensus 312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~--------------~~~~~~-----~~l~~~q~~~L~~a~~~LkpGG~lvy 372 (429)
T 1sqg_A 312 GEQQFDRILLDAPCSATGVIRRHPDIKWL--------------RRDRDI-----PELAQLQSEILDAIWPHLKTGGTLVY 372 (429)
T ss_dssp TTCCEEEEEEECCCCCGGGTTTCTTHHHH--------------CCTTHH-----HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ccCCCCEEEEeCCCCcccccCCCcchhhc--------------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 6789999997 3344444444432110 011111 11223345788888899999999999
Q ss_pred Eecc
Q 018250 213 SLIT 216 (359)
Q Consensus 213 ~~~g 216 (359)
++..
T Consensus 373 stcs 376 (429)
T 1sqg_A 373 ATCS 376 (429)
T ss_dssp EESC
T ss_pred EECC
Confidence 8753
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=8.7e-05 Score=71.45 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=73.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..++.++. .. .|...++..|+........-+++..... .+.-+-+++.+...
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~--------~~------~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAAS--------TL------GPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR 268 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHH--------HH------CTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred CCCEEEeCCCCcCHHHHHHHH--------hh------CCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence 356899999999999988852 22 1346899999877665544443321100 12223346666566
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|.+++|+++++-..+|... .. .+.......+++.-.+-|+|||++++.+.
T Consensus 269 ~~~~~D~Ii~npPyg~r~~----------------------~~--------~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLG----------------------RK--------EGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp TCCCCSEEEECCCSCC--------------------------C--------HHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ccCCCCEEEECCCCcCccC----------------------Cc--------ccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7778999999765554110 00 11223446788888899999999999874
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=9.9e-05 Score=69.64 Aligned_cols=108 Identities=8% Similarity=-0.095 Sum_probs=61.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-------CCc-ccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-------PRK-YYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-------~~~-~~~~~vpg 128 (359)
.+.+|+|+|||+|..+..++ +. .+..+++..|+-.......-+.++ ..+ -++. +
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~---~ 151 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVL--------KH-------DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI---A 151 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHT--------TS-------TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE---S
T ss_pred CCCEEEEEcCCcCHHHHHHH--------hc-------CCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE---C
Confidence 35799999999999998874 11 134688888887644433333321 111 1222 2
Q ss_pred ccccCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 129 SFHGRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 129 sfy~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+..+-+ .+++++|+|++...-+|... +..+ ....|++.-++-|+||
T Consensus 152 D~~~~l~~~~~~fD~Ii~d~~~~~~~~-~~~l--------------------------------~~~~~l~~~~~~Lkpg 198 (296)
T 1inl_A 152 NGAEYVRKFKNEFDVIIIDSTDPTAGQ-GGHL--------------------------------FTEEFYQACYDALKED 198 (296)
T ss_dssp CHHHHGGGCSSCEEEEEEEC-----------C--------------------------------CSHHHHHHHHHHEEEE
T ss_pred cHHHHHhhCCCCceEEEEcCCCcccCc-hhhh--------------------------------hHHHHHHHHHHhcCCC
Confidence 322211 24678999999766565421 1110 1134777778999999
Q ss_pred ceeEEEec
Q 018250 208 GLMVFSLI 215 (359)
Q Consensus 208 G~lvl~~~ 215 (359)
|+|++...
T Consensus 199 G~lv~~~~ 206 (296)
T 1inl_A 199 GVFSAETE 206 (296)
T ss_dssp EEEEEECC
T ss_pred cEEEEEcc
Confidence 99999853
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=65.40 Aligned_cols=100 Identities=14% Similarity=0.035 Sum_probs=64.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC----CCCcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL----PPRKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l----~~~~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..++.++ +.. .|..+++..|+.......+-+.+ .... +.-+.+++.+
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~--------~~~------~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~--v~~~~~d~~~ 159 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLA--------RAV------GEKGLVESYEARPHHLAQAERNVRAFWQVEN--VRFHLGKLEE 159 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHH--------HHH------CTTSEEEEEESCHHHHHHHHHHHHHHCCCCC--EEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHH--------HHh------CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC--EEEEECchhh
Confidence 35699999999999998875 221 13458999998765544443332 1111 1122346655
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..+|++++|++++. + |.. ..+|+.-.+-|+|||++++
T Consensus 160 ~~~~~~~~D~v~~~----~----~~~-----------------------------------~~~l~~~~~~L~~gG~l~~ 196 (258)
T 2pwy_A 160 AELEEAAYDGVALD----L----MEP-----------------------------------WKVLEKAALALKPDRFLVA 196 (258)
T ss_dssp CCCCTTCEEEEEEE----S----SCG-----------------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred cCCCCCCcCEEEEC----C----cCH-----------------------------------HHHHHHHHHhCCCCCEEEE
Confidence 44788999999982 2 210 0256667788999999999
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
...
T Consensus 197 ~~~ 199 (258)
T 2pwy_A 197 YLP 199 (258)
T ss_dssp EES
T ss_pred EeC
Confidence 874
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=66.98 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=62.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC---CC-Cc-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL---PP-RK-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l---~~-~~-~~~~~vpgsfy~ 132 (359)
+.+|+|+|||+|..|+.++ +.+ .+..+|+..|+........-+.+ .- .. -+.. |+..+
T Consensus 61 ~~~VLDiG~G~G~~t~~la--------~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~~ 123 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMS--------LAL------PDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL---GPALD 123 (242)
T ss_dssp CSEEEEEESCCSHHHHHHH--------HTS------CTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE---SCHHH
T ss_pred cCEEEEeeCCcCHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHH
Confidence 4699999999999999885 322 12568999998775533222111 11 11 1222 34433
Q ss_pred CCCC------CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 133 RLFP------KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 133 ~l~p------~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
.+.. ++++|+||+... . .+...+|+.-.+-|+|
T Consensus 124 ~l~~~~~~~~~~~fD~V~~d~~-------~----------------------------------~~~~~~l~~~~~~Lkp 162 (242)
T 3r3h_A 124 TLHSLLNEGGEHQFDFIFIDAD-------K----------------------------------TNYLNYYELALKLVTP 162 (242)
T ss_dssp HHHHHHHHHCSSCEEEEEEESC-------G----------------------------------GGHHHHHHHHHHHEEE
T ss_pred HHHHHhhccCCCCEeEEEEcCC-------h----------------------------------HHhHHHHHHHHHhcCC
Confidence 2211 578999987532 0 1233467777889999
Q ss_pred CceeEEEecc
Q 018250 207 GGLMVFSLIT 216 (359)
Q Consensus 207 GG~lvl~~~g 216 (359)
||++++...-
T Consensus 163 GG~lv~d~~~ 172 (242)
T 3r3h_A 163 KGLIAIDNIF 172 (242)
T ss_dssp EEEEEEECSS
T ss_pred CeEEEEECCc
Confidence 9999996543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00018 Score=67.13 Aligned_cols=107 Identities=9% Similarity=-0.056 Sum_probs=64.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-------CCc-ccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-------PRK-YYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-------~~~-~~~~~vpg 128 (359)
.+.+|+|+|||+|..+..++ +. .+..+++..|+-.......-+.++ ..+ -++.+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~--- 136 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREIL--------KH-------PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD--- 136 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHT--------TC-------TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES---
T ss_pred CCCEEEEECCchHHHHHHHH--------hC-------CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC---
Confidence 46899999999999888774 11 133578888876544333332221 111 12222
Q ss_pred ccccCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 129 SFHGRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 129 sfy~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+..+-+ .+++++|+|++....+|.. +..+.. ..|++.-++-|+||
T Consensus 137 D~~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l~~--------------------------------~~~~~~~~~~L~pg 182 (275)
T 1iy9_A 137 DGFMHIAKSENQYDVIMVDSTEPVGP--AVNLFT--------------------------------KGFYAGIAKALKED 182 (275)
T ss_dssp CSHHHHHTCCSCEEEEEESCSSCCSC--CCCCST--------------------------------THHHHHHHHHEEEE
T ss_pred cHHHHHhhCCCCeeEEEECCCCCCCc--chhhhH--------------------------------HHHHHHHHHhcCCC
Confidence 322211 2468999999977766621 211110 13677778999999
Q ss_pred ceeEEEec
Q 018250 208 GLMVFSLI 215 (359)
Q Consensus 208 G~lvl~~~ 215 (359)
|+|++...
T Consensus 183 G~lv~~~~ 190 (275)
T 1iy9_A 183 GIFVAQTD 190 (275)
T ss_dssp EEEEEECC
T ss_pred cEEEEEcC
Confidence 99999863
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=74.48 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=44.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.++ +. +..+|+..|+.. .....-+.+.... --+.-+.+++.+..+
T Consensus 159 ~~~VLDiGcGtG~la~~la--------~~--------~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~ 221 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAA--------QA--------GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL 221 (480)
T ss_dssp TCEEEEESCSTTHHHHHHH--------HT--------TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred CCEEEEecCcccHHHHHHH--------Hc--------CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc
Confidence 4699999999999887663 21 235899999865 4322222211100 001222345544334
Q ss_pred CCCceeEEEecCccc
Q 018250 136 PKSTLHVVNSFNAMH 150 (359)
Q Consensus 136 p~~s~d~~~S~~alH 150 (359)
| +++|+|+|+..++
T Consensus 222 ~-~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 222 P-EQVDIIISEPMGY 235 (480)
T ss_dssp S-SCEEEEECCCCHH
T ss_pred C-CCeEEEEEeCchH
Confidence 4 6899999986643
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=5e-05 Score=67.61 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=61.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+.++ +.+ ++..+++..|+........-+.+.. .. -+.. |++.+
T Consensus 59 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~ 121 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLA--------RGL------SSGGRVVTLEASEKHADIARSNIERANLNDRVEVRT---GLALD 121 (223)
T ss_dssp CSEEEEECCTTSHHHHHHH--------TTC------CSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHH
T ss_pred CCEEEEecCCccHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHH
Confidence 5799999999999999884 222 1256899999876554443332211 11 1222 23322
Q ss_pred CC--CC---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 133 RL--FP---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 133 ~l--~p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
.+ ++ .+++|+|++....+ +...+|+.-.+-|+||
T Consensus 122 ~~~~~~~~~~~~fD~v~~d~~~~-----------------------------------------~~~~~l~~~~~~L~pg 160 (223)
T 3duw_A 122 SLQQIENEKYEPFDFIFIDADKQ-----------------------------------------NNPAYFEWALKLSRPG 160 (223)
T ss_dssp HHHHHHHTTCCCCSEEEECSCGG-----------------------------------------GHHHHHHHHHHTCCTT
T ss_pred HHHHHHhcCCCCcCEEEEcCCcH-----------------------------------------HHHHHHHHHHHhcCCC
Confidence 11 11 15799998754311 2234666777899999
Q ss_pred ceeEEEec
Q 018250 208 GLMVFSLI 215 (359)
Q Consensus 208 G~lvl~~~ 215 (359)
|++++...
T Consensus 161 G~lv~~~~ 168 (223)
T 3duw_A 161 TVIIGDNV 168 (223)
T ss_dssp CEEEEESC
T ss_pred cEEEEeCC
Confidence 99988654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00018 Score=69.27 Aligned_cols=106 Identities=12% Similarity=0.006 Sum_probs=66.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Cc-ccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RK-YYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~-~~~~~vpg 128 (359)
.+.+|+|+|||+|..++.++ +. .|..+|+..|+........-+.++. .+ -++. +
T Consensus 120 ~~~~VLdIG~G~G~~a~~la--------~~-------~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~---~ 181 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVA--------RH-------ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI---G 181 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHT--------TC-------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE---S
T ss_pred CCCEEEEECCCccHHHHHHH--------Hc-------CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE---C
Confidence 45799999999999988774 11 2346899999876554443333321 11 1222 3
Q ss_pred ccccCC--CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 129 SFHGRL--FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 129 sfy~~l--~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
+..+-+ ++++++|+|++....+|- .+..+ ....|++.-.+-|+|
T Consensus 182 D~~~~l~~~~~~~fDlIi~d~~~p~~--~~~~l--------------------------------~~~~~l~~~~~~Lkp 227 (334)
T 1xj5_A 182 DGVAFLKNAAEGSYDAVIVDSSDPIG--PAKEL--------------------------------FEKPFFQSVARALRP 227 (334)
T ss_dssp CHHHHHHTSCTTCEEEEEECCCCTTS--GGGGG--------------------------------GSHHHHHHHHHHEEE
T ss_pred CHHHHHHhccCCCccEEEECCCCccC--cchhh--------------------------------hHHHHHHHHHHhcCC
Confidence 433222 356899999997654441 01000 123577788899999
Q ss_pred CceeEEEe
Q 018250 207 GGLMVFSL 214 (359)
Q Consensus 207 GG~lvl~~ 214 (359)
||+|++..
T Consensus 228 gG~lv~~~ 235 (334)
T 1xj5_A 228 GGVVCTQA 235 (334)
T ss_dssp EEEEEEEC
T ss_pred CcEEEEec
Confidence 99999874
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=68.12 Aligned_cols=106 Identities=15% Similarity=0.021 Sum_probs=61.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC-------------CCCc-cc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL-------------PPRK-YY 122 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l-------------~~~~-~~ 122 (359)
.+.+|+|+|||+|..++.+++ . +..+++..|+-...-...-+.+ ...+ -+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~--------~--------~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~ 138 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQ--------H--------DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKL 138 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTT--------S--------CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHh--------C--------CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEE
Confidence 457999999999999987741 1 2347777777654333322222 1111 12
Q ss_pred ccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 123 AAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAE 202 (359)
Q Consensus 123 ~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 202 (359)
+.+-...|-.. ++++|+|++....+|-. +..+. ...|++.-++
T Consensus 139 ~~~D~~~~l~~---~~~fD~Ii~d~~~~~~~--~~~l~--------------------------------~~~~l~~~~~ 181 (281)
T 1mjf_A 139 TIGDGFEFIKN---NRGFDVIIADSTDPVGP--AKVLF--------------------------------SEEFYRYVYD 181 (281)
T ss_dssp EESCHHHHHHH---CCCEEEEEEECCCCC-------TT--------------------------------SHHHHHHHHH
T ss_pred EECchHHHhcc---cCCeeEEEECCCCCCCc--chhhh--------------------------------HHHHHHHHHH
Confidence 22211112111 57899999977665511 11110 1347777789
Q ss_pred hhccCceeEEEec
Q 018250 203 ELVPGGLMVFSLI 215 (359)
Q Consensus 203 EL~pGG~lvl~~~ 215 (359)
-|+|||++++...
T Consensus 182 ~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 182 ALNNPGIYVTQAG 194 (281)
T ss_dssp HEEEEEEEEEEEE
T ss_pred hcCCCcEEEEEcC
Confidence 9999999999864
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00019 Score=68.14 Aligned_cols=108 Identities=14% Similarity=0.006 Sum_probs=63.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-------CCc-ccccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-------PRK-YYAAGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-------~~~-~~~~~vp 127 (359)
+.+.+|+|+|||+|..++.++ ++ .|..+++..|+-.......-+.++ ..+ -++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~--- 155 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVV--------KH-------PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV--- 155 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHT--------TC-------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE---
T ss_pred CCCCEEEEECCCchHHHHHHH--------Hc-------CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE---
Confidence 345799999999999998874 11 234688888887644433333222 111 1222
Q ss_pred cccccCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 128 GSFHGRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 128 gsfy~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
++..+-+ .+++++|+|++....+|- |... -....|++.-.+-|+|
T Consensus 156 ~Da~~~l~~~~~~fD~Ii~d~~~~~~---~~~~-------------------------------l~~~~~l~~~~~~Lkp 201 (304)
T 2o07_A 156 GDGFEFMKQNQDAFDVIITDSSDPMG---PAES-------------------------------LFKESYYQLMKTALKE 201 (304)
T ss_dssp SCHHHHHHTCSSCEEEEEEECC---------------------------------------------CHHHHHHHHHEEE
T ss_pred CcHHHHHhhCCCCceEEEECCCCCCC---cchh-------------------------------hhHHHHHHHHHhccCC
Confidence 2332212 256899999997766552 1100 0112477778899999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||+|++...
T Consensus 202 gG~lv~~~~ 210 (304)
T 2o07_A 202 DGVLCCQGE 210 (304)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEecC
Confidence 999999874
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=68.14 Aligned_cols=121 Identities=9% Similarity=-0.039 Sum_probs=68.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|..++ +..+ ...+|+..|+.......+-+.+.. .. +..+.+++.+..
T Consensus 84 g~~VLDlgaG~G~~t~~la--------~~~~------~~~~v~avD~~~~~l~~~~~~~~~~g~~~--v~~~~~D~~~~~ 147 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLA--------QLMK------NKGTIVAVEISKTRTKALKSNINRMGVLN--TIIINADMRKYK 147 (274)
T ss_dssp TCEEEETTCTTCHHHHHHH--------HHTT------TCSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEESCHHHHH
T ss_pred cCEEEEeCCCccHHHHHHH--------HHcC------CCCEEEEECCCHHHHHHHHHHHHHhCCCc--EEEEeCChHhcc
Confidence 4689999999999999885 2221 125899999887665555444321 11 111123433222
Q ss_pred C----CCCceeEEEecC---cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 135 F----PKSTLHVVNSFN---AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 135 ~----p~~s~d~~~S~~---alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
. +++++|+|++.. .+..+.+.|. |+ ..-......+...+|+.-.+-|+||
T Consensus 148 ~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~---------~~--------------~~~~~~~~~~~~~~l~~~~~~Lkpg 204 (274)
T 3ajd_A 148 DYLLKNEIFFDKILLDAPCSGNIIKDKNRN---------VS--------------EEDIKYCSLRQKELIDIGIDLLKKD 204 (274)
T ss_dssp HHHHHTTCCEEEEEEEECCC-----------------------------------HHHHTGGGTCHHHHHHHHHHHEEEE
T ss_pred hhhhhccccCCEEEEcCCCCCCcccccCCC---------CC--------------HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 367899999852 2222222220 00 0111223345677898889999999
Q ss_pred ceeEEEeccC
Q 018250 208 GLMVFSLITG 217 (359)
Q Consensus 208 G~lvl~~~g~ 217 (359)
|+|++++...
T Consensus 205 G~lv~stcs~ 214 (274)
T 3ajd_A 205 GELVYSTCSM 214 (274)
T ss_dssp EEEEEEESCC
T ss_pred CEEEEEECCC
Confidence 9999987543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00045 Score=66.28 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=67.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C--cccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R--KYYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~--~~~~~~vpgsfy 131 (359)
..+|+|+|||+|..|+.++. . ..+|+..|+.......+-++... . --|+. ++..
T Consensus 154 ~~~VLDlgcGtG~~sl~la~--------~---------ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~---~D~~ 213 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAA--------A---------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC---EDAM 213 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC---SCHH
T ss_pred CCcEEEcccccCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE---CcHH
Confidence 46899999999999998851 1 13889999877555444333211 1 11333 3443
Q ss_pred cCCC----CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 132 GRLF----PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 132 ~~l~----p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+-+. ..+++|+|++.- |..-... ++.++ ...+|+..+|+.-.+-|+||
T Consensus 214 ~~l~~~~~~~~~fD~Ii~dP--------P~~~~~~------~~~~~--------------~~~~~~~~ll~~~~~~Lkpg 265 (332)
T 2igt_A 214 KFIQREERRGSTYDIILTDP--------PKFGRGT------HGEVW--------------QLFDHLPLMLDICREILSPK 265 (332)
T ss_dssp HHHHHHHHHTCCBSEEEECC--------CSEEECT------TCCEE--------------EHHHHHHHHHHHHHHTBCTT
T ss_pred HHHHHHHhcCCCceEEEECC--------ccccCCc------hHHHH--------------HHHHHHHHHHHHHHHhcCcC
Confidence 3221 157899999842 2110000 00011 13456778898888999999
Q ss_pred ceeEEEeccCC
Q 018250 208 GLMVFSLITGP 218 (359)
Q Consensus 208 G~lvl~~~g~~ 218 (359)
|+++++.....
T Consensus 266 G~lli~~~~~~ 276 (332)
T 2igt_A 266 ALGLVLTAYSI 276 (332)
T ss_dssp CCEEEEEECCT
T ss_pred cEEEEEECCCC
Confidence 99888886543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00037 Score=62.65 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=61.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.+++ . ..+++..|+........-+...... --+..+.+++.+.+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~--------~---------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 153 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSE--------V---------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE 153 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------H---------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred CCCEEEEeCCCccHHHHHHHH--------h---------CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence 356999999999999998852 1 1378888887655444333221000 00112234555533
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++. |.. ..+|+.-.+-|+|||++++..
T Consensus 154 ~~~~~~D~v~~~~--------~~~-----------------------------------~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 154 VPEGIFHAAFVDV--------REP-----------------------------------WHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp CCTTCBSEEEECS--------SCG-----------------------------------GGGHHHHHHHBCTTCEEEEEE
T ss_pred cCCCcccEEEECC--------cCH-----------------------------------HHHHHHHHHHcCCCCEEEEEe
Confidence 4778999999831 210 014555678899999999988
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 191 ~ 191 (248)
T 2yvl_A 191 P 191 (248)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0002 Score=68.42 Aligned_cols=106 Identities=11% Similarity=-0.058 Sum_probs=65.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Cc-ccccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RK-YYAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~-~~~~~vpg 128 (359)
.+.+|+|+|||+|..++.++ +. .|..+++..|+........-+.++. .+ -++. +
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~---~ 177 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELC--------KY-------KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI---E 177 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHT--------TC-------TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE---S
T ss_pred CCCEEEEEcCCccHHHHHHH--------Hc-------CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE---c
Confidence 45799999999999988773 11 2346888888876554444443332 01 1222 2
Q ss_pred ccccCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Q 018250 129 SFHGRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDF-ESILNARAEELVP 206 (359)
Q Consensus 129 sfy~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~-~~fL~~Ra~EL~p 206 (359)
+..+-+ .+++++|+|++...-+|- |.. ..+ ..|++.-.+-|+|
T Consensus 178 D~~~~l~~~~~~fDvIi~d~~~p~~---~~~--------------------------------~l~~~~~l~~~~~~Lkp 222 (321)
T 2pt6_A 178 DASKFLENVTNTYDVIIVDSSDPIG---PAE--------------------------------TLFNQNFYEKIYNALKP 222 (321)
T ss_dssp CHHHHHHHCCSCEEEEEEECCCSSS---GGG--------------------------------GGSSHHHHHHHHHHEEE
T ss_pred cHHHHHhhcCCCceEEEECCcCCCC---cch--------------------------------hhhHHHHHHHHHHhcCC
Confidence 332212 246789999997654441 100 001 3477778899999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||++++...
T Consensus 223 gG~lv~~~~ 231 (321)
T 2pt6_A 223 NGYCVAQCE 231 (321)
T ss_dssp EEEEEEEEC
T ss_pred CcEEEEEcC
Confidence 999999864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.30 E-value=8e-05 Score=69.86 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=49.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..|..+++ +. .+|+..|+.......+-+....... -+.-+.+++.+-.
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~--------~~---------~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLE--------KA---------KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHH--------HS---------SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred CCCEEEEEcCcccHHHHHHHh--------hC---------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc
Confidence 356899999999999998852 21 2778888766554444433321100 0112234554433
Q ss_pred CCCCceeEEEecCcccccCC
Q 018250 135 FPKSTLHVVNSFNAMHWLSK 154 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~ 154 (359)
+| ++|.++|+...||.+.
T Consensus 91 ~~--~fD~vv~nlpy~~~~~ 108 (285)
T 1zq9_A 91 LP--FFDTCVANLPYQISSP 108 (285)
T ss_dssp CC--CCSEEEEECCGGGHHH
T ss_pred ch--hhcEEEEecCcccchH
Confidence 44 7999999999999653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00026 Score=71.38 Aligned_cols=124 Identities=12% Similarity=0.140 Sum_probs=73.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccc-cccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKY-YAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~-~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..|+.+++ ... +.-+|+.+|+.......+-+++.. ..+ ++. ++...
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~--------~~~------~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~---~D~~~ 179 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISA--------RMN------NEGAILANEFSASRVKVLHANISRCGISNVALTH---FDGRV 179 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHH--------HTT------TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC---CCSTT
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------hCC------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CCHHH
Confidence 357999999999999998852 221 235899999988776666554421 111 222 23322
Q ss_pred CCC-CCCceeEEEe---cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 133 RLF-PKSTLHVVNS---FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 133 ~l~-p~~s~d~~~S---~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
-.. +++++|.|++ ++...-+.+.|..... -.++.. ......-..+|+.-++-|||||
T Consensus 180 ~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~---------------~~~~~~----~~l~~~q~~iL~~a~~~LkpGG 240 (479)
T 2frx_A 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN---------------WSPESN----QEIAATQRELIDSAFHALRPGG 240 (479)
T ss_dssp HHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSS---------------CCHHHH----HHHHHHHHHHHHHHHHHEEEEE
T ss_pred hhhhccccCCEEEECCCcCCcccccCCHHHHhh---------------cCHhHH----HHHHHHHHHHHHHHHHhcCCCC
Confidence 111 4578999998 3334333444432110 011111 1222234567888889999999
Q ss_pred eeEEEecc
Q 018250 209 LMVFSLIT 216 (359)
Q Consensus 209 ~lvl~~~g 216 (359)
+||.++..
T Consensus 241 ~LvysTcs 248 (479)
T 2frx_A 241 TLVYSTCT 248 (479)
T ss_dssp EEEEEESC
T ss_pred EEEEeccc
Confidence 99998754
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00096 Score=60.70 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=33.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL 116 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l 116 (359)
...+|+|+|||||..++.++ +. .|..+|+..|.-.......-+++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la--------~~-------~~~~~V~avDi~~~al~~A~~N~ 59 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELV--------ER-------GQIKSAIAGEVVEGPYQSAVKNV 59 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHH--------HT-------TSEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHH
Confidence 34799999999999999885 22 24458999999876665554443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00024 Score=67.77 Aligned_cols=109 Identities=14% Similarity=-0.003 Sum_probs=62.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cc---cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KY---YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~---~~~~vpgsfy 131 (359)
.+.+|+|+|||+|..++.++ +. .|..+++..|+-.......-+.++.. .. -+.-+.++..
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~ 172 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVL--------KH-------ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF 172 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHT--------TC-------TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH
T ss_pred CCCEEEEEcCCcCHHHHHHH--------Hc-------CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHH
Confidence 45799999999999998874 11 23468888888764444433333310 00 0111123332
Q ss_pred cCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+-+ .+++++|+|++...-||- .+..+ |. ..|++.-++-|+|||+|
T Consensus 173 ~~l~~~~~~fD~Ii~d~~~~~~--~~~~l-------------------------~t-------~~~l~~~~~~LkpgG~l 218 (314)
T 2b2c_A 173 EFLKNHKNEFDVIITDSSDPVG--PAESL-------------------------FG-------QSYYELLRDALKEDGIL 218 (314)
T ss_dssp HHHHHCTTCEEEEEECCC-----------------------------------------------HHHHHHHHEEEEEEE
T ss_pred HHHHhcCCCceEEEEcCCCCCC--cchhh-------------------------hH-------HHHHHHHHhhcCCCeEE
Confidence 212 257899999997654441 00000 00 34777888999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
++..
T Consensus 219 v~~~ 222 (314)
T 2b2c_A 219 SSQG 222 (314)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9986
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=65.15 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=61.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C-cccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R-KYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~-~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+.++ +.+ ++..+++..|+........-+.+.. . --+.. ++..+
T Consensus 65 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~ 127 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMG--------LAL------PKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL---SPAKD 127 (225)
T ss_dssp CSEEEEECCTTSHHHHHHH--------TTC------CTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHH
T ss_pred CCEEEEeCCcchHHHHHHH--------HhC------CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---CCHHH
Confidence 4699999999999999884 221 1256899999876555444333211 1 11222 23322
Q ss_pred CC--CCC----CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 133 RL--FPK----STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 133 ~l--~p~----~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
.+ ++. +++|+|++.. | . .+...+|+.-.+-|+|
T Consensus 128 ~~~~~~~~~~~~~fD~v~~~~---~-----~---------------------------------~~~~~~l~~~~~~L~p 166 (225)
T 3tr6_A 128 TLAELIHAGQAWQYDLIYIDA---D-----K---------------------------------ANTDLYYEESLKLLRE 166 (225)
T ss_dssp HHHHHHTTTCTTCEEEEEECS---C-----G---------------------------------GGHHHHHHHHHHHEEE
T ss_pred HHHHhhhccCCCCccEEEECC---C-----H---------------------------------HHHHHHHHHHHHhcCC
Confidence 21 111 7899998533 1 0 1334467777789999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||++++.-.
T Consensus 167 gG~lv~~~~ 175 (225)
T 3tr6_A 167 GGLIAVDNV 175 (225)
T ss_dssp EEEEEEECS
T ss_pred CcEEEEeCC
Confidence 999998654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.26 E-value=8.7e-05 Score=67.10 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=60.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---C-Ccc-cccccC-----
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---P-RKY-YAAGVP----- 127 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---~-~~~-~~~~vp----- 127 (359)
..+|+|+|||+|..|+.++ +..+ +..+++..|.........-+.+. - ..+ +..+-.
T Consensus 61 ~~~VLdiG~G~G~~~~~la--------~~~~------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFA--------SALP------EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ 126 (239)
T ss_dssp CSEEEEECCTTCHHHHHHH--------HHSC------TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred cCEEEEEeCCCCHHHHHHH--------HhCC------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence 4689999999999999885 2221 13577777776544333222211 0 101 111100
Q ss_pred -------cccccCCCCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 018250 128 -------GSFHGRLFPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILN 198 (359)
Q Consensus 128 -------gsfy~~l~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~ 198 (359)
.+....-||+ +++|+|++.... .++..+|+
T Consensus 127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~-----------------------------------------~~~~~~l~ 165 (239)
T 2hnk_A 127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADK-----------------------------------------ENYPNYYP 165 (239)
T ss_dssp HHHHCSSCCGGGTTTCCSTTCEEEEEECSCG-----------------------------------------GGHHHHHH
T ss_pred HHHhhcccccccccccCCCCCcCEEEEeCCH-----------------------------------------HHHHHHHH
Confidence 0112344666 899999986321 12334667
Q ss_pred HHHHhhccCceeEEEec
Q 018250 199 ARAEELVPGGLMVFSLI 215 (359)
Q Consensus 199 ~Ra~EL~pGG~lvl~~~ 215 (359)
.-.+-|+|||++++...
T Consensus 166 ~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 166 LILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHHHHEEEEEEEEEECS
T ss_pred HHHHHcCCCeEEEEEcc
Confidence 77889999999999764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0012 Score=60.25 Aligned_cols=103 Identities=9% Similarity=0.011 Sum_probs=64.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
+..+|+|+|||||..++.++ +. .|...|+..|+........-+++..... -+...-|+..+-+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la--------~~-------~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLL--------QM-------GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHH--------HT-------TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred CCCEEEEECCchHHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence 34799999999999999885 22 2345899999988776666555421000 1122234555555
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.|.+.+|++++. ++ | ..-...+|....+-|+++|+|+++-
T Consensus 86 ~~~~~~D~Ivia-----------Gm----------G-------------------g~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 86 EEADNIDTITIC-----------GM----------G-------------------GRLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CGGGCCCEEEEE-----------EE----------C-------------------HHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccccCEEEEe-----------CC----------c-------------------hHHHHHHHHHHHHHhCcCCEEEEEC
Confidence 555568877741 00 0 0124457777677789999888776
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00018 Score=65.96 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=61.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsfy 131 (359)
++.+|+|+|||+|..|+.++ +.. ++..+++..|.........-+.+.. ..+ +.. |+..
T Consensus 79 ~~~~VLeiG~G~G~~~~~la--------~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~---gda~ 141 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATA--------LAI------PEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPAL 141 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHH--------HHS------CTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHH
T ss_pred CcCEEEEeCCCcCHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE---CCHH
Confidence 35699999999999999885 332 1246899999877554433332211 111 222 2333
Q ss_pred cCC--C-----CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018250 132 GRL--F-----PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL 204 (359)
Q Consensus 132 ~~l--~-----p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 204 (359)
+.+ + +++++|++|+... . .+...+|+.-.+-|
T Consensus 142 ~~l~~l~~~~~~~~~fD~V~~d~~---~--------------------------------------~~~~~~l~~~~~~L 180 (247)
T 1sui_A 142 PVLDEMIKDEKNHGSYDFIFVDAD---K--------------------------------------DNYLNYHKRLIDLV 180 (247)
T ss_dssp HHHHHHHHSGGGTTCBSEEEECSC---S--------------------------------------TTHHHHHHHHHHHB
T ss_pred HHHHHHHhccCCCCCEEEEEEcCc---h--------------------------------------HHHHHHHHHHHHhC
Confidence 221 1 2678999998532 0 02234666667889
Q ss_pred ccCceeEEEe
Q 018250 205 VPGGLMVFSL 214 (359)
Q Consensus 205 ~pGG~lvl~~ 214 (359)
+|||++++..
T Consensus 181 kpGG~lv~d~ 190 (247)
T 1sui_A 181 KVGGVIGYDN 190 (247)
T ss_dssp CTTCCEEEEC
T ss_pred CCCeEEEEec
Confidence 9999999864
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=66.76 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=72.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCc-----cc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPG-----SF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpg-----sf 130 (359)
+.+.+|+|||||.|+.|+.++. ..|..+++..|.-...-.-+-..+. ..+++. ++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~---------------~~p~a~y~a~DId~~~le~a~~~l~-----~~g~~~~~~v~D~ 190 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMG---------------LPAETVYIASDIDARLVGFVDEALT-----RLNVPHRTNVADL 190 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTT---------------CCTTCEEEEEESBHHHHHHHHHHHH-----HTTCCEEEEECCT
T ss_pred CCCceeeeeccCccHHHHHHHh---------------hCCCCEEEEEeCCHHHHHHHHHHHH-----hcCCCceEEEeee
Confidence 3478999999999999998841 2467899999987644333322221 112222 22
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeec-------CCCHHHHHHHHHHHHHHH
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCT-------RFMKGVHETFQAQFRSDF 193 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~-------~~~~~~~~~y~~Q~~~D~ 193 (359)
-.. .|+...|++.++-++|-|.+-.+...=..-.++|-|.|.++ +.++...+-|.++|.++.
T Consensus 191 ~~~-~p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~ 259 (281)
T 3lcv_B 191 LED-RLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQA 259 (281)
T ss_dssp TTS-CCCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHH
T ss_pred ccc-CCCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHH
Confidence 222 37789999999999999965444321134456677777754 135666667776665544
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00027 Score=66.12 Aligned_cols=108 Identities=9% Similarity=-0.094 Sum_probs=65.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Cc-ccccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RK-YYAAGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~-~~~~~vp 127 (359)
+.+.+|+|+|||+|..+..++ +. .|..+++..|+-.......-+.++. .+ -++.
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~--------~~-------~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~--- 138 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELC--------KY-------KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI--- 138 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHT--------TC-------TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE---
T ss_pred CCCCeEEEEeCCcCHHHHHHH--------Hc-------CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE---
Confidence 345799999999999988773 11 2345788888866444433333331 11 1222
Q ss_pred cccccCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 128 GSFHGRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 128 gsfy~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
++..+-+ ..++++|+|++....+|.. +..+.. ..|++.-++-|+|
T Consensus 139 ~D~~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l~~--------------------------------~~~l~~~~~~L~p 184 (283)
T 2i7c_A 139 EDASKFLENVTNTYDVIIVDSSDPIGP--AETLFN--------------------------------QNFYEKIYNALKP 184 (283)
T ss_dssp SCHHHHHHHCCSCEEEEEEECCCTTTG--GGGGSS--------------------------------HHHHHHHHHHEEE
T ss_pred CChHHHHHhCCCCceEEEEcCCCCCCc--chhhhH--------------------------------HHHHHHHHHhcCC
Confidence 2322211 1267899999977666521 111100 3477888899999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||+|++...
T Consensus 185 gG~lv~~~~ 193 (283)
T 2i7c_A 185 NGYCVAQCE 193 (283)
T ss_dssp EEEEEEECC
T ss_pred CcEEEEECC
Confidence 999998854
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00077 Score=67.22 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=71.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|..++ +..+ ...+++..|+.......+-+.+.. .. +..+.+++....
T Consensus 260 g~~VLDlgaG~G~~t~~la--------~~~~------~~~~v~a~D~s~~~l~~~~~~~~~~g~~~--v~~~~~D~~~~~ 323 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLA--------ELMK------NKGKIYAFDVDKMRMKRLKDFVKRMGIKI--VKPLVKDARKAP 323 (450)
T ss_dssp TCEEEESSCTTCHHHHHHH--------HHTT------TCSEEEEECSCHHHHHHHHHHHHHTTCCS--EEEECSCTTCCS
T ss_pred cCEEEEeCCCccHHHHHHH--------HHcC------CCCEEEEEcCCHHHHHHHHHHHHHcCCCc--EEEEEcChhhcc
Confidence 4689999999999999885 2221 125899999987665555444321 11 111223443322
Q ss_pred --CCCCceeEEEe---cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 135 --FPKSTLHVVNS---FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 135 --~p~~s~d~~~S---~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
++++++|.|++ ++.+.-+.+.|..... .++..+ ......-..+|+.-++-|+|||+
T Consensus 324 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~--------------~~~~~~-----~~l~~~q~~iL~~a~~~LkpGG~ 384 (450)
T 2yxl_A 324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWR--------------LREDKI-----NEMSQLQRELLESAARLVKPGGR 384 (450)
T ss_dssp SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHH--------------CCTTSH-----HHHHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhccCCCCEEEEcCCCCCCeeeccChhhhhh--------------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCcE
Confidence 56688999997 2333333333332110 011111 11112225678888899999999
Q ss_pred eEEEeccC
Q 018250 210 MVFSLITG 217 (359)
Q Consensus 210 lvl~~~g~ 217 (359)
|++++...
T Consensus 385 lvy~tcs~ 392 (450)
T 2yxl_A 385 LLYTTCSI 392 (450)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99887643
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=71.23 Aligned_cols=127 Identities=15% Similarity=0.067 Sum_probs=73.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC-C
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL-F 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l-~ 135 (359)
...+|+|+|||+|..|+.++ +..+ ..-+|+.+|+.......+-+++....+-+..+-++..... +
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA--------~~~~------~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLA--------ARMG------GKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEA 166 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHH--------HHTT------TCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHH--------HhCC------CCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhh
Confidence 35799999999999999885 3321 2358999999887766655544320000222223433222 2
Q ss_pred CCCceeEEEec---CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 136 PKSTLHVVNSF---NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 136 p~~s~d~~~S~---~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.++++|.|++. +..--+.+.|.... ..++..+. ...+....+|+.-++-|+|||+|+.
T Consensus 167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~--------------~~~~~~~~-----~l~~~Q~~iL~~a~~~LkpGG~Lvy 227 (464)
T 3m6w_A 167 FGTYFHRVLLDAPCSGEGMFRKDREAAR--------------HWGPSAPK-----RMAEVQKALLAQASRLLGPGGVLVY 227 (464)
T ss_dssp HCSCEEEEEEECCCCCGGGTTTCTTSGG--------------GCCTTHHH-----HHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccCCEEEECCCcCCccccccChHHhh--------------hcCHHHHH-----HHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 36799999962 22222233332211 01122221 2223446788888899999999998
Q ss_pred Eecc
Q 018250 213 SLIT 216 (359)
Q Consensus 213 ~~~g 216 (359)
++..
T Consensus 228 sTCs 231 (464)
T 3m6w_A 228 STCT 231 (464)
T ss_dssp EESC
T ss_pred Eecc
Confidence 7753
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00068 Score=59.15 Aligned_cols=75 Identities=12% Similarity=-0.053 Sum_probs=46.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.+. +. +.-+++..|+........-+... +--++ .+++.+ +|
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~--------~~--------~~~~v~~vD~~~~~~~~a~~~~~-~~~~~---~~d~~~--~~ 108 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSY--------LL--------GAESVTAFDIDPDAIETAKRNCG-GVNFM---VADVSE--IS 108 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHH--------HT--------TBSEEEEEESCHHHHHHHHHHCT-TSEEE---ECCGGG--CC
T ss_pred CCCEEEEEeCCccHHHHHHH--------Hc--------CCCEEEEEECCHHHHHHHHHhcC-CCEEE---ECcHHH--CC
Confidence 45799999999999988774 21 12368999987655544444333 11122 235544 34
Q ss_pred CCceeEEEecCcccccCC
Q 018250 137 KSTLHVVNSFNAMHWLSK 154 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~ 154 (359)
+++|+++++-.+||++.
T Consensus 109 -~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 109 -GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp -CCEEEEEECCCC-----
T ss_pred -CCeeEEEECCCchhccC
Confidence 79999999999999653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00014 Score=64.32 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=60.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l- 134 (359)
+.+|+|+|||+|..|+.++ +.. .+..+++..|+........-+.+... .--+.-+.++..+.+
T Consensus 57 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 122 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFA--------RAI------SISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA 122 (210)
T ss_dssp CSEEEEESCGGGHHHHHHH--------TTS------CTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT
T ss_pred CCEEEEEcCCccHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc
Confidence 4689999999999999874 221 11468999998764443333222110 000111223443321
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
..++ +|++++... . .+...+|+.-.+-|+|||++++..
T Consensus 123 ~~~~-fD~v~~~~~--------~---------------------------------~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 123 GQRD-IDILFMDCD--------V---------------------------------FNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TCCS-EEEEEEETT--------T---------------------------------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred cCCC-CCEEEEcCC--------h---------------------------------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2245 999998621 0 023456777788999999999854
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 161 ~ 161 (210)
T 3c3p_A 161 A 161 (210)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0022 Score=55.97 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=49.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.+. +. ..-+++..|+.......+-+.......-+.-+.+++.+ +|
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~--------~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~ 110 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGAL--------LL--------GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE--FN 110 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG--CC
T ss_pred CcCEEEEeeCCCCHHHHHHH--------Hc--------CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH--cC
Confidence 35689999999999988774 21 01278999987655554444433211112222345544 24
Q ss_pred CCceeEEEecCcccccC
Q 018250 137 KSTLHVVNSFNAMHWLS 153 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs 153 (359)
+++|+++++-.+|+.+
T Consensus 111 -~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 111 -SRVDIVIMNPPFGSQR 126 (207)
T ss_dssp -CCCSEEEECCCCSSSS
T ss_pred -CCCCEEEEcCCCcccc
Confidence 5899999998888855
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00059 Score=61.84 Aligned_cols=101 Identities=8% Similarity=0.073 Sum_probs=61.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsfy 131 (359)
++.+|+|+|||+|..|+.++ +.. ++..+++..|+........-+.+.. ..+ +.. |+..
T Consensus 70 ~~~~VLeiG~G~G~~~~~la--------~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~ 132 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTA--------LSI------PDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE---SDAM 132 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHH--------HHS------CTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHH
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHH
Confidence 35699999999999999885 222 1246888888866444333222211 111 222 2332
Q ss_pred cC---C----CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018250 132 GR---L----FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL 204 (359)
Q Consensus 132 ~~---l----~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 204 (359)
+. + ++++++|++|+.. |. .+...||+.-.+-|
T Consensus 133 ~~l~~l~~~~~~~~~fD~I~~d~---~~--------------------------------------~~~~~~l~~~~~~L 171 (237)
T 3c3y_A 133 LALDNLLQGQESEGSYDFGFVDA---DK--------------------------------------PNYIKYHERLMKLV 171 (237)
T ss_dssp HHHHHHHHSTTCTTCEEEEEECS---CG--------------------------------------GGHHHHHHHHHHHE
T ss_pred HHHHHHHhccCCCCCcCEEEECC---ch--------------------------------------HHHHHHHHHHHHhc
Confidence 21 1 1367899999742 20 12345677777899
Q ss_pred ccCceeEEEec
Q 018250 205 VPGGLMVFSLI 215 (359)
Q Consensus 205 ~pGG~lvl~~~ 215 (359)
+|||++++...
T Consensus 172 ~pGG~lv~d~~ 182 (237)
T 3c3y_A 172 KVGGIVAYDNT 182 (237)
T ss_dssp EEEEEEEEECT
T ss_pred CCCeEEEEecC
Confidence 99999998654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00025 Score=66.47 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=42.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C-cccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R-KYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~-~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..++.++ +. |..+|+..|+........-++... . --|+. +++.+
T Consensus 124 ~~~vLDlG~GsG~~~~~la--------~~--------~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~---~D~~~ 184 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVA--------KF--------SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK---GEFLE 184 (284)
T ss_dssp CCEEEEESCTTSHHHHHHH--------HH--------SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE---SSTTG
T ss_pred CCEEEEEeCchhHHHHHHH--------HC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE---Ccchh
Confidence 3589999999999999884 22 246899999876554443333211 1 11222 34443
Q ss_pred CCCCCCce---eEEEec
Q 018250 133 RLFPKSTL---HVVNSF 146 (359)
Q Consensus 133 ~l~p~~s~---d~~~S~ 146 (359)
.++ +++ |+|+|+
T Consensus 185 -~~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 185 -PFK-EKFASIEMILSN 199 (284)
T ss_dssp -GGG-GGTTTCCEEEEC
T ss_pred -hcc-cccCCCCEEEEc
Confidence 223 478 999997
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00035 Score=64.39 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=64.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
.+.+|+|+|||+|+.++.++ +...++..|+-...-..+-..+.. .--+.. .++...
T Consensus 105 ~p~~VLDlGCG~gpLal~~~------------------~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v---~D~~~~ 163 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER------------------GIASVWGCDIHQGLGDVITPFAREKDWDFTFAL---QDVLCA 163 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT------------------TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEE---CCTTTS
T ss_pred CCCeEEEecCCccHHHHHhc------------------cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEE---eecccC
Confidence 46799999999999998773 346788888776444433222210 000111 133344
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeec-------CCCHHHHHHHHHHHH
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCT-------RFMKGVHETFQAQFR 190 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~-------~~~~~~~~~y~~Q~~ 190 (359)
. |+.+.|++.++-++|-|.+..+......-.++|.+.|.++ +.+|...+-|.++|+
T Consensus 164 ~-~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e 226 (253)
T 3frh_A 164 P-PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFE 226 (253)
T ss_dssp C-CCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHH
T ss_pred C-CCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHH
Confidence 4 4569999999999999976665533333345666666653 123444455555443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00062 Score=63.20 Aligned_cols=101 Identities=11% Similarity=-0.019 Sum_probs=63.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..|+.++ +.. +..+|+..|+.......+-++... +..|+.+ ++.+
T Consensus 119 ~~~~VLDlgcG~G~~s~~la--------~~~-------~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~---d~~~ 180 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLA--------KYS-------KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILA---DNRD 180 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHH--------HHT-------CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEES---CGGG
T ss_pred CCCEEEEecCcCCHHHHHHH--------HhC-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEEC---ChHH
Confidence 35689999999999999885 332 235899999876555444333211 1224443 4433
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
- -.++++|++++.... .. ..+|..-.+.|+|||++++
T Consensus 181 ~-~~~~~~D~Vi~d~p~--------~~----------------------------------~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 181 V-ELKDVADRVIMGYVH--------KT----------------------------------HKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp C-CCTTCEEEEEECCCS--------SG----------------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred c-CccCCceEEEECCcc--------cH----------------------------------HHHHHHHHHHcCCCCEEEE
Confidence 2 115789999885321 11 1245555678999999999
Q ss_pred EeccCC
Q 018250 213 SLITGP 218 (359)
Q Consensus 213 ~~~g~~ 218 (359)
+.....
T Consensus 218 s~~~~~ 223 (272)
T 3a27_A 218 HETVAE 223 (272)
T ss_dssp EEEEEG
T ss_pred EEcCcc
Confidence 887654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0014 Score=62.71 Aligned_cols=128 Identities=12% Similarity=0.001 Sum_probs=70.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.+.+.+ +... ....+++..|+-.......-..+.....-+.-+.|++.. ..+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~--------~~~~--~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~ 198 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQL--------ELKG--DVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLL 198 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHH--------HTTS--SCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCC
T ss_pred CCCEEEeCCCCccHHHHHHHHHH--------HHhc--CCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccc
Confidence 46899999999999998875332 1100 113688999986544333222211000001112234433 235
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHH-HHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDF-ESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~-~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
...+|+|+++-.++|...- . .. ..|..+ .+. ...|. ..|+..-.+-|+|||++++.+.
T Consensus 199 ~~~fD~Ii~NPPfg~~~~~-~-~~----~~~~~~------~~~---------g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 199 VDPVDVVISDLPVGYYPDD-E-NA----KTFELC------REE---------GHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCEEEEEEECCCSEESCH-H-HH----TTSTTC------CSS---------SCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCccEEEECCCCCCcCch-h-hh----hhcccc------CCC---------CcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 6889999999887764321 0 00 001000 000 01122 2477777889999999999985
Q ss_pred c
Q 018250 216 T 216 (359)
Q Consensus 216 g 216 (359)
.
T Consensus 258 ~ 258 (344)
T 2f8l_A 258 D 258 (344)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00073 Score=66.41 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=66.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|+.++. . ...|+..|+.......+-+++.. ..-+.. ++..+-+
T Consensus 215 g~~VLDlg~GtG~~sl~~a~--------~---------ga~V~avDis~~al~~a~~n~~~ng~~~~~~~---~D~~~~l 274 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAAR--------K---------GAYALAVDKDLEALGVLDQAALRLGLRVDIRH---GEALPTL 274 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEE---SCHHHHH
T ss_pred CCeEEEcccchhHHHHHHHH--------c---------CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEE---ccHHHHH
Confidence 46899999999999998852 1 12488999887665544433211 111222 2333222
Q ss_pred --CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 135 --FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 135 --~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
++.. +|+|++. .|. ... +... .....+++..++..-.+-|+|||+|++
T Consensus 275 ~~~~~~-fD~Ii~d--------pP~-f~~---------------~~~~-----~~~~~~~~~~ll~~a~~~LkpGG~Lv~ 324 (393)
T 4dmg_A 275 RGLEGP-FHHVLLD--------PPT-LVK---------------RPEE-----LPAMKRHLVDLVREALRLLAEEGFLWL 324 (393)
T ss_dssp HTCCCC-EEEEEEC--------CCC-CCS---------------SGGG-----HHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred HHhcCC-CCEEEEC--------CCc-CCC---------------CHHH-----HHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1334 9999974 222 111 0111 234556788899999999999999996
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
...
T Consensus 325 ~s~ 327 (393)
T 4dmg_A 325 SSC 327 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0003 Score=63.48 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=60.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCccccc---
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHG--- 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~--- 132 (359)
..+|+|+|||+|..|+.++ +.+ .+..+++..|.........-+.+.. -.--+.-+.|++.+
T Consensus 73 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~ 138 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMA--------LQL------PPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLE 138 (232)
T ss_dssp CCEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 4689999999999999884 221 1245888999876443333222210 00001111233322
Q ss_pred CC-CCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 133 RL-FPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 133 ~l-~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
.+ +++ +++|++|+.... .++..+|+.-.+-|+|||+
T Consensus 139 ~l~~~~~~~~fD~V~~d~~~-----------------------------------------~~~~~~l~~~~~~LkpgG~ 177 (232)
T 3cbg_A 139 QLTQGKPLPEFDLIFIDADK-----------------------------------------RNYPRYYEIGLNLLRRGGL 177 (232)
T ss_dssp HHHTSSSCCCEEEEEECSCG-----------------------------------------GGHHHHHHHHHHTEEEEEE
T ss_pred HHHhcCCCCCcCEEEECCCH-----------------------------------------HHHHHHHHHHHHHcCCCeE
Confidence 22 223 789999975320 1233466677789999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
+++...
T Consensus 178 lv~~~~ 183 (232)
T 3cbg_A 178 MVIDNV 183 (232)
T ss_dssp EEEECT
T ss_pred EEEeCC
Confidence 999654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00045 Score=61.49 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=60.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+.++ +.. .+..+++..|+........-+.+.. .. -+.. +++.+
T Consensus 70 ~~~vLdiG~G~G~~~~~la--------~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~ 132 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALA--------LAL------PADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALE 132 (229)
T ss_dssp CCEEEEECCTTSHHHHHHH--------TTS------CTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHH
T ss_pred CCEEEEEcCCccHHHHHHH--------HhC------CCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE---cCHHH
Confidence 4699999999999998884 221 1246899999876554433322211 11 1222 23322
Q ss_pred CC--CCC----CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 133 RL--FPK----STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 133 ~l--~p~----~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
.+ +++ +++|++++... . .+...+|+.-.+-|+|
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~--------~---------------------------------~~~~~~l~~~~~~L~p 171 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDAD--------K---------------------------------ENCSAYYERCLQLLRP 171 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSC--------S---------------------------------TTHHHHHHHHHHHEEE
T ss_pred HHHHHHhcCCCCCccEEEECCC--------H---------------------------------HHHHHHHHHHHHHcCC
Confidence 11 111 68999998432 0 1233466677788999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||++++...
T Consensus 172 gG~lv~~~~ 180 (229)
T 2avd_A 172 GGILAVLRV 180 (229)
T ss_dssp EEEEEEECC
T ss_pred CeEEEEECC
Confidence 999998543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0049 Score=59.90 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=65.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|..|+.++.. ..+|+..|+.......+-++... .. -|+. ++..+-
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~-----------------~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~---~d~~~~ 269 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG-----------------FREVVAVDSSAEALRRAEENARLNGLGNVRVLE---ANAFDL 269 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-----------------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE---SCHHHH
T ss_pred CCeEEEeeeccCHHHHHHHHh-----------------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE---CCHHHH
Confidence 468999999999999988631 13677777765443333222110 11 1222 233322
Q ss_pred CC----CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 LF----PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 l~----p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
+. +++++|+|++ +.|..... + .. .....+++..+|..-.+-|+|||+
T Consensus 270 ~~~~~~~~~~fD~Ii~--------dpP~~~~~-------~---------~~-----~~~~~~~~~~~l~~~~~~LkpgG~ 320 (382)
T 1wxx_A 270 LRRLEKEGERFDLVVL--------DPPAFAKG-------K---------KD-----VERAYRAYKEVNLRAIKLLKEGGI 320 (382)
T ss_dssp HHHHHHTTCCEEEEEE--------CCCCSCCS-------T---------TS-----HHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHhcCCCeeEEEE--------CCCCCCCC-------h---------hH-----HHHHHHHHHHHHHHHHHhcCCCCE
Confidence 21 2578999997 22321111 0 01 123456788899999999999999
Q ss_pred eEEEecc
Q 018250 210 MVFSLIT 216 (359)
Q Consensus 210 lvl~~~g 216 (359)
|+++...
T Consensus 321 l~~~~~~ 327 (382)
T 1wxx_A 321 LATASCS 327 (382)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998753
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0061 Score=59.32 Aligned_cols=121 Identities=16% Similarity=0.287 Sum_probs=67.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.+++ ++. +..+++..|+-....... . . +..+.+++.. ..++
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~--------~~~------~~~~i~gvDi~~~~~~~a-----~-~--~~~~~~D~~~-~~~~ 96 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFRE--------AHG------TAYRFVGVEIDPKALDLP-----P-W--AEGILADFLL-WEPG 96 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHH--------HHC------SCSEEEEEESCTTTCCCC-----T-T--EEEEESCGGG-CCCS
T ss_pred CCEEEECCCCChHHHHHHHH--------HhC------CCCeEEEEECCHHHHHhC-----C-C--CcEEeCChhh-cCcc
Confidence 45999999999998887752 221 235788888865432111 0 1 1112245543 3356
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHH------HHHHHHHHHHHHHhhccCceeE
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQF------RSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~------~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+++|+|+++=-........ .++ .+.+++..+.|...+ ...+..|+..-.+-|+|||+++
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~ 161 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEAS---------KYP------IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 161 (421)
T ss_dssp SCEEEEEECCCCCCBSCTT---------TCS------BCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCEEEECcCccCccccc---------ccc------cccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEE
Confidence 7899999952222211100 000 001233333332211 1135578988889999999999
Q ss_pred EEecc
Q 018250 212 FSLIT 216 (359)
Q Consensus 212 l~~~g 216 (359)
+.++.
T Consensus 162 ~i~p~ 166 (421)
T 2ih2_A 162 FVVPA 166 (421)
T ss_dssp EEEEG
T ss_pred EEECh
Confidence 99864
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00072 Score=65.73 Aligned_cols=78 Identities=6% Similarity=-0.130 Sum_probs=50.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.++ ... +..+++..|+........-+++..... -+.-+-+++.+..+
T Consensus 218 ~~~vLD~gCGsG~~~i~~a--------~~~-------~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~ 282 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELA--------LRR-------YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ 282 (373)
T ss_dssp SCCEEETTCTTCHHHHHHH--------HTT-------CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG
T ss_pred CCEEEEccCcCcHHHHHHH--------HhC-------CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc
Confidence 4689999999999988874 221 223799999987666555444321100 11222346766667
Q ss_pred CCCceeEEEecCccc
Q 018250 136 PKSTLHVVNSFNAMH 150 (359)
Q Consensus 136 p~~s~d~~~S~~alH 150 (359)
|++++|+|+++-.++
T Consensus 283 ~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 283 YVDSVDFAISNLPYG 297 (373)
T ss_dssp TCSCEEEEEEECCCC
T ss_pred ccCCcCEEEECCCCC
Confidence 889999999965544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00064 Score=68.17 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=70.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..|+.+++ ... ..-+|+.+|+.......+-+++.. .. .++. ++...
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~--------~~~------~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~---~Da~~ 167 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAA--------QMK------GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN---HAPAE 167 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHH--------HHT------TCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC---CCHHH
T ss_pred CCCEEEEECCCcCHHHHHHHH--------HcC------CCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe---CCHHH
Confidence 357999999999999998852 221 135899999987666555444321 11 1222 23221
Q ss_pred CC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH----HHHHHHHHHHHHHHHHHHHhhccC
Q 018250 133 RL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE----TFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 133 ~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~----~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
.. ..++++|.|++ +.|+.-.. .+ ...|+... ............+|..-.+-|+||
T Consensus 168 l~~~~~~~FD~Il~--------DaPCSg~G---------~~---rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 227 (456)
T 3m4x_A 168 LVPHFSGFFDRIVV--------DAPCSGEG---------MF---RKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK 227 (456)
T ss_dssp HHHHHTTCEEEEEE--------ECCCCCGG---------GT---TTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred hhhhccccCCEEEE--------CCCCCCcc---------cc---ccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11 23578999987 23432111 00 01122211 011223334457888888999999
Q ss_pred ceeEEEecc
Q 018250 208 GLMVFSLIT 216 (359)
Q Consensus 208 G~lvl~~~g 216 (359)
|+|+.++..
T Consensus 228 G~LvYsTCs 236 (456)
T 3m4x_A 228 GQLIYSTCT 236 (456)
T ss_dssp EEEEEEESC
T ss_pred cEEEEEEee
Confidence 999987753
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0016 Score=59.88 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=65.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..++.++ +. .|...|+..|+-.......-+++..... -+...-|+.++.+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la--------~~-------~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~ 85 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAV--------KN-------QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI 85 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHH--------HT-------TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred CCCEEEEECCccHHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence 34799999999999999885 22 2345899999987776665555421000 1122234555666
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.|...+|+|++. .. | ..-+..+|....+-|+++|+||++-
T Consensus 86 ~~~~~~D~Ivia-----------gm----------G-------------------g~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 86 EKKDAIDTIVIA-----------GM----------G-------------------GTLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CGGGCCCEEEEE-----------EE----------C-------------------HHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CccccccEEEEe-----------CC----------c-------------------hHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 555568888751 00 0 0124457777778889999998875
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0019 Score=59.83 Aligned_cols=34 Identities=6% Similarity=-0.217 Sum_probs=25.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEN 107 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~N 107 (359)
.+.+|+|+|||+|..+..++ + .+ .+++..|+-..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll--------~--------~~-~~v~~veid~~ 105 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLF--------K--------YD-THIDFVQADEK 105 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHT--------T--------SS-CEEEEECSCHH
T ss_pred CCCEEEEEeCCcCHHHHHHH--------h--------CC-CEEEEEECCHH
Confidence 45799999999999887663 1 13 47888888653
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0031 Score=61.10 Aligned_cols=104 Identities=9% Similarity=-0.022 Sum_probs=65.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCC--
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRL-- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l-- 134 (359)
..+|+|+| |+|..++.+. .. .|..+|+..|+........-+.+..... -+..+.|++.+.+
T Consensus 173 ~~~VLDlG-G~G~~~~~la--------~~-------~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~ 236 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALM--------LS-------GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD 236 (373)
T ss_dssp TCEEEEES-CTTCHHHHHH--------HH-------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT
T ss_pred CCEEEEEC-CCCHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh
Confidence 47999999 9999998774 22 1345899999976555444333221000 1233345665522
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee-EEE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM-VFS 213 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l-vl~ 213 (359)
.+++++|+|+++..+|+. +...||+.-.+-|+|||++ +++
T Consensus 237 ~~~~~fD~Vi~~~p~~~~---------------------------------------~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 237 YALHKFDTFITDPPETLE---------------------------------------AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp TTSSCBSEEEECCCSSHH---------------------------------------HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred hccCCccEEEECCCCchH---------------------------------------HHHHHHHHHHHHcccCCeEEEEE
Confidence 134789999997554431 1256888888999999965 666
Q ss_pred ecc
Q 018250 214 LIT 216 (359)
Q Consensus 214 ~~g 216 (359)
+..
T Consensus 278 ~~~ 280 (373)
T 2qm3_A 278 ITR 280 (373)
T ss_dssp ECT
T ss_pred Eec
Confidence 643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0036 Score=61.05 Aligned_cols=111 Identities=10% Similarity=0.027 Sum_probs=65.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C--c-ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R--K-YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~--~-~~~~~vpgsfy 131 (359)
..+|+|+|||+|..|+.++. .. .-+|+..|+........-++... . . -|+. ++..
T Consensus 213 ~~~VLDl~cGtG~~sl~la~--------~g--------a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~---~D~~ 273 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAM--------GG--------AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV---MDVF 273 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHH--------TT--------BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE---SCHH
T ss_pred CCeEEEEeeccCHHHHHHHH--------CC--------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE---CCHH
Confidence 36899999999999998852 10 12788999887665554433211 1 1 1333 2333
Q ss_pred cCC--C--CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 132 GRL--F--PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 132 ~~l--~--p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+-+ + ...++|+|++. |+.... +++. ..+..+++..+++.-.+-|+||
T Consensus 274 ~~l~~~~~~~~~fD~Ii~D---------PP~~~~------~~~~--------------~~~~~~~~~~ll~~~~~~L~pg 324 (385)
T 2b78_A 274 DYFKYARRHHLTYDIIIID---------PPSFAR------NKKE--------------VFSVSKDYHKLIRQGLEILSEN 324 (385)
T ss_dssp HHHHHHHHTTCCEEEEEEC---------CCCC-----------C--------------CCCHHHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHhCCCccEEEEC---------CCCCCC------Chhh--------------HHHHHHHHHHHHHHHHHhcCCC
Confidence 211 1 14589999873 221110 0000 0113456777888888999999
Q ss_pred ceeEEEecc
Q 018250 208 GLMVFSLIT 216 (359)
Q Consensus 208 G~lvl~~~g 216 (359)
|+++++...
T Consensus 325 G~l~~~~~~ 333 (385)
T 2b78_A 325 GLIIASTNA 333 (385)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEeCC
Confidence 999988753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0034 Score=61.22 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C-c-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R-K-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~-~-~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+.++. . ...+|+..|+.......+-++... . . -|+. ++..+
T Consensus 218 ~~~VLDl~~G~G~~~~~la~--------~--------g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~---~d~~~ 278 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAI--------A--------GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV---GSAFE 278 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHH--------T--------TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHH
T ss_pred CCeEEEecCCCCHHHHHHHH--------C--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE---CCHHH
Confidence 46899999999999998852 1 123788888876444333322211 1 1 1222 34333
Q ss_pred CCC----CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 133 RLF----PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 133 ~l~----p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
.+. +.+++|+|++. .|..... ... .....+++..+|..-.+-|+|||
T Consensus 279 ~~~~~~~~~~~fD~Vi~d--------pP~~~~~----------------~~~-----~~~~~~~~~~~l~~~~~~LkpgG 329 (396)
T 2as0_A 279 EMEKLQKKGEKFDIVVLD--------PPAFVQH----------------EKD-----LKAGLRAYFNVNFAGLNLVKDGG 329 (396)
T ss_dssp HHHHHHHTTCCEEEEEEC--------CCCSCSS----------------GGG-----HHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHhhCCCCCEEEEC--------CCCCCCC----------------HHH-----HHHHHHHHHHHHHHHHHhcCCCc
Confidence 221 25789999973 2221100 011 12345678889999999999999
Q ss_pred eeEEEecc
Q 018250 209 LMVFSLIT 216 (359)
Q Consensus 209 ~lvl~~~g 216 (359)
+|+++...
T Consensus 330 ~lv~~~~~ 337 (396)
T 2as0_A 330 ILVTCSCS 337 (396)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99888753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.01 Score=55.46 Aligned_cols=70 Identities=7% Similarity=-0.021 Sum_probs=44.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|+.|+.++ ++. ...|+..|+-..-+..+-+++.. ..+ ..+-|+.. .
T Consensus 126 g~~VlD~~aG~G~~~i~~a--------~~g--------~~~V~avD~np~a~~~~~~N~~~N~v~~~v--~~~~~D~~-~ 186 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIA--------VYG--------KAKVIAIEKDPYTFKFLVENIHLNKVEDRM--SAYNMDNR-D 186 (278)
T ss_dssp TCEEEETTCTTTTTTHHHH--------HHT--------CCEEEEECCCHHHHHHHHHHHHHTTCTTTE--EEECSCTT-T
T ss_pred CCEEEEecCcCcHHHHHHH--------Hhc--------CCeEEEEECCHHHHHHHHHHHHHcCCCCcE--EEEeCcHH-H
Confidence 4789999999999999884 221 24899999977666665554421 122 11223432 2
Q ss_pred CCCCCceeEEEec
Q 018250 134 LFPKSTLHVVNSF 146 (359)
Q Consensus 134 l~p~~s~d~~~S~ 146 (359)
+.+.+.+|.|+.+
T Consensus 187 ~~~~~~~D~Vi~~ 199 (278)
T 3k6r_A 187 FPGENIADRILMG 199 (278)
T ss_dssp CCCCSCEEEEEEC
T ss_pred hccccCCCEEEEC
Confidence 3466788988753
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0019 Score=68.13 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=67.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C--c-ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R--K-YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~--~-~~~~~vpgsfy 131 (359)
..+|+|+|||||..|+.++ .. ..-+|+..|+.......+-+++.. . . -|+. ++.+
T Consensus 540 g~~VLDlg~GtG~~sl~aa--------~~--------ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~---~D~~ 600 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAG--------LG--------GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQ---ADCL 600 (703)
T ss_dssp TCEEEEESCTTCHHHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEE---SCHH
T ss_pred CCcEEEeeechhHHHHHHH--------HC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe---cCHH
Confidence 3589999999999998774 11 013688899877555444333210 1 1 1222 3433
Q ss_pred cCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+-+ ...+++|+|++. |+...... ....+ .+..+|...+++.-.+-|+|||+|
T Consensus 601 ~~l~~~~~~fD~Ii~D---------PP~f~~~~-------------~~~~~-----~~~~~~~~~ll~~a~~~LkpgG~L 653 (703)
T 3v97_A 601 AWLREANEQFDLIFID---------PPTFSNSK-------------RMEDA-----FDVQRDHLALMKDLKRLLRAGGTI 653 (703)
T ss_dssp HHHHHCCCCEEEEEEC---------CCSBC--------------------C-----CBHHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHHHhcCCCccEEEEC---------CccccCCc-------------cchhH-----HHHHHHHHHHHHHHHHhcCCCcEE
Confidence 322 245789999982 32211100 00000 124467778998889999999999
Q ss_pred EEEeccC
Q 018250 211 VFSLITG 217 (359)
Q Consensus 211 vl~~~g~ 217 (359)
++++..+
T Consensus 654 ~~s~~~~ 660 (703)
T 3v97_A 654 MFSNNKR 660 (703)
T ss_dssp EEEECCT
T ss_pred EEEECCc
Confidence 9888653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0028 Score=60.66 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=59.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+. +. ...+|+..|+.......+-+++.. +--++. ++..+
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~-----------------~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~---~D~~~ 254 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CK-----------------NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL---SDVRE 254 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TT-----------------TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCGGG
T ss_pred CCEEEEccCccCHHHHh-cc-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---CChHH
Confidence 46899999999999886 51 134899999876555544433211 111233 34444
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
-+ +++|++++. .|.... .|+..-.+-|+|||++++
T Consensus 255 ~~---~~fD~Vi~d--------pP~~~~----------------------------------~~l~~~~~~L~~gG~l~~ 289 (336)
T 2yx1_A 255 VD---VKGNRVIMN--------LPKFAH----------------------------------KFIDKALDIVEEGGVIHY 289 (336)
T ss_dssp CC---CCEEEEEEC--------CTTTGG----------------------------------GGHHHHHHHEEEEEEEEE
T ss_pred hc---CCCcEEEEC--------CcHhHH----------------------------------HHHHHHHHHcCCCCEEEE
Confidence 33 789999873 222110 255566778999999999
Q ss_pred EeccCC
Q 018250 213 SLITGP 218 (359)
Q Consensus 213 ~~~g~~ 218 (359)
......
T Consensus 290 ~~~~~~ 295 (336)
T 2yx1_A 290 YTIGKD 295 (336)
T ss_dssp EEEESS
T ss_pred EEeecC
Confidence 876544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0014 Score=59.56 Aligned_cols=73 Identities=15% Similarity=-0.018 Sum_probs=42.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..|..++ ++. .+++..|+.......+-+.+.. .--+.-+-+++.+..+|
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~--------~~~---------~~v~~id~~~~~~~~a~~~~~~-~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLA--------KIS---------KQVTSIELDSHLFNLSSEKLKL-NTRVTLIHQDILQFQFP 90 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHH--------HHS---------SEEEESSSSCSSSSSSSCTTTT-CSEEEECCSCCTTTTCC
T ss_pred CCCEEEEEeCCCCHHHHHHH--------HhC---------CeEEEEECCHHHHHHHHHHhcc-CCceEEEECChhhcCcc
Confidence 45789999999999999885 221 3788888766443221111110 00122234566655566
Q ss_pred C-CceeEEEecCc
Q 018250 137 K-STLHVVNSFNA 148 (359)
Q Consensus 137 ~-~s~d~~~S~~a 148 (359)
+ +++ .++|+--
T Consensus 91 ~~~~f-~vv~n~P 102 (245)
T 1yub_A 91 NKQRY-KIVGNIP 102 (245)
T ss_dssp CSSEE-EEEEECC
T ss_pred cCCCc-EEEEeCC
Confidence 3 677 6777643
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.015 Score=54.79 Aligned_cols=78 Identities=10% Similarity=-0.089 Sum_probs=51.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..|..+++ + ..+|+..|+-......+-+.+.. .. +.-+-|++.+-.+
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~--------~---------~~~V~aVEid~~li~~a~~~~~~~~~--v~vi~gD~l~~~~ 110 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAK--------N---------AKKVYVIEIDKSLEPYANKLKELYNN--IEIIWGDALKVDL 110 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------H---------SSEEEEEESCGGGHHHHHHHHHHCSS--EEEEESCTTTSCG
T ss_pred CcCEEEEECCCchHHHHHHHh--------c---------CCEEEEEECCHHHHHHHHHHhccCCC--eEEEECchhhCCc
Confidence 356899999999999999863 2 13677778776555544433311 11 1122346666567
Q ss_pred CCCceeEEEecCcccccC
Q 018250 136 PKSTLHVVNSFNAMHWLS 153 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs 153 (359)
|+.++|.++++...||-+
T Consensus 111 ~~~~fD~Iv~NlPy~is~ 128 (295)
T 3gru_A 111 NKLDFNKVVANLPYQISS 128 (295)
T ss_dssp GGSCCSEEEEECCGGGHH
T ss_pred ccCCccEEEEeCcccccH
Confidence 777899999998888843
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.017 Score=60.07 Aligned_cols=131 Identities=16% Similarity=0.132 Sum_probs=72.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEE
Q 018250 21 AHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVF 100 (359)
Q Consensus 21 ~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~ 100 (359)
-++..+|+++..++++++.+ .. ...+..+|+|+|||+|+.+...++..- +. .-.+.||
T Consensus 332 vKy~~Ye~AI~~Al~d~~~~--------~~---~~~~~~vVldVGaGrGpLv~~al~A~a----~~-------~~~vkVy 389 (637)
T 4gqb_A 332 IKYSQYQQAIYKCLLDRVPE--------EE---KDTNVQVLMVLGAGRGPLVNASLRAAK----QA-------DRRIKLY 389 (637)
T ss_dssp HHHHHHHHHHHHHHHHHSCG--------GG---TTTCEEEEEEESCTTSHHHHHHHHHHH----HT-------TCEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhh--------cc---ccCCCcEEEEECCCCcHHHHHHHHHHH----hc-------CCCcEEE
Confidence 46667777766555544321 11 024567899999999999776654322 11 1235778
Q ss_pred ecCCCCCchHHHHHhCCC--CcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCC
Q 018250 101 FNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFM 178 (359)
Q Consensus 101 ~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~ 178 (359)
..+-..|-.-++- .+.. -.--+.-|-|+..+--+| ..+|+++| -||-.. ..|.+ .
T Consensus 390 AVEknp~A~~a~~-~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVS----EwMG~f----------Ll~E~-------m 446 (637)
T 4gqb_A 390 AVEKNPNAVVTLE-NWQFEEWGSQVTVVSSDMREWVAP-EKADIIVS----ELLGSF----------ADNEL-------S 446 (637)
T ss_dssp EEESCHHHHHHHH-HHHHHTTGGGEEEEESCTTTCCCS-SCEEEEEC----CCCBTT----------BGGGC-------H
T ss_pred EEECCHHHHHHHH-HHHhccCCCeEEEEeCcceeccCC-cccCEEEE----EcCccc----------ccccC-------C
Confidence 8776443322211 1111 111133344566333344 78999999 565321 11221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 179 KGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 179 ~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+ ..|.+|-+=|||||+|+
T Consensus 447 l---------------evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 447 P---------------ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp H---------------HHHHHHGGGEEEEEEEE
T ss_pred H---------------HHHHHHHHhcCCCcEEc
Confidence 2 24668889999999974
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.053 Score=50.57 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=34.2
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhccC-cee
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRS-DFESILNARAEELVPG-GLM 210 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~-D~~~fL~~Ra~EL~pG-G~l 210 (359)
+.++++.+|+|+|..+.+ |-.+ +.+++.. ++ |+.-.+-|+|| |.|
T Consensus 134 ~~l~~~~~DlVlsD~apn--sG~~----------------------------~~D~~rs~~L---L~~a~~~LkpG~G~F 180 (277)
T 3evf_A 134 HRLEPVKCDTLLCDIGES--SSSS----------------------------VTEGERTVRV---LDTVEKWLACGVDNF 180 (277)
T ss_dssp TTSCCCCCSEEEECCCCC--CSCH----------------------------HHHHHHHHHH---HHHHHHHHTTCCSEE
T ss_pred hhcCCCCccEEEecCccC--cCch----------------------------HHHHHHHHHH---HHHHHHHhCCCCCeE
Confidence 347788999999988776 2211 1122211 22 66677889999 999
Q ss_pred EEEecc
Q 018250 211 VFSLIT 216 (359)
Q Consensus 211 vl~~~g 216 (359)
|+-.+-
T Consensus 181 V~KVf~ 186 (277)
T 3evf_A 181 CVKVLA 186 (277)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 998874
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=58.37 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=47.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C-CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P-RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~-~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..|..+++ + ..+|+..|+.......+-+... . .. +.-+.|++..-
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~--------~---------~~~v~~vDi~~~~~~~a~~~~~~~~~~~--v~~~~~D~~~~ 102 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLP--------L---------AKKVITIDIDSRMISEVKKRCLYEGYNN--LEVYEGDAIKT 102 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTT--------T---------SSEEEEECSCHHHHHHHHHHHHHTTCCC--EEC----CCSS
T ss_pred CcCEEEEEcCcCcHHHHHHHh--------c---------CCEEEEEECCHHHHHHHHHHHHHcCCCc--eEEEECchhhC
Confidence 356899999999999998841 1 2478888887655444333221 0 11 11223455443
Q ss_pred CCCCCceeEEEecCcccccC
Q 018250 134 LFPKSTLHVVNSFNAMHWLS 153 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs 153 (359)
|..++|+++++...||.+
T Consensus 103 --~~~~~D~Vv~n~py~~~~ 120 (299)
T 2h1r_A 103 --VFPKFDVCTANIPYKISS 120 (299)
T ss_dssp --CCCCCSEEEEECCGGGHH
T ss_pred --CcccCCEEEEcCCccccc
Confidence 334899999999988854
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0076 Score=55.57 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.2
Q ss_pred cceEEEeecCCCCcccHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~ 77 (359)
...+|+|+|||+|..|..+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~ 49 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLT 49 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTT
T ss_pred CcCEEEEEcccccHHHHHHHH
Confidence 356899999999999999864
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.004 Score=60.80 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=63.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-----C-CcccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-----P-RKYYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-----~-~~~~~~~vpgsfy 131 (359)
..+|+|+|||+|..|+.++. .. ..+|+..|+.......+-++.. . +--|+. ++..
T Consensus 221 ~~~VLDl~cG~G~~sl~la~--------~g--------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~---~D~~ 281 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALM--------GG--------CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR---DDVF 281 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHH--------TT--------CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE---SCHH
T ss_pred CCeEEEeeccCCHHHHHHHH--------CC--------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE---CCHH
Confidence 35899999999999998852 10 1378888887644433332221 0 111222 3433
Q ss_pred cCCC--C--CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 132 GRLF--P--KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 132 ~~l~--p--~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+.+. + ..++|+|++. .|..... ++.+ ....+++..++..-.+.|+||
T Consensus 282 ~~~~~~~~~~~~fD~Ii~d--------pP~~~~~-------~~~~--------------~~~~~~~~~~l~~~~~~Lkpg 332 (396)
T 3c0k_A 282 KLLRTYRDRGEKFDVIVMD--------PPKFVEN-------KSQL--------------MGACRGYKDINMLAIQLLNEG 332 (396)
T ss_dssp HHHHHHHHTTCCEEEEEEC--------CSSTTTC-------SSSS--------------SCCCTHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCCEEEEC--------CCCCCCC-------hhHH--------------HHHHHHHHHHHHHHHHhcCCC
Confidence 3221 1 4689999983 2221110 0000 001246667888888999999
Q ss_pred ceeEEEec
Q 018250 208 GLMVFSLI 215 (359)
Q Consensus 208 G~lvl~~~ 215 (359)
|+++++..
T Consensus 333 G~l~~~~~ 340 (396)
T 3c0k_A 333 GILLTFSC 340 (396)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEeC
Confidence 99998874
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.022 Score=56.49 Aligned_cols=132 Identities=11% Similarity=-0.052 Sum_probs=65.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCC--CCCCCceEEecCCCCCchHHHHHhCCCCcc---cccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLS--LPVPDFQVFFNDHTENDFNTLFRTLPPRKY---YAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~--~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~---~~~~vpgsfy~ 132 (359)
..+|+|.|||||...+.+...+.+ ...... ...+..+++..|+-.......-..+.-... -+.-+.|++..
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~----~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~ 247 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKG----QSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE 247 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHT----CC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT
T ss_pred CCEEeccCCCcchHHHHHHHHHHH----hcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCC
Confidence 468999999999998877644321 000000 000124788888865444332221110000 01111234433
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
... ...+|+|+++--++-....... +.+.......+. .-..||..-.+-|+|||++++
T Consensus 248 ~~~-~~~fD~Iv~NPPf~~~~~~~~~--------~~~~~~~~~~~~-------------~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 248 KEP-STLVDVILANPPFGTRPAGSVD--------INRPDFYVETKN-------------NQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp SCC-SSCEEEEEECCCSSCCCTTCCC--------CCCTTSSSCCSC-------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred Ccc-cCCcCEEEECCCCCCcccccch--------hhHhhcCCCCcc-------------hHHHHHHHHHHHhccCCEEEE
Confidence 332 3489999998444321111110 111111111111 123578888889999999999
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
.++
T Consensus 306 V~p 308 (445)
T 2okc_A 306 VLP 308 (445)
T ss_dssp EEE
T ss_pred EEC
Confidence 985
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.073 Score=54.31 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=69.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC--CC-CcccccccCcc-cccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL--PP-RKYYAAGVPGS-FHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l--~~-~~~~~~~vpgs-fy~~ 133 (359)
..+|+|.+||||...+.++..+.+.-.+............+++..|+-.......-.++ .. ..- +.-+.|+ +...
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~-i~i~~gDtL~~~ 323 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN-FGKKNADSFLDD 323 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB-CCSSSCCTTTSC
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc-cceeccchhcCc
Confidence 35999999999988777765543321111000000001358899888654433322221 11 100 1112344 3344
Q ss_pred CCCCCceeEEEecCcc---cccCCCCcccccccccccCCCc---eeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 134 LFPKSTLHVVNSFNAM---HWLSKTPKVNMLEKSLEWNQGS---IKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 134 l~p~~s~d~~~S~~al---HWLs~~p~~~~~~~~~~~n~g~---i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
.+++..+|+|+++=-+ .|-.. .+.+. +-|.-|. ... ..++.- ..|+ .|+.+-.+-|+||
T Consensus 324 ~~~~~~fD~Iv~NPPf~~~~~~~~---~~~~d--~r~~~g~~~~~~~-~~~~~~--------~~~~-~Fl~~~l~~Lk~g 388 (544)
T 3khk_A 324 QHPDLRADFVMTNPPFNMKDWWHE---KLADD--PRWTINTNGEKRI-LTPPTG--------NANF-AWMLHMLYHLAPT 388 (544)
T ss_dssp SCTTCCEEEEEECCCSSCCSCCCG---GGTTC--GGGEECCC--CEE-CCCCTT--------CTHH-HHHHHHHHTEEEE
T ss_pred ccccccccEEEECCCcCCccccch---hhhhh--hhhhcCccccccc-ccCCCc--------chhH-HHHHHHHHHhccC
Confidence 5678899999996322 25221 11100 0010010 000 011111 1122 4888889999999
Q ss_pred ceeEEEec
Q 018250 208 GLMVFSLI 215 (359)
Q Consensus 208 G~lvl~~~ 215 (359)
|++++.++
T Consensus 389 Gr~aiVlP 396 (544)
T 3khk_A 389 GSMALLLA 396 (544)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEec
Confidence 99999985
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0039 Score=63.91 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=51.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC---CC-CcccccccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL---PP-RKYYAAGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l---~~-~~~~~~~vpgsfy 131 (359)
..+.||||+|||.|..|..++ +. ..+|+.-|+....-...-..- +. .--|..+ +..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la--------~~---------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~---~~~ 124 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLA--------SK---------GATIVGIDFQQENINVCRALAEENPDFAAEFRVG---RIE 124 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEEC---CHH
T ss_pred CCCCeEEEECCCCcHHHHHHH--------hC---------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEEC---CHH
Confidence 346899999999999998884 22 358999999876544322111 11 1113332 332
Q ss_pred cC--CCCCCceeEEEecCcccccCC
Q 018250 132 GR--LFPKSTLHVVNSFNAMHWLSK 154 (359)
Q Consensus 132 ~~--l~p~~s~d~~~S~~alHWLs~ 154 (359)
+. .++++++|+|+|.-.||++.+
T Consensus 125 ~~~~~~~~~~fD~v~~~e~~ehv~~ 149 (569)
T 4azs_A 125 EVIAALEEGEFDLAIGLSVFHHIVH 149 (569)
T ss_dssp HHHHHCCTTSCSEEEEESCHHHHHH
T ss_pred HHhhhccCCCccEEEECcchhcCCC
Confidence 22 256789999999999999653
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0095 Score=54.22 Aligned_cols=75 Identities=16% Similarity=0.020 Sum_probs=47.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..|..+++ +. .+|+..|+.......+-+.+.. .. +.-+-|++.+-.+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~--------~~---------~~v~~vD~~~~~~~~a~~~~~~~~~--v~~~~~D~~~~~~ 90 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQ--------RC---------NFVTAIEIDHKLCKTTENKLVDHDN--FQVLNKDILQFKF 90 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------HS---------SEEEEECSCHHHHHHHHHHTTTCCS--EEEECCCGGGCCC
T ss_pred CCCEEEEEeCCchHHHHHHHH--------cC---------CeEEEEECCHHHHHHHHHhhccCCC--eEEEEChHHhCCc
Confidence 356899999999999998852 21 3788888876555554444432 11 1223356666556
Q ss_pred CC-CceeEEEecCcccc
Q 018250 136 PK-STLHVVNSFNAMHW 151 (359)
Q Consensus 136 p~-~s~d~~~S~~alHW 151 (359)
|+ .++ .++|+...+|
T Consensus 91 ~~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 91 PKNQSY-KIFGNIPYNI 106 (244)
T ss_dssp CSSCCC-EEEEECCGGG
T ss_pred ccCCCe-EEEEeCCccc
Confidence 64 345 5777766665
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.026 Score=59.19 Aligned_cols=110 Identities=16% Similarity=0.065 Sum_probs=57.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceE
Q 018250 20 YAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQV 99 (359)
Q Consensus 20 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v 99 (359)
..++..+|+.+..+++++..+ ..+...|+|+|||+|+.+...+...-.+ ..+++.. .....+.|
T Consensus 386 ~vRy~~Y~~AI~~al~d~~~~--------------~~~~~VVldVGaGtGpLs~~al~A~~~a-~~~~~~~-~~~~~~kV 449 (745)
T 3ua3_A 386 QIKYDVYGEAVVGALKDLGAD--------------GRKTVVIYLLGGGRGPIGTKILKSEREY-NNTFRQG-QESLKVKL 449 (745)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------------CCSEEEEEEESCTTCHHHHHHHHHHHHH-HHHHSTT-SCCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHhhcc--------------cCCCcEEEEECCCCCHHHHHHHHHHHHh-Ccccccc-ccccccEE
Confidence 345566666665554444311 1346789999999999987665433211 1111110 11234688
Q ss_pred EecCCCCCchHHHHHhCCC-CcccccccCcccccCCCC-----CCceeEEEe
Q 018250 100 FFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLFP-----KSTLHVVNS 145 (359)
Q Consensus 100 ~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~p-----~~s~d~~~S 145 (359)
|..+--.|-.-++-+...+ -.--+.-|.|...+--+| +..+|+++|
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVS 501 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVS 501 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEE
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEE
Confidence 8888855444443322211 000122233444333344 688999999
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.065 Score=52.96 Aligned_cols=69 Identities=19% Similarity=0.053 Sum_probs=40.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..|+.++. . ..+|+..|+........-++......-+.-+.++..+ +++.
T Consensus 291 ~~~VLDlgcG~G~~sl~la~--------~---------~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~-~~~~ 352 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAK--------R---------GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDRE-VSVK 352 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTT-CCCT
T ss_pred CCEEEEeeccchHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHH-cCcc
Confidence 46899999999999998852 1 1378888887655443333221100002222235433 3343
Q ss_pred CceeEEEe
Q 018250 138 STLHVVNS 145 (359)
Q Consensus 138 ~s~d~~~S 145 (359)
++|++++
T Consensus 353 -~fD~Vv~ 359 (425)
T 2jjq_A 353 -GFDTVIV 359 (425)
T ss_dssp -TCSEEEE
T ss_pred -CCCEEEE
Confidence 8999988
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.082 Score=51.46 Aligned_cols=89 Identities=11% Similarity=-0.019 Sum_probs=49.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHH-----------------------HHHHHHhhcCCCCCCCceEEecCCCCCchHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNII-----------------------EALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF 113 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii-----------------------~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 113 (359)
...+|+|.|||||..++.++.... +.+++.........++.+|+..|+-.......-
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 357899999999999888764321 112221111111234568999999776655443
Q ss_pred HhCCCC--cccccccCcccccCCCCCCceeEEEec
Q 018250 114 RTLPPR--KYYAAGVPGSFHGRLFPKSTLHVVNSF 146 (359)
Q Consensus 114 ~~l~~~--~~~~~~vpgsfy~~l~p~~s~d~~~S~ 146 (359)
.++... .-.+.-.-+++.+.. ++.++|+|+|+
T Consensus 275 ~Na~~~gl~~~i~~~~~D~~~l~-~~~~~D~Iv~N 308 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDATQFK-SEDEFGFIITN 308 (385)
T ss_dssp HHHHHHTCGGGEEEEECCGGGCC-CSCBSCEEEEC
T ss_pred HHHHHcCCCCceEEEECChhhcC-cCCCCcEEEEC
Confidence 333210 001222234665543 44689999984
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.31 Score=52.02 Aligned_cols=124 Identities=15% Similarity=-0.031 Sum_probs=69.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHH--HHhCCC----Ccc-cccccCcc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTL--FRTLPP----RKY-YAAGVPGS 129 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l--f~~l~~----~~~-~~~~vpgs 129 (359)
...+|+|.|||||...+.++ +..+. ....+++..|+-....... -..+.. ... ......++
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA--------~~l~e----i~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD 388 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVS--------AGFNN----VMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGED 388 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHH--------HTSTT----CCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCC
T ss_pred CCCEEEECCCCccHHHHHHH--------HHhcc----cCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecc
Confidence 45799999999999887764 22211 1236899999877554433 112211 000 00111344
Q ss_pred cccC-CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHH--------------HHH
Q 018250 130 FHGR-LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRS--------------DFE 194 (359)
Q Consensus 130 fy~~-l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~--------------D~~ 194 (359)
|... ..+...+|+|+++ |+-... ...+...+.|...+.. -..
T Consensus 389 ~L~~~~~~~~kFDVVIgN---------PPYg~~--------------~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~ 445 (878)
T 3s1s_A 389 VCSLNPEDFANVSVVVMN---------PPYVSG--------------VTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEA 445 (878)
T ss_dssp GGGCCGGGGTTEEEEEEC---------CBCCSS--------------CCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHH
T ss_pred hhcccccccCCCCEEEEC---------CCcccc--------------ccchhhhhhHHHHhhhhccccccccccccchHH
Confidence 5432 2456789999993 443211 0112222222221111 255
Q ss_pred HHHHHHHHhhccCceeEEEec
Q 018250 195 SILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.|+..-.+-|+|||++++.++
T Consensus 446 aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 446 LFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp HHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEEC
Confidence 689988999999999999996
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.063 Score=54.80 Aligned_cols=130 Identities=11% Similarity=0.032 Sum_probs=69.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--CCcc-cccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--PRKY-YAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~~~~-~~~~vpgsfy~~ 133 (359)
...+|+|.+||||...+.+++.+ +. ....+++..|+-...+.-.-.++- .-.+ -+.-..|++...
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l--------~~----~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~ 288 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYS--------RQ----PQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDE 288 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHC--------SC----TTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTS
T ss_pred CCCEEeecccchhHHHHHHHHHH--------Hh----ccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecc
Confidence 46799999999999888775321 11 124688999886644433222210 0000 001112344443
Q ss_pred ---CCCCCceeEEEec--CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC
Q 018250 134 ---LFPKSTLHVVNSF--NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV-PG 207 (359)
Q Consensus 134 ---l~p~~s~d~~~S~--~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~-pG 207 (359)
.++...+|+|+++ |...|-.. .....+.....| |. .++. ...|+ .|+.+-.+-|+ ||
T Consensus 289 d~p~~~~~~fD~IvaNPPf~~~~~~~-~~~~~d~rf~~~--G~-----~~~~--------s~~~~-~Fl~~~l~~Lk~~g 351 (542)
T 3lkd_A 289 DWPTQEPTNFDGVLMNPPYSAKWSAS-SGFMDDPRFSPF--GK-----LAPK--------SKADF-AFLLHGYYHLKQDN 351 (542)
T ss_dssp CSCCSSCCCBSEEEECCCTTCCCCCC-GGGGGSTTTGGG--SS-----CCCT--------TCCHH-HHHHHHHHTBCTTT
T ss_pred cccccccccccEEEecCCcCCccccc-hhhhhhhhhhhh--hh-----cCCC--------chhhH-HHHHHHHHHhCCCc
Confidence 2567899999997 44455211 000111000000 10 0110 01133 48888889999 99
Q ss_pred ceeEEEec
Q 018250 208 GLMVFSLI 215 (359)
Q Consensus 208 G~lvl~~~ 215 (359)
|++++.++
T Consensus 352 Gr~a~VlP 359 (542)
T 3lkd_A 352 GVMAIVLP 359 (542)
T ss_dssp CEEEEEEE
T ss_pred eeEEEEec
Confidence 99999986
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.068 Score=49.64 Aligned_cols=73 Identities=12% Similarity=-0.063 Sum_probs=45.2
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCC-
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKS- 138 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~- 138 (359)
+|+|+|||+|..|..+++ + ..+|+..|+-......+-+.++... +.-+-|++++--+++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~--------~---------~~~V~avEid~~~~~~l~~~~~~~~--v~vi~~D~l~~~~~~~~ 109 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLE--------A---------GAEVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYPWEEVP 109 (271)
T ss_dssp CEEEECCTTSHHHHHHHH--------T---------TCCEEEEESCGGGHHHHHHHTTTSS--EEEEESCGGGSCGGGSC
T ss_pred eEEEEeCchHHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHhcCCCC--EEEEECChhhCChhhcc
Confidence 999999999999998852 2 1367888887766555544444211 1222346655545432
Q ss_pred ceeEEEecCcccc
Q 018250 139 TLHVVNSFNAMHW 151 (359)
Q Consensus 139 s~d~~~S~~alHW 151 (359)
..|.+++|.-.+.
T Consensus 110 ~~~~iv~NlPy~i 122 (271)
T 3fut_A 110 QGSLLVANLPYHI 122 (271)
T ss_dssp TTEEEEEEECSSC
T ss_pred CccEEEecCcccc
Confidence 5677777654443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.11 Score=48.56 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=57.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc------ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK------YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~------~~~~~vpgsfy 131 (359)
..+|+|||||.|..|..++. + .+...++-.|+-.+. ....++-.. ++..++ +.
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~--------~-------~gv~sV~GvdvG~d~---~~~pi~~~~~g~~ii~~~~~~--dv- 149 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAAS--------L-------KNVKKVMAFTLGVQG---HEKPIMRTTLGWNLIRFKDKT--DV- 149 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHT--------S-------TTEEEEEEECCCCTT---SCCCCCCCBTTGGGEEEECSC--CG-
T ss_pred CCEEEEeCCCCCHHHHHHHH--------h-------cCCCeeeeEEeccCc---cccccccccCCCceEEeeCCc--ch-
Confidence 45899999999999987641 1 122345556665431 000011000 011111 22
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhccC--c
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRS-DFESILNARAEELVPG--G 208 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~-D~~~fL~~Ra~EL~pG--G 208 (359)
.-+++..+|+|.|-.|.+ |-.+ +.+|+.. ++ |..-.+-|+|| |
T Consensus 150 -~~l~~~~~DvVLSDmApn--sG~~----------------------------~~D~~rs~~L---L~~A~~~Lk~g~~G 195 (282)
T 3gcz_A 150 -FNMEVIPGDTLLCDIGES--SPSI----------------------------AVEEQRTLRV---LNCAKQWLQEGNYT 195 (282)
T ss_dssp -GGSCCCCCSEEEECCCCC--CSCH----------------------------HHHHHHHHHH---HHHHHHHHHHHCCC
T ss_pred -hhcCCCCcCEEEecCccC--CCCh----------------------------HHHHHHHHHH---HHHHHHHcCCCCCC
Confidence 135778899999876655 2111 1222221 23 66667889999 9
Q ss_pred eeEEEecc
Q 018250 209 LMVFSLIT 216 (359)
Q Consensus 209 ~lvl~~~g 216 (359)
.||+=.+-
T Consensus 196 ~Fv~KvF~ 203 (282)
T 3gcz_A 196 EFCIKVLC 203 (282)
T ss_dssp EEEEEESC
T ss_pred cEEEEEec
Confidence 99998874
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.13 Score=50.71 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=41.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG- 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~- 132 (359)
..+|+|+|||+|..|+.++.. ..+|+..|.........-++... +--|..+ +..+
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~-----------------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~---d~~~~ 346 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQ-----------------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE---NLEED 346 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTT-----------------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC---CTTSC
T ss_pred CCEEEECCCCCCHHHHHHHhh-----------------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEC---CHHHH
Confidence 468999999999999988521 23677777765444333222210 1123332 3333
Q ss_pred ---CCCCCCceeEEEe
Q 018250 133 ---RLFPKSTLHVVNS 145 (359)
Q Consensus 133 ---~l~p~~s~d~~~S 145 (359)
..++++++|++++
T Consensus 347 l~~~~~~~~~fD~Vv~ 362 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLL 362 (433)
T ss_dssp CSSSGGGTTCCSEEEE
T ss_pred hhhhhhhcCCCCEEEE
Confidence 2256789999998
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.059 Score=52.59 Aligned_cols=88 Identities=7% Similarity=-0.125 Sum_probs=48.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHH-----------------------HHHHHhhcCCCCCCCceEEecCCCCCchHHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIE-----------------------ALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFR 114 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~-----------------------~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~ 114 (359)
...|+|.+||||...+..+....+ .+++.........++.+++..|.-.......-+
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 478999999999988877643221 122211111112344679999987766555444
Q ss_pred hCCCC--cccccccCcccccCCCCCCceeEEEec
Q 018250 115 TLPPR--KYYAAGVPGSFHGRLFPKSTLHVVNSF 146 (359)
Q Consensus 115 ~l~~~--~~~~~~vpgsfy~~l~p~~s~d~~~S~ 146 (359)
++... .-.+.-+-+++.+... +.++|+|+|+
T Consensus 275 Na~~~gl~~~I~~~~~D~~~l~~-~~~fD~Iv~N 307 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQDFKT-NKINGVLISN 307 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGGCCC-CCCSCEEEEC
T ss_pred HHHHcCCCCceEEEECChHHCCc-cCCcCEEEEC
Confidence 33210 0011122246655444 4589999984
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.071 Score=52.12 Aligned_cols=89 Identities=8% Similarity=-0.129 Sum_probs=49.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHH-----------------------HHHHHHhhcCCCCCCCceEEecCCCCCchHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNII-----------------------EALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF 113 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii-----------------------~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 113 (359)
...+|+|.|||||...+..+.... +.+++.........++.+++..|+-.......-
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 347899999999998887764322 112221111111234568999998876655544
Q ss_pred HhCCCC--cccccccCcccccCCCCCCceeEEEec
Q 018250 114 RTLPPR--KYYAAGVPGSFHGRLFPKSTLHVVNSF 146 (359)
Q Consensus 114 ~~l~~~--~~~~~~vpgsfy~~l~p~~s~d~~~S~ 146 (359)
.++... .-.+.-+-+++.+... +.++|+|+|+
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~-~~~fD~Iv~N 314 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQT-EDEYGVVVAN 314 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCC-CCCSCEEEEC
T ss_pred HHHHHcCCCCceEEEECChHhCCC-CCCCCEEEEC
Confidence 433210 0011122246655444 4589999984
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.024 Score=55.19 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=30.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT 115 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~ 115 (359)
..+|+|+|||+|..++.++ ++. +...|+.+|+-..-...+-++
T Consensus 48 ~~~VLDl~aGtG~~~l~~a--------~~~-------~~~~V~avDi~~~av~~a~~N 90 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFA--------LET-------PAEEVWLNDISEDAYELMKRN 90 (378)
T ss_dssp CSEEEESSCTTSHHHHHHH--------HHS-------SCSEEEEEESCHHHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHH--------HhC-------CCCeEEEEECCHHHHHHHHHH
Confidence 3689999999999999885 221 235799999876555444433
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.17 Score=47.68 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=44.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|.-|+.+++ ... +.-+|+.+|+-......+-+++.. .. +..+-+++.+..
T Consensus 103 g~~VLDlcaG~G~kt~~la~--------~~~------~~g~V~a~D~~~~~l~~~~~n~~r~g~~~--v~~~~~D~~~~~ 166 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAA--------LLK------NQGKIFAFDLDAKRLASMATLLARAGVSC--CELAEEDFLAVS 166 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHH--------HHT------TCSEEEEEESCHHHHHHHHHHHHHTTCCS--EEEEECCGGGSC
T ss_pred CCEEEEeCCChhHHHHHHHH--------HhC------CCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCChHhcC
Confidence 46899999999999998853 221 235899999987766666554421 11 112223443322
Q ss_pred CCC---CceeEEEe
Q 018250 135 FPK---STLHVVNS 145 (359)
Q Consensus 135 ~p~---~s~d~~~S 145 (359)
... .++|.|+.
T Consensus 167 ~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 167 PSDPRYHEVHYILL 180 (309)
T ss_dssp TTCGGGTTEEEEEE
T ss_pred ccccccCCCCEEEE
Confidence 211 57899987
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.2 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.5
Q ss_pred HHHHHHHHhhccCceeEEEec
Q 018250 195 SILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.|+..-.+-|+|||++++.++
T Consensus 293 ~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 293 CFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEec
Confidence 578888889999999999985
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.25 Score=48.28 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=31.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL 116 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l 116 (359)
..+|+|++||+|..++.+++ +.+ ...+|+.+|+-..-...+-+++
T Consensus 53 g~~VLDlfaGtG~~sl~aa~--------~~~------ga~~V~avDi~~~av~~~~~N~ 97 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLL--------ETS------CVEKAYANDISSKAIEIMKENF 97 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHH--------HCS------CEEEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEECCCcccHHHHHHHH--------hCC------CCCEEEEEECCHHHHHHHHHHH
Confidence 47899999999999998852 211 0147888998765555554443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.02 Score=52.41 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=28.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTL 112 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l 112 (359)
...+|+|+|||+|..|..+++ + +..+|+.-|+-......+
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~--------~--------~~~~v~avEid~~~~~~~ 70 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQ--------H--------PLKKLYVIELDREMVENL 70 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTT--------S--------CCSEEEEECCCHHHHHHH
T ss_pred CcCEEEEEcCchHHHHHHHHH--------c--------CCCeEEEEECCHHHHHHH
Confidence 356899999999999998841 1 135788888876444433
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=91.36 E-value=0.2 Score=45.75 Aligned_cols=78 Identities=13% Similarity=-0.107 Sum_probs=42.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..|. +. +. +..+|+..|+-......+-+.+.. .. +.-+-|++..--+|
T Consensus 22 ~~~VLEIG~G~G~lt~-l~---------~~-------~~~~v~avEid~~~~~~a~~~~~~~~~--v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 22 GQAMVEIGPGLAALTE-PV---------GE-------RLDQLTVIELDRDLAARLQTHPFLGPK--LTIYQQDAMTFNFG 82 (252)
T ss_dssp TCCEEEECCTTTTTHH-HH---------HT-------TCSCEEEECCCHHHHHHHHTCTTTGGG--EEEECSCGGGCCHH
T ss_pred cCEEEEECCCCcHHHH-hh---------hC-------CCCeEEEEECCHHHHHHHHHHhccCCc--eEEEECchhhCCHH
Confidence 4689999999999999 51 11 112477777766444433333321 11 11222455433232
Q ss_pred C-----CceeEEEecCc--------ccccCC
Q 018250 137 K-----STLHVVNSFNA--------MHWLSK 154 (359)
Q Consensus 137 ~-----~s~d~~~S~~a--------lHWLs~ 154 (359)
+ +..+.++|+.. +|||..
T Consensus 83 ~~~~~~~~~~~vvsNlPY~i~~~il~~ll~~ 113 (252)
T 1qyr_A 83 ELAEKMGQPLRVFGNLPYNISTPLMFHLFSY 113 (252)
T ss_dssp HHHHHHTSCEEEEEECCTTTHHHHHHHHHTT
T ss_pred HhhcccCCceEEEECCCCCccHHHHHHHHhc
Confidence 2 23578888765 566654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.57 Score=44.03 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=58.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--C----cc--cccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--R----KY--YAAGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~----~~--~~~~vp 127 (359)
....+|+|||||+|..|..+++ +. +-..|+..|+..++- ..|. . .. +-.++
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~--------~~-------gv~sV~Gvdlg~~~~-----~~P~~~~~~~~~iv~~~~~~- 138 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAA--------QK-------EVMSVKGYTLGIEGH-----EKPIHMQTLGWNIVKFKDKS- 138 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHT--------ST-------TEEEEEEECCCCTTS-----CCCCCCCBTTGGGEEEECSC-
T ss_pred CCCCEEEEcCCCCCHHHHHHHH--------hc-------CCceeeeEEeccccc-----cccccccccCCceEEeecCc-
Confidence 3468999999999999998852 11 123566667754320 0110 0 00 11111
Q ss_pred cccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhcc
Q 018250 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRS-DFESILNARAEELVP 206 (359)
Q Consensus 128 gsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~-D~~~fL~~Ra~EL~p 206 (359)
+++ -++...+|+++|.-|-+ |-.+ +.+|+.. ++ |..-.+-|+|
T Consensus 139 -di~--~l~~~~~DlVlsD~APn--sG~~----------------------------~~D~~rs~~L---L~~A~~~Lkp 182 (300)
T 3eld_A 139 -NVF--TMPTEPSDTLLCDIGES--SSNP----------------------------LVERDRTMKV---LENFERWKHV 182 (300)
T ss_dssp -CTT--TSCCCCCSEEEECCCCC--CSSH----------------------------HHHHHHHHHH---HHHHHHHCCT
T ss_pred -eee--ecCCCCcCEEeecCcCC--CCCH----------------------------HHHHHHHHHH---HHHHHHHhcC
Confidence 221 24667888888866544 2111 1122221 23 6777788999
Q ss_pred C-ceeEEEecc
Q 018250 207 G-GLMVFSLIT 216 (359)
Q Consensus 207 G-G~lvl~~~g 216 (359)
| |.||+-.+-
T Consensus 183 G~G~FV~KvF~ 193 (300)
T 3eld_A 183 NTENFCVKVLA 193 (300)
T ss_dssp TCCEEEEEESS
T ss_pred CCCcEEEEecc
Confidence 9 999998874
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.049 Score=50.77 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=17.7
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
...+|+|+|||+|..|..++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La 61 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVI 61 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHH
T ss_pred CcCEEEEEccccHHHHHHHH
Confidence 35789999999999999885
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=90.25 E-value=1.8 Score=40.32 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=17.2
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
.+-+|+++||+.|..++.+.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma 125 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMR 125 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHH
T ss_pred CCCcEEEeecCchHHHHHHH
Confidence 46799999999999888764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=90.18 E-value=0.47 Score=44.08 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 188 QFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 188 Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.+..++..+++.-.+-|+|||.+++...
T Consensus 71 ~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 71 AFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 3445566778888899999999999875
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.76 Score=48.21 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~ 77 (359)
..+|+|.+||||...+..+.
T Consensus 191 ~~~llDP~CGSGt~lIeAa~ 210 (703)
T 3v97_A 191 GTPLLDPMCGSGTLLIEAAM 210 (703)
T ss_dssp TSCEEETTCTTSHHHHHHHH
T ss_pred CCeEEecCCCCcHHHHHHHH
Confidence 46799999999999887754
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=85.77 E-value=4.8 Score=37.88 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND 108 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND 108 (359)
..+|+|||||+|..|.-.+ .. ..--.|+.-|+-.++
T Consensus 95 ~~~VlDLGaapGGwsq~~~--------~~-------~gv~~V~avdvG~~~ 130 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMA--------TQ-------KRVQEVRGYTKGGPG 130 (321)
T ss_dssp CEEEEEETCTTCHHHHHHT--------TC-------TTEEEEEEECCCSTT
T ss_pred CCEEEEeCCCCCcHHHHHH--------hh-------cCCCEEEEEEcCCCC
Confidence 3499999999999998553 11 111369999998764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=85.33 E-value=1.7 Score=40.03 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=17.6
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~ 76 (359)
....+|+||||+.|.=|.-.+
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa 92 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAA 92 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHT
T ss_pred CCCCEEEEcCCCCCHHHHHHh
Confidence 346899999999999888774
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.62 E-value=5.1 Score=37.42 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.3
Q ss_pred HHHHHHHHhhccCceeEEEecc
Q 018250 195 SILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
.|++..++-|+|||+|+.....
T Consensus 179 eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 179 AFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEecCC
Confidence 3788889999999999987643
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.99 E-value=0.49 Score=43.39 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNI 79 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~i 79 (359)
.+..+|+|+|||+|.|++.+++..
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~ 82 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAF 82 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999987543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=2.3 Score=41.14 Aligned_cols=72 Identities=13% Similarity=-0.030 Sum_probs=47.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
.-.+++||||++|.-|..++ ++ ...|+..|.-.-|- -....+ + +.-+-++.+....+
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~--------~r---------g~~V~aVD~~~l~~--~l~~~~-~---V~~~~~d~~~~~~~ 267 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLV--------KR---------NMWVYSVDNGPMAQ--SLMDTG-Q---VTWLREDGFKFRPT 267 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHH--------HT---------TCEEEEECSSCCCH--HHHTTT-C---EEEECSCTTTCCCC
T ss_pred CCCEEEEeCcCCCHHHHHHH--------HC---------CCEEEEEEhhhcCh--hhccCC-C---eEEEeCccccccCC
Confidence 35799999999999998875 22 24899999754331 111112 1 12223466666677
Q ss_pred CCceeEEEecCcccc
Q 018250 137 KSTLHVVNSFNAMHW 151 (359)
Q Consensus 137 ~~s~d~~~S~~alHW 151 (359)
.+.+|+++|-.+.+|
T Consensus 268 ~~~~D~vvsDm~~~p 282 (375)
T 4auk_A 268 RSNISWMVCDMVEKP 282 (375)
T ss_dssp SSCEEEEEECCSSCH
T ss_pred CCCcCEEEEcCCCCh
Confidence 788999999666555
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=82.39 E-value=1.9 Score=36.37 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=25.2
Q ss_pred ceEEEeecCCCCc-ccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 58 TVRIADLGCSVGP-NTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 58 ~~~IaDlGCs~G~-nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
..+|+|+|||.|. ++..+. +. ..+.|+..|+-.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La--------~~--------~g~~V~atDInp 69 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIR--------KH--------SKVDLVLTDIKP 69 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHH--------HH--------SCCEEEEECSSC
T ss_pred CCcEEEEccCCChHHHHHHH--------Hh--------CCCeEEEEECCc
Confidence 4799999999995 988884 22 146888888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 359 | ||||
| d1m6ex_ | 359 | c.66.1.35 (X:) Salicylic acid carboxyl methyltrans | 1e-100 |
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Score = 299 bits (766), Expect = e-100
Identities = 119/372 (31%), Positives = 176/372 (47%), Gaps = 33/372 (8%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M V +V M GG G SYA NS QR + K + AI + + +
Sbjct: 1 MDVRQV--LHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDT----VTTRLA 54
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLS-LPVPDFQVFFNDHTENDFNTLFRTLPP- 118
IADLGCS GPN +V +I+ +E + + P++Q+F ND NDFN +FR+LP
Sbjct: 55 IADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE 114
Query: 119 ----RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSI-K 173
+ GVPGSF+GRLFP++TLH ++S ++ WLS+ P +E N+G+I
Sbjct: 115 NDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPI------GIESNKGNIYM 168
Query: 174 CTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYN 233
+ V + QF+ D L RA+E+VPGG MV +++ S T +
Sbjct: 169 ANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRA-STECCLIWQ 227
Query: 234 FLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHK 293
L L + G+I EEK FN+P Y P E+E+ I + G F ++ ++ +
Sbjct: 228 LLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSC 287
Query: 294 TFP----------AQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKL 343
T +RAV E L+ HFGE ++E++F+ E +S K
Sbjct: 288 TKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKF 347
Query: 344 HKEIEVFVVLKR 355
I V V L R
Sbjct: 348 ---INVIVSLIR 356
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 359 | |||
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 100.0 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.48 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.43 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.43 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.38 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.37 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.37 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.34 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.33 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.32 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.3 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.29 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.25 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.24 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.2 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.18 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.15 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.12 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.06 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.05 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.02 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.02 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.96 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.93 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.9 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.89 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.87 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.85 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.85 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.7 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.56 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.53 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.53 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.43 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.43 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.38 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.38 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.36 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.36 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.23 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.21 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.19 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.16 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.15 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.11 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.09 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.07 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.95 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 97.74 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.73 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.68 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.6 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.6 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 97.48 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.32 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.25 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.01 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 96.59 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 96.55 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 96.5 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 96.38 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 96.32 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 95.85 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 95.67 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 95.6 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 95.46 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 95.4 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 95.12 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 94.99 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 94.87 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 94.59 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 93.71 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 92.88 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 92.56 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 91.65 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 90.59 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 90.57 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 89.86 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 88.96 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 88.35 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.31 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.63 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 87.61 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 87.34 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 85.34 |
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=100.00 E-value=1.3e-97 Score=724.38 Aligned_cols=340 Identities=34% Similarity=0.532 Sum_probs=308.6
Q ss_pred ccc-eeeeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHH
Q 018250 4 DEV-VTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEA 82 (359)
Q Consensus 4 ~~~-~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~ 82 (359)
|++ ++|||+||+|++||++||.+|++++..++|+|++||.+++.... .+++++|||||||+|+||+.+|+.||++
T Consensus 1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~----~~~~~~IADlGCS~G~Ntl~~v~~iI~~ 76 (359)
T d1m6ex_ 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDT----VTTRLAIADLGCSSGPNALFAVTELIKT 76 (359)
T ss_dssp CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSS----SSSEECCEEESCCSSTTTTTGGGTTHHH
T ss_pred CCccEeeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----CCCceEEEEeCCCCCccHHHHHHHHHHH
Confidence 556 78999999999999999999999999999999999999764332 3678999999999999999999999999
Q ss_pred HHHHhhcCCC-CCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCcccccCCCCCCceeEEEecCcccccCCCC
Q 018250 83 LEFKFQNLSL-PVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTP 156 (359)
Q Consensus 83 ~~~~~~~~~~-~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p 156 (359)
|+++|++.+. +.|+|||+|||||+||||+||++||. ..||++|||||||+||||++|+||+||++||||||++|
T Consensus 77 i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP 156 (359)
T d1m6ex_ 77 VEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP 156 (359)
T ss_dssp HHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCC
T ss_pred HHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCC
Confidence 9999987543 57999999999999999999999986 46999999999999999999999999999999999999
Q ss_pred cccccccccccCCCceeecC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHH
Q 018250 157 KVNMLEKSLEWNQGSIKCTR-FMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFL 235 (359)
Q Consensus 157 ~~~~~~~~~~~n~g~i~~~~-~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l 235 (359)
+.+.+ |+|+||+.+ ++++|.+||++||++||.+||++||+||+|||+||++++||++.++.+ ++.+.+|++|
T Consensus 157 ~~l~~------n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~-~~~~~~~~~l 229 (359)
T d1m6ex_ 157 IGIES------NKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAS-TECCLIWQLL 229 (359)
T ss_dssp SCCCC------CTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSS-TTTSTTTHHH
T ss_pred ccccC------CCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCC-CccchHHHHH
Confidence 98764 888999875 589999999999999999999999999999999999999999877654 3456789999
Q ss_pred HHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCC-CCC---------CChhHHHHHHH
Q 018250 236 GSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMR-HKT---------FPAQFYLSHLR 305 (359)
Q Consensus 236 ~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~-~~~---------~~~~~v~~~iR 305 (359)
.++|++||.||+|++|++|+||+|+|+||.+|++++|+++|+|+|+++|.++.+.. +.+ ..++.+++++|
T Consensus 230 ~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~R 309 (359)
T d1m6ex_ 230 AMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMR 309 (359)
T ss_dssp HHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeecccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999864311 110 24578999999
Q ss_pred HHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEecc
Q 018250 306 AVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRIS 357 (359)
Q Consensus 306 a~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 357 (359)
||.+|++.+|||++++|+||+||++++++++++ ...++++++++|+||.
T Consensus 310 A~~e~~l~~hfg~~i~D~lF~r~~~~v~~~~~~---~~~~~~~~~~sL~rK~ 358 (359)
T d1m6ex_ 310 AVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSK---EKTKFINVIVSLIRKS 358 (359)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS---SCCEEEEEEEEEEBCC
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHhhHhh---cCCceEEEEEEEEecC
Confidence 999999999999999999999999999999986 4478999999999986
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.48 E-value=1.6e-13 Score=123.19 Aligned_cols=153 Identities=15% Similarity=0.175 Sum_probs=103.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~ 132 (359)
...||||+|||+|..|..+. ++. ..|+..|+..++-...-+.... +-.|+. ++..+
T Consensus 16 ~~~rILDiGcGtG~~~~~la--------~~~---------~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~---~d~~~ 75 (234)
T d1xxla_ 16 AEHRVLDIGAGAGHTALAFS--------PYV---------QECIGVDATKEMVEVASSFAQEKGVENVRFQQ---GTAES 75 (234)
T ss_dssp TTCEEEEESCTTSHHHHHHG--------GGS---------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEE---CBTTB
T ss_pred CCCEEEEeCCcCcHHHHHHH--------HhC---------CeEEEEeCChhhhhhhhhhhcccccccccccc---ccccc
Confidence 35789999999999998874 221 3788999988765544333221 222333 36666
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..||++++|+|+|+.++||+.+ ...+|+...+-|+|||++++
T Consensus 76 ~~~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 76 LPFPDDSFDIITCRYAAHHFSD--------------------------------------VRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp CCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccceeeeeceeecccC--------------------------------------HHHHHHHHHHeeCCCcEEEE
Confidence 6689999999999999999643 23477888999999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
+.....+. ..++.+.+.+.... + .......+..++...++.+| |.+..++.+..+
T Consensus 118 ~~~~~~~~---------~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~g-f~~~~~~~~~~~ 172 (234)
T d1xxla_ 118 VDHYAPED---------PVLDEFVNHLNRLR----------D--PSHVRESSLSEWQAMFSANQ-LAYQDIQKWNLP 172 (234)
T ss_dssp EEECBCSS---------HHHHHHHHHHHHHH----------C--TTCCCCCBHHHHHHHHHHTT-EEEEEEEEEEEE
T ss_pred EEcCCCCC---------HHHHHHHHHHHhhC----------C--CcccccCCHHHHHHHHHHCC-CceeEEEEeeCc
Confidence 87665532 12222222222211 1 11123347899999999999 999998887543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.43 E-value=3.6e-12 Score=117.46 Aligned_cols=149 Identities=17% Similarity=0.098 Sum_probs=98.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsf 130 (359)
+...+|||+|||+|..+..++ +++ ...|+..|+....-...-+.... ..+ |.. +++
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~---~d~ 126 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLV--------RKF--------GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY---GSF 126 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE---CCT
T ss_pred CCCCEEEEeCCCCcHHHhhhh--------ccC--------CcEEEEEeccchhhhhhhcccccccccccccccc---ccc
Confidence 346899999999999887774 332 24789999877553332222111 111 333 578
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
.+..||++++|+|+|..++||+. |...+|+.-++-|+|||+|
T Consensus 127 ~~l~~~~~sfD~V~~~~~l~h~~--------------------------------------d~~~~l~~~~~~LkpgG~l 168 (282)
T d2o57a1 127 LEIPCEDNSYDFIWSQDAFLHSP--------------------------------------DKLKVFQECARVLKPRGVM 168 (282)
T ss_dssp TSCSSCTTCEEEEEEESCGGGCS--------------------------------------CHHHHHHHHHHHEEEEEEE
T ss_pred ccccccccccchhhccchhhhcc--------------------------------------CHHHHHHHHHHhcCCCcEE
Confidence 77779999999999999999853 2334777889999999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
++............ .+ . ..+... ..| ..++.+++.++++++| |+....+..
T Consensus 169 ~~~~~~~~~~~~~~-----~~-~---~~~~~~--------------~~~-~~~s~~~~~~~l~~~G-f~~i~~~d~ 219 (282)
T d2o57a1 169 AITDPMKEDGIDKS-----SI-Q---PILDRI--------------KLH-DMGSLGLYRSLAKECG-LVTLRTFSR 219 (282)
T ss_dssp EEEEEEECTTCCGG-----GG-H---HHHHHH--------------TCS-SCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred EEEEeecCCCCchh-----HH-H---HHHHHh--------------ccC-CCCCHHHHHHHHHHcC-CceEEEEEC
Confidence 99876544322110 11 1 111111 111 4578999999999999 987666544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.43 E-value=2.8e-13 Score=120.43 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=103.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC---CCCc-ccccccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL---PPRK-YYAAGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l---~~~~-~~~~~vpgsfy 131 (359)
....+|||+|||+|..|..++ ++. .+++..|+..++-...-+.. .... -|.. +++.
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~--------~~~---------~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~---~d~~ 73 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFA--------PFV---------KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ---GDAE 73 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHG--------GGS---------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---CCC-
T ss_pred CCcCEEEEecccCcHHHHHHH--------HhC---------CEEEEEECCHHHHhhhhhcccccccccccccc---cccc
Confidence 346799999999999998773 221 37888999876544332221 1111 2333 4777
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+..||++++|+|+|..++||+. |...+|+.-++-|+|||+++
T Consensus 74 ~l~~~~~~fD~v~~~~~l~~~~--------------------------------------d~~~~l~~~~r~LkpgG~l~ 115 (231)
T d1vl5a_ 74 QMPFTDERFHIVTCRIAAHHFP--------------------------------------NPASFVSEAYRVLKKGGQLL 115 (231)
T ss_dssp CCCSCTTCEEEEEEESCGGGCS--------------------------------------CHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccccccccccccccC--------------------------------------CHHHHHHHHHHhcCCCcEEE
Confidence 7679999999999999999964 33357888899999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
+......+. ..++.+.+.+.... + .. ...+.+.+++...++++| |++++++.+..
T Consensus 116 i~~~~~~~~---------~~~~~~~~~~~~~~----------~-~~-~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~ 170 (231)
T d1vl5a_ 116 LVDNSAPEN---------DAFDVFYNYVEKER----------D-YS-HHRAWKKSDWLKMLEEAG-FELEELHCFHK 170 (231)
T ss_dssp EEEEEBCSS---------HHHHHHHHHHHHHH----------C-TT-CCCCCBHHHHHHHHHHHT-CEEEEEEEEEE
T ss_pred EEeCCCCCC---------HHHHHHHHHHHhhc----------c-cC-cccCCCHHHHHHHHHHCC-CEEEEEEEeec
Confidence 987655431 12333333322211 1 11 124567899999999999 99988887754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=6e-13 Score=120.13 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=106.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--c-------ccc---
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--K-------YYA--- 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~-------~~~--- 123 (359)
.+..+|+|+|||+|..++.+++ . .-.+|+..|+..++-..+-+.+... . .++
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~--------~--------~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAAC--------D--------SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGG--------G--------TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhc--------c--------ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence 4568999999999999876631 1 1126888888877665544333210 0 011
Q ss_pred -----------------------cccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHH
Q 018250 124 -----------------------AGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKG 180 (359)
Q Consensus 124 -----------------------~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~ 180 (359)
..+..+.....++.+++|+++|..++||+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~------------------------- 168 (257)
T d2a14a1 114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCS------------------------- 168 (257)
T ss_dssp TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS-------------------------
T ss_pred ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhccc-------------------------
Confidence 11222333456899999999999999997542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc
Q 018250 181 VHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA 260 (359)
Q Consensus 181 ~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~ 260 (359)
..|+..+|+..++-|||||+|++......+.. ......+++
T Consensus 169 ---------~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~------------------------------~~~~~~~~~ 209 (257)
T d2a14a1 169 ---------LDAYRAALCNLASLLKPGGHLVTTVTLRLPSY------------------------------MVGKREFSC 209 (257)
T ss_dssp ---------HHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE------------------------------EETTEEEEC
T ss_pred ---------HHHHHHHHHHHHhccCCCcEEEEEEecccccc------------------------------eeccccccc
Confidence 23777899999999999999999887554311 011234566
Q ss_pred cCCCHHHHHHHHHhCCceeEeEEEEeec
Q 018250 261 YFPYVEELESLIQRNGHFAMERMQQLDQ 288 (359)
Q Consensus 261 y~ps~~E~~~~i~~~G~F~i~~le~~~~ 288 (359)
++.+.++++++++++| |+|..++....
T Consensus 210 ~~~~~~~~~~~l~~aG-f~v~~~~~~~~ 236 (257)
T d2a14a1 210 VALEKGEVEQAVLDAG-FDIEQLLHSPQ 236 (257)
T ss_dssp CCCCHHHHHHHHHHTT-EEEEEEEEECC
T ss_pred cCCCHHHHHHHHHHCC-CEEEEEEEecc
Confidence 8889999999999999 99999987743
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=4.3e-12 Score=111.18 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=91.7
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKS 138 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~ 138 (359)
.+|||+|||+|.++..+. +++..|+..+.-+.. +.. .-.|+. +++.+..+|++
T Consensus 38 ~~vLDiGcG~G~~~~~~~---------------------~~~giD~s~~~~~~a-~~~--~~~~~~---~d~~~l~~~~~ 90 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK---------------------IKIGVEPSERMAEIA-RKR--GVFVLK---GTAENLPLKDE 90 (208)
T ss_dssp SCEEEETCTTSTTHHHHT---------------------CCEEEESCHHHHHHH-HHT--TCEEEE---CBTTBCCSCTT
T ss_pred CeEEEECCCCcccccccc---------------------eEEEEeCChhhcccc-ccc--cccccc---ccccccccccc
Confidence 479999999998876551 235667765444332 111 111233 46666668999
Q ss_pred ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 139 TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 139 s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
++|+|+|+.+|||+.+ +..+|+.-++-|+|||+|++..+...
T Consensus 91 ~fD~I~~~~~l~h~~d--------------------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 91 SFDFALMVTTICFVDD--------------------------------------PERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp CEEEEEEESCGGGSSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cccccccccccccccc--------------------------------------cccchhhhhhcCCCCceEEEEecCCc
Confidence 9999999999999743 33477888999999999999997654
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 219 SGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
+ .+. ....... ....+..-.+++|.+|+..+++++| |++.++..
T Consensus 133 ~-----------~~~-------~~~~~~~----~~~~~~~~~~~~s~~~l~~~l~~~G-f~~i~v~~ 176 (208)
T d1vlma_ 133 S-----------FLG-------REYEKNK----EKSVFYKNARFFSTEELMDLMRKAG-FEEFKVVQ 176 (208)
T ss_dssp S-----------HHH-------HHHHHTT----TC-CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEE
T ss_pred c-----------hhH-------Hhhhhcc----ccccccccccCCCHHHHHHHHHHcC-CeEEEEEE
Confidence 3 110 1111111 0112223346789999999999999 98776665
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.37 E-value=3.4e-12 Score=113.72 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=104.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..|..++ +.. ..|..+|+..|+...+....-+.+.. ....+.-..+++. -+
T Consensus 40 ~~~vLDlGCGtG~~~~~l~--------~~~-----~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~--~~ 104 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSAR--------RNI-----NQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR--HV 104 (225)
T ss_dssp TCEEEEESCTTCHHHHHHH--------HTC-----CCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTT--TC
T ss_pred CCEEEEeccchhhHHHHHH--------Hhh-----cCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhh--cc
Confidence 4689999999999998884 222 24678999999998877665443322 1111111112332 35
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|....|+++|++++||++. .|...+|+.-++-|+|||+|++.-.
T Consensus 105 ~~~~~d~i~~~~~l~~~~~------------------------------------~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 105 EIKNASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp CCCSEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeeEEeeeccccCh------------------------------------hhHHHHHHHHHHhCCCCceeecccc
Confidence 6778899999999999752 2666789999999999999999866
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhh----ccCCccccCCCHHHHHHHHHhCCceeE
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKA----RTFNVPAYFPYVEELESLIQRNGHFAM 280 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~----d~f~~P~y~ps~~E~~~~i~~~G~F~i 280 (359)
...+.. ..-..+...+..+....-.++.+. ..+..-.+.+|.+|+.+.++++| |+-
T Consensus 149 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aG-F~~ 208 (225)
T d1im8a_ 149 FRFEDT--------KINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVG-FSQ 208 (225)
T ss_dssp CCCSSH--------HHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHT-CSE
T ss_pred cccccc--------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcC-CCc
Confidence 554321 111223333334333322232222 11222234579999999999999 974
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.34 E-value=4.6e-13 Score=118.00 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEec
Q 018250 23 NSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFN 102 (359)
Q Consensus 23 nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~n 102 (359)
+...++.-+..+.+++++. + ++..+|+|+|||+|..|..++ +. ..+|+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~----l---------~~~~~ILDiGcG~G~~~~~la--------~~---------~~~v~gi 65 (226)
T d1ve3a1 16 NSQEYRSRIETLEPLLMKY----M---------KKRGKVLDLACGVGGFSFLLE--------DY---------GFEVVGV 65 (226)
T ss_dssp TSHHHHHHHHHHHHHHHHS----C---------CSCCEEEEETCTTSHHHHHHH--------HT---------TCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHh----c---------CCCCEEEEECCCcchhhhhHh--------hh---------hcccccc
Confidence 4444555555656665541 1 234699999999999998774 21 2489999
Q ss_pred CCCCCchHHHHHhCCC---CcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCH
Q 018250 103 DHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMK 179 (359)
Q Consensus 103 DLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~ 179 (359)
|+..++....-+.... ..-++. ++..+..+|++++|+|+|+.++||++.
T Consensus 66 D~S~~~i~~ak~~~~~~~~~~~~~~---~d~~~l~~~~~~fD~I~~~~~l~~~~~------------------------- 117 (226)
T d1ve3a1 66 DISEDMIRKAREYAKSRESNVEFIV---GDARKLSFEDKTFDYVIFIDSIVHFEP------------------------- 117 (226)
T ss_dssp ESCHHHHHHHHHHHHHTTCCCEEEE---CCTTSCCSCTTCEEEEEEESCGGGCCH-------------------------
T ss_pred cccccchhhhhhhhccccccccccc---cccccccccCcCceEEEEecchhhCCh-------------------------
Confidence 9987766444332211 112233 356566689999999999999999631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 180 GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 180 ~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
.|+..+|+.-++-|||||+|++.+..
T Consensus 118 -----------~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 118 -----------LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp -----------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 36777899999999999999998763
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.33 E-value=2e-12 Score=118.20 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=100.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc--ccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK--YYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~--~~~~~vpgsfy~~ 133 (359)
.+..+|||+|||+|..|..++ .++. -+|...|....+....-+.+.... -|.. +++.+.
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll--------~~~~--------~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~d~~~~ 152 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLL--------TKLY--------ATTDLLEPVKHMLEEAKRELAGMPVGKFIL---ASMETA 152 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTH--------HHHC--------SEEEEEESCHHHHHHHHHHTTTSSEEEEEE---SCGGGC
T ss_pred CCCCeEEEecccCChhhHHHH--------hhcC--------ceEEEEcCCHHHHHhhhccccccccceeEE---cccccc
Confidence 456899999999999998774 2221 267888988766555544444311 1333 366566
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.++++++|+|+|..++||+++ .|+..||+..++.|+|||++++.
T Consensus 153 ~~~~~~fD~I~~~~vl~hl~d------------------------------------~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 153 TLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCccceEEeeccccccch------------------------------------hhhHHHHHHHHHhcCCCcEEEEE
Confidence 688999999999999999742 25677999999999999999987
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
......... ..+. ..+..++|.++++++++++| |++.+.+.
T Consensus 197 e~~~~~~~~-----------------------------~~d~-~d~~~~rs~~~~~~l~~~aG-f~ii~~~~ 237 (254)
T d1xtpa_ 197 ENCSTGDRF-----------------------------LVDK-EDSSLTRSDIHYKRLFNESG-VRVVKEAF 237 (254)
T ss_dssp EEBC--CCE-----------------------------EEET-TTTEEEBCHHHHHHHHHHHT-CCEEEEEE
T ss_pred ecCCCCCcc-----------------------------eecc-cCCceeCCHHHHHHHHHHcC-CEEEEEEe
Confidence 643332110 0011 12335689999999999999 98876554
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=6.5e-11 Score=109.63 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=100.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsfy 131 (359)
...+|||+|||.|..++.++ +++ ..+|+..|+..+.....-+.... ..+ +... ++.
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a--------~~~--------g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~---d~~ 112 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAV--------ERF--------DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ---GWE 112 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES---CGG
T ss_pred CCCEEEEecCCchHHHHHHH--------HhC--------ceeEEEecchHHHHHHHHHHHHhhccccchhhhhh---hhh
Confidence 46899999999999887763 332 25888888887665443222221 111 2221 221
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.+++++|.|+|..+++.+.. +++..||+.-++-|||||+++
T Consensus 113 ---~~~~~fD~i~si~~~eh~~~------------------------------------~~~~~~f~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 113 ---DFAEPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMT 153 (280)
T ss_dssp ---GCCCCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEE
T ss_pred ---hhccchhhhhHhhHHHHhhh------------------------------------hhHHHHHHHHHhccCCCceEE
Confidence 23679999999999988532 367789999999999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+...+..+............++ ..-+.+ -+..+.+|. +.||.+|+...+++.| |++..++.+
T Consensus 154 i~~i~~~~~~~~~~~~~~~~~~--~~~~~d----------fI~kyifPgg~lPS~~~l~~~~e~aG-f~v~~~~~~ 216 (280)
T d2fk8a1 154 VQSSVSYHPYEMAARGKKLSFE--TARFIK----------FIVTEIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSL 216 (280)
T ss_dssp EEEEECCCHHHHHTTCHHHHHH--HHHHHH----------HHHHHTSTTCCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred EEEeeccCcchhhhcccccccc--cccccc----------hhhhhccCCCcccchHhhhhhHHhhc-cccceeeec
Confidence 9887655421000000000000 000011 112345565 6799999999999999 999888776
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.5e-11 Score=112.81 Aligned_cols=158 Identities=8% Similarity=0.075 Sum_probs=98.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-c-ccccCc-
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-Y-AAGVPG- 128 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~-~~~vpg- 128 (359)
...++|||+|||+|..|..++..+ ..+++ ...+.++..|...++....-+.+.. ... + +...+.
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l----~~~~~-----~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 109 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKV----QAQYP-----GVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSS 109 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHH----HHHST-----TCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHh----hhhcc-----CCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 457899999999999888886443 33332 2346778889877665554444332 111 0 000000
Q ss_pred ---ccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018250 129 ---SFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV 205 (359)
Q Consensus 129 ---sfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 205 (359)
+.....++++++|+|+|+.+|||+.+ ...+|+.-.+-|+
T Consensus 110 ~~~~~~~~~~~~~~fD~I~~~~~l~~~~d--------------------------------------~~~~l~~l~~~Lk 151 (280)
T d1jqea_ 110 EYQSRMLEKKELQKWDFIHMIQMLYYVKD--------------------------------------IPATLKFFHSLLG 151 (280)
T ss_dssp HHHHHHTTSSSCCCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHTEE
T ss_pred hhcchhcccCCCCceeEEEEccceecCCC--------------------------------------HHHHHHHHHhhCC
Confidence 11134578999999999999999653 3347888899999
Q ss_pred cCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEE
Q 018250 206 PGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM 283 (359)
Q Consensus 206 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~l 283 (359)
|||.|+++.....+ ...++ |..+... .. +.. ...+++.+++..++++.| |.....
T Consensus 152 pgG~l~i~~~~~~~----------~~~~l----~~~~~~~-~~-----~~~--~~~~~~~~~~~~~L~~~G-~~~~~~ 206 (280)
T d1jqea_ 152 TNAKMLIIVVSGSS----------GWDKL----WKKYGSR-FP-----QDD--LCQYITSDDLTQMLDNLG-LKYECY 206 (280)
T ss_dssp EEEEEEEEEECTTS----------HHHHH----HHHHGGG-SC-----CCT--TSCCCCHHHHHHHHHHHT-CCEEEE
T ss_pred CCCEEEEEEecCcc----------hHHHH----HHHHHHh-cC-----CCc--ccccCCHHHHHHHHHHCC-CceEEE
Confidence 99999998875432 11122 2222111 00 111 123567899999999999 865433
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.3e-12 Score=112.89 Aligned_cols=147 Identities=14% Similarity=0.062 Sum_probs=103.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-ccccccCcccccCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-YYAAGVPGSFHGRL 134 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-~~~~~vpgsfy~~l 134 (359)
.+..+|||+|||+|.++..++ ++ .+ -+|+..|+..++-...-+..+... -.+.-+.+++.+..
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~--------~~-------~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~ 122 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLL--------LP-------LF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT 122 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTT--------TT-------TC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC
T ss_pred CCCCEEEEeccCCCHhhHHHH--------Hh-------cC-CEEEEeecCHHHhhccccccccccccccccccccccccc
Confidence 346799999999999988763 11 11 378899999877665544443211 01122235887877
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+|+|..++|++.. .|+..+|+.-++-|+|||.+++..
T Consensus 123 ~~~~~fD~I~~~~~l~h~~~------------------------------------~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 123 PEPDSYDVIWIQWVIGHLTD------------------------------------QHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp CCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccccccccchh------------------------------------hhhhhHHHHHHHhcCCcceEEEEE
Confidence 89999999999999999642 145568888999999999999986
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
....+.... + .....+.++.++++++++++| |++.+.+..
T Consensus 167 ~~~~~~~~~------------------------------~-~~~~~~~~~~~~~~~l~~~aG-f~ii~~~~q 206 (222)
T d2ex4a1 167 NMAQEGVIL------------------------------D-DVDSSVCRDLDVVRRIICSAG-LSLLAEERQ 206 (222)
T ss_dssp EEBSSSEEE------------------------------E-TTTTEEEEBHHHHHHHHHHTT-CCEEEEEEC
T ss_pred ccccccccc------------------------------c-cCCceeeCCHHHHHHHHHHcC-CEEEEEEEe
Confidence 543332100 0 112336779999999999999 998777653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.25 E-value=3.4e-11 Score=109.38 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=102.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~ 133 (359)
.+..+|+|+|||+|..++.++ ++ .|+.+++.-|+|. .....-+.+... .--+.-++|+|++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la--------~~-------~p~~~~~~~D~~~-~~~~a~~~~~~~~~~~rv~~~~~D~~~~ 142 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIA--------RR-------APHVSATVLEMAG-TVDTARSYLKDEGLSDRVDVVEGDFFEP 142 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECTT-HHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred ccCCEEEEeCCCCCHHHHHHH--------Hh-------cceeEEEEccCHH-HHHHHHHHHHHhhcccchhhccccchhh
Confidence 445799999999999999884 44 3678999999974 433333332211 11233445788763
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.| .++|+++++.+||.+++ .+...+|+.-++.|+|||++++.
T Consensus 143 -~~-~~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 143 -LP-RKADAIILSFVLLNWPD------------------------------------HDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp -CS-SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -cc-cchhheeeccccccCCc------------------------------------hhhHHHHHHHHHhcCCCcEEEEE
Confidence 34 46999999999996432 13445788889999999999987
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
-......... ......+. +.-|+.-|- ..+|.+|++++++++| |++.++..+..|
T Consensus 185 e~~~~~~~~~-----~~~~~~~d--l~~~~~~~g-------------~~rt~~e~~~ll~~AG-f~~~~v~~~~~p 239 (253)
T d1tw3a2 185 ERDDLHENSF-----NEQFTELD--LRMLVFLGG-------------ALRTREKWDGLAASAG-LVVEEVRQLPSP 239 (253)
T ss_dssp ECCBCGGGCC-----SHHHHHHH--HHHHHHHSC-------------CCCBHHHHHHHHHHTT-EEEEEEEEEECS
T ss_pred eccCCCCCcc-----hhHHHHhh--HHHHhhCCC-------------cCCCHHHHHHHHHHCC-CeEEEEEECCCC
Confidence 5433221111 01111111 112222221 3579999999999999 999998887544
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.2e-11 Score=113.25 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=104.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-C-----c---------
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-R-----K--------- 120 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~-----~--------- 120 (359)
.+..+|+|+|||+|..++..++ +. . ..|+..|...++...+-+.+.. . .
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~-------~~--------~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~ 116 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSAC-------SH--------F-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI 116 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGG-------GG--------C-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhc-------cc--------C-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhh
Confidence 4568999999999988765531 11 1 2688888887766554433321 0 0
Q ss_pred --------------------cccccc--CcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCC
Q 018250 121 --------------------YYAAGV--PGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFM 178 (359)
Q Consensus 121 --------------------~~~~~v--pgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~ 178 (359)
.+.+-+ ++.+....++++++|+|.|+++|||++.-+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~---------------------- 174 (263)
T d2g72a1 117 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL---------------------- 174 (263)
T ss_dssp HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSH----------------------
T ss_pred ccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCH----------------------
Confidence 011111 334444556788999999999999975422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCc
Q 018250 179 KGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNV 258 (359)
Q Consensus 179 ~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~ 258 (359)
.|+..+|+..++-|||||.|++....+.+... ...-.+
T Consensus 175 ------------~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~------------------------------~~~~~~ 212 (263)
T d2g72a1 175 ------------ASFQRALDHITTLLRPGGHLLLIGALEESWYL------------------------------AGEARL 212 (263)
T ss_dssp ------------HHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE------------------------------ETTEEE
T ss_pred ------------HHHHHHHHHHHHHcCCCCEEEEecccCCcccc------------------------------cCCccc
Confidence 25778899999999999999998875443110 011234
Q ss_pred cccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 259 PAYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 259 P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
+.++.+.+|++++++++| |+|..++....+
T Consensus 213 ~~~~~t~e~v~~~l~~aG-f~v~~~~~~~~~ 242 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSG-YKVRDLRTYIMP 242 (263)
T ss_dssp ECCCCCHHHHHHHHHHTT-EEEEEEEEEECC
T ss_pred ccCCCCHHHHHHHHHHCC-CeEEEEEEeecc
Confidence 567889999999999999 999998887543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.4e-10 Score=104.36 Aligned_cols=146 Identities=16% Similarity=0.068 Sum_probs=97.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh---CC--CCcccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT---LP--PRKYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~---l~--~~~~~~~~vpgsfy~ 132 (359)
..+|||+|||+|..+..+. +++ ...|+.-|+...+....-+. .. ++--|.. +++.+
T Consensus 34 g~~VLDiGCG~G~~~~~la--------~~~--------~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~---~d~~~ 94 (245)
T d1nkva_ 34 GTRILDLGSGSGEMLCTWA--------RDH--------GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH---NDAAG 94 (245)
T ss_dssp TCEEEEETCTTCHHHHHHH--------HHT--------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCCTT
T ss_pred CCEEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEEecccchhhHHHHHHHHhhccccchhhh---hHHhh
Confidence 4789999999998887663 332 25889999987555432222 11 1112443 46644
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
++|++++|+|+|..++||+.+. ..+|+..++-|||||++++
T Consensus 95 -~~~~~~fD~v~~~~~~~~~~d~--------------------------------------~~~l~~~~r~LkPGG~l~i 135 (245)
T d1nkva_ 95 -YVANEKCDVAACVGATWIAGGF--------------------------------------AGAEELLAQSLKPGGIMLI 135 (245)
T ss_dssp -CCCSSCEEEEEEESCGGGTSSS--------------------------------------HHHHHHHTTSEEEEEEEEE
T ss_pred -ccccCceeEEEEEehhhccCCH--------------------------------------HHHHHHHHHHcCcCcEEEE
Confidence 5789999999999999997642 2477788999999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
...+....... +.+...|. ...+..+.+..++...+++.| |++...+..
T Consensus 136 ~~~~~~~~~~~---------~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~aG-~~~v~~~~~ 184 (245)
T d1nkva_ 136 GEPYWRQLPAT---------EEIAQACG---------------VSSTSDFLTLPGLVGAFDDLG-YDVVEMVLA 184 (245)
T ss_dssp EEEEETTCCSS---------HHHHHTTT---------------CSCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred EeccccCCCCh---------HHHHHHhc---------------cCCCcccCCHHHHHHHHHHcC-CEEEEEEeC
Confidence 98765542211 11111111 112224678999999999999 988766544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.18 E-value=3.2e-09 Score=98.53 Aligned_cols=165 Identities=15% Similarity=0.218 Sum_probs=99.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHH---HHhCCC-Ccc-cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTL---FRTLPP-RKY-YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l---f~~l~~-~~~-~~~~vpgsfy 131 (359)
...+|||+|||.|..++.++ +++ ..+|+..|+..+-..-. .+...- ..+ +.. .++
T Consensus 61 ~G~~VLDiGCG~G~~~~~~a--------~~~--------g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~- 120 (291)
T d1kpia_ 61 PGMTLLDIGCGWGSTMRHAV--------AEY--------DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGW- 120 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHH--------CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCG-
T ss_pred CCCEEEEecCcchHHHHHHH--------Hhc--------CcceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcc-
Confidence 45899999999999888774 333 24677777776443221 121111 111 111 122
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.++++++|.|+|.-++..+....... ..+.+..||+.-++-|||||+|+
T Consensus 121 --~~~~~~fD~i~sie~~eH~~~~~~~~-----------------------------~~~~~~~~f~~i~~~LkpgG~~~ 169 (291)
T d1kpia_ 121 --EEFDEPVDRIVSLGAFEHFADGAGDA-----------------------------GFERYDTFFKKFYNLTPDDGRML 169 (291)
T ss_dssp --GGCCCCCSEEEEESCGGGTTCCSSCC-----------------------------STTHHHHHHHHHHHTSCTTCEEE
T ss_pred --cccccccceEeechhHHhcchhhhhh-----------------------------HHHHHHHHHHHHHHhCCCCCceE
Confidence 36789999999999996644321110 12467789999999999999999
Q ss_pred EEeccCCCCCCCCCcc-hhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTV-QGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~-~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+..++.++.....+.. ... ..... ..+. +..+.+|. +.||..|+...+++.| |+|+..+.+
T Consensus 170 l~~i~~~~~~~~~~~~~~~p-~~~~~--~~~f----------i~kyiFpgg~lps~~~~~~~~e~~g-l~v~~~~~~ 232 (291)
T d1kpia_ 170 LHTITIPDKEEAQELGLTSP-MSLLR--FIKF----------ILTEIFPGGRLPRISQVDYYSSNAG-WKVERYHRI 232 (291)
T ss_dssp EEEEECCCHHHHHHHTCCCC-HHHHH--HHHH----------HHHHTCTTCCCCCHHHHHHHHHHHT-CEEEEEEEC
T ss_pred EEEEeccCcchhhhccCCCc-hhhcc--cchH----------HHHHhcCCCCCCCHHHHHhhhcccc-cccceeeec
Confidence 9999876521000000 000 00000 0000 01123443 7799999999999999 999888877
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.15 E-value=4.3e-11 Score=102.48 Aligned_cols=143 Identities=10% Similarity=0.004 Sum_probs=100.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC-------------ccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR-------------KYY 122 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~-------------~~~ 122 (359)
+...||||+|||+|.++..++ ++ .++|+..|+..++-....+..... ...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la--------~~---------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLS--------GQ---------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHH--------HH---------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred CCCCEEEEecCcCCHHHHHHH--------Hc---------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence 446799999999999999885 22 368999999988877766554431 001
Q ss_pred ccccCcccccCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 123 AAGVPGSFHGRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARA 201 (359)
Q Consensus 123 ~~~vpgsfy~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra 201 (359)
..-+.+++.... .+..++|+++|+.++|++.. .++..+++.-+
T Consensus 82 ~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~------------------------------------~~~~~~~~~i~ 125 (201)
T d1pjza_ 82 IEIWCGDFFALTARDIGHCAAFYDRAAMIALPA------------------------------------DMRERYVQHLE 125 (201)
T ss_dssp SEEEEECCSSSTHHHHHSEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHH
T ss_pred cceecccccccccccccceeEEEEEeeeEecch------------------------------------hhhHHHHHHHH
Confidence 111223444333 35678999999999999652 24566788889
Q ss_pred HhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEe
Q 018250 202 EELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAME 281 (359)
Q Consensus 202 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~ 281 (359)
+-|||||++++......... ...|.|..+.+|+++++. .+ |++.
T Consensus 126 ~~LkpgG~l~l~~~~~~~~~----------------------------------~~~p~~~~~~~el~~l~~-~~-~~i~ 169 (201)
T d1pjza_ 126 ALMPQACSGLLITLEYDQAL----------------------------------LEGPPFSVPQTWLHRVMS-GN-WEVT 169 (201)
T ss_dssp HHSCSEEEEEEEEESSCSSS----------------------------------SSSCCCCCCHHHHHHTSC-SS-EEEE
T ss_pred HhcCCCcEEEEEEccccccc----------------------------------CCCccccCCHHHHHHHhC-CC-cEEE
Confidence 99999999998877554321 123557778999988774 45 9988
Q ss_pred EEEEee
Q 018250 282 RMQQLD 287 (359)
Q Consensus 282 ~le~~~ 287 (359)
.++...
T Consensus 170 ~~~~~~ 175 (201)
T d1pjza_ 170 KVGGQD 175 (201)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 877664
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=5e-09 Score=96.94 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=92.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsfy 131 (359)
.-.+|||+|||.|..++.++. .+ ..+|..-++..+-....-+.... ..+ +.. ++|.
T Consensus 62 ~G~~VLDiGCG~G~~a~~~a~--------~~--------g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~---~d~~ 122 (285)
T d1kpga_ 62 PGMTLLDVGCGWGATMMRAVE--------KY--------DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL---AGWE 122 (285)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--------HH--------CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE---SCGG
T ss_pred CCCEEEEecCcchHHHHHHHh--------cC--------CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH---hhhh
Confidence 358999999999999988752 22 13555555554332222111111 111 111 2331
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
..++++|-++|-.++..+.. +++..||+..++-|+|||+|+
T Consensus 123 ---~~~~~fD~i~si~~~eh~~~------------------------------------~~~~~~~~~~~r~LkpgG~~~ 163 (285)
T d1kpga_ 123 ---QFDEPVDRIVSIGAFEHFGH------------------------------------ERYDAFFSLAHRLLPADGVML 163 (285)
T ss_dssp ---GCCCCCSEEEEESCGGGTCT------------------------------------TTHHHHHHHHHHHSCTTCEEE
T ss_pred ---cccccccceeeehhhhhcCc------------------------------------hhHHHHHHHHHhhcCCCCcEE
Confidence 12478999999888887532 245678999999999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc-ccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP-AYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P-~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+..++........+.....- ........-+ ..+.+| -+.||.+++..+++++| |+|+.++.+
T Consensus 164 l~~i~~~~~~~~~~~~~~~~-~~~~~~~~fi-----------~kyiFpgg~lPsl~~~~~~~e~ag-f~v~~~~~~ 226 (285)
T d1kpga_ 164 LHTITGLHPKEIHERGLPMS-FTFARFLKFI-----------VTEIFPGGRLPSIPMVQECASANG-FTVTRVQSL 226 (285)
T ss_dssp EEEEEECCHHHHTTTTCSCH-HHHHHHHHHH-----------HHHTSTTCCCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred EEEEeccCchhhccccCCcc-hhhhchhhHH-----------HHHhccCCCCCChhhHHHHHHHhc-hhhcccccc
Confidence 98887443100000000000 0111111111 112222 25799999999999999 999888776
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.06 E-value=4.1e-10 Score=100.02 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=93.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..+..+. ++ -..|+..|+..+.-+..-+..+..--|+. +++.. +.++
T Consensus 21 ~~~VLDiGcG~G~~~~~l~--------~~---------g~~v~giD~s~~~i~~a~~~~~~~~~~~~---~~~~~-~~~~ 79 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQ--------EH---------FNDITCVEASEEAISHAQGRLKDGITYIH---SRFED-AQLP 79 (225)
T ss_dssp SSCEEEESCTTSHHHHHHT--------TT---------CSCEEEEESCHHHHHHHHHHSCSCEEEEE---SCGGG-CCCS
T ss_pred CCcEEEEeCCCcHHHHHHH--------Hc---------CCeEEEEeCcHHHhhhhhccccccccccc---ccccc-cccc
Confidence 4579999999999998773 11 13688889876554444333332222333 35543 4457
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH-HHhhccCceeEEEecc
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR-AEELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R-a~EL~pGG~lvl~~~g 216 (359)
+++|+|+|+..|||+++. ..+|+.- .+-|+|||.++++++.
T Consensus 80 ~~fD~I~~~~vleh~~d~--------------------------------------~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 80 RRYDNIVLTHVLEHIDDP--------------------------------------VALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp SCEEEEEEESCGGGCSSH--------------------------------------HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccccccccceeEecCCH--------------------------------------HHHHHHHHHHhcCCCceEEEEeCC
Confidence 899999999999997542 1244443 3679999999999874
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhh----c-cCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKA----R-TFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~----d-~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
... ++..+ ....|.+..... + ...+ ....+.++++..+++.| |+|...+.+
T Consensus 122 ~~~-----------~~~~~------~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~l~~~l~~~G-f~i~~~~~~ 177 (225)
T d2p7ia1 122 ANA-----------VSRQI------AVKMGIISHNSAVTEAEFAHGH-RCTYALDTLERDASRAG-LQVTYRSGI 177 (225)
T ss_dssp TTC-----------HHHHH------HHHTTSSSSTTCCCHHHHHTTC-CCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred ccc-----------HHHHH------HHHhhhhhhhhhcCccccceee-eeccCHHHHHHHHHHCC-CEEEEEEEE
Confidence 332 11111 111222221110 0 0111 23448999999999999 999888764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.1e-09 Score=97.56 Aligned_cols=143 Identities=10% Similarity=0.016 Sum_probs=101.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC------------cc-c-
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR------------KY-Y- 122 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~------------~~-~- 122 (359)
...||||+|||+|.++..++ ++ .++|+.-|+....-...++..+.. .. .
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA--------~~---------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFA--------DR---------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHH--------HT---------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHH--------hC---------CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 45799999999999999985 22 368999999987766666654420 00 1
Q ss_pred ----ccccCcccccC-CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHH
Q 018250 123 ----AAGVPGSFHGR-LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESIL 197 (359)
Q Consensus 123 ----~~~vpgsfy~~-l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL 197 (359)
+.-+-+++++. ..+.+++|++++..++|.+.. + +...++
T Consensus 108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~--~----------------------------------~r~~~~ 151 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP--G----------------------------------DRKCYA 151 (229)
T ss_dssp TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG--G----------------------------------GHHHHH
T ss_pred cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccc--h----------------------------------hhHHHH
Confidence 11112355444 367899999999999999641 1 344567
Q ss_pred HHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCc
Q 018250 198 NARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGH 277 (359)
Q Consensus 198 ~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~ 277 (359)
+.-++-|+|||++++..+...... ...|.|..+.+|+++.+.. +
T Consensus 152 ~~~~~~LkpgG~~~l~~~~~~~~~----------------------------------~~gpp~~~~~~el~~lf~~-~- 195 (229)
T d2bzga1 152 DTMFSLLGKKFQYLLCVLSYDPTK----------------------------------HPGPPFYVPHAEIERLFGK-I- 195 (229)
T ss_dssp HHHHHTEEEEEEEEEEEEECCTTT----------------------------------CCCSSCCCCHHHHHHHHTT-T-
T ss_pred HHHHhhcCCcceEEEEEcccCCCC----------------------------------CCCCCCCCCHHHHHHHhcC-C-
Confidence 778999999999999887654311 1235577899999999964 5
Q ss_pred eeEeEEEEeec
Q 018250 278 FAMERMQQLDQ 288 (359)
Q Consensus 278 F~i~~le~~~~ 288 (359)
|+|+.+|..+.
T Consensus 196 ~~i~~le~~~~ 206 (229)
T d2bzga1 196 CNIRCLEKVDA 206 (229)
T ss_dssp EEEEEEEEEEC
T ss_pred CEEEEEEEecc
Confidence 99999988754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=3.6e-10 Score=100.22 Aligned_cols=100 Identities=17% Similarity=0.284 Sum_probs=72.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
+...+|||+|||+|..+..+. +. ..+|+..|+...+-...-.... ..++. +++.+..|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~giD~s~~~l~~a~~~~~--~~~~~---~~~~~l~~ 98 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQ--------ER---------GFEVVLVDPSKEMLEVAREKGV--KNVVE---AKAEDLPF 98 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHH--------TT---------TCEEEEEESCHHHHHHHHHHTC--SCEEE---CCTTSCCS
T ss_pred CCCCEEEEECCCCchhccccc--------cc---------ceEEEEeecccccccccccccc--ccccc---cccccccc
Confidence 345689999999999998773 21 3589999998866544332222 12333 46666669
Q ss_pred CCCceeEEEec-CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 PKSTLHVVNSF-NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p~~s~d~~~S~-~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
|++++|+|+|. ..+||+.+ ...+|+.-++-|||||++++++
T Consensus 99 ~~~~fD~ii~~~~~~~~~~d--------------------------------------~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 99 PSGAFEAVLALGDVLSYVEN--------------------------------------KDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CTTCEEEEEECSSHHHHCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeeecchhhhhhh--------------------------------------HHHHHHHHHhhcCcCcEEEEEE
Confidence 99999999986 57899643 2347777889999999999988
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 141 ~ 141 (246)
T d2avna1 141 D 141 (246)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.02 E-value=1.1e-09 Score=99.68 Aligned_cols=157 Identities=19% Similarity=0.164 Sum_probs=96.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHH-hCCC--CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFR-TLPP--RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~-~l~~--~~~~~~~vpgsfy~ 132 (359)
++.-+|+|+|||+|..+..++ ++ .|+.+++.-|+|.. -...+ .+.. ..--+.-++++|+.
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~--------~~-------~P~~~~~~~Dlp~~--~~~a~~~~~~~~~~~ri~~~~~d~~~ 142 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIA--------LR-------APHLRGTLVELAGP--AERARRRFADAGLADRVTVAEGDFFK 142 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHHH--HHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred ccCCEEEEECCCCCHHHHHHH--------Hh-------hcCcEEEEecChHH--HHHHHHHHhhcCCcceeeeeeeeccc
Confidence 345689999999999888884 44 36789999999852 11111 1111 01123334578876
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
. +|. +.|++++.++||-+++ .+...+|+.-++.|+|||++++
T Consensus 143 ~-~p~-~~D~v~~~~vLh~~~d------------------------------------~~~~~lL~~i~~~LkpgG~llI 184 (256)
T d1qzza2 143 P-LPV-TADVVLLSFVLLNWSD------------------------------------EDALTILRGCVRALEPGGRLLV 184 (256)
T ss_dssp C-CSC-CEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred c-ccc-cchhhhccccccccCc------------------------------------HHHHHHHHHHHhhcCCcceeEE
Confidence 3 454 5899999999984321 2445688888999999999988
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.-.-..+... ....+..+-+ +.-|+.-| -..+|.+|++++++++| |++.+.....
T Consensus 185 ~d~~~~~~~~-----~~~~~~~~~d-~~ml~~~~-------------g~~rt~~e~~~ll~~AG-f~~~~~~~~~ 239 (256)
T d1qzza2 185 LDRADVEGDG-----ADRFFSTLLD-LRMLTFMG-------------GRVRTRDEVVDLAGSAG-LALASERTSG 239 (256)
T ss_dssp EECCH------------HHHHHHHH-HHHHHHHS-------------CCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred EEeccCCCCc-----ccHHHHHHHH-HHHHhhCC-------------CccCCHHHHHHHHHHCC-CceeEEEEeC
Confidence 6532221111 0111111111 11122111 14579999999999999 9998887653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.96 E-value=9.2e-10 Score=98.36 Aligned_cols=104 Identities=20% Similarity=0.344 Sum_probs=74.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~ 132 (359)
.+..+|||+|||+|..|+.++ ++ ..+|+..|+..++-...-+..+. +--|.. +++.+
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~--------~~---------~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~---~d~~~ 99 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELA--------ER---------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQ---GDVLE 99 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEE---SCGGG
T ss_pred CCCCEEEEeCCCCCccchhhc--------cc---------ceEEEEEeeccccccccccccccccccchhee---hhhhh
Confidence 345699999999999988774 22 24789999998776655444332 112333 46644
Q ss_pred CCCCCCceeEEEec-CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 133 RLFPKSTLHVVNSF-NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 133 ~l~p~~s~d~~~S~-~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
-.++ +++|+|+|. .++||++. .|+..+|+..++-|+|||+++
T Consensus 100 l~~~-~~fD~I~~~~~~~~~~~~------------------------------------~~~~~~L~~~~~~LkpgG~li 142 (251)
T d1wzna1 100 IAFK-NEFDAVTMFFSTIMYFDE------------------------------------EDLRKLFSKVAEALKPGGVFI 142 (251)
T ss_dssp CCCC-SCEEEEEECSSGGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred cccc-cccchHhhhhhhhhcCCh------------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence 4455 689999996 67888641 266779999999999999999
Q ss_pred EEecc
Q 018250 212 FSLIT 216 (359)
Q Consensus 212 l~~~g 216 (359)
+.+..
T Consensus 143 i~~~~ 147 (251)
T d1wzna1 143 TDFPC 147 (251)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 98754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.93 E-value=9.5e-09 Score=94.38 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=72.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~ 132 (359)
.++.+|+|+|||+|..+..++ +.+ ++...|+..|+..+.....-+.... +.-|.. +++.+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la--------~~~------~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~---~d~~~ 88 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLM--------PLL------PEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE---GDATE 88 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHT--------TTS------CTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEE---SCTTT
T ss_pred CCcCEEEEecCcCCHHHHHHH--------HhC------CCCCEEEEEecchhHhhhhhcccccccccccccc---ccccc
Confidence 467899999999999988773 222 1235789999987665554333322 112333 36654
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..+ ++++|+|+|+.++||+++ ...+|+.-++-|||||++++
T Consensus 89 ~~~-~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~lii 129 (281)
T d2gh1a1 89 IEL-NDKYDIAICHAFLLHMTT--------------------------------------PETMLQKMIHSVKKGGKIIC 129 (281)
T ss_dssp CCC-SSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTEEEEEEEEE
T ss_pred ccc-cCCceEEEEehhhhcCCC--------------------------------------HHHHHHHHHHHcCcCcEEEE
Confidence 444 468999999999999753 23467778899999999998
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
.-+
T Consensus 130 ~~~ 132 (281)
T d2gh1a1 130 FEP 132 (281)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.90 E-value=6.2e-10 Score=99.77 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=73.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~ 132 (359)
+.+.+|||+|||+|..|..+. ++ ..+++.-|+...+.....+..+. +--|+. +++.+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~--------~~---------g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~---~d~~~ 95 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLC--------PK---------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLAC---QDISN 95 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHG--------GG---------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEEC---CCGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHH--------Hh---------CCccEeeccchhhhhhccccccccCccceeec---cchhh
Confidence 345789999999999998773 22 24889999998876655443321 112333 35544
Q ss_pred CCCCCCceeEEEec-CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 133 RLFPKSTLHVVNSF-NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 133 ~l~p~~s~d~~~S~-~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
-- +++++|+|+|. .+++|+.. .+|+..+|+..++-|+|||+|+
T Consensus 96 ~~-~~~~fD~i~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 96 LN-INRKFDLITCCLDSTNYIID-----------------------------------SDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp CC-CSCCEEEEEECTTGGGGCCS-----------------------------------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred hc-ccccccccceeeeeeeccCC-----------------------------------HHHHHHHHHHHHHhCCCCeEEE
Confidence 32 36799999986 67888543 1377889999999999999999
Q ss_pred EEec
Q 018250 212 FSLI 215 (359)
Q Consensus 212 l~~~ 215 (359)
+.+.
T Consensus 140 ~~~~ 143 (246)
T d1y8ca_ 140 FDIN 143 (246)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.89 E-value=3.2e-09 Score=92.16 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=74.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-ccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-YYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-~~~~~vpgsfy~~l~p 136 (359)
+.+|||+|||+|.+++.++ ++ ..+|+..|+.......+-+...... -.+...-+++ ..+.|
T Consensus 31 ~grvLDiGcG~G~~~~~la--------~~---------g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~-~~~~~ 92 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLA--------AN---------GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL-NTLTF 92 (198)
T ss_dssp SCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT-TTCCC
T ss_pred CCcEEEECCCCCHHHHHHH--------HH---------hhhhccccCcHHHHHHHHHHhhhccccchhhhheec-ccccc
Confidence 3589999999999999884 22 2488899998877665433221100 0122222344 45557
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|+.++|++.. .++..+|+.-++-|+|||++++..+.
T Consensus 93 ~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 93 DGEYDFILSTVVMMFLEA------------------------------------QTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp CCCEEEEEEESCGGGSCT------------------------------------THHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cccccEEEEeeeeecCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 899999999999999632 14566888899999999999998765
Q ss_pred CC
Q 018250 217 GP 218 (359)
Q Consensus 217 ~~ 218 (359)
..
T Consensus 137 ~~ 138 (198)
T d2i6ga1 137 DT 138 (198)
T ss_dssp C-
T ss_pred CC
Confidence 43
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.87 E-value=9.1e-09 Score=92.65 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=75.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
+.-+|||+|||+|..+..++ +.. .-+|+..|+...+....-..... .. -|..+ +..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~--------~~~--------~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~---D~~ 84 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYE--------RAG--------IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ---DSY 84 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHH--------HHT--------CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES---CTT
T ss_pred CcCEEEEecccCcHHHHHHH--------HcC--------CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEc---chh
Confidence 45789999999999887763 220 13789999998776665433211 11 13332 444
Q ss_pred cCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
...+ +++++|+|+|..++||+-.. .+|+..+|+..++-|+|||+|
T Consensus 85 ~~~~~~~~~fD~V~~~~~l~~~~~~----------------------------------~~~~~~~l~~i~~~Lk~gG~~ 130 (252)
T d1ri5a_ 85 GRHMDLGKEFDVISSQFSFHYAFST----------------------------------SESLDIAQRNIARHLRPGGYF 130 (252)
T ss_dssp TSCCCCSSCEEEEEEESCGGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred hhcccccccceEEEEcceeeecCCC----------------------------------HHHHHHHHHHHhceeCCCCEE
Confidence 4444 68899999999999996421 247788999999999999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
+++++
T Consensus 131 i~~~~ 135 (252)
T d1ri5a_ 131 IMTVP 135 (252)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99885
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=3.9e-09 Score=96.46 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=74.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
.+..+|+|+|||+|..+..+. +. .|+.+++..|+...+-....+..+. --|.. ++.....|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~--------~~-------~~~~~~~giD~s~~~~~~a~~~~~~-~~~~~---~d~~~l~~ 143 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFA--------DA-------LPEITTFGLDVSKVAIKAAAKRYPQ-VTFCV---ASSHRLPF 143 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHH--------HT-------CTTSEEEEEESCHHHHHHHHHHCTT-SEEEE---CCTTSCSB
T ss_pred CCCCEEEEeCCCCcHHHHHHH--------HH-------CCCCEEEEecchHhhhhhhhccccc-cccee---eehhhccC
Confidence 457899999999999998884 33 3567999999987665544444432 22333 47777779
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|+++|..++|++. .-++-|||||+|+++.+
T Consensus 144 ~~~sfD~v~~~~~~~~~~---------------------------------------------e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 144 SDTSMDAIIRIYAPCKAE---------------------------------------------ELARVVKPGGWVITATP 178 (268)
T ss_dssp CTTCEEEEEEESCCCCHH---------------------------------------------HHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeecCCHHHHH---------------------------------------------HHHHHhCCCcEEEEEee
Confidence 999999999988877732 12467999999999998
Q ss_pred cCCC
Q 018250 216 TGPS 219 (359)
Q Consensus 216 g~~~ 219 (359)
+.+.
T Consensus 179 ~~~~ 182 (268)
T d1p91a_ 179 GPRH 182 (268)
T ss_dssp CTTT
T ss_pred CCcc
Confidence 8664
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.85 E-value=4.9e-08 Score=88.12 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=97.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
++..+|+|+|||+|..++.++ ++ .|+++++.-|||. ....-.. .-=+..++|+|++. .
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~-----vi~~~~~-~~ri~~~~gd~~~~-~ 137 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELII--------SK-------YPLIKGINFDLPQ-----VIENAPP-LSGIEHVGGDMFAS-V 137 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHTTCCC-CTTEEEEECCTTTC-C
T ss_pred cCCcEEEEecCCCcHHHHHHH--------HH-------CCCCeEEEecchh-----hhhccCC-CCCeEEecCCcccc-c
Confidence 456799999999999998884 44 4678999999995 2221111 11244567899865 4
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|.. |+++.+..||..++ ++-.+.|+.-++.|+|||++++.-.
T Consensus 138 p~~--D~~~l~~vLh~~~d------------------------------------e~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 138 PQG--DAMILKAVCHNWSD------------------------------------EKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp CCE--EEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc--eEEEEehhhhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 643 99999999996432 1344578889999999999888776
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
-.++...... .......+ +...-+...| --+|.+|++++++++| |+..++..
T Consensus 180 v~~~~~~~~~--~~~~~~~~-d~~m~~~~~g--------------~ert~~e~~~ll~~AG-F~~v~v~~ 231 (244)
T d1fp1d2 180 ILPEEPNTSE--ESKLVSTL-DNLMFITVGG--------------RERTEKQYEKLSKLSG-FSKFQVAC 231 (244)
T ss_dssp EECSSCCSSH--HHHHHHHH-HHHHHHHHSC--------------CCEEHHHHHHHHHHTT-CSEEEEEE
T ss_pred EecCCCCCch--HHHHHHHH-HHHHHhhCCC--------------cCCCHHHHHHHHHHcC-CCceEEEe
Confidence 5443211100 00011111 1111111223 3468999999999999 98877654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.70 E-value=2.8e-07 Score=82.69 Aligned_cols=149 Identities=18% Similarity=0.116 Sum_probs=93.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~ 133 (359)
.+..+|+|+|||+|..++.++ ++ .|+.+++.-|||.- +.. ..--+..++|+|++.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v--------i~~~~~~~r~~~~~~d~~~~ 136 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIV--------SK-------YPTIKGINFDLPHV--------IEDAPSYPGVEHVGGDMFVS 136 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHH--------HH-------CTTSEEEEEECTTT--------TTTCCCCTTEEEEECCTTTC
T ss_pred cCCcEEEEecCCCcHHHHHHH--------HH-------CCCCeEEEcccHHh--------hhhcccCCceEEeccccccc
Confidence 345789999999999999885 44 46789999999972 221 111245567898764
Q ss_pred CCCCCceeEEEecCccc-ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 LFPKSTLHVVNSFNAMH-WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l~p~~s~d~~~S~~alH-WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.|.. |+.+..+.+| | | ..|...+|+.-++.|+|||++++
T Consensus 137 -~P~a--d~~~l~~vlh~~----~---------------------------------d~~~~~iL~~~~~al~pgg~~li 176 (243)
T d1kyza2 137 -IPKA--DAVFMKWICHDW----S---------------------------------DEHCLKFLKNCYEALPDNGKVIV 176 (243)
T ss_dssp -CCCC--SCEECSSSSTTS----C---------------------------------HHHHHHHHHHHHHHCCSSSCEEE
T ss_pred -CCCc--ceEEEEEEeecC----C---------------------------------HHHHHHHHHHHHHhcCCCceEEE
Confidence 5754 4444455555 4 1 12556688899999999999888
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHH--cCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAK--MGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~--eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.-.-.++.... ..... ..+...+.-|+. .| ..+|.+|++++++++| |+..++...
T Consensus 177 ~d~~~~~~~~~---~~~~~-~~~~~d~~ml~~~~~g--------------~ert~~e~~~ll~~AG-f~~vkv~~~ 233 (243)
T d1kyza2 177 AECILPVAPDS---SLATK-GVVHIDVIMLAHNPGG--------------KERTQKEFEDLAKGAG-FQGFKVHCN 233 (243)
T ss_dssp EECEECSSCCC---CHHHH-HHHHHHHHHHHHCSSC--------------CCEEHHHHHHHHHHHC-CSCEEEEEE
T ss_pred EEEEecCCCCC---chhhH-HHHHHHHHHHhhCCCC--------------CcCCHHHHHHHHHHcC-CCcEEEEEe
Confidence 74432221110 00011 111111222322 22 3578999999999999 998877643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.59 E-value=2e-07 Score=83.95 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=96.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l 134 (359)
.+..+|+|+|||+|..++.++ ++ .|+++++.-|||. .....+. .+ +..++|+|++.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~-----vi~~~~~~~r--v~~~~gD~f~~- 135 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIIC--------ET-------FPKLKCIVFDRPQ-----VVENLSGSNN--LTYVGGDMFTS- 135 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHTTCCCBTT--EEEEECCTTTC-
T ss_pred cCceEEEEecCCccHHHHHHH--------Hh-------CCCCeEEEecCHH-----HHHhCcccCc--eEEEecCcccC-
Confidence 345789999999999988874 55 4678999999985 2233322 22 44567899875
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC---ceeE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG---GLMV 211 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG---G~lv 211 (359)
.| ..|+++....||..++ ++-.++|+..++.|+|| |+++
T Consensus 136 ~p--~aD~~~l~~vLHdw~d------------------------------------~~~~~iL~~~~~al~pgg~~~~ll 177 (244)
T d1fp2a2 136 IP--NADAVLLKYILHNWTD------------------------------------KDCLRILKKCKEAVTNDGKRGKVT 177 (244)
T ss_dssp CC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred CC--CCcEEEEEeecccCCh------------------------------------HHHHHHHHHHHHHcCcccCCcEEE
Confidence 34 4699999999995332 24456888899999999 5555
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHH---HHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDL---AKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~l---v~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+.-.-.++.... .....+ ..+.+| +-.| -.||.+|++++++++| |++.++...
T Consensus 178 i~e~~~~~~~~~------~~~~~~-~~~~dl~m~~~~G--------------~ert~~e~~~ll~~AG-f~~~~i~~~ 233 (244)
T d1fp2a2 178 IIDMVIDKKKDE------NQVTQI-KLLMDVNMACLNG--------------KERNEEEWKKLFIEAG-FQHYKISPL 233 (244)
T ss_dssp EEECEECTTTSC------HHHHHH-HHHHHHHGGGGTC--------------CCEEHHHHHHHHHHTT-CCEEEEEEE
T ss_pred EEEeecCCCCCC------chHHHH-HHHHHHHHHhCCC--------------cCCCHHHHHHHHHHcC-CceEEEEEC
Confidence 543322221100 011111 122222 2222 3579999999999999 998887554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=3.6e-08 Score=90.51 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=72.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccccc--cccCcccc-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYA--AGVPGSFH- 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~--~~vpgsfy- 131 (359)
..+|||+|||+|..|+.++ ++ ..+|+..|+..++-...-+.... ...+. .....+|.
T Consensus 57 ~~~vLD~GcG~G~~~~~la--------~~---------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLV--------EE---------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp CCEEEESSCTTSHHHHHHH--------HT---------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred CCEEEEecCCCcHHHHHHH--------Hc---------CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 4689999999999999884 22 25899999998776654333221 10000 00011232
Q ss_pred --cCCCCCCceeEEEec-CcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 132 --GRLFPKSTLHVVNSF-NAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 132 --~~l~p~~s~d~~~S~-~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
..+.+.+++|+++|. .+++++...- .+ ..|...+|+..++-|||||
T Consensus 120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~---~~----------------------------~~~~~~~l~~~~~~LkpgG 168 (292)
T d1xvaa_ 120 LDKDVPAGDGFDAVICLGNSFAHLPDSK---GD----------------------------QSEHRLALKNIASMVRPGG 168 (292)
T ss_dssp HHHHSCCTTCEEEEEECSSCGGGSCCTT---SS----------------------------SHHHHHHHHHHHHTEEEEE
T ss_pred cccccCCCCCceEEEEecCchhhcCCcc---cC----------------------------hHHHHHHHHHHHHHcCcCc
Confidence 234567889999875 4788854321 11 1367789999999999999
Q ss_pred eeEEEec
Q 018250 209 LMVFSLI 215 (359)
Q Consensus 209 ~lvl~~~ 215 (359)
+|++.+.
T Consensus 169 ~li~~~~ 175 (292)
T d1xvaa_ 169 LLVIDHR 175 (292)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 9999875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.53 E-value=3.4e-08 Score=86.84 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=75.4
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc--
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG-- 132 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~-- 132 (359)
-.|+|+|||+|.+++.++ +. .|+..++..|+..+....+.+.... .. .++. |++..
T Consensus 31 PlvLeIGcG~G~~~~~lA--------~~-------~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~---~Da~~l~ 92 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMA--------KQ-------NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN---IDADTLT 92 (204)
T ss_dssp CEEEEECCTTSHHHHHHH--------HH-------CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEEC---CCGGGHH
T ss_pred ceEEEEEecCcHHHHHHH--------Hh-------CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcc---cchhhhh
Confidence 368999999999999885 33 4778999999988777666554322 22 2333 33332
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..||++++|.++.++...|..+... . .++ -...||+.-++-|||||.|++
T Consensus 93 ~~~~~~~~d~v~i~fp~P~~k~~h~--k---------~Rl-------------------~~~~~l~~~~r~LkpgG~l~i 142 (204)
T d2fcaa1 93 DVFEPGEVKRVYLNFSDPWPKKRHE--K---------RRL-------------------TYSHFLKKYEEVMGKGGSIHF 142 (204)
T ss_dssp HHCCTTSCCEEEEESCCCCCSGGGG--G---------GST-------------------TSHHHHHHHHHHHTTSCEEEE
T ss_pred cccCchhhhccccccccccchhhhc--c---------hhh-------------------hHHHHHHHHHHhCCCCcEEEE
Confidence 3589999999999999999432100 0 000 012488888999999999988
Q ss_pred Ee
Q 018250 213 SL 214 (359)
Q Consensus 213 ~~ 214 (359)
.+
T Consensus 143 ~T 144 (204)
T d2fcaa1 143 KT 144 (204)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.53 E-value=2.4e-07 Score=82.70 Aligned_cols=108 Identities=12% Similarity=0.038 Sum_probs=69.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~ 133 (359)
....+|||+|||+|..+..+. +.. |.-.||..|+..-+...+-..... ....+.+..... .
T Consensus 73 kpG~~VLDlGcGsG~~~~~la--------~~~-------~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~--~ 135 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVA--------DIA-------DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP--Q 135 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHH--------HHT-------TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG--G
T ss_pred CCCCEEEEeCEEcCHHHHHHH--------HhC-------CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC--c
Confidence 346899999999999888874 332 345899999987665544433322 222333322221 2
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
..++.+.|+.+++..+||.. +...+++...+-|||||++++.
T Consensus 136 ~~~~~~~~v~~i~~~~~~~~--------------------------------------~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 136 EYANIVEKVDVIYEDVAQPN--------------------------------------QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp GGTTTCCCEEEEEECCCSTT--------------------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccceeEEeeccccchH--------------------------------------HHHHHHHHHHHhcccCceEEEE
Confidence 23556677777777777732 2334677778899999999998
Q ss_pred eccCC
Q 018250 214 LITGP 218 (359)
Q Consensus 214 ~~g~~ 218 (359)
.-.+.
T Consensus 178 ~k~~~ 182 (230)
T d1g8sa_ 178 IKARS 182 (230)
T ss_dssp EEGGG
T ss_pred eeccc
Confidence 76544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.43 E-value=3.8e-07 Score=78.67 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=68.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C-CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P-RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~-~~~~~~~vpgsfy~ 132 (359)
....+|+|+|||+|..|+.+. +. .+ .++..|+........-+++. . ..+-+..+.+++++
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la--------~~-------~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~ 113 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALA--------DE-------VK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHG--------GG-------SS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred CCCCeEEEEeecCChhHHHHH--------hh-------cc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh
Confidence 345789999999999988763 22 12 67888887655544433221 1 11112223346655
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.++++++|+|+|+..+|+.. ..+..+|+.-.+-|+|||+|++
T Consensus 114 -~~~~~~fD~Ii~~~p~~~~~-------------------------------------~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 114 -NVKDRKYNKIITNPPIRAGK-------------------------------------EVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp -TCTTSCEEEEEECCCSTTCH-------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred -hhccCCceEEEEcccEEecc-------------------------------------hhhhhHHHHHHHhcCcCcEEEE
Confidence 56889999999988777621 1234577777888999999988
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
...
T Consensus 156 ~~~ 158 (194)
T d1dusa_ 156 VIQ 158 (194)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.43 E-value=1.4e-07 Score=82.78 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=75.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~l 134 (359)
-.|+|+|||+|.+++.++ +. .|+..++..|+..+....+.+.... .. .+..+-.-.+ ...
T Consensus 33 plvLdIGcG~G~~~~~lA--------~~-------~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l-~~~ 96 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMA--------KQ-------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDY 96 (204)
T ss_dssp CEEEEESCTTSHHHHHHH--------HH-------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGT
T ss_pred CeEEEEeccCCHHHHHHH--------HH-------CCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHH-hhh
Confidence 468999999999999885 33 4778999999988777666554322 22 2333322233 356
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
||++|+|.++.++.-.|-.+-.. . .++ =-..||+.-++-|||||.|.+.+
T Consensus 97 ~~~~~~~~i~i~fPdPw~K~~h~--k---------rRl-------------------~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 97 FEDGEIDRLYLNFSDPWPKKRHE--K---------RRL-------------------TYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp SCTTCCSEEEEESCCCCCSGGGG--G---------GST-------------------TSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCceehhcccccccccchhhh--h---------hhh-------------------hHHHHHHHHHHhCCCCcEEEEEE
Confidence 89999999999999999432100 0 000 01248888899999999998876
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=4.8e-07 Score=84.48 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=66.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
.-+|||+|||+|..|+.++ +.. .-+|+..|... .- ...+.... ..--+.-+-|+..+..
T Consensus 39 ~~~VLDlGcGtG~ls~~aa--------~~G--------a~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l~ 100 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAA--------KHG--------AKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDVH 100 (328)
T ss_dssp TCEEEEETCTTSHHHHHHH--------HTC--------CSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred cCEEEEeCCCCCHHHHHHH--------HhC--------CCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhcc
Confidence 3689999999999988764 221 13789999764 22 22222111 1111222234666667
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+|++++|+++|....+.+... .++..++.+|.+-|||||+++
T Consensus 101 ~~~~~~D~i~se~~~~~~~~e-----------------------------------~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 101 LPFPKVDIIISEWMGYFLLYE-----------------------------------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CSSSCEEEEEECCCBTTBSTT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred CcccceeEEEEEecceeeccc-----------------------------------hhHHHHHHHHHhccCCCeEEE
Confidence 899999999998888775431 245568888999999999985
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=2.4e-07 Score=83.94 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=61.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.+. +. ..+|+..|.....-...-++... ..-+.. ++.. ..
T Consensus 121 g~~VLDiGcGsG~l~i~aa--------~~---------g~~V~gvDis~~av~~A~~na~~n~~~~~~~~---~d~~-~~ 179 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAE--------KL---------GGKALGVDIDPMVLPQAEANAKRNGVRPRFLE---GSLE-AA 179 (254)
T ss_dssp TCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEE---SCHH-HH
T ss_pred cCEEEEcccchhHHHHHHH--------hc---------CCEEEEEECChHHHHHHHHHHHHcCCceeEEe---cccc-cc
Confidence 4699999999999888662 21 24789999988666554443221 112332 2332 35
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+|.+++|+++++...|- +..++..-++-|||||+|+++
T Consensus 180 ~~~~~fD~V~ani~~~~-----------------------------------------l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 180 LPFGPFDLLVANLYAEL-----------------------------------------HAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp GGGCCEEEEEEECCHHH-----------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhhcccccc-----------------------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 68899999999743332 223444556789999999986
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=2.6e-07 Score=81.41 Aligned_cols=78 Identities=12% Similarity=-0.001 Sum_probs=54.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~ 132 (359)
...+|||+|||+|..|..+. +.+. +.-.|+..|.........-+.+.. +..++. |+..+
T Consensus 75 ~g~~VLdiG~GtG~~s~~la--------~~~~------~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~---~d~~~ 137 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMS--------RVVG------EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC---GDGYY 137 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHH--------HHHC------TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCGGG
T ss_pred ccceEEEecCccchhHHHHH--------HHhC------CCCcEEEeecchhhHHHhhhhHhhhccccccccc---CchHH
Confidence 45799999999999999874 3332 345788888776555544444321 122333 46666
Q ss_pred CCCCCCceeEEEecCcccc
Q 018250 133 RLFPKSTLHVVNSFNAMHW 151 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHW 151 (359)
-+++++++|.|++..++++
T Consensus 138 ~~~~~~~fD~I~~~~~~~~ 156 (213)
T d1dl5a1 138 GVPEFSPYDVIFVTVGVDE 156 (213)
T ss_dssp CCGGGCCEEEEEECSBBSC
T ss_pred ccccccchhhhhhhccHHH
Confidence 6778889999999999987
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.36 E-value=5e-07 Score=83.95 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=68.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~ 135 (359)
.-+|||+|||+|..|+.++ +.. ..+|+..|...+ ...+-+..... .--+.-+.|+..+..+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa--------~~G--------a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~ 96 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAA--------KAG--------ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL 96 (316)
T ss_dssp TCEEEEETCTTSHHHHHHH--------HTT--------CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred cCEEEEEecCCcHHHHHHH--------HhC--------CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc
Confidence 3579999999999888774 221 137899997653 33222221110 1112222356767678
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
|.+++|+++|....|.+-. ..++..+|.++.+-|+|||+++
T Consensus 97 ~~~~~D~ivs~~~~~~l~~-----------------------------------e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 97 PVEKVDIIISEWMGYCLFY-----------------------------------ESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp SSSCEEEEEECCCBBTBTB-----------------------------------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEeeeeeeeeecc-----------------------------------HHHHHHHHHHHHhcCCCCeEEE
Confidence 9999999999877777432 1245678999999999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.1e-06 Score=81.22 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=72.9
Q ss_pred HHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh
Q 018250 36 ELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT 115 (359)
Q Consensus 36 ~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~ 115 (359)
....+||.+.... .+.-+|||+|||+|..|+.++ +.. ..+|+..|...+.-. ..+.
T Consensus 21 ~~y~~ai~~~~~~-------~~~~~VLDiGcG~G~lsl~aa--------~~G--------a~~V~aid~s~~~~~-a~~~ 76 (311)
T d2fyta1 21 ESYRDFIYQNPHI-------FKDKVVLDVGCGTGILSMFAA--------KAG--------AKKVLGVDQSEILYQ-AMDI 76 (311)
T ss_dssp HHHHHHHHHCGGG-------TTTCEEEEETCTTSHHHHHHH--------HTT--------CSEEEEEESSTHHHH-HHHH
T ss_pred HHHHHHHHhcccc-------CCcCEEEEECCCCCHHHHHHH--------HcC--------CCEEEEEeCHHHHHH-HHHH
Confidence 3445666553321 234689999999999888774 221 138999998764322 1111
Q ss_pred CC--CCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHH
Q 018250 116 LP--PRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDF 193 (359)
Q Consensus 116 l~--~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~ 193 (359)
.. ....-+.-+.|+..+.-+|+.++|+++|....|.+.. ...+
T Consensus 77 ~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~-----------------------------------e~~~ 121 (311)
T d2fyta1 77 IRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF-----------------------------------ESML 121 (311)
T ss_dssp HHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTT-----------------------------------TCHH
T ss_pred HHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeeccc-----------------------------------cccc
Confidence 11 1111122233566566689999999999766665321 1135
Q ss_pred HHHHHHHHHhhccCceeEE
Q 018250 194 ESILNARAEELVPGGLMVF 212 (359)
Q Consensus 194 ~~fL~~Ra~EL~pGG~lvl 212 (359)
..++.+|.+-|+|||+++-
T Consensus 122 ~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 122 DSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp HHHHHHHHHHEEEEEEEES
T ss_pred HHHHHHHHhcCCCCcEEec
Confidence 5688889999999999973
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=6.3e-07 Score=79.52 Aligned_cols=81 Identities=12% Similarity=-0.066 Sum_probs=53.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-C-----cccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-R-----KYYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~-----~~~~~~vpgsf 130 (359)
...+|||+|||+|..|..++ +.. .|.-+|+.-|.-.......-+.+.. . .-.+..+-|+.
T Consensus 76 ~g~~VLdiG~GsGy~ta~la--------~l~------~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFA--------RMV------GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHH------CTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHH--------HHh------CCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 35799999999999998774 222 2345788888876555444333321 0 00122223566
Q ss_pred ccCCCCCCceeEEEecCcccc
Q 018250 131 HGRLFPKSTLHVVNSFNAMHW 151 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHW 151 (359)
+.-.++.+++|.|++..++++
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ 162 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPV 162 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSS
T ss_pred ccccchhhhhhhhhhhcchhh
Confidence 677778899999999999887
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.19 E-value=1.3e-06 Score=76.62 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=64.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
+..+|+|+|||+|..+..+. +.. |+-+|+.-|+...+...+-+.... .-.++.+....-..--
T Consensus 56 pg~~VLDlGcG~G~~~~~la--------~~v-------~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~ 120 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLA--------DIV-------DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS 120 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHH--------HHT-------TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT
T ss_pred CCCEEEEeCCcCCHHHHHHH--------Hhc-------cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccc
Confidence 45899999999999777773 332 345899999998777665443321 2223333222111111
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.....+|++++....+| |...||+.-.+-|||||++++..
T Consensus 121 ~~~~~vd~v~~~~~~~~----------------------------------------~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 121 GIVEKVDLIYQDIAQKN----------------------------------------QIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp TTCCCEEEEEECCCSTT----------------------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccceEEEEEecccChh----------------------------------------hHHHHHHHHHHHhccCCeEEEEE
Confidence 22245666665322222 33457777889999999999987
Q ss_pred ccC
Q 018250 215 ITG 217 (359)
Q Consensus 215 ~g~ 217 (359)
-.+
T Consensus 161 ~~~ 163 (209)
T d1nt2a_ 161 KAR 163 (209)
T ss_dssp EHH
T ss_pred Ecc
Confidence 544
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.16 E-value=1.1e-05 Score=71.46 Aligned_cols=108 Identities=10% Similarity=-0.025 Sum_probs=69.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
.-.+|||+|||+|..|..+. +... |.-.||..|+.......+-+.... ....+.+..+.-..-.
T Consensus 73 pG~~VLDlGaGsG~~t~~la--------~~VG------~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~ 138 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVS--------DIVG------WEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR 138 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHH--------HHHC------TTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT
T ss_pred CCCEEEEeccCCCHHHHHHH--------HHhC------CCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccc
Confidence 45899999999999999885 3322 345899999998666555444332 1223333333222223
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++..++|++++..+.++ +-..+++...+-|||||+++++.
T Consensus 139 ~~~~~vD~i~~d~~~~~----------------------------------------~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 139 ALVPKVDVIFEDVAQPT----------------------------------------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp TTCCCEEEEEECCCSTT----------------------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceEEEEEEccccc----------------------------------------hHHHHHHHHHHhcccCCeEEEEE
Confidence 44568999987533211 22246777788999999999988
Q ss_pred ccCC
Q 018250 215 ITGP 218 (359)
Q Consensus 215 ~g~~ 218 (359)
..+.
T Consensus 179 ka~~ 182 (227)
T d1g8aa_ 179 KSRS 182 (227)
T ss_dssp EGGG
T ss_pred ECCc
Confidence 6543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.3e-06 Score=77.16 Aligned_cols=107 Identities=14% Similarity=0.060 Sum_probs=62.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--Ccc-cccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKY-YAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~-~~~~vpgsfy~~ 133 (359)
...+|||+|||+|..+..++ +. . ..+++.-|+.......+-+.... ... +..+ .......
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a--------~~-------~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 115 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQ--------EA-------P-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG-LWEDVAP 115 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHH--------TS-------C-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES-CHHHHGG
T ss_pred CCCeEEEeeccchHHHHHHH--------Hc-------C-CCeEEEeCCCHHHHHHHHHHhhhcccccccccc-ccccccc
Confidence 35789999999999887763 11 1 24788888887554443322221 111 1111 0122233
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
-+|++++|.++.-....... .. ...|...||+.-++-|||||+|++.
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~--~~-------------------------------~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEE--TW-------------------------------HTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGG--GT-------------------------------TTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccceeecccccccc--cc-------------------------------cccCHHHHHHHHHHHcCCCcEEEEE
Confidence 47889999998422211100 00 0125667888889999999999763
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.11 E-value=9.2e-07 Score=79.84 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=63.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..|+.++.. . .|.-.|+..|.........-+++.. ..--+...-+++. ..+
T Consensus 86 G~rVLEiG~GsG~lt~~la~~--------v------~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~-~~~ 150 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYA--------L------NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA-DFI 150 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHH--------H------TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT-TCC
T ss_pred cCEEEEeeeeCcHHHHHHHHH--------h------CCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee-ccc
Confidence 489999999999999988522 1 1345888888776433333333321 0011111224554 347
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|.++.. +|..- .+|..-++-|||||++++..+
T Consensus 151 ~~~~fD~V~ld--------~p~p~-----------------------------------~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 151 SDQMYDAVIAD--------IPDPW-----------------------------------NHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CSCCEEEEEEC--------CSCGG-----------------------------------GSHHHHHHTEEEEEEEEEEES
T ss_pred ccceeeeeeec--------CCchH-----------------------------------HHHHHHHHhcCCCceEEEEeC
Confidence 88999999863 23210 145567889999999998754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=2.5e-06 Score=77.47 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..|+.++.. . .|+-+|+--|.-.-.....-+++.. ...-+.-+-+++.+
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~--------v------gp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~ 161 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRA--------V------GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 161 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--------H------CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred CCCEEEecCcCCcHHHHHHHHh--------h------CCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence 3589999999999999998622 1 2456888888876333222222210 01111122347777
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.-+|++++|.+|.. +|..- .+|..-++.|||||++++
T Consensus 162 ~~~~~~~fDaV~ld--------lp~P~-----------------------------------~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 162 SELPDGSVDRAVLD--------MLAPW-----------------------------------EVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp CCCCTTCEEEEEEE--------SSCGG-----------------------------------GGHHHHHHHEEEEEEEEE
T ss_pred ccccCCCcceEEEe--------cCCHH-----------------------------------HHHHHHHhccCCCCEEEE
Confidence 78999999999862 44321 145567899999999988
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
..+
T Consensus 199 ~~P 201 (264)
T d1i9ga_ 199 YVA 201 (264)
T ss_dssp EES
T ss_pred EeC
Confidence 774
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.07 E-value=7.1e-07 Score=76.42 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=67.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~ 133 (359)
.+.-+|+|+|||+|..|+.++ +. --+|+..|.-.+.-...-+++... .--+.-+.|++.+-
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA--------~~---------~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~ 94 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELA--------GR---------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHH--------TT---------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred CCCCEEEEEECCeEccccccc--------cc---------ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc
Confidence 346789999999999998774 11 127889998876655554443210 00122234577777
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+++..++|.+++.-..+ ++..+++.-.+-|+|||++++.
T Consensus 95 ~~~~~~~D~v~~~~~~~-----------------------------------------~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 95 LCKIPDIDIAVVGGSGG-----------------------------------------ELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp HTTSCCEEEEEESCCTT-----------------------------------------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccCCcCEEEEeCccc-----------------------------------------cchHHHHHHHHHhCcCCEEEEE
Confidence 78889999999853211 1233566677889999999987
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 134 ~~ 135 (186)
T d1l3ia_ 134 AI 135 (186)
T ss_dssp EC
T ss_pred ee
Confidence 64
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=2e-05 Score=73.37 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=60.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC------------CCcc-cc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP------------PRKY-YA 123 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~------------~~~~-~~ 123 (359)
...+|+|+|||+|..++.++ +.+ +-..++.-|+..+.....-+.+. ...+ |.
T Consensus 151 ~~~~vlD~GcG~G~~~~~~a--------~~~-------~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~ 215 (328)
T d1nw3a_ 151 DDDLFVDLGSGVGQVVLQVA--------AAT-------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 215 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHH--------HHC-------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHH--------HHh-------CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence 35689999999999998774 221 22367777776644332211110 0111 22
Q ss_pred cccCcccccCCCCCC--ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 124 AGVPGSFHGRLFPKS--TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARA 201 (359)
Q Consensus 124 ~~vpgsfy~~l~p~~--s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra 201 (359)
. |+|.+..+.++ ..|+++++..+|| | |+...|+...
T Consensus 216 ~---gd~~~~~~~~~~~~advi~~~~~~f~----~-----------------------------------~~~~~l~e~~ 253 (328)
T d1nw3a_ 216 R---GDFLSEEWRERIANTSVIFVNNFAFG----P-----------------------------------EVDHQLKERF 253 (328)
T ss_dssp E---CCTTSHHHHHHHHHCSEEEECCTTTC----H-----------------------------------HHHHHHHHHH
T ss_pred E---CcccccccccccCcceEEEEcceecc----h-----------------------------------HHHHHHHHHH
Confidence 2 35544334433 3478888777676 1 3445677788
Q ss_pred HhhccCceeEEEe
Q 018250 202 EELVPGGLMVFSL 214 (359)
Q Consensus 202 ~EL~pGG~lvl~~ 214 (359)
++|||||++|++-
T Consensus 254 r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 254 ANMKEGGRIVSSK 266 (328)
T ss_dssp TTCCTTCEEEESS
T ss_pred HhCCCCcEEEEec
Confidence 9999999998753
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=1.7e-05 Score=72.30 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=73.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~ 132 (359)
..+.+|+|+|||||..++.++ .. .|..+|+..|....-.+..-++... +.+ .-+-+++++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la--------~~-------~p~~~v~avDis~~Al~~A~~Na~~~~~~~v--~~~~~d~~~ 169 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALA--------SE-------RPDCEIIAVDRMPDAVSLAQRNAQHLAIKNI--HILQSDWFS 169 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHH--------HH-------CTTSEEEEECSSHHHHHHHHHHHHHHTCCSE--EEECCSTTG
T ss_pred ccccceeeeehhhhHHHHHHH--------hh-------CCcceeeeccchhHHHhHHHHHHHHhCcccc--eeeeccccc
Confidence 456889999999999999884 22 3678999999876554444333221 222 222346655
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
. +|++.+|+++|| |+-+....-... ...+ ..-|.... .--+-....+..+++.-.+-|+|||.+++
T Consensus 170 ~-~~~~~fDlIvsN---------PPYi~~~~~~~~-~~v~--~~eP~~AL-~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 170 A-LAGQQFAMIVSN---------PPYIDEQDPHLQ-QGDV--RFEPLTAL-VAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp G-GTTCCEEEEEEC---------CCCBCTTCHHHH-SSGG--GSSCSTTT-BCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred c-cCCCceeEEEec---------chhhhhhhhccc-cccc--ccchhhhc-ccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 3 467899999996 443322110000 0000 00000000 00012234556788888888999999999
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
...
T Consensus 236 Eig 238 (274)
T d2b3ta1 236 EHG 238 (274)
T ss_dssp ECC
T ss_pred EEC
Confidence 863
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.73 E-value=2e-05 Score=69.63 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=42.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-Cc-ccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RK-YYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~-~~~~~vpgsfy~~l 134 (359)
...+|||+|||+|..|..+.. .. -+|+..|.-..-....-+.+.. .. -+.. |+.+.-.
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~--------l~---------~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~---~d~~~g~ 129 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAE--------IV---------DKVVSVEINEKMYNYASKLLSYYNNIKLIL---GDGTLGY 129 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHH--------HS---------SEEEEEESCHHHHHHHHHHHTTCSSEEEEE---SCGGGCC
T ss_pred ccceEEEecCCCCHHHHHHHH--------Hh---------cccccccccHHHHHHHHHHHhccccccccc---Cchhhcc
Confidence 357999999999999987642 11 1455555444333222222221 11 1222 2333323
Q ss_pred CCCCceeEEEecCcccc
Q 018250 135 FPKSTLHVVNSFNAMHW 151 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHW 151 (359)
.+.+.+|.|+...++++
T Consensus 130 ~~~~pfD~Iiv~~a~~~ 146 (224)
T d1vbfa_ 130 EEEKPYDRVVVWATAPT 146 (224)
T ss_dssp GGGCCEEEEEESSBBSS
T ss_pred hhhhhHHHHHhhcchhh
Confidence 34567999999988775
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.68 E-value=4.3e-05 Score=69.09 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=63.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~ 133 (359)
....+|+|+|||+|..|+.++ +.. .|.-+|+-.|.-.......-+.+.. -.-.+...-++. ..
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA--------~~~------~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~ 166 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLA--------RAV------GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-SE 166 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHH--------HHT------TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GG
T ss_pred CCCCEEEECCCCCCHHHHHHH--------HHh------CCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-cc
Confidence 346899999999999999885 222 2456899999887554444333321 011111122333 33
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.++..++|.++-- +|.. | .+|+.-.+-|||||++++.
T Consensus 167 ~~~~~~~D~V~~d--------~p~p--------~---------------------------~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 167 GFDEKDVDALFLD--------VPDP--------W---------------------------NYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp CCSCCSEEEEEEC--------CSCG--------G---------------------------GTHHHHHHHEEEEEEEEEE
T ss_pred cccccceeeeEec--------CCCH--------H---------------------------HHHHHHHhhcCCCCEEEEE
Confidence 4677889988642 2321 0 1456678899999999987
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
.+
T Consensus 204 ~P 205 (266)
T d1o54a_ 204 CP 205 (266)
T ss_dssp ES
T ss_pred eC
Confidence 64
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=1.9e-05 Score=75.80 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=28.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchH
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFN 110 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn 110 (359)
..+|+|||||+|..++.++ +.+ +..+++..|+..+.-.
T Consensus 217 gd~fLDLGCG~G~~vl~aA--------~~~-------g~~~v~GIDiS~~~i~ 254 (406)
T d1u2za_ 217 GDTFMDLGSGVGNCVVQAA--------LEC-------GCALSFGCEIMDDASD 254 (406)
T ss_dssp TCEEEEESCTTSHHHHHHH--------HHH-------CCSEEEEEECCHHHHH
T ss_pred CCEEEeCCCCCcHHHHHHH--------HHc-------CCCeEEEEeCCHHHHH
Confidence 4689999999999999885 332 2247888998875543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.60 E-value=5.4e-05 Score=64.96 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=67.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------------Ccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------------RKYYA 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------------~~~~~ 123 (359)
..++||.+.|||||-=.-.++-.+ .+.... ....++++..|+...-....-+.... .+||.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l----~e~~~~---~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~ 95 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITL----ADALGM---APGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFM 95 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHH----HHHHCS---CTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEE
T ss_pred CCCeEEEEeCCCCchhHHHHHHHH----HHhhhh---cCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhcee
Confidence 468999999999998554443222 222211 23468999999976443322222111 12332
Q ss_pred cccCc---------------ccc------cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH
Q 018250 124 AGVPG---------------SFH------GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH 182 (359)
Q Consensus 124 ~~vpg---------------sfy------~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~ 182 (359)
-...+ .|. ....|.+.+|+|+|-+.|+.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~---------------------------- 147 (193)
T d1af7a2 96 RGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK---------------------------- 147 (193)
T ss_dssp ECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH----------------------------
T ss_pred ecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCH----------------------------
Confidence 21111 011 11234678999999999998653
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 183 ETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 183 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
......|+.-++-|+|||.|++
T Consensus 148 --------~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 148 --------TTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp --------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred --------HHHHHHHHHHHHHhCCCcEEEE
Confidence 1223467778899999998764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.48 E-value=5.6e-05 Score=66.58 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=50.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------CcccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RKYYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~~~~~~vpgsf 130 (359)
+..+|||+|||||+.|..+. +.+...+ ..+...|+.-|.-..-+....+.+.. .-.-+.-+.|+.
T Consensus 80 ~g~~VLeIGtGsGY~ta~la--------~l~g~~g-~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~ 150 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFY--------RYIKAKG-VDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 150 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHH--------HHHHHSC-CCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHH--------HHhhhcc-CCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc
Confidence 45899999999999999884 2222111 12344677666544222222222111 000112222455
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCc
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPK 157 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~ 157 (359)
.+-..+.+.+|.|++..+++ ++|.
T Consensus 151 ~~~~~~~~~fD~Iiv~~a~~---~~p~ 174 (223)
T d1r18a_ 151 RKGYPPNAPYNAIHVGAAAP---DTPT 174 (223)
T ss_dssp GGCCGGGCSEEEEEECSCBS---SCCH
T ss_pred ccccccccceeeEEEEeech---hchH
Confidence 55566778999999998874 4564
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.32 E-value=0.00029 Score=61.49 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=43.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC---CC-CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL---PP-RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l---~~-~~~~~~~vpgsfy~ 132 (359)
...+|+|+|||||..|..+.. .+. -+|+.-|.-..-....-+.+ .- +-.+.. |+-..
T Consensus 78 ~g~~VLeIGsGsGY~taila~--------l~g--------~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~---gd~~~ 138 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISE--------IVK--------TDVYTIERIPELVEFAKRNLERAGVKNVHVIL---GDGSK 138 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHH--------HHC--------SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCGGG
T ss_pred ccceEEEecCCCChhHHHHHH--------hhC--------ceeEEEeccHHHHHHHHHHHHHcCCceeEEEE---Ccccc
Confidence 357999999999999987742 111 13444433321111111111 11 112333 34444
Q ss_pred CCCCCCceeEEEecCcccccCCCCc
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPK 157 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~ 157 (359)
-..+.+.+|.|+...++.. +|.
T Consensus 139 g~~~~~pfD~Iiv~~a~~~---ip~ 160 (215)
T d1jg1a_ 139 GFPPKAPYDVIIVTAGAPK---IPE 160 (215)
T ss_dssp CCGGGCCEEEEEECSBBSS---CCH
T ss_pred CCcccCcceeEEeeccccc---CCH
Confidence 4556788999999888864 565
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00038 Score=64.49 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=26.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
..+|+|+|||+|..|+.++..+ .|+-+|+--|.-.
T Consensus 99 G~rVLE~GtGsG~lt~~LAr~v--------------g~~G~V~t~E~~~ 133 (324)
T d2b25a1 99 GDTVLEAGSGSGGMSLFLSKAV--------------GSQGRVISFEVRK 133 (324)
T ss_dssp TCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEESSH
T ss_pred CCEEEEecccccHHHHHHHHHh--------------CCCcEEEEecCCH
Confidence 5799999999999999986321 1345777777754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.01 E-value=0.00018 Score=66.52 Aligned_cols=112 Identities=12% Similarity=-0.012 Sum_probs=67.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~~ 133 (359)
.-+|+|++||+|..|+.++. . ..+|+..|.....-...-++... +--|+.+-...+.++
T Consensus 146 g~rVLDl~~gtG~~s~~~a~--------g---------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~ 208 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLAL--------G---------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRR 208 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHH--------H---------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHH
T ss_pred CCeeeccCCCCcHHHHHHHh--------c---------CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhh
Confidence 57999999999999987631 1 13778888876554444333211 112333322223233
Q ss_pred C-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 L-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+ -..+.+|+|++. .|..... ... ...+.+++..++..-.+-|+|||.|++
T Consensus 209 ~~~~~~~fD~Vi~D--------pP~~~~~----------------~~~-----~~~~~~~~~~l~~~a~~lLkpGG~Lv~ 259 (318)
T d1wxxa2 209 LEKEGERFDLVVLD--------PPAFAKG----------------KKD-----VERAYRAYKEVNLRAIKLLKEGGILAT 259 (318)
T ss_dssp HHHTTCCEEEEEEC--------CCCSCCS----------------TTS-----HHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hHhhhcCCCEEEEc--------CCccccc----------------hHH-----HHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3 245789999983 3332111 111 233456777899999999999999988
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
+..
T Consensus 260 ~sc 262 (318)
T d1wxxa2 260 ASC 262 (318)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.59 E-value=0.0024 Score=56.99 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=46.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|+.|+.++ ++ ...+|+..|+-.+-+..+-+++.. ..+ ..+.|+..
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a--------~~--------~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v--~~~~~D~~- 167 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIA--------VY--------GKAKVIAIEKDPYTFKFLVENIHLNKVEDRM--SAYNMDNR- 167 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHH--------HH--------TCCEEEEECCCHHHHHHHHHHHHHTTCTTTE--EEECSCTT-
T ss_pred CccEEEECcceEcHHHHHHH--------Hh--------CCcEEEEecCCHHHHHHHHHHHHHhCCCceE--EEEEcchH-
Confidence 35789999999999999874 22 124899999987766666554321 122 22234543
Q ss_pred CCCCCCceeEEEe
Q 018250 133 RLFPKSTLHVVNS 145 (359)
Q Consensus 133 ~l~p~~s~d~~~S 145 (359)
.+.+.+.+|.|++
T Consensus 168 ~~~~~~~~D~Ii~ 180 (260)
T d2frna1 168 DFPGENIADRILM 180 (260)
T ss_dssp TCCCCSCEEEEEE
T ss_pred HhccCCCCCEEEE
Confidence 3456788998876
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=96.55 E-value=0.0005 Score=57.58 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=40.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~~ 133 (359)
.-+|+|+|||+|..++..+ .+ ..++++.|.-......+-+++.. .++... ..-.|...
T Consensus 42 g~~vLDl~~G~G~~~i~a~--------~~---------ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~-~~d~~~~~ 103 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAA--------SE---------GWEAVLVEKDPEAVRLLKENVRRTGLGARVVAL-PVEVFLPE 103 (171)
T ss_dssp CCEEEEETCSSCHHHHHHH--------HT---------TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECS-CHHHHHHH
T ss_pred CCeEEEeccccchhhhhhh--------hc---------cchhhhcccCHHHHhhhhHHHHhhccccceeee-ehhccccc
Confidence 4589999999999887653 22 24677888877665555444321 111111 11122222
Q ss_pred C-CCCCceeEEEe
Q 018250 134 L-FPKSTLHVVNS 145 (359)
Q Consensus 134 l-~p~~s~d~~~S 145 (359)
. .+..++|+||+
T Consensus 104 ~~~~~~~fD~If~ 116 (171)
T d1ws6a1 104 AKAQGERFTVAFM 116 (171)
T ss_dssp HHHTTCCEEEEEE
T ss_pred ccccCCccceeEE
Confidence 2 45578999987
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.50 E-value=0.0088 Score=54.72 Aligned_cols=111 Identities=16% Similarity=0.076 Sum_probs=66.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-----CCcccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-----PRKYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-----~~~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..|+.++ .. . ..+|+..|+...--...-+++. .+.-|.. |+.++
T Consensus 146 g~~VLDl~~g~G~~si~~a--------~~-------g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~---~d~~~ 206 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAA--------IA-------G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV---GSAFE 206 (324)
T ss_dssp TCEEEETTCTTTHHHHHHH--------HT-------T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHH
T ss_pred CCeeecccCcccchhhhhh--------hc-------C-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeee---chhhh
Confidence 4689999999999998774 11 0 1378888887644333322221 0111222 23332
Q ss_pred C---C-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 133 R---L-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 133 ~---l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
- + ....++|+|++. .|.....+ .. ...+.++...++..-.+-|+|||
T Consensus 207 ~~~~~~~~~~~fD~Vi~D--------pP~~~~~~----------------~~-----~~~~~~~y~~l~~~a~~ll~pGG 257 (324)
T d2as0a2 207 EMEKLQKKGEKFDIVVLD--------PPAFVQHE----------------KD-----LKAGLRAYFNVNFAGLNLVKDGG 257 (324)
T ss_dssp HHHHHHHTTCCEEEEEEC--------CCCSCSSG----------------GG-----HHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhHHHHhccCCCCchhcC--------CccccCCH----------------HH-----HHHHHHHHHHHHHHHHHHcCCCc
Confidence 2 2 245789999872 33321110 00 23345677789988889999999
Q ss_pred eeEEEecc
Q 018250 209 LMVFSLIT 216 (359)
Q Consensus 209 ~lvl~~~g 216 (359)
+|+++...
T Consensus 258 ~lv~~s~s 265 (324)
T d2as0a2 258 ILVTCSCS 265 (324)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998743
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0076 Score=53.19 Aligned_cols=76 Identities=9% Similarity=-0.050 Sum_probs=49.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccccc--cccCcc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYA--AGVPGS 129 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~--~~vpgs 129 (359)
....+|+|+|||+|..++.++ .+. |..+++..|....-....-+++.. .++.+ ......
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~--------~~~-------~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~ 124 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLG--------ATL-------NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHH--------HHH-------HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS
T ss_pred cccceEEEeCCCchHHHHHHH--------HhC-------CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHh
Confidence 446899999999999999885 232 356899999987665554444321 22222 222334
Q ss_pred cccCCC--CCCceeEEEec
Q 018250 130 FHGRLF--PKSTLHVVNSF 146 (359)
Q Consensus 130 fy~~l~--p~~s~d~~~S~ 146 (359)
++.-++ .++++|+++||
T Consensus 125 ~~~~~~~~~~~~fD~ivsN 143 (250)
T d2h00a1 125 LMDALKEESEIIYDFCMCN 143 (250)
T ss_dssp STTTSTTCCSCCBSEEEEC
T ss_pred hhhhhhhcccCceeEEEec
Confidence 444443 46789999993
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.32 E-value=0.0012 Score=53.81 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=30.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL 116 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l 116 (359)
+.-+|+|+|||||..++..+ .+. . -+|++.|.-.+-...+-+.+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~--------~rg-------a-~~v~~ve~~~~a~~~~~~n~ 57 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAV--------SRG-------M-SAAVLVEKNRKAQAIIQDNI 57 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHH--------HTT-------C-CEEEEECCCHHHHHHHHHHH
T ss_pred CCCeEEEcCCccCHHHHHHH--------HhC-------c-ceeeeehhchhhhhhhhhhh
Confidence 34689999999999888664 221 1 38889998766665554443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.003 Score=53.76 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=65.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--Cc-ccccccCcccc--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RK-YYAAGVPGSFH-- 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~-~~~~~vpgsfy-- 131 (359)
...+|+|.+||+|.-|..++ +++ |...|+.-|.-.......-+.+.. .+ .++. ++|-
T Consensus 23 ~~~~~lD~t~G~Gghs~~il--------~~~-------~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~---~~f~~~ 84 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAIL--------EHC-------PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFK---VSYREA 84 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHH--------HHC-------TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEE---CCGGGH
T ss_pred CCCEEEEecCCCcHHHHHHH--------hcC-------CCCeEEEeechHHHHHHHHHhhccccccccchh---HHHhhH
Confidence 35789999999999999885 442 456899999876665554444432 11 1222 2332
Q ss_pred ---cCCCCCCceeEE-----EecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 132 ---GRLFPKSTLHVV-----NSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 132 ---~~l~p~~s~d~~-----~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
-.-++.+++|.| +|++-+-+. +.--.....+|..+..-
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~----------------------------------~r~~~~~~~~L~~a~~~ 130 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGE----------------------------------NRELENLKEFLKKAEDL 130 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTS----------------------------------HTHHHHHHHHHHHGGGG
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhh----------------------------------hccchhHHHHHHHHHHh
Confidence 111334555544 444332211 11123456789999999
Q ss_pred hccCceeEEEecc
Q 018250 204 LVPGGLMVFSLIT 216 (359)
Q Consensus 204 L~pGG~lvl~~~g 216 (359)
|+|||+|++..+-
T Consensus 131 Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 131 LNPGGRIVVISFH 143 (192)
T ss_dssp EEEEEEEEEEESS
T ss_pred cCCCCeeeeeccc
Confidence 9999999987753
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.67 E-value=0.021 Score=51.98 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=65.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC-----CCCc-ccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL-----PPRK-YYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l-----~~~~-~~~~~vpgsf 130 (359)
...+|||++|+||..|+.++. . ..+|++.|....--...-++. .... -|+.+---.|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~--------~---------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~ 194 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAA--------A---------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF 194 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred CCCeEEEecCCCcHHHHHHHh--------C---------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh
Confidence 457999999999999997741 1 247888888764444443332 1112 2444322223
Q ss_pred ccCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 131 HGRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 131 y~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
..+. ...+.+|+|+. +.|.....+. +.++ ..+.|+...++.-.+-|+|||.
T Consensus 195 l~~~~~~~~~fD~Iil--------DPP~f~~~~~------~~~~--------------~~~~~~~~l~~~~~~ll~~~g~ 246 (309)
T d2igta1 195 IQREERRGSTYDIILT--------DPPKFGRGTH------GEVW--------------QLFDHLPLMLDICREILSPKAL 246 (309)
T ss_dssp HHHHHHHTCCBSEEEE--------CCCSEEECTT------CCEE--------------EHHHHHHHHHHHHHHTBCTTCC
T ss_pred HHHHhhcCCCCCEEEE--------CCCccccccc------chhH--------------HHHHHHHHHHHHHHHhcCCCCC
Confidence 2332 24568899988 2332212111 1111 1234555677777788899998
Q ss_pred eEEEeccC
Q 018250 210 MVFSLITG 217 (359)
Q Consensus 210 lvl~~~g~ 217 (359)
+++.+...
T Consensus 247 ~ll~t~~s 254 (309)
T d2igta1 247 GLVLTAYS 254 (309)
T ss_dssp EEEEEECC
T ss_pred EEEEecCC
Confidence 77776543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=95.60 E-value=0.0072 Score=54.96 Aligned_cols=125 Identities=14% Similarity=0.024 Sum_probs=66.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C-CcccccccCccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P-RKYYAAGVPGSFHG 132 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~-~~~~~~~vpgsfy~ 132 (359)
....+|+|.|||+|...+.++..+ .++ ..++.+++..|+-..........+. . ...+.. +++.
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l----~~~------~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~---~d~~- 181 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQL----ELK------GDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH---QDGL- 181 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHH----HTT------SSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE---SCTT-
T ss_pred CCCCEEEeCCCCcchhHHHHHHHH----Hhc------cCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc---cccc-
Confidence 457899999999998877665332 111 2356789999976543332111111 0 111111 1221
Q ss_pred CCCCCCceeEEEecCcc--cccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 133 RLFPKSTLHVVNSFNAM--HWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~al--HWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
...+...+|+|+++=-+ +|... ...........|. + .-...|+..-.+-|+|||++
T Consensus 182 ~~~~~~~fD~vi~NPPy~~~~~~~----~~~~~~~~~~~~~-----~-------------~~~~~Fi~~~~~~Lk~~G~~ 239 (328)
T d2f8la1 182 ANLLVDPVDVVISDLPVGYYPDDE----NAKTFELCREEGH-----S-------------FAHFLFIEQGMRYTKPGGYL 239 (328)
T ss_dssp SCCCCCCEEEEEEECCCSEESCHH----HHTTSTTCCSSSC-----E-------------EHHHHHHHHHHHTEEEEEEE
T ss_pred cccccccccccccCCCCCCCccch----hhhhcchhcccCc-----c-------------hHHHHHHHHHHHhcCCCCce
Confidence 23567899999997332 22110 0000000000000 0 01234888888999999999
Q ss_pred EEEecc
Q 018250 211 VFSLIT 216 (359)
Q Consensus 211 vl~~~g 216 (359)
++.++.
T Consensus 240 ~~I~p~ 245 (328)
T d2f8la1 240 FFLVPD 245 (328)
T ss_dssp EEEEEG
T ss_pred EEEecC
Confidence 999874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.46 E-value=0.0091 Score=50.92 Aligned_cols=66 Identities=12% Similarity=-0.056 Sum_probs=38.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
.-+|+|+|||+|..++.+. .. ..-+|+..|.-..--...-++++.- -|+. +++.+ .+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~--------~~--------ga~~V~~vDid~~a~~~ar~N~~~~-~~~~---~D~~~---l~ 105 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSY--------LL--------GAESVTAFDIDPDAIETAKRNCGGV-NFMV---ADVSE---IS 105 (197)
T ss_dssp TSEEEEETCTTCHHHHHHH--------HT--------TBSEEEEEESCHHHHHHHHHHCTTS-EEEE---CCGGG---CC
T ss_pred CCEEEEeCCCCcHHHHHHH--------Hc--------CCCcccccccCHHHHHHHHHccccc-cEEE---Eehhh---cC
Confidence 4699999999998887653 21 1136888886443322233333321 1222 23322 24
Q ss_pred CceeEEEec
Q 018250 138 STLHVVNSF 146 (359)
Q Consensus 138 ~s~d~~~S~ 146 (359)
+.+|+|+|+
T Consensus 106 ~~fD~Vi~N 114 (197)
T d1ne2a_ 106 GKYDTWIMN 114 (197)
T ss_dssp CCEEEEEEC
T ss_pred CcceEEEeC
Confidence 789999984
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.04 Score=45.82 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=29.3
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL 116 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l 116 (359)
.+|+|++||||..++..++ +. --.|++.|.-..-...+-+++
T Consensus 45 ~~vLDlfaGsG~~gieals--------rG--------a~~v~~VE~~~~a~~~~k~N~ 86 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALS--------RY--------AAGATLIEMDRAVSQQLIKNL 86 (183)
T ss_dssp CEEEETTCTTCHHHHHHHH--------TT--------CSEEEEECSCHHHHHHHHHHH
T ss_pred hhhhhhhccccceeeeEEe--------cC--------cceeEEEEEeechhhHHHHHH
Confidence 5899999999999998752 21 126788887765555554443
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=95.12 E-value=0.011 Score=52.87 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=44.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|.-++.++ + . |..+|++.|....-....-++... ..+++. .+++++.
T Consensus 111 ~~~vld~g~GsG~i~~~la--------~-~-------~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~--~~~~~~~ 172 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVA--------K-F-------SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR--KGEFLEP 172 (271)
T ss_dssp CCEEEEESCTTSHHHHHHH--------H-H-------SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE--ESSTTGG
T ss_pred ccEEEEeeeeeehhhhhhh--------h-c-------ccceeeechhhhhHHHHHHHHHHHcCCCceeEEe--ecccccc
Confidence 5689999999999777663 2 1 467999999987555544443221 223222 2455543
Q ss_pred CC-CCCceeEEEec
Q 018250 134 LF-PKSTLHVVNSF 146 (359)
Q Consensus 134 l~-p~~s~d~~~S~ 146 (359)
+. ..+.+|+++||
T Consensus 173 ~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 173 FKEKFASIEMILSN 186 (271)
T ss_dssp GGGGTTTCCEEEEC
T ss_pred cccccCcccEEEEc
Confidence 32 23689999994
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.99 E-value=0.007 Score=51.56 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||||..++.++ .+ ....|+..|.-......+-+++.. ..-+..+ +...
T Consensus 47 g~~vLDlg~GtG~l~i~a~--------~~--------g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~---d~~~-- 105 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGAL--------LL--------GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG---DVSE-- 105 (201)
T ss_dssp TCEEEEETCTTCHHHHHHH--------HT--------TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEES---CGGG--
T ss_pred CCEEEECcCcchHHHHHHH--------Hc--------CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEEC---chhh--
Confidence 4689999999999888663 11 124789999877655555554432 1112222 2211
Q ss_pred CCCCceeEEEecCc
Q 018250 135 FPKSTLHVVNSFNA 148 (359)
Q Consensus 135 ~p~~s~d~~~S~~a 148 (359)
+++.+|+|+++=-
T Consensus 106 -~~~~fD~Vi~nPP 118 (201)
T d1wy7a1 106 -FNSRVDIVIMNPP 118 (201)
T ss_dssp -CCCCCSEEEECCC
T ss_pred -hCCcCcEEEEcCc
Confidence 3567999998533
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=94.87 E-value=0.055 Score=49.13 Aligned_cols=113 Identities=10% Similarity=0.003 Sum_probs=63.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-----C-CcccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-----P-RKYYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-----~-~~~~~~~vpgsfy 131 (359)
..+|+|+.|++|..|+..+ .. -.-+|+..|+...--...-.+.. . +-.|+.+-.-++.
T Consensus 145 g~~VLdlf~~~G~~sl~aa--------~~--------ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l 208 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAA--------MG--------GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF 208 (317)
T ss_dssp TCEEEEETCTTTHHHHHHH--------HT--------TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH
T ss_pred CCceeecCCCCcHHHHHHH--------hC--------CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHH
Confidence 4689999999999998663 11 12368888887644443333321 1 1123333221222
Q ss_pred cCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+++- -...+|+|+.- |+.... ++. .. ....+|+...++.-.+-|+|||.|
T Consensus 209 ~~~~~~~~~fD~Ii~D---------PP~f~~------~~~------~~--------~~~~~~~~~L~~~a~~ll~pgG~l 259 (317)
T d2b78a2 209 KYARRHHLTYDIIIID---------PPSFAR------NKK------EV--------FSVSKDYHKLIRQGLEILSENGLI 259 (317)
T ss_dssp HHHHHTTCCEEEEEEC---------CCCC-----------------CC--------CCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHhhcCCCCEEEEc---------Chhhcc------chh------HH--------HHHHHHHHHHHHHHHHHcCCCCEE
Confidence 2222 23578888872 332211 110 01 124456777888888899999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
++++-
T Consensus 260 ~~~sc 264 (317)
T d2b78a2 260 IASTN 264 (317)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98774
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.59 E-value=0.1 Score=43.50 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=62.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
....+|+|.|||+|.....+. ++.. ....++..|+-.... .+.... .-+.++|.. ..
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~--------~~~~------~~~~i~g~ei~~~~~-----~~~~~~---~~~~~~~~~-~~ 74 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFR--------EAHG------TAYRFVGVEIDPKAL-----DLPPWA---EGILADFLL-WE 74 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHH--------HHHC------SCSEEEEEESCTTTC-----CCCTTE---EEEESCGGG-CC
T ss_pred CCcCEEEECCCchHHHHHHHH--------Hhcc------ccceEEeeecCHHHH-----hhcccc---eeeeeehhc-cc
Confidence 345799999999998655442 3322 134677777754321 111111 111234433 23
Q ss_pred CCCceeEEEecCcc---cccCCCCcccccccccccCCCceeecCCCHHHHHHHHHH-----HHHH-HHHHHHHHHHhhcc
Q 018250 136 PKSTLHVVNSFNAM---HWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQ-----FRSD-FESILNARAEELVP 206 (359)
Q Consensus 136 p~~s~d~~~S~~al---HWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q-----~~~D-~~~fL~~Ra~EL~p 206 (359)
+...+|+++++--. ++.+..+.... ......+... ...| ...|+..-.+-|+|
T Consensus 75 ~~~~fd~ii~npP~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~ 136 (223)
T d2ih2a1 75 PGEAFDLILGNPPYGIVGEASKYPIHVF------------------KAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP 136 (223)
T ss_dssp CSSCEEEEEECCCCCCBSCTTTCSBCCC------------------HHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE
T ss_pred cccccceecccCccccccccccccchhh------------------hhhhhhhhhccccCCCcchHHHHHHHHHHHhccc
Confidence 56789999997543 22222221111 1111111110 0112 34578778888999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||++++.++
T Consensus 137 ~G~~~~I~p 145 (223)
T d2ih2a1 137 GGVLVFVVP 145 (223)
T ss_dssp EEEEEEEEE
T ss_pred CCceEEEEe
Confidence 999999986
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.71 E-value=0.016 Score=49.76 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=26.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
++-+|+|+||++|..|+.++ +.. .+.-+++.-|...
T Consensus 56 kpk~ILEiGt~~G~Sti~la--------~al------~~~g~v~sid~~~ 91 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMA--------RLL------QPGARLLTMEMNP 91 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHH--------TTC------CTTCEEEEEESCH
T ss_pred CCCEEEEEccCchhHHHHHH--------HhC------CCccEEEEEeccH
Confidence 45799999999999999884 221 1235888888765
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=92.88 E-value=0.075 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=19.6
Q ss_pred CcceEEEeecCCCCcccHHHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ 78 (359)
...-+|+|+|||+|..|..+++.
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~ 42 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQR 42 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCeEEEECCCchHHHHHHHhC
Confidence 35688999999999999999754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=92.56 E-value=0.22 Score=41.06 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=44.0
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C--cc-cccccCccccc
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R--KY-YAAGVPGSFHG 132 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~--~~-~~~~vpgsfy~ 132 (359)
.+|+|+-||||..++..++ +- --+|++.|.-..-++.+-+++.. . .+ .....--.|..
T Consensus 45 ~~vLDlFaGsG~~glEalS--------RG--------A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~ 108 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALS--------RQ--------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK 108 (183)
T ss_dssp CEEEETTCTTCHHHHHHHH--------TT--------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred ceEeecccCccceeeeeee--------ec--------ceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc
Confidence 5899999999999998852 21 13788888877766666655421 1 11 11111113444
Q ss_pred CCCCCCceeEEEe
Q 018250 133 RLFPKSTLHVVNS 145 (359)
Q Consensus 133 ~l~p~~s~d~~~S 145 (359)
+......+|+||.
T Consensus 109 ~~~~~~~fDlIFl 121 (183)
T d2ifta1 109 QPQNQPHFDVVFL 121 (183)
T ss_dssp SCCSSCCEEEEEE
T ss_pred ccccCCcccEEEe
Confidence 4445567898887
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=91.65 E-value=0.92 Score=37.13 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.1
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~ 76 (359)
.+..+|+|||||.|.-+.-+.
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~ 41 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVV 41 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHH
T ss_pred CCCCeEEEEeccCCcceEEEE
Confidence 345789999999999987664
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.066 Score=45.98 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=26.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
++-+|+++||++|..|+.++. .. ++.-+++.-|...
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~--------al------~~~g~i~tie~~~ 94 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALAL--------AL------PADGRVVTCEVDA 94 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHT--------TS------CTTCEEEEEESCS
T ss_pred CCCeEEEEechhhHHHHHHHH--------hC------CCCceEEEEeech
Confidence 468999999999999998852 21 1235788888765
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=90.57 E-value=0.13 Score=44.94 Aligned_cols=79 Identities=15% Similarity=-0.016 Sum_probs=48.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
...-+|+|+|||+|..|..++ ++. .+|+.-|+-......|-+..+... =+.-+-+++..--+
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~--------~~~---------~~v~aIE~D~~l~~~l~~~~~~~~-n~~ii~~D~l~~~~ 89 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLA--------KIS---------KQVTSIELDSHLFNLSSEKLKLNT-RVTLIHQDILQFQF 89 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHH--------HHS---------SEEEESSSSCSSSSSSSCTTTTCS-EEEECCSCCTTTTC
T ss_pred CCCCeEEEECCCccHHHHHHH--------hhc---------CceeEeeecccchhhhhhhhhhcc-chhhhhhhhhcccc
Confidence 346889999999999999885 331 267777776544333222221100 02222356665557
Q ss_pred CCCceeEEEecCccccc
Q 018250 136 PKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 136 p~~s~d~~~S~~alHWL 152 (359)
|+...+.++|+.-.|+-
T Consensus 90 ~~~~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 90 PNKQRYKIVGNIPYHLS 106 (245)
T ss_dssp CCSSEEEEEEECCSSSC
T ss_pred ccceeeeEeeeeehhhh
Confidence 77777888888776663
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=89.86 E-value=0.14 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.0
Q ss_pred HHHHHHHHhhccCceeEEEecc
Q 018250 195 SILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
.|++..++-|+|||.+++...+
T Consensus 176 eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 176 EFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCceEEEecCC
Confidence 3777788999999999987643
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.96 E-value=0.35 Score=42.57 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=17.6
Q ss_pred HHHHHHHHhhccCceeEEEec
Q 018250 195 SILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.|++..++-|+|||.+++...
T Consensus 171 eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 171 EFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHhhHhhcCCCceEEEecC
Confidence 477788899999999988764
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=88.35 E-value=1.7 Score=40.06 Aligned_cols=131 Identities=11% Similarity=-0.001 Sum_probs=64.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCC--CCCCCceEEecCCCCCchHH-----HHHhCCCCcccccccCcc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLS--LPVPDFQVFFNDHTENDFNT-----LFRTLPPRKYYAAGVPGS 129 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~--~~~p~~~v~~nDLp~NDFn~-----lf~~l~~~~~~~~~vpgs 129 (359)
...+|+|-.||+|..-+..++.+.+ ...... ....+..++..|.-...... +...+.. ...-.. -++
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~----~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~-~~~~i~-~~d 235 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKG----QSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT-DRSPIV-CED 235 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHT----CC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS-SCCSEE-ECC
T ss_pred ccceeeccccccCccHHHHHHHHHh----hccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc-ccceee-cCc
Confidence 3578999999999998887655431 100000 00001235555543211111 0000110 000000 112
Q ss_pred cccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 130 FHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 130 fy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
+.. -.+...+|+|+++=-+ .........+|+...+...... -..|+....+-|++||+
T Consensus 236 ~l~-~~~~~~fD~Ii~NPPf--------g~~~~~~~~~~~~~~~~~~~~~-------------~~~Fi~~~~~~Lk~~G~ 293 (425)
T d2okca1 236 SLE-KEPSTLVDVILANPPF--------GTRPAGSVDINRPDFYVETKNN-------------QLNFLQHMMLMLKTGGR 293 (425)
T ss_dssp TTT-SCCSSCEEEEEECCCS--------SCCCTTCCCCCCTTSSSCCSCH-------------HHHHHHHHHHHEEEEEE
T ss_pred hhh-hhcccccceEEecCCC--------CCCccccchhhhhhcccccccH-------------HHHHHHHHHHhcCCCCe
Confidence 221 2466789999995322 2222222233433333322221 12488888999999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
+++.++
T Consensus 294 ~~iI~p 299 (425)
T d2okca1 294 AAVVLP 299 (425)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999997
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.31 E-value=0.34 Score=40.92 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=35.1
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++|||+|++ +|+||-|+-+..... -.+.| ...+..+++...+.|+|||.+++..
T Consensus 19 lpd~sVdliit------------------dPPY~~~~~~~d~~~--~~~~y----~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 19 VENKSVQLAVI------------------DPPYNLSKADWDSFD--SHNEF----LAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SCTTCEEEEEE------------------CCCCSSCSSGGGCCS--SHHHH----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCCCcCEEEE------------------CCCCCCCcCcCcCCC--CHHHH----HHHHHHHHHHhhhccccCccccccc
Confidence 57999999998 344555443332211 12223 3345567777888999999887654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.63 E-value=0.76 Score=39.10 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhccCceeEEEeccC
Q 018250 192 DFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 192 D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
.+..++..-.+.|+|||.+++.....
T Consensus 49 ~~~~~~~e~~rvLk~~G~~~~~~~~~ 74 (279)
T d1eg2a_ 49 WAKRWLAEAERVLSPTGSIAIFGGLQ 74 (279)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred HHHHHHHHHHHHhCCCccEEEecCcc
Confidence 34556666778899999999876543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=87.61 E-value=0.063 Score=46.39 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=27.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEN 107 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~N 107 (359)
++-+|+++|+++|..|+.++ +..+ +.-+++-.|.-.+
T Consensus 59 ~~k~iLEiGT~~GyStl~la--------~al~------~~g~v~tie~~~~ 95 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATA--------LAIP------EDGKILAMDINKE 95 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHH--------HHSC------TTCEEEEEESCCH
T ss_pred CCCcEEEecchhhhhHHHHH--------hhCC------CCcEEEEEeccch
Confidence 46899999999999999885 2222 2357777776653
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.34 E-value=0.47 Score=41.88 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=74.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+-+|.|.=|..+++ .. .+-.++.+|...+-...|-..+.. ..+.+... +.....
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~--------l~-------~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~-~~~~~~ 165 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILE--------VA-------PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD-GRYPSQ 165 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHH--------HC-------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECC-TTCTHH
T ss_pred ccceeEeccCccccchhhhhh--------hh-------hhhhhhhhhcchhhhhhHhhhhhcccccceeeecc-ccccch
Confidence 357899999999999998853 11 124899999999888777666532 22222211 122223
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
..++..+|.|.- ++|+.-..... .|.+ |....++... +...+--..+|+.-++-|+|||+||-+
T Consensus 166 ~~~~~~fd~IL~--------DaPCSg~G~~r--r~p~-~~~~~~~~~~-----~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 166 WCGEQQFDRILL--------DAPCSATGVIR--RHPD-IKWLRRDRDI-----PELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp HHTTCCEEEEEE--------ECCCCCGGGTT--TCTT-HHHHCCTTHH-----HHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hcccccccEEEE--------eccccccCccc--cccc-hhhccccchh-----hHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 335567888875 55654332110 0000 1111112222 122333456788878889999999988
Q ss_pred eccC
Q 018250 214 LITG 217 (359)
Q Consensus 214 ~~g~ 217 (359)
+-.-
T Consensus 230 TCS~ 233 (284)
T d1sqga2 230 TCSV 233 (284)
T ss_dssp ESCC
T ss_pred eecC
Confidence 8643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=0.38 Score=41.90 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred cceEEEeecCCCCcccHHHHHH------------HHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQN------------IIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFR 114 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~------------ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~ 114 (359)
..-.|+++|||+|..|..+++. +++.+++++. ..+.+.++..|.-.-|+..+..
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~----~~~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGGCCHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhh----hccchhHHhhhhhhhccccccc
Confidence 3567899999999999999765 5555555432 2356888888888777776654
|