Citrus Sinensis ID: 018254

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MALTINTNPQKPNGEIEETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKKNGVIKVNN
Secondary Structure (PSIPRED)
ccccccccccccccHHHccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEEEccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccHHHHHcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccccccccccEEEEEHccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
maltintnpqkpngeieetisfpqfdvvsdvsdhhyitssftkkngrdhfpagshkKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVgtagtpyhdglfffdlafpadypnhppmvhyrsfglrlnpnlyanGRVCLSLLNtwtgkksekwnpdeSTVLQVLVSIQALVlnekpyfnepghgmwpgrsiwekkstayneDVFILSCKSmtfllrnppknfegfVRSHFRERGHVILSACKSYLSGHVRVGyylnegssgggasspgpggavdvSEKFQGLIVQLYPELVTAFSrtgaslgslteqvkferktvpfkgegvlkqkkekntsgiARKVFGKIKVALGlkkngvikvnn
Flexible Loop (DISEMBL)
maltintnpqkpngeiEETISFPQFDVVSDVSDHHYItssftkkngrdhFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGaslgslteqvkferktvpfkgegvlkqkkekntsgiarkvfgkikvalglkkngvikvnn
Low Complexity Region (SEG)
MALTINTNPQKPNGEIEETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEgssgggasspgpggaVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKKNGVIKVNN
Disordered region (IsUnstruct)
*******************ISFPQFDVVSDVSDHHYITSSFT*******F**GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLN******************VSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPF***************GIARKVFGKIKVALGLKKNGVI****
Disordered Region (DISOPRED)
*********************FPQFDVVSDVSDHHYI******************KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHV*****************************FQGLIVQLYPELVTAFSRTGASL************************************VFGKIKVALGLKKNGV*****
Disordered Region (DISEMBL)
MALTINTNPQKPNGEIEETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEG*************AVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKKNGVIKVNN
Disordered Region (DISPRO)
*ALTINTNPQKPNGEIEETISFPQFDVVSDVSDHHYITSS*******DHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNE*****************VSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKKNGVIKVNN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALTINTNPQKPNGEIEETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKKNGVIKVNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q9ZVX1	1102	Probable ubiquitin-conjug	yes	no	0.763	0.248	0.491	1e-77
Q8VY10	907	Probable ubiquitin-conjug	no	no	0.740	0.293	0.510	6e-75
Q9LUQ5	609	Probable ubiquitin-conjug	no	no	0.718	0.423	0.509	8e-74
Q8GY87	543	Probable ubiquitin-conjug	no	no	0.621	0.410	0.559	7e-72
Q9C0C9	1292	Ubiquitin-conjugating enz	yes	no	0.676	0.188	0.387	6e-41
Q9NR09	4857	Baculoviral IAP repeat-co	no	no	0.637	0.047	0.366	2e-40
O88738	4882	Baculoviral IAP repeat-co	yes	no	0.637	0.046	0.362	4e-40
Q6ZPJ3	1288	Ubiquitin-conjugating enz	no	no	0.593	0.165	0.404	4e-40
Q5UQ88	1441	Probable ubiquitin-conjug	N/A	no	0.568	0.141	0.387	5e-32
Q11076	728	Probable ubiquitin-conjug	yes	no	0.529	0.260	0.361	1e-30

>sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=3 SV=1

 Score =  290 bits (741), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 140/285 (49%), Positives = 189/285 (66%), Gaps = 11/285 (3%)

Query: 18   ETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRV 77
            ++ SF +FD+  D  DHH++     K   R  F     KK+ Q+WKIL+ +LP+ IFVR 
Sbjct: 820  DSCSFRRFDISQDPLDHHFLGVDGQKTKERQWF-----KKVDQDWKILQNNLPDGIFVRA 874

Query: 78   YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGR 137
            YE+R+DLLRAVIVG  GTPY DGLFFFD   P+DYP+ PP  +Y S G RLNPNLY  G+
Sbjct: 875  YEDRMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGGWRLNPNLYEEGK 934

Query: 138  VCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKS 197
            VCLSLLNTWTG+ +E W+P  S++LQVLVS+Q LVLN KPYFNE G+    G +  EK S
Sbjct: 935  VCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNS 994

Query: 198  TAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLN 257
              YNE+ F+L+CK+M +L+R PPK+FE  ++ HFR+RG+ IL AC +Y+ G++ +G    
Sbjct: 995  LGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYILKACDAYMKGYL-IGSLTK 1053

Query: 258  EGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASL 302
            + S     SS     A   S  F+ ++ ++ P+L +A S  GA  
Sbjct: 1054 DASVIDERSS-----ANSTSVGFKLMLAKIAPKLFSALSEVGADC 1093

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1

 Score =  281 bits (718), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 143/280 (51%), Positives = 189/280 (67%), Gaps = 14/280 (5%)

Query: 20  ISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYE 79
           + F QFD+V+D SDHH+++S   K   +        KK+ QEW  LE +LP +I+VRV E
Sbjct: 631 VRFRQFDMVNDCSDHHFLSSD--KGLAQSQVTKSWVKKVQQEWSNLEANLPNTIYVRVCE 688

Query: 80  NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVC 139
            R+DLLRA +VG  GTPYHDGLFFFD+  P  YP+ PPMVHY S G+RLNPNLY +GRVC
Sbjct: 689 ERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVC 748

Query: 140 LSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTA 199
           LSLLNTW+G  +E WN   S++LQ+L+S QALVLNEKPYFNE G+    GR+  EK S +
Sbjct: 749 LSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNEAGYDKQLGRAEGEKNSVS 808

Query: 200 YNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEG 259
           YNE+ F+++CKSM  +LR PPK+FE  V+ HF  R   +L+ACK+Y+ G V V       
Sbjct: 809 YNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKAYMEG-VPV------- 860

Query: 260 SSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTG 299
               G+S+   G +   S  F+ ++ +LYP+L+ AFS  G
Sbjct: 861 ----GSSANLQGNSTTNSTGFKIMLSKLYPKLLEAFSEIG 896

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1

 Score =  277 bits (709), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 141/277 (50%), Positives = 174/277 (62%), Gaps = 19/277 (6%)

Query: 22  FPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENR 81
           F +FD+V D SDHHY +   T K     +     K+I  EW+ILEK LPE IFVR YE+R
Sbjct: 305 FKRFDIVEDFSDHHYASKGTTSKQHSKDW----AKRIQDEWRILEKDLPEMIFVRAYESR 360

Query: 82  IDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLS 141
           +DLLRAVI+G  GTPYHDGLFFFD+ FP  YP+ PP+VHY S GLR+NPNLY  G+VCLS
Sbjct: 361 MDLLRAVIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYNCGKVCLS 420

Query: 142 LLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYN 201
           LL TW+G + EKW P+ ST+LQVLVSIQ L+LN+KPYFNEPG+    G +  E  S AY+
Sbjct: 421 LLGTWSGNQREKWIPNTSTMLQVLVSIQGLILNQKPYFNEPGYERSAGSAHGESTSKAYS 480

Query: 202 EDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSS 261
           E+ FILS K+M + +R PPK FE F   HF    H +L AC +Y +G    GY +     
Sbjct: 481 ENTFILSLKTMVYTMRRPPKYFEDFAYGHFFSCAHDVLKACNAYRNG-ATPGYLVK---- 535

Query: 262 GGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRT 298
                     GA DV E   G+    +   V  F  T
Sbjct: 536 ----------GAPDVEENSAGMSSLKFRTDVATFVET 562

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2

 Score =  271 bits (692), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 163/227 (71%), Gaps = 4/227 (1%)

Query: 22  FPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENR 81
           F +FD V D SDHHY +   + K    ++     KK+  +WKILE  LPE+I VR  E+R
Sbjct: 244 FKRFDTVEDFSDHHYASKGKSSKQHSKNW----VKKVQADWKILENDLPEAISVRACESR 299

Query: 82  IDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLS 141
           +DLLRAVI+G  GTPYHDGLFFFD+ FP  YP+ PP VHY S GLR+NPNLY  G+VCLS
Sbjct: 300 MDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYNCGKVCLS 359

Query: 142 LLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYN 201
           LL TW G   EKW P+EST+LQ+LVSIQAL+LNEKPYFNEPG+    G +  E KS  Y+
Sbjct: 360 LLGTWAGSAREKWLPNESTMLQLLVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYS 419

Query: 202 EDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSG 248
           E+VF+LS K+M + +R PP++FE +V++H+  R H I+ AC +Y +G
Sbjct: 420 ENVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAYKAG 466

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3

 Score =  168 bits (426), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 98/253 (38%), Positives = 137/253 (54%), Gaps = 10/253 (3%)

Query: 32   SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVG 91
            S+H +    F     +  F       + +E  +L   LPE I V+ +E+R+DL  A+I G
Sbjct: 937  SNHSFKKIEFQPPEAKKFF-----STVRKEMALLATSLPEGIMVKTFEDRMDLFSALIKG 991

Query: 92   TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS-FGLRLNPNLYANGRVCLSLLNTWTGKK 150
               TPY DGL+ FD+  P  YP  PP   Y S    RLNPNLY NG+VC+SLL TW GK 
Sbjct: 992  PTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKG 1051

Query: 151  SEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK 210
            +E+W   +S++LQVL+SIQ L+L  +PY+NE G     G     + S  YNE   I   +
Sbjct: 1052 TERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQ 1110

Query: 211  SMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRV--GYYLNEGSSGGGASSP 268
            SMT L+R PP+ FE  +R HF   G  +++  +S+L  H  +     L  G     +SSP
Sbjct: 1111 SMTQLVRRPPEVFEQEIRQHFSTGGWRLVNRIESWLETHALLEKAQALPNGVP-KASSSP 1169

Query: 269  GPGGAVDVSEKFQ 281
             P    ++S+  Q
Sbjct: 1170 EPPAVAELSDSGQ 1182

Catalyzes the covalent attachment of ubiquitin to other proteins.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/248 (36%), Positives = 142/248 (57%), Gaps = 19/248 (7%)

Query: 16   IEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQEW----K 63
            + + + F  F++VS+  D        +HY++     KN  D   A   +++ QE      
Sbjct: 4531 VMKKLQFDTFEMVSEDEDGKLGFKVNYHYMSQV---KNANDANSAARARRLAQEAVTLST 4587

Query: 64   ILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
             L      S+FVR  E R+D+++ +I G A TPY +G F FD+ FP DYP+ PP+V+  +
Sbjct: 4588 SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 4647

Query: 124  FG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFN 180
             G   +R NPNLY +G+VCLS+LNTW G+  EKWNP  S+ LQVLVS+Q+L+L  +PYFN
Sbjct: 4648 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFN 4707

Query: 181  EPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEGFVRSHFRERGHVIL 239
            EPG+    G     + S  Y+ ++   + K +M   +RNP   F+  +  HF  +   I+
Sbjct: 4708 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIM 4767

Query: 240  SACKSYLS 247
            + C+ +++
Sbjct: 4768 AQCEEWIA 4775

Anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase. Has an unusual ubiquitin conjugation system in that it could combine in a single polypeptide, ubiquitin conjugating (E2) with ubiquitin ligase (E3) activity, forming a chimeric E2/E3 ubiquitin ligase. Its tragets include CASP9 and DIABLO/SMAC. Acts as an inhibitor of CASP3, CASP7 and CASP9. Important regulator for the final stages of cytokinesis. Crucial for normal vesicle targeting to the site of abscission, but also for the integrity of the midbody and the midbody ring, and its striking ubiquitin modification.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O88738|BIRC6_MOUSE Baculoviral IAP repeat-containing protein 6 OS=Mus musculus GN=Birc6 PE=1 SV=2

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 142/248 (57%), Gaps = 19/248 (7%)

Query: 16   IEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQEW----K 63
            + + + F  F++VS+  D        +HY++     KN  D   A   +++ QE      
Sbjct: 4556 VMKKLQFDTFEMVSEDDDGKLGFKVNYHYMSQV---KNANDANSAARARRLAQEAVTLST 4612

Query: 64   ILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
             L      S+FVR  E R+D+++ +I G A TPY +G F FD+ FP DYP+ PP+V+  +
Sbjct: 4613 SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 4672

Query: 124  FG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFN 180
             G   +R NPNLY +G+VCLS+LNTW G+  EKWNP  S+ LQVLVS+Q+L+L  +PYFN
Sbjct: 4673 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFN 4732

Query: 181  EPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEGFVRSHFRERGHVIL 239
            EPG+    G     + S  Y+ ++   + K +M   +RNP   F+  +  HF  +   ++
Sbjct: 4733 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRIELM 4792

Query: 240  SACKSYLS 247
            + C+ +++
Sbjct: 4793 AQCEEWIA 4800

Anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase. Has an unusual ubiquitin conjugation system in that it could combine in a single polypeptide, ubiquitin conjugating (E2) with ubiquitin ligase (E3) activity, forming a chimeric E2/E3 ubiquitin ligase. Its tragets include CASP9 and DIABLO/SMAC. Acts as an inhibitor of CASP3, CASP7 and CASP9. Important regulator for the final stages of cytokinesis. Crucial for normal vesicle targeting to the site of abscission, but also for the integrity of the midbody and the midbody ring, and its striking ubiquitin modification. Required for normal placenta development.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6ZPJ3|UBE2O_MOUSE Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1 SV=3

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/220 (40%), Positives = 124/220 (56%), Gaps = 7/220 (3%)

Query: 32   SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVG 91
            S+H +    F     +  F       + +E  +L   LP+ I V+ +E+R+DL  A+I G
Sbjct: 934  SNHSFKKIEFQPPEAKKFF-----STVRKEMALLATSLPDGIMVKTFEDRMDLFSALIKG 988

Query: 92   TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS-FGLRLNPNLYANGRVCLSLLNTWTGKK 150
               TPY DGL+ FD+  P  YP  PP   Y S    RLNPNLY NG+VC+SLL TW GK 
Sbjct: 989  PTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKG 1048

Query: 151  SEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK 210
            +E+W   +S++LQVL+SIQ L+L  +PY+NE G     G     + S  YNE   I   +
Sbjct: 1049 TERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQ 1107

Query: 211  SMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHV 250
            SMT L+R PP+ FE  +R HF   G  +++  +S+L  H 
Sbjct: 1108 SMTQLVRRPPEVFEQEIRQHFSVGGWRLVNRIESWLETHA 1147

Catalyzes the covalent attachment of ubiquitin to other proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q5UQ88|UBC3_MIMIV Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 116/214 (54%), Gaps = 10/214 (4%)

Query: 42   TKKNGRDHFPAGSHKKIMQEWKILEKHLP----ESIFVRVYENRIDLLRAVIVGTAGTPY 97
            TKK G  H  A   K I +E     K+LP     SI+ R     I     +I G   +PY
Sbjct: 1204 TKKEGLIHKDA--LKAISRELLSHSKNLPVEYGSSIYYRYSPENIRYHEFIITGPEDSPY 1261

Query: 98   HDGLFFFDLAFPADYPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKW 154
              G F F +  P+ YPN  P V   + G   +R NPNLYA+G+VCLS+L TW G+  E W
Sbjct: 1262 DSGCFHFRMYNPSAYPNTSPFVSMTTTGHGSVRFNPNLYADGKVCLSILGTWRGQAGESW 1321

Query: 155  NPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMT 213
             P  S++LQV++SIQ+LVL  +PYFNEPG+    G     K ST YN+ V     K +M 
Sbjct: 1322 IPGVSSMLQVMISIQSLVLISEPYFNEPGYESSRGTDKGNKLSTEYNQKVRFNCMKWAMI 1381

Query: 214  FLLRNPPKNFEGFVRSHFRERGHVILSACKSYLS 247
             +++NP   FE  ++ HF  +   I   C+++++
Sbjct: 1382 DVIKNPVPGFESMIKKHFSIKAPHIKQVCQTWIN 1415

Catalyzes the covalent attachment of ubiquitin to other proteins.

Acanthamoeba polyphaga (taxid: 5757)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q11076|UBC17_CAEEL Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=3 SV=3

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 9/199 (4%)

Query: 56  KKIMQEWKILEKHLP----ESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           K+I +E   +   LP     SI+V   E R+D+++ +I G   TPY +GLF FD+ FP  
Sbjct: 405 KRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTG 464

Query: 112 YPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
           YP  PP   + + G   +R NPNLY +G++CLS+L TW G+  EKWNP   +++QVLVSI
Sbjct: 465 YPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNP-YCSLMQVLVSI 523

Query: 169 QALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEGFV 227
           Q L+  + PYFNEPG   + G    ++ S  YN  +   +   ++   L+ P ++F+  +
Sbjct: 524 QGLIFVKDPYFNEPGFERYQGTDRGDEYSRKYNLQIEHATLNYAIREQLKKPSEHFKEVI 583

Query: 228 RSHFRERGHVILSACKSYL 246
             H   +   IL   ++++
Sbjct: 584 EKHLWLKREAILKQAQAWI 602

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
224101547	383	predicted protein [Populus trichocarpa]	0.919	0.861	0.653	1e-128
255556414	362	conserved hypothetical protein [Ricinus	0.899	0.892	0.640	1e-123
225431980	362	PREDICTED: probable ubiquitin-conjugatin	0.938	0.930	0.611	1e-116
356519922	324	PREDICTED: probable ubiquitin-conjugatin	0.874	0.969	0.525	2e-91
87240608	330	Ubiquitin-conjugating enzyme, E2 [Medica	0.896	0.975	0.525	1e-89
124359875	330	Ubiquitin-conjugating enzyme, E2 [Medica	0.899	0.978	0.524	2e-89
356564644	337	PREDICTED: probable ubiquitin-conjugatin	0.896	0.955	0.523	4e-89
357475435	319	hypothetical protein MTR_4g086440 [Medic	0.871	0.981	0.512	3e-88
238014016	507	unknown [Zea mays] gi|413946463|gb|AFW79	0.827	0.585	0.535	2e-84
413948411	504	hypothetical protein ZEAMMB73_421471 [Ze	0.827	0.589	0.517	2e-83

>gi|224101547|ref|XP_002312325.1| predicted protein [Populus trichocarpa] gi|222852145|gb|EEE89692.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/355 (65%), Positives = 271/355 (76%), Gaps = 25/355 (7%)

Query: 13  NGEIEETISFPQFDVVSDVSDHHYITSSF-----------TKKNGRD---HFPAGSHKKI 58
           +GEI+E   F QFDVVSD SDHHY+ ++            TK  G D   +  +G +KKI
Sbjct: 24  DGEIQEIDIFHQFDVVSDSSDHHYLVNNIDNDSSSSSSKKTKDGGGDSLTNISSGVYKKI 83

Query: 59  MQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPM 118
           MQEWKILEKHLP+SI+VR +ENRIDLLRAVI+G AGTPYHDGL+FFD+AFP DYP  PP+
Sbjct: 84  MQEWKILEKHLPDSIYVRAHENRIDLLRAVIIGVAGTPYHDGLYFFDIAFPPDYPARPPL 143

Query: 119 VHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPY 178
           V+YRSFGLR+NPNLYANGRVCLSLLNTW G+KSEKWN  ESTVLQVLVSIQALVLNEKPY
Sbjct: 144 VYYRSFGLRINPNLYANGRVCLSLLNTWPGRKSEKWNSSESTVLQVLVSIQALVLNEKPY 203

Query: 179 FNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVI 238
           +NEPG+G+ PGR+IWEKKS AY+E+VF LSCK+M FLLR PPKNFEGFV SHFRE+  VI
Sbjct: 204 YNEPGNGVLPGRAIWEKKSNAYSENVFFLSCKTMLFLLRRPPKNFEGFVASHFREKASVI 263

Query: 239 LSACKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRT 298
           LSAC +Y++G  RVGYY N+GS   G SS      VDVS+KF+GL+ QLYPEL+  F R 
Sbjct: 264 LSACNAYINGQTRVGYYRNDGSCSSGNSS-----TVDVSDKFKGLMGQLYPELLLGFKRN 318

Query: 299 GASLGSLTEQV--KFERKTVPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKK 351
           GASLG+  E      E KT  FKG+ V++ KK    SG AR VF K+K  LGLKK
Sbjct: 319 GASLGNFVEPSVQPVEMKTRSFKGKAVIQSKK----SGFARTVFAKLKRVLGLKK 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556414|ref|XP_002519241.1| conserved hypothetical protein [Ricinus communis] gi|223541556|gb|EEF43105.1| conserved hypothetical protein [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/331 (64%), Positives = 263/331 (79%), Gaps = 8/331 (2%)

Query: 1   MALTINTNPQKPNG----EIEETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGS-- 54
           MAL++ T  Q+       EI E   F +FDVVSD SDH+Y+ +   K NG D F   S  
Sbjct: 1   MALSVTTRSQREASNDVDEIAEMDIFHKFDVVSDSSDHYYVNNKAAKMNGGDCFSNISSK 60

Query: 55  -HKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
            HKKI++EW+ILEKHLP++I+VRVYENRIDLLRAVI+G AGTPYHDGL+FFD+AFP+DYP
Sbjct: 61  VHKKIIKEWRILEKHLPDTIYVRVYENRIDLLRAVIIGAAGTPYHDGLYFFDIAFPSDYP 120

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           + PP+V+Y+SFGLR+NPNLYANGRVCLSL+NTW GKKSEKWNP+ESTVLQVLVSIQALVL
Sbjct: 121 SRPPLVYYKSFGLRINPNLYANGRVCLSLVNTWHGKKSEKWNPNESTVLQVLVSIQALVL 180

Query: 174 NEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRE 233
           NEKPYFNEPG G+WPGR+IWEKKS +Y+EDVF+LSCK++ F LR PPKNFEGFV  HF+E
Sbjct: 181 NEKPYFNEPGIGIWPGRAIWEKKSNSYSEDVFVLSCKTVLFNLRRPPKNFEGFVVRHFKE 240

Query: 234 RGHVILSACKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVT 293
           R  +IL AC +Y++G V +GYY N  +S G  SS       +VS+KF+ +I+QLYPELV 
Sbjct: 241 RAPMILLACNAYVNGRVGIGYY-NYDTSDGSLSSTSRSLGTEVSQKFKAMILQLYPELVA 299

Query: 294 AFSRTGASLGSLTEQVKFERKTVPFKGEGVL 324
            F+R GA+L +L+EQ+K ERKT  F+ + V+
Sbjct: 300 GFTRIGAALENLSEQLKLERKTPSFRKQVVI 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431980|ref|XP_002278781.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/355 (61%), Positives = 258/355 (72%), Gaps = 18/355 (5%)

Query: 12  PNGEI----EETISFPQFDVVSDVSDHHYITSSFTKKNGRDHF---PAGSHKKIMQEWKI 64
           PNGEI    EE   F +FDVVSD SDHHY+  + T  +  D F    +G + KIMQEWKI
Sbjct: 3   PNGEIVEEAEEDNGFRRFDVVSDDSDHHYVKLNRTANSDADCFSNAASGVYSKIMQEWKI 62

Query: 65  LEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF 124
           LEK+LP+SIFVRVYE RIDLLRAVIVG  GTPYHDGLF FDLAFP DYP HPP VHYRSF
Sbjct: 63  LEKNLPDSIFVRVYERRIDLLRAVIVGAVGTPYHDGLFAFDLAFPPDYPAHPPQVHYRSF 122

Query: 125 GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGH 184
           GLRLNPNLYANGRVCLSLLNTW G+K EKW+P +STVLQVLVS+Q LVLNEKPYFNEPGH
Sbjct: 123 GLRLNPNLYANGRVCLSLLNTWVGRKKEKWDPSQSTVLQVLVSLQGLVLNEKPYFNEPGH 182

Query: 185 GMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKS 244
           G+ PGRS+WEK S AY+E VF LSCK+M F+LR PPKNFE  + +HFR+R   IL AC +
Sbjct: 183 GVLPGRSLWEKNSMAYSETVFALSCKTMLFMLRKPPKNFEALIAAHFRDRALFILEACNA 242

Query: 245 YLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGS 304
           Y  G V+VGYY  +GSS   +SS      V VS  F+  + +++P+LV  F+R GASLG+
Sbjct: 243 YTDGRVKVGYYRGDGSSSSSSSS--SSSTVHVSHTFKTSMQKVFPDLVHTFTRNGASLGN 300

Query: 305 LTEQVKFERKTVPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKK----NGVI 355
             EQVK +RK    + +  + +K+     GIA K   K+K+ LGLKK    NGV+
Sbjct: 301 FVEQVKQDRKKASSQTQAAVHKKQ-----GIAIKFISKLKMILGLKKSRKSNGVV 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519922|ref|XP_003528617.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/337 (52%), Positives = 222/337 (65%), Gaps = 23/337 (6%)

Query: 16  IEETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFV 75
           +E T  F  FDVVSD +DHH++ S+  K        +  ++ IM+EWKILE++LPESI+V
Sbjct: 1   MENTNGFVHFDVVSDDADHHFLGSN--KGKCFTDLKSEVYRTIMKEWKILEQNLPESIYV 58

Query: 76  RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYAN 135
           RVYE RIDL+RAVIVG AGTPYHDGLFFFD+ FP+DYP +PP +HY SFG R NPNLY++
Sbjct: 59  RVYERRIDLMRAVIVGAAGTPYHDGLFFFDIGFPSDYPKNPPKLHYHSFGYRHNPNLYSS 118

Query: 136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEK 195
           GRVCLSLLNTWTG+KSEKW+P  ST+LQVL+SIQALVLN+KPY+NEPG       S W  
Sbjct: 119 GRVCLSLLNTWTGRKSEKWDPSGSTMLQVLLSIQALVLNKKPYYNEPGLASIAS-SEW-- 175

Query: 196 KSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYY 255
           +S AYNE+VF+++C +   LLR PP NFE FV +HFR+R   ILSAC  Y +G  RVG+Y
Sbjct: 176 RSRAYNENVFLITCSTSLHLLRRPPFNFEAFVSAHFRQRAFRILSACSDYTNGRARVGHY 235

Query: 256 LNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKT 315
                             + VS  F+  ++  YP L+ AF + GASL    E ++ E K 
Sbjct: 236 ------SFDLRLSSSSSKLHVSRSFKKQMIAFYPRLLQAFRQNGASLEGFAEHLELESK- 288

Query: 316 VPFKGEGVLKQKKEKNTSGIARKVFGKIKVALGLKKN 352
                        E  + GI +KV  KIK A GLKKN
Sbjct: 289 -----------HSENKSGGIFKKVMEKIKKAFGLKKN 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87240608|gb|ABD32466.1| Ubiquitin-conjugating enzyme, E2 [Medicago truncatula]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 172/327 (52%), Positives = 219/327 (66%), Gaps = 5/327 (1%)

Query: 25  FDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDL 84
           FD+VSD SDH Y  ++       D   +  +K+IM+EWKILEK+LP+SI+VR YE RIDL
Sbjct: 8   FDLVSDDSDHKYRLNNIGGNCFSDT-KSAIYKRIMKEWKILEKNLPDSIYVRAYERRIDL 66

Query: 85  LRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLN 144
           LRAVIVG AGTPYHD LFFFD+ FP+DYPN PP + Y SFG  LNPNLY NG VCLSLL+
Sbjct: 67  LRAVIVGAAGTPYHDSLFFFDIQFPSDYPNKPPKIQYHSFGYFLNPNLYPNGMVCLSLLS 126

Query: 145 TWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV 204
           T+ G+K EKW+P  ST+LQVLVSIQ LVLNEKP FN P   ++  RS  EK+S A+ EDV
Sbjct: 127 TYVGEKCEKWDPSSSTILQVLVSIQGLVLNEKPLFNAPPFRVFK-RSFHEKRSRAFIEDV 185

Query: 205 FILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSGGG 264
           F+L+C ++  L+R PPKNFE FV+ HFRERGHV+L+AC+ Y++G V VGYY         
Sbjct: 186 FVLTCYTVVNLIRKPPKNFEDFVKEHFRERGHVLLAACREYVNGRVMVGYYNYNNKQMAS 245

Query: 265 ASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGVL 324
           +SS      + V E FQ  +   Y  +   F + GASL    ++++ E +    K     
Sbjct: 246 SSSSTSMTGIKVRESFQMSLRSAYGNMYMQFIKCGASLEGFLQELELEEQG---KDMSKS 302

Query: 325 KQKKEKNTSGIARKVFGKIKVALGLKK 351
           K K+     G+ +K  GKIK+ALGLKK
Sbjct: 303 KSKRSNGGGGVFKKAMGKIKLALGLKK 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359875|gb|ABD32474.2| Ubiquitin-conjugating enzyme, E2 [Medicago truncatula]

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/328 (52%), Positives = 221/328 (67%), Gaps = 5/328 (1%)

Query: 24  QFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRID 83
           +FD+VSD SDH Y   +    N   +  +  +K+IM+EWKILEK+LP+SI+VR YE+RID
Sbjct: 7   KFDLVSDDSDHKYRLDNIGG-NCFSNTRSSIYKRIMKEWKILEKNLPDSIYVRAYESRID 65

Query: 84  LLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLL 143
           LLRAVIVG AGTPYHDGLFFFD+ FP+DYPN PP +HY SFG  LNPNLY NG VCLSLL
Sbjct: 66  LLRAVIVGAAGTPYHDGLFFFDIQFPSDYPNIPPKIHYHSFGYSLNPNLYPNGMVCLSLL 125

Query: 144 NTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNED 203
           NT+ G+K EKW+P  ST+LQVLVSIQ LVLNEKP FN P + ++  RS  EKKS  + ED
Sbjct: 126 NTYVGEKCEKWDPSSSTILQVLVSIQGLVLNEKPLFNAPFYRVFK-RSFHEKKSRDFIED 184

Query: 204 VFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSGG 263
            F+ +C ++  L+R PPKNFE FV+ HFRERGHV+L+AC+ Y++G + VGYY        
Sbjct: 185 TFVRTCYTIVNLIRKPPKNFEVFVKEHFRERGHVLLAACREYVNGRLMVGYYNYNNKQMA 244

Query: 264 GASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGV 323
            +SS      + V E FQ  +   Y  +   F + GAS+    ++++ E +    K    
Sbjct: 245 SSSSSTSMTGIKVRESFQKSLQSAYGNMYKQFIKCGASVEGFLQELELEEQG---KDRSK 301

Query: 324 LKQKKEKNTSGIARKVFGKIKVALGLKK 351
            K K+    S I +K  GKIK+ALGLKK
Sbjct: 302 SKSKRSNGGSRIFKKAMGKIKLALGLKK 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564644|ref|XP_003550561.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max]

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/342 (52%), Positives = 229/342 (66%), Gaps = 20/342 (5%)

Query: 18  ETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGS--HKKIMQEWKILEKHLPESIFV 75
           +T  F  FDVVSD SDHH++ S+    NG+  + + S  ++ IM+EWKILE+ LPESI+V
Sbjct: 4   KTNEFGHFDVVSDDSDHHFLGSN----NGKCFYDSNSKVYRTIMKEWKILEQSLPESIYV 59

Query: 76  RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYAN 135
           RVYE RIDL+RAVIVGTAGTPYHDGLFFFD+ FP+DYP HPPM+H+ SFG R+NPNLY N
Sbjct: 60  RVYERRIDLMRAVIVGTAGTPYHDGLFFFDIMFPSDYPKHPPMLHFHSFGYRINPNLYIN 119

Query: 136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEK 195
           G+VCLSLLNTW GK +E W+P +ST+LQVLVSIQ LVLN+ PYFNEP           E 
Sbjct: 120 GKVCLSLLNTWNGKGTEMWDPSKSTMLQVLVSIQGLVLNKNPYFNEPLRLFDS-----ES 174

Query: 196 KSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYY 255
           KS  YNE+ FI++C +   LL+ P +NFE FV +HF ER   ILSAC  Y++G V VGYY
Sbjct: 175 KSRVYNENAFIITCYTSFLLLQRPLRNFEAFVSAHFCERAFPILSACSDYVNGRVEVGYY 234

Query: 256 LNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKT 315
            ++  S              VS +F+  ++Q YP+L  AF   GAS+G L E ++ E + 
Sbjct: 235 SSDLRSSSSTVR--------VSREFKEKMIQFYPKLFQAFRLKGASVGGLVEHLELEIEQ 286

Query: 316 VPFKGEGVLKQKKEKNTS-GIARKVFGKIKVALGLKKNGVIK 356
              K  G  ++++ KN S  I +KV  KIK  LG KK   I+
Sbjct: 287 SEKKSSGGGQRQQLKNKSRRIFKKVMEKIKQTLGWKKKSQIE 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475435|ref|XP_003608003.1| hypothetical protein MTR_4g086440 [Medicago truncatula] gi|355509058|gb|AES90200.1| hypothetical protein MTR_4g086440 [Medicago truncatula]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/330 (51%), Positives = 213/330 (64%), Gaps = 17/330 (5%)

Query: 25  FDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDL 84
           F++VSD SDH +++ + +    RD   +  +K+IM+EWKILE +LP+SI+V+ YE RIDL
Sbjct: 7   FEMVSDDSDHKFLSHNISGNCFRDT-KSALYKRIMKEWKILENNLPDSIYVKAYETRIDL 65

Query: 85  LRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLN 144
           LRAVIV  AGTPYHDGLFFFD+ FP DYPN PP +HY SFG  LNPNLY +G VCLSLLN
Sbjct: 66  LRAVIVSAAGTPYHDGLFFFDIQFPDDYPNSPPKIHYHSFGYSLNPNLYPDGTVCLSLLN 125

Query: 145 TWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV 204
           TW   K EKW+P  ST+LQ+LVSIQALVLNE P FNEP + ++  RS  E KS  YNEDV
Sbjct: 126 TWPSTKGEKWDPTRSTLLQLLVSIQALVLNECPLFNEPFYRIF-KRSFHETKSFTYNEDV 184

Query: 205 FILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSGGG 264
           F+ +C +   ++R PPKNFE FV+ HFRERGHV+L+ACK Y++GHVRVGYY    +    
Sbjct: 185 FVKTCHAAYLIIRTPPKNFEVFVKEHFRERGHVLLAACKEYVNGHVRVGYY-GYNTMDSS 243

Query: 265 ASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTEQVKFERKTVPFKGEGVL 324
           ++       ++V E FQ  +   Y  L T F   GASL +    ++FE +          
Sbjct: 244 SNRDNSSTVIEVRESFQVSLRSAYRRLYTKFKECGASLETFHHDLEFEVQV--------- 294

Query: 325 KQKKEKNTSGIARKVFGKIKVALGLKKNGV 354
                   SGI  K    IK ALG KK   
Sbjct: 295 -----NAGSGICEKAMAMIKQALGWKKEST 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238014016|gb|ACR38043.1| unknown [Zea mays] gi|413946463|gb|AFW79112.1| ubiquitin-conjugating enzyme E2 [Zea mays]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/310 (53%), Positives = 204/310 (65%), Gaps = 13/310 (4%)

Query: 7   TNPQKPNGEIEETI-----SFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQE 61
            N  KP+  +++ I     +F +FD V D SDH+Y      K            K+I  E
Sbjct: 191 ANKTKPSKAVDDKIEEKYKAFKRFDTVDDHSDHYYSKPESRKVQAVKKPSKDWVKRIQHE 250

Query: 62  WKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHY 121
           WK+LEK LPE+IFVR YE+R+DLLRAVI+G AGTPYHDGLFFFD+ FP  YPN PPMV+Y
Sbjct: 251 WKVLEKDLPETIFVRAYEDRMDLLRAVIMGPAGTPYHDGLFFFDIYFPPQYPNIPPMVNY 310

Query: 122 RSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNE 181
           R+ GLRLNPNLYA G+VCLSLLNTWTG   EKWNP  ST+LQVLVSIQALVLN KPYFNE
Sbjct: 311 RAGGLRLNPNLYACGKVCLSLLNTWTGSGCEKWNPANSTMLQVLVSIQALVLNAKPYFNE 370

Query: 182 PGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSA 241
           PG+ M    +  EKKS  YNED F+ SC++M + LRNPPKNFE FV  HFR+ G  IL A
Sbjct: 371 PGYAMHANTAHGEKKSLTYNEDTFLHSCRTMLYSLRNPPKNFEDFVAGHFRKYGRNILVA 430

Query: 242 CKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGAS 301
           C++YL G  +VG       SG G      G     S +F+  + +L+ EL+  F+  GA 
Sbjct: 431 CRAYLEG-AQVGCL-----SGDGVQDVDEGDK-SCSVRFKQSLKRLHEELLAEFTAKGAD 483

Query: 302 LGS-LTEQVK 310
            G  L+E+ +
Sbjct: 484 CGKFLSEKAR 493

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413948411|gb|AFW81060.1| hypothetical protein ZEAMMB73_421471 [Zea mays]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/319 (51%), Positives = 206/319 (64%), Gaps = 22/319 (6%)

Query: 7   TNPQKPNGEIEETI-----SFPQFDVVSDVSDHHYITSS-----FTKKNGRDHFPAGSHK 56
            N  KP   +++ I     +F +FD V D SDH+Y   +       KK  +D       K
Sbjct: 184 ANKTKPTKVVDDKIEEKYKAFKRFDTVDDHSDHYYSKPTSRKVQVVKKPSKDWV-----K 238

Query: 57  KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
           +I  EWK+LE+ LP++IFVR YE+R+DLLR VI+G AGTPYHDGLFFFD+ FP  YPN P
Sbjct: 239 RIQHEWKVLERDLPDTIFVRAYEDRMDLLRGVIMGPAGTPYHDGLFFFDIYFPPRYPNVP 298

Query: 117 PMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEK 176
           PMV+YR+ GLRLNPNLY  G+VCLSLLNTW G   EKWNP  ST+LQVLVSIQALVLN K
Sbjct: 299 PMVNYRAGGLRLNPNLYDCGKVCLSLLNTWDGSGCEKWNPANSTMLQVLVSIQALVLNAK 358

Query: 177 PYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGH 236
           P+FNEPG+ M    +  EKKS AYNED F+LSC++M + LRNPPKNFE FV  HFR+ G 
Sbjct: 359 PFFNEPGYAMHANTAHGEKKSLAYNEDTFLLSCRTMLYSLRNPPKNFEDFVAGHFRQHGR 418

Query: 237 VILSACKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFS 296
            IL AC++YL G  +VG       SG G      G     S +F+  + +L  EL+T F+
Sbjct: 419 NILVACRAYLDG-AQVGCL-----SGDGVQDVDEGD-TSCSVRFKQSLKKLVEELLTEFT 471

Query: 297 RTGASLGSLTEQVKFERKT 315
             GA  G    + K +R +
Sbjct: 472 VKGADCGKFLTEEKAKRSS 490

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2057589	907	PHO2 "AT2G33770" [Arabidopsis	0.740	0.293	0.507	4.8e-71
TAIR|locus:2039380	1102	UBC23 "AT2G16920" [Arabidopsis	0.796	0.259	0.468	6.5e-70
TAIR|locus:2090096	609	UBC25 "ubiquitin-conjugating e	0.635	0.374	0.566	1.7e-68
FB|FBgn0027512	1398	CG10254 [Drosophila melanogast	0.598	0.153	0.399	2.3e-39
UNIPROTKB|K7ES11	807	UBE2O "Ubiquitin-conjugating e	0.532	0.236	0.445	9.5e-39
UNIPROTKB|F1PG13	1138	UBE2O "Uncharacterized protein	0.532	0.167	0.450	1.1e-38
RGD|1307247	3786	Birc6 "baculoviral IAP repeat-	0.637	0.060	0.375	1.2e-38
UNIPROTKB|F1LT32	3794	Birc6 "Protein Birc6" [Rattus	0.637	0.060	0.375	1.2e-38
ZFIN|ZDB-GENE-091202-7	4870	birc6 "baculoviral IAP repeat-	0.587	0.043	0.409	1.6e-38
UNIPROTKB|F1S402	3423	BIRC6 "Uncharacterized protein	0.637	0.066	0.375	3.6e-38

TAIR|locus:2057589 PHO2 "AT2G33770" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 142/280 (50%), Positives = 185/280 (66%)

Query:    20 ISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYE 79
             + F QFD+V+D SDHH+++S   K   +        KK+ QEW  LE +LP +I+VRV E
Sbjct:   631 VRFRQFDMVNDCSDHHFLSSD--KGLAQSQVTKSWVKKVQQEWSNLEANLPNTIYVRVCE 688

Query:    80 NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVC 139
              R+DLLRA +VG  GTPYHDGLFFFD+  P  YP+ PPMVHY S G+RLNPNLY +GRVC
Sbjct:   689 ERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVC 748

Query:   140 LSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTA 199
             LSLLNTW+G  +E WN   S++LQ+L+S QALVLNEKPYFNE G+    GR+  EK S +
Sbjct:   749 LSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNEAGYDKQLGRAEGEKNSVS 808

Query:   200 YNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEX 259
             YNE+ F+++CKSM  +LR PPK+FE  V+ HF  R   +L+ACK+Y+ G V VG   N  
Sbjct:   809 YNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKAYMEG-VPVGSSANLQ 867

Query:   260 XXXXXXXXXXXXXXVDVSEKFQGLIVQLYPELVTAFSRTG 299
                              S  F+ ++ +LYP+L+ AFS  G
Sbjct:   868 GNSTTN-----------STGFKIMLSKLYPKLLEAFSEIG 896

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055062 "phosphate ion homeostasis" evidence=IMP

GO:0006301 "postreplication repair" evidence=RCA

GO:0006817 "phosphate ion transport" evidence=IMP

TAIR|locus:2039380 UBC23 "AT2G16920" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 6.5e-70, P = 6.5e-70
 Identities = 139/297 (46%), Positives = 189/297 (63%)

Query:     4 TINTNPQKPNGEIEETISFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWK 63
             T   +  KP     ++ SF +FD+  D  DHH++     K   R  F     KK+ Q+WK
Sbjct:   806 TFLEDEDKPVPSEGDSCSFRRFDISQDPLDHHFLGVDGQKTKERQWF-----KKVDQDWK 860

Query:    64 ILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
             IL+ +LP+ IFVR YE+R+DLLRAVIVG  GTPY DGLFFFD   P+DYP+ PP  +Y S
Sbjct:   861 ILQNNLPDGIFVRAYEDRMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHS 920

Query:   124 FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPG 183
              G RLNPNLY  G+VCLSLLNTWTG+ +E W+P  S++LQVLVS+Q LVLN KPYFNE G
Sbjct:   921 GGWRLNPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAG 980

Query:   184 HGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACK 243
             +    G +  EK S  YNE+ F+L+CK+M +L+R PPK+FE  ++ HFR+RG+ IL AC 
Sbjct:   981 YDKQVGTAEGEKNSLGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYILKACD 1040

Query:   244 SYLSGHVRVGYYLNEXXXXXXXXXXXXXXXVDVSEKFQGLIVQLYPELVTAFSRTGA 300
             +Y+ G++ +G    +                  S  F+ ++ ++ P+L +A S  GA
Sbjct:  1041 AYMKGYL-IGSLTKDASVIDERSSANST-----SVGFKLMLAKIAPKLFSALSEVGA 1091

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006301 "postreplication repair" evidence=RCA

TAIR|locus:2090096 UBC25 "ubiquitin-conjugating enzyme 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 132/233 (56%), Positives = 162/233 (69%)

Query:    22 FPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENR 81
             F +FD+V D SDHHY +   T K     +     K+I  EW+ILEK LPE IFVR YE+R
Sbjct:   305 FKRFDIVEDFSDHHYASKGTTSKQHSKDWA----KRIQDEWRILEKDLPEMIFVRAYESR 360

Query:    82 IDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLS 141
             +DLLRAVI+G  GTPYHDGLFFFD+ FP  YP+ PP+VHY S GLR+NPNLY  G+VCLS
Sbjct:   361 MDLLRAVIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYNCGKVCLS 420

Query:   142 LLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYN 201
             LL TW+G + EKW P+ ST+LQVLVSIQ L+LN+KPYFNEPG+    G +  E  S AY+
Sbjct:   421 LLGTWSGNQREKWIPNTSTMLQVLVSIQGLILNQKPYFNEPGYERSAGSAHGESTSKAYS 480

Query:   202 EDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGY 254
             E+ FILS K+M + +R PPK FE F   HF    H +L AC +Y +G    GY
Sbjct:   481 ENTFILSLKTMVYTMRRPPKYFEDFAYGHFFSCAHDVLKACNAYRNG-ATPGY 532

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

FB|FBgn0027512 CG10254 [Drosophila melanogaster (taxid:7227)]

 Score = 433 (157.5 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 89/223 (39%), Positives = 132/223 (59%)

Query:    25 FDVVSDV-SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRID 83
             F V+ +  + H++I++  T  N   +      + + +E+ +L+  LP  + VR YE+R+D
Sbjct:  1097 FQVLPNAPAAHNFISNLITPANKAQY-----QRAVQREYLMLKSSLPNGVVVRAYEDRMD 1151

Query:    84 LLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGL-RLNPNLYANGRVCLSL 142
             L+  ++VG   TPY + LFFFD  F  DYP  PP+ HY S+   RLNPNLY  GRVC+SL
Sbjct:  1152 LMSVMMVGPKRTPYQNALFFFDFQFGRDYPKSPPVCHYISYCTDRLNPNLYEGGRVCVSL 1211

Query:   143 LNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNE 202
             L TW G+ +E W+P  ST+LQVLVSIQ L+L ++PY+NE G+    G  +  + S  YNE
Sbjct:  1212 LGTWMGRDNEVWSPS-STMLQVLVSIQGLILVDEPYYNEAGYEKQRGTQLGNENSRVYNE 1270

Query:   203 DVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSY 245
                I   +S    L NPP  F   +  HF+E G  + +  +++
Sbjct:  1271 MAIIKIAQSTVKQLTNPPLIFRNELIEHFKEFGTELYARMRAW 1313

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|K7ES11 UBE2O "Ubiquitin-conjugating enzyme E2 O" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
 Identities = 86/193 (44%), Positives = 117/193 (60%)

Query:    58 IMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPP 117
             + +E  +L   LPE I V+ +E+R+DL  A+I G   TPY DGL+ FD+  P  YP  PP
Sbjct:   473 VRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 532

Query:   118 MVHYRS-FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEK 176
                Y S    RLNPNLY NG+VC+SLL TW GK +E+W   +S++LQVL+SIQ L+L  +
Sbjct:   533 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNE 591

Query:   177 PYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGH 236
             PY+NE G     G     + S  YNE   I   +SMT L+R PP+ FE  +R HF   G 
Sbjct:   592 PYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGW 651

Query:   237 VILSACKSYLSGH 249
              +++  +S+L  H
Sbjct:   652 RLVNRIESWLETH 664

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F1PG13 UBE2O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 87/193 (45%), Positives = 118/193 (61%)

Query:    58 IMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPP 117
             + +E  +L   LP+ I V+ +E+R+DL  A+I G   TPY DGL+ FD+  P  YP  PP
Sbjct:   804 VRKEMALLATSLPDGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPP 863

Query:   118 MVHYRS-FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEK 176
                Y S    RLNPNLY NG+VC+SLL TW GK +E+W   +S++LQVL+SIQ L+L  +
Sbjct:   864 HFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNE 922

Query:   177 PYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGH 236
             PY+NE G     G     + S  YNE   I   +SMT L+R PP+ FE  +R HFR  G 
Sbjct:   923 PYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHFRTGGW 982

Query:   237 VILSACKSYLSGH 249
              ++S  +S+L  H
Sbjct:   983 RLVSRIESWLETH 995

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

RGD|1307247 Birc6 "baculoviral IAP repeat-containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 432 (157.1 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 93/248 (37%), Positives = 145/248 (58%)

Query:    16 IEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEK 67
             + +T+ F  F++VS+  D        +HY++     KN  D   A   +++ QE   L  
Sbjct:  3460 VMKTLQFDTFEMVSEDDDGKLGFKVNYHYMSQV---KNANDANSAARARRLAQEAVTLST 3516

Query:    68 HLP----ESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
              LP     S+FVR  E R+D+++ +I G A TPY +G F FD+ FP DYP+ PP+V+  +
Sbjct:  3517 SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 3576

Query:   124 FG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFN 180
              G   +R NPNLY +G+VCLS+LNTW G+  EKWNP  S+ LQVLVS+Q+L+L  +PYFN
Sbjct:  3577 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFN 3636

Query:   181 EPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEGFVRSHFRERGHVIL 239
             EPG+    G     + S  Y+ ++   + K +M   +RNP   F+  +  HF  +   ++
Sbjct:  3637 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEVM 3696

Query:   240 SACKSYLS 247
             + C+ +++
Sbjct:  3697 AQCEEWIA 3704

GO:0000922 "spindle pole" evidence=ISO

GO:0001890 "placenta development" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0030496 "midbody" evidence=ISO

GO:0032465 "regulation of cytokinesis" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0060711 "labyrinthine layer development" evidence=ISO

GO:0060712 "spongiotrophoblast layer development" evidence=ISO

UNIPROTKB|F1LT32 Birc6 "Protein Birc6" [Rattus norvegicus (taxid:10116)]

 Score = 432 (157.1 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 93/248 (37%), Positives = 145/248 (58%)

Query:    16 IEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEK 67
             + +T+ F  F++VS+  D        +HY++     KN  D   A   +++ QE   L  
Sbjct:  3468 VMKTLQFDTFEMVSEDDDGKLGFKVNYHYMSQV---KNANDANSAARARRLAQEAVTLST 3524

Query:    68 HLP----ESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
              LP     S+FVR  E R+D+++ +I G A TPY +G F FD+ FP DYP+ PP+V+  +
Sbjct:  3525 SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 3584

Query:   124 FG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFN 180
              G   +R NPNLY +G+VCLS+LNTW G+  EKWNP  S+ LQVLVS+Q+L+L  +PYFN
Sbjct:  3585 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFN 3644

Query:   181 EPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEGFVRSHFRERGHVIL 239
             EPG+    G     + S  Y+ ++   + K +M   +RNP   F+  +  HF  +   ++
Sbjct:  3645 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEVM 3704

Query:   240 SACKSYLS 247
             + C+ +++
Sbjct:  3705 AQCEEWIA 3712

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

ZFIN|ZDB-GENE-091202-7 birc6 "baculoviral IAP repeat-containing 6" [Danio rerio (taxid:7955)]

 Score = 431 (156.8 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
 Identities = 91/222 (40%), Positives = 134/222 (60%)

Query:    33 DHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLP----ESIFVRVYENRIDLLRAV 88
             ++HY++     KN  D   A   +++ QE   L   LP     S+FVR  E R+D+++ +
Sbjct:  4569 NYHYLSQV---KNASDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVL 4625

Query:    89 IVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNT 145
             I G A TPY +G F FD+ FP DYPN PP+V+  + G   +R NPNLY +G+VCLS+LNT
Sbjct:  4626 ITGPADTPYANGCFEFDVYFPQDYPNSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 4685

Query:   146 WTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVF 205
             W G+  EKWNP  S+ LQVLVSIQ+L+L  +PYFNEPG+    G     + S  Y+ ++ 
Sbjct:  4686 WHGRPEEKWNPQTSSFLQVLVSIQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIR 4745

Query:   206 ILSCK-SMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYL 246
               + K +M   +RNP   F+  +  HF  +   I++ C+S++
Sbjct:  4746 QATVKWAMLEQMRNPSPCFKEVIHRHFYLKRAEIMAQCESWI 4787

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1S402 BIRC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 427 (155.4 bits), Expect = 3.6e-38, P = 3.6e-38
 Identities = 93/248 (37%), Positives = 144/248 (58%)

Query:    16 IEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEK 67
             + + + F  F++VS+  D        +HY++     KN  D   A   +++ QE   L  
Sbjct:  3097 VMKKLQFDTFEMVSEDEDGKLGFKVNYHYMSQV---KNANDANSAARARRLAQEAVTLST 3153

Query:    68 HLP----ESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
              LP     S+FVR  E R+D+++ +I G A TPY +G F FD+ FP DYP+ PP+V+  +
Sbjct:  3154 SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 3213

Query:   124 FG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFN 180
              G   +R NPNLY +G+VCLS+LNTW G+  EKWNP  S+ LQVLVS+Q+L+L  +PYFN
Sbjct:  3214 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFN 3273

Query:   181 EPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEGFVRSHFRERGHVIL 239
             EPG+    G     + S  Y+ ++   + K +M   +RNP   F+  +  HF  +   I+
Sbjct:  3274 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIM 3333

Query:   240 SACKSYLS 247
             + C+ +++
Sbjct:  3334 AQCEEWIA 3341

GO:0060712 "spongiotrophoblast layer development" evidence=IEA

GO:0060711 "labyrinthine layer development" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032465 "regulation of cytokinesis" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	4e-37
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-31
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-28
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	5e-22
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	6e-13
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	3e-09
pfam05743	119	pfam05743, UEV, UEV domain	0.002

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  130 bits (329), Expect = 4e-37
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 13/152 (8%)

Query: 55  HKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
            K++ +E K L+K  P  I     E  +      I G   TPY  G+F  D+ FP DYP 
Sbjct: 1   SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60

Query: 115 HPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
            PP V + +     +PN+  NG++CLS+L T        W+P   T+  VL+S+Q+L+  
Sbjct: 61  KPPKVRFVT--KIYHPNVDENGKICLSILKTHG------WSP-AYTLRTVLLSLQSLLNE 111

Query: 175 EKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI 206
             P  ++P +       ++++    + +    
Sbjct: 112 --PNPSDPLNAE--AAKLYKENREEFKKKARE 139

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  115 bits (291), Expect = 1e-31
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 19/150 (12%)

Query: 58  IMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPP 117
           + +E K L K  P  I     ++ +      I+G  GTPY  G+F  D+ FP DYP  PP
Sbjct: 2   LQKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPP 61

Query: 118 MVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL---N 174
            V + +     +PN+  +G +CL +L          W+P   T+ QVL+SIQ+L+     
Sbjct: 62  KVKFTT--KIYHPNVDPSGEICLDILKDEN------WSP-ALTIEQVLLSIQSLLSEPNP 112

Query: 175 EKPYFNEPGHGMWPGRSIWEKKSTAYNEDV 204
           E P   E          ++ K    + + V
Sbjct: 113 EDPLNAEAAK-------LYRKNREEFEKKV 135

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  107 bits (270), Expect = 2e-28
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 14/158 (8%)

Query: 57  KIMQEWKILEKHLPESIF-VRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           ++++E K L K  P       V +  +      IVG  GTPY  G+F   + FP DYP  
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFK 60

Query: 116 PPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175
           PP V + +     +PN+ ++G +CL +L        EKW+P   T+  VL+S+Q+L+   
Sbjct: 61  PPKVKFIT--KIYHPNVDSSGEICLDILKQ------EKWSP-ALTLETVLLSLQSLLSEP 111

Query: 176 KPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT 213
            P              +++K    + +     + K   
Sbjct: 112 NPDSPLNA----DAAELYKKNREEFKKKAREWTKKYAE 145

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 90.4 bits (225), Expect = 5e-22
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 13/127 (10%)

Query: 53  GSHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
            + K++++E K L+K  P  I    V ++ +    A I G   TPY  G+F   L FP D
Sbjct: 5   SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPED 64

Query: 112 YPNHPPMVHYRSFGLRLN-PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP V    F  ++  PN+  +G VCL +L        ++W+P   T+  +L+S+Q+
Sbjct: 65  YPFKPPKV---RFTTKIFHPNVDPSGNVCLDILK-------DRWSP-VYTLETILLSLQS 113

Query: 171 LVLNEKP 177
           L+L+  P
Sbjct: 114 LLLSPNP 120

Length = 153

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 65.2 bits (158), Expect = 6e-13
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 12/123 (9%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E K L K  P +      +  +    A I+G + +PY  G+FF  + FP DYP  
Sbjct: 4   KRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFK 63

Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V + +   ++ +PN+ +NG +CL +L        ++W+P   TV +VL+SI +L+ +
Sbjct: 64  PPKVQFTT---KIYHPNINSNGSICLDILR-------DQWSP-ALTVSKVLLSISSLLTD 112

Query: 175 EKP 177
             P
Sbjct: 113 PNP 115

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E + L    P  I            + ++ G  GTPY  G +  +L  P  YP  
Sbjct: 5   KRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPME 64

Query: 116 PPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQ---VLVSIQALV 172
           PP V  R      +PN+   GR+CL +L        +KW+P     LQ   VL+SIQAL+
Sbjct: 65  PPKV--RFLTKIYHPNIDKLGRICLDILK-------DKWSP----ALQIRTVLLSIQALL 111

Query: 173 LNEKP 177
              +P
Sbjct: 112 SAPEP 116

Length = 152

>gnl|CDD|203324 pfam05743, UEV, UEV domain

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 16/100 (16%)

Query: 83  DLLRAVIVGTAGTPYHDGLFFFDLAF--PADYPNHPPMVHYR---SFGLRLNPNLYANGR 137
            LL   + GT    Y    +   +    P  YP  PP+   +      +++N ++ A GR
Sbjct: 31  LLLN--LYGTIPVTYRGNTYNIPILIWLPDTYPFSPPICFVKPTPDMVIKVNHHVDAQGR 88

Query: 138 VCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP 177
           V L  L+ W    S          L  LV   A V  E+P
Sbjct: 89  VYLPYLHNWNHPSSN---------LVDLVQELAQVFGEEP 119

This family includes the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other human malignancies. However, the involvement of this gene in neoplastic transformation and tumorigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but that this gene is not a tumour suppressor for sporadic forms of breast cancer. This family is related to the ubiquitin conjugating enzymes. Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.92
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.92
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.83
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.78
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.01
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.04
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.04
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	97.79
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	97.63
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.21
KOG3357	167	consensus Uncharacterized conserved protein [Funct	96.72
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	96.04
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	95.13
smart00591	107	RWD domain in RING finger and WD repeat containing	94.01
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	89.08

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-58  Score=489.55  Aligned_cols=272  Identities=50%  Similarity=0.819  Sum_probs=249.9

Q ss_pred             CCceeeCCCCCCccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeE
Q 018254           23 PQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLF  102 (359)
Q Consensus        23 ~~f~~v~~~~dh~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F  102 (359)
                      .+|||+.|..||||......+     ...+.|++..+.||+.|..++|.||+||.+|+|||+++++|+||.||||++|+|
T Consensus       826 ~~F~v~~~~~~~h~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f  900 (1101)
T KOG0895|consen  826 LRFDVNYDYMDHHKNANDGNK-----AAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLF  900 (1101)
T ss_pred             ccccccCchHHHhhhhccccc-----HHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceE
Confidence            899999999999999763222     222479999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCeeeecccccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCC
Q 018254          103 FFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEP  182 (359)
Q Consensus       103 ~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP  182 (359)
                      +|||.||++||..||.|+|+|.++|+|||+|++|+||||||+||.|.+.|.|+|+ |+|+|||+|||+|+++.+||||||
T Consensus       901 ~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~-s~~lq~l~s~q~l~l~~~py~ne~  979 (1101)
T KOG0895|consen  901 FFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPS-SSILQVLVSIQGLVLNEEPYFNEA  979 (1101)
T ss_pred             EEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcc-hhHHHHHHHhhhhhcccccccCcc
Confidence            9999999999999999999999999999999999999999999999999999995 699999999999999999999999


Q ss_pred             CCCCchhhhhHHHcHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhHHHHHHHHHHhccCcccceeccCCCCC
Q 018254          183 GHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSG  262 (359)
Q Consensus       183 ~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~~~l~~pp~~Fe~~V~~hf~~r~~~Il~~~~~~~~~~~~vg~~~~~~~~~  262 (359)
                      ||+.+.|+.+++++++.||++++..+|++|+++||+||+.|+++|..||+.|+..|+++|++|+.| .+.|...++....
T Consensus       980 gy~~~~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~~p~~~~~e~i~~Hf~~~~~ei~~~c~a~~~~-~~~~s~~k~~v~d 1058 (1101)
T KOG0895|consen  980 GYEKQRGTAEGEKNSRVYNENAFLLTCKSMVYQLRKPPKCFEEVIHKHFYLRGVEIMAACEAWIAG-ILQGSSDKRVVSD 1058 (1101)
T ss_pred             cccccccccccccccccccchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhcccccchhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999 5788877766321


Q ss_pred             CCCCCCCCCCCccCChhHHHHHHHHHHHHHHHHHHcCCcchhhhh
Q 018254          263 GGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTE  307 (359)
Q Consensus       263 ~~~~~~~~~~~~~~s~~f~~~l~~~~~~l~~~f~~~g~~~~~~~~  307 (359)
                      - .+     +....+.+||.+|.++-+.+..++.+.|+.+..+..
T Consensus      1059 ~-~~-----a~ks~s~~~k~~l~~~~~~~~~~~~~~~a~~~~~~~ 1097 (1101)
T KOG0895|consen 1059 H-AA-----ALKSHSAQFKEELLKLPCPEGLAPDTVGAPEVCEAT 1097 (1101)
T ss_pred             h-HH-----HHhccchhhhhhhhhCCcccccchhhcCchhhhhcc
Confidence            1 11     245679999999999999999999999998766543

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.3e-42  Score=301.87  Aligned_cols=147  Identities=30%  Similarity=0.586  Sum_probs=141.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      +.+.+||++|++.|++++|.+|++.+..+ |+..|+++|.||++||||||.|++.|.||++||++||+|+|.|++|  ||
T Consensus         4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~--HP   81 (153)
T COG5078           4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF--HP   81 (153)
T ss_pred             hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc--CC
Confidence            34899999999999999999999999887 9999999999999999999999999999999999999999999987  99


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      |||.+|+||||+|+       +.|+|.+ +|.+||++||+||.+||+  ++|++.  +|+.+|++|+++|+++|+.++.+
T Consensus        82 NV~~~G~vCLdIL~-------~~WsP~~-~l~sILlsl~slL~~PN~--~~Pln~--daa~~~~~d~~~y~~~vr~~~~~  149 (153)
T COG5078          82 NVDPSGNVCLDILK-------DRWSPVY-TLETILLSLQSLLLSPNP--DSPLNT--EAATLYREDKEEYEKKVREWVKK  149 (153)
T ss_pred             CcCCCCCChhHHHh-------CCCCccc-cHHHHHHHHHHHHcCCCC--CCCCCh--HHHHHHHhCHHHHHHHHHHHHHH
Confidence            99999999999998       8999999 999999999999999999  999999  78999999999999999999887


Q ss_pred             HH
Q 018254          211 SM  212 (359)
Q Consensus       211 ~m  212 (359)
                      ++
T Consensus       150 ~~  151 (153)
T COG5078         150 YA  151 (153)
T ss_pred             hc
Confidence            65

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-42  Score=298.81  Aligned_cols=146  Identities=29%  Similarity=0.577  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      +.+||.+|++.|++++|+||.+.+.++|++.|+|+|.||.|||||||.|+++|+||++||+.||+|+|+|+||  ||||+
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIy--HPNI~   79 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIY--HPNID   79 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccc--cCCcC
Confidence            4579999999999999999999999999999999999999999999999999999999999999999999988  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT  213 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~  213 (359)
                      ..|.|||+||+       +.|+|+. +|..||+||++||.+|||  ++|+..  +.+.+|+.|+.+|++.||.+|.+++.
T Consensus        80 ~~G~IclDILk-------~~WsPAl-~i~~VllsI~sLL~~Pnp--ddPL~~--~ia~~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   80 SNGRICLDILK-------DQWSPAL-TISKVLLSICSLLSDPNP--DDPLVP--DIAELYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             ccccchHHhhh-------ccCChhh-HHHHHHHHHHHHhcCCCC--CccccH--HHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            99999999998       6799998 999999999999999999  999999  56999999999999999999998764

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-40  Score=282.71  Aligned_cols=150  Identities=31%  Similarity=0.619  Sum_probs=142.3

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      |+..|.+||+++++.|++++|.||+..|.++|+++|.++|+||.+|||+||.|++.|.|+.+||.+||.|+|.|..  ||
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~m--FH   78 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKM--FH   78 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeec--cC
Confidence            4556899999999999999999999999999999999999999999999999999999999999999999999995  49


Q ss_pred             CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||||.+|.+||++|.       .+|+|.+ ++..||.|||+||.+|+|  ++|+|.  +|+.+|.+++++|+++|+..+.
T Consensus        79 PNvya~G~iClDiLq-------NrWsp~Y-dva~ILtsiQslL~dPn~--~sPaN~--eAA~Lf~e~~rey~rrVk~~ve  146 (152)
T KOG0419|consen   79 PNVYADGSICLDILQ-------NRWSPTY-DVASILTSIQSLLNDPNP--NSPANS--EAARLFSENKREYERRVKETVE  146 (152)
T ss_pred             CCcCCCCcchHHHHh-------cCCCCch-hHHHHHHHHHHHhcCCCC--CCcccH--HHHHHHhhChHHHHHHHHHHHH
Confidence            999999999999997       7999999 999999999999999999  999998  7899999999999999988776


Q ss_pred             HHHH
Q 018254          210 KSMT  213 (359)
Q Consensus       210 k~m~  213 (359)
                      +++.
T Consensus       147 qsw~  150 (152)
T KOG0419|consen  147 QSWS  150 (152)
T ss_pred             Hhhc
Confidence            6654

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=4.7e-39  Score=284.81  Aligned_cols=146  Identities=27%  Similarity=0.471  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      ++|||++|+++|++++++||.+.+.++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  ||||+
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~--HPNV~   80 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIY--HPNID   80 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCe--eceEC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999987  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT  213 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~  213 (359)
                      .+|.||+++|+       +.|+|++ ||.+||++|++||.+|++  ++|.+.  +++.+|.+|...|.++|+.++.+++.
T Consensus        81 ~~G~iCl~iL~-------~~W~p~~-ti~~iL~~i~~ll~~P~~--~~pln~--~aa~~~~~d~~~f~~~a~~~~~~~a~  148 (152)
T PTZ00390         81 KLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPEP--DDPLDT--SVADHFKNNRADAEKVAREWNQKYAK  148 (152)
T ss_pred             CCCeEECccCc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCchHH--HHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999997       7899998 999999999999999999  999987  78999999999999999999887654

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=3.4e-38  Score=277.76  Aligned_cols=145  Identities=29%  Similarity=0.567  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      +.+||++|+++|+++++.++.+.+.++|+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++  ||||+
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPNv~   79 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIY--HPNIN   79 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcc--cceEC
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999987  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      .+|.|||++|+       +.|+|++ +|.+||++|++||.+|++  ++|.+.  +++.+|.++...|.++|+.++.+++
T Consensus        80 ~~G~iCl~il~-------~~W~p~~-ti~~il~~i~~ll~~P~~--~~p~n~--~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         80 SNGSICLDILR-------DQWSPAL-TVSKVLLSISSLLTDPNP--DDPLVP--EIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CCCEEEcccCc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCchHH--HHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            99999999997       7899998 999999999999999999  999998  6799999999999999999887643

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-37  Score=328.00  Aligned_cols=262  Identities=41%  Similarity=0.709  Sum_probs=232.3

Q ss_pred             CCCCceeeCCCCCCccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCC
Q 018254           21 SFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDG  100 (359)
Q Consensus        21 ~~~~f~~v~~~~dh~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG  100 (359)
                      .++.|+++.+..+|||...    .......++.+.+|+++|++.|.+++|+||++++++.||+..+++|.||.||||++|
T Consensus       254 ~i~kf~~~ed~~~~~~~~k----~~~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~g  329 (1101)
T KOG0895|consen  254 LIPKFKLVEDKSFHHYAKK----GKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADG  329 (1101)
T ss_pred             chhhhcccccccccccccc----CCCCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCC
Confidence            6789999999999999976    344555678899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCCCCCCCeeeeccc-ccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCC
Q 018254          101 LFFFDLAFPADYPNHPPMVHYRSF-GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYF  179 (359)
Q Consensus       101 ~F~f~I~fP~dYP~~PP~V~f~T~-i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~  179 (359)
                      +|.|+|.||..||..||.|+|+|. .+|++||+|.+|+||||+|+||.|...+.|+|..++|.|+|++||.++.+..||+
T Consensus       330 lf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py~  409 (1101)
T KOG0895|consen  330 LFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPYF  409 (1101)
T ss_pred             ceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCccc
Confidence            999999999999999999999999 6899999999999999999999999899999997799999999999999999999


Q ss_pred             CCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhHHHHHHHHHHhccCcccceeccCC
Q 018254          180 NEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEG  259 (359)
Q Consensus       180 neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~~~l~~pp~~Fe~~V~~hf~~r~~~Il~~~~~~~~~~~~vg~~~~~~  259 (359)
                      ++|++....+.......++.|.+.+...+...|++-+++||..|+..+++||..+.+.++.+|..|-.++ .+|....+.
T Consensus       410 ne~ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~-tl~~~~~~~  488 (1101)
T KOG0895|consen  410 NEPGALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGA-TLGAKVDGI  488 (1101)
T ss_pred             ccccccccccCCCccccccccccchhhhhhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCc-ChhhcCCCc
Confidence            9999998777777888999999999888889998889999999999999999999999999999999885 466544322


Q ss_pred             CCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHH
Q 018254          260 SSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVT  293 (359)
Q Consensus       260 ~~~~~~~~~~~~~~~~~s~~f~~~l~~~~~~l~~  293 (359)
                      .+      ..+.+....+..|+..|..+...+++
T Consensus       489 p~------~r~ea~gs~~~~~~~dL~~~~Eq~le  516 (1101)
T KOG0895|consen  489 PS------GREEAAGSIELKFPTDLAGFAEQVLE  516 (1101)
T ss_pred             cc------ccccccccccccchhhhhhHHHHHHH
Confidence            11      11112344677788888888777665

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-36  Score=254.29  Aligned_cols=154  Identities=27%  Similarity=0.536  Sum_probs=141.1

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      +..++|||++||++|..++|+||.+.| +|+|++.|.|+|.||+||||+||+|-.++.||.|||.+||+++|...++  |
T Consensus         2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f--H   79 (165)
T KOG0426|consen    2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF--H   79 (165)
T ss_pred             chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc--c
Confidence            456899999999999999999999987 5788999999999999999999999999999999999999999999976  9


Q ss_pred             CCcCCCCceeeccccccCCC-------CCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGK-------KSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNE  202 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~-------~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne  202 (359)
                      ||||.+|+||+|||... |+       ..|+|+|.+ ++..||+|+.+||.+||-  .+++|.  .|..+|++++.+|++
T Consensus        80 PNiy~dG~VCISILHaP-GDDP~~YEls~ERWSPVQ-SvEKILLSV~SMLaEPNd--ESgANv--dA~~mWRe~R~ef~~  153 (165)
T KOG0426|consen   80 PNIYPDGRVCISILHAP-GDDPMGYELSAERWSPVQ-SVEKILLSVVSMLAEPND--ESGANV--DACKMWREDREEFEK  153 (165)
T ss_pred             CcccCCCeEEEEEeeCC-CCCCccchhhhhcCChHH-HHHHHHHHHHHHHcCCCc--ccCccc--HHHHHHHHhHHHHHH
Confidence            99999999999999753 32       469999999 899999999999999987  677666  789999999999999


Q ss_pred             HHHHHHHHHH
Q 018254          203 DVFILSCKSM  212 (359)
Q Consensus       203 ~v~~~t~k~m  212 (359)
                      .|+.+++++.
T Consensus       154 i~~~lvrKtL  163 (165)
T KOG0426|consen  154 IAKRLVRKTL  163 (165)
T ss_pred             HHHHHHHHhh
Confidence            9999888764

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-35  Score=256.40  Aligned_cols=154  Identities=27%  Similarity=0.464  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEee-cCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVY-ENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~-e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      +..-|+++|+.|++++.+|+.+... +.|+..|.+.|+||++|+|+||.|+..+.||.|||.+||+++|.|.+|  ||||
T Consensus         6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw--HPNv   83 (171)
T KOG0425|consen    6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW--HPNV   83 (171)
T ss_pred             hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc--CCCc
Confidence            6677899999999999999999865 559999999999999999999999999999999999999999999987  9999


Q ss_pred             CCCCceeeccccccC------CCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHH
Q 018254          133 YANGRVCLSLLNTWT------GKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI  206 (359)
Q Consensus       133 y~~GkVCLslL~tw~------G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~  206 (359)
                      |++|+||+|||..-.      +..+|+|+|.+ |+.+||+||.+||.+||.  ++|+|.  +|+.+|+++.++|.++|+.
T Consensus        84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~-tvetIllSiIsmL~~PN~--~SPANV--DAa~~~Ren~~EykkkV~r  158 (171)
T KOG0425|consen   84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQ-TVETILLSIISMLNSPND--ESPANV--DAAKEWRENPEEYKKKVRR  158 (171)
T ss_pred             CCCCCEEEEeecCCCCCcccCCChhhccCCcc-chhHhHHHHHHHHcCCCC--CCccch--HHHHHHhhCHHHHHHHHHH
Confidence            999999999997521      23579999998 999999999999999998  999998  7899999999999999999


Q ss_pred             HHHHHHHH
Q 018254          207 LSCKSMTF  214 (359)
Q Consensus       207 ~t~k~m~~  214 (359)
                      +++++...
T Consensus       159 ~vr~s~e~  166 (171)
T KOG0425|consen  159 CVRRSQEE  166 (171)
T ss_pred             HHHHHHHh
Confidence            99876543

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=4.4e-35  Score=254.07  Aligned_cols=138  Identities=33%  Similarity=0.651  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCC
Q 018254           57 KIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYAN  135 (359)
Q Consensus        57 RL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~  135 (359)
                      ||++|++.|+++++.|+.+.+.++ ++..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++  ||||+.+
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~--HPni~~~   78 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIF--HPNIDEN   78 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-S--BTTB-TT
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccc--ccccccc
Confidence            899999999999999999999987 9999999999999999999999999999999999999999999987  9999999


Q ss_pred             CceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       136 GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                      |+||+++|+      .+.|+|.+ +|.+||.+|++||.+|++  ++|.+.  +|+.++.++++.|.++|+.+
T Consensus        79 G~icl~~l~------~~~W~p~~-~i~~il~~i~~ll~~p~~--~~~~n~--~a~~~~~~~~~~f~~~~~~~  139 (140)
T PF00179_consen   79 GRICLDILN------PESWSPSY-TIESILLSIQSLLSEPNP--EDPLNE--EAAELYKNDREEFEKKAREW  139 (140)
T ss_dssp             SBBGHGGGT------TTTC-TTS-HHHHHHHHHHHHHHSTCT--TSTSSH--HHHHHHHHCHHHHHHHHHHH
T ss_pred             ccchhhhhh------cccCCccc-ccccHHHHHHHHHhCCCC--CCcchH--HHHHHHHHCHHHHHHHHHHc
Confidence            999999997      35699988 999999999999999988  999987  78999999999999999875

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-34  Score=250.25  Aligned_cols=151  Identities=26%  Similarity=0.516  Sum_probs=139.0

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeec-----CCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYE-----NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e-----~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ||..++.||+.|-+.+.++.|-|+++.|..     .|+..|.|.|.|+.|||||||+|.+.+.||++||.+||++.|.++
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p   80 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP   80 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence            345679999999999999999999999843     368999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHH
Q 018254          125 GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV  204 (359)
Q Consensus       125 i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v  204 (359)
                      .+  |||||.+|.||||||+.     ..+|+|+. ||.|||++||.||.+||+  .+|++.  +|..+|.+++..|.++|
T Consensus        81 l~--HPNVypsgtVcLsiL~e-----~~~W~pai-tikqiL~gIqdLL~~Pn~--~~pAq~--eA~~~~~~~r~eYekrv  148 (158)
T KOG0424|consen   81 LF--HPNVYPSGTVCLSILNE-----EKDWRPAI-TIKQILLGIQDLLDTPNI--TSPAQT--EAYTIYCQDRAEYEKRV  148 (158)
T ss_pred             Cc--CCCcCCCCcEehhhhcc-----ccCCCchh-hHHHHHHHHHHHhcCCCC--CCchhh--HHHHHHhhCHHHHHHHH
Confidence            76  99999999999999982     23499999 999999999999999999  999998  78999999999999999


Q ss_pred             HHHHHHHH
Q 018254          205 FILSCKSM  212 (359)
Q Consensus       205 ~~~t~k~m  212 (359)
                      +.+++++.
T Consensus       149 r~qak~~a  156 (158)
T KOG0424|consen  149 RAQAKEYA  156 (158)
T ss_pred             HHHHHHhc
Confidence            99887653

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=9.5e-34  Score=246.20  Aligned_cols=139  Identities=31%  Similarity=0.596  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCC
Q 018254           56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYAN  135 (359)
Q Consensus        56 kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~  135 (359)
                      |||++|+++|+++++.|+++.+.++|+..|+++|.||++|||+||.|+|+|.||++||++||.|+|.|.++  ||||+.+
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~--HpnV~~~   79 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIY--HPNVDEN   79 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcc--cCCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999976  9999999


Q ss_pred             CceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       136 GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                      |.||+++|..      +.|+|++ +|.+||.+|+++|.+|++  ++|.|.  +|+.++.++.+.|+++|+.+
T Consensus        80 G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~--~aa~~~~~~~~~f~~~~~~~  140 (141)
T cd00195          80 GKICLSILKT------HGWSPAY-TLRTVLLSLQSLLNEPNP--SDPLNA--EAAKLYKENREEFKKKAREW  140 (141)
T ss_pred             CCCchhhcCC------CCcCCcC-cHHHHHHHHHHHHhCCCC--CCchhH--HHHHHHHHCHHHHHHHHHHh
Confidence            9999999972      3599999 899999999999998877  899887  78999999999999999865

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=3.5e-33  Score=243.72  Aligned_cols=143  Identities=31%  Similarity=0.600  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCC
Q 018254           56 KKIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYA  134 (359)
Q Consensus        56 kRL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~  134 (359)
                      +||++|++.|+++++.|+.|.+.++ |+..|+++|.||++|||+||.|.|+|.||++||+.||+|+|.|+++  |||||.
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~--Hp~i~~   78 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIY--HPNVDS   78 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCce--EeeECC
Confidence            5999999999999999999998876 9999999999999999999999999999999999999999999976  999999


Q ss_pred             CCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          135 NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       135 ~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      +|.||+++|.      .++|+|+. +|.+||.+|+++|.+|++  ++|.+.  +|+.+|.++...|+++|+.++.+.
T Consensus        79 ~G~icl~~l~------~~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~--eaa~~~~~~~~~f~~~~~~~~~k~  144 (145)
T smart00212       79 SGEICLDILK------QEKWSPAT-TLETVLLSIQSLLSEPNP--DSPLNA--DAATLYKKNREEFKKKAREWTKKY  144 (145)
T ss_pred             CCCEehhhcC------CCCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            9999999996      26899997 999999999999999888  999987  789999999999999999988764

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-33  Score=250.39  Aligned_cols=147  Identities=24%  Similarity=0.478  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHhcC---CCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           54 SHKKIMQEWKILEKHL---PESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~---p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      +.+||++|.+++..+.   -.||.+...++++...++.|.||+|||||||.|.+||.+|++||++||+|+|.|+||  ||
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw--HP   81 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW--HP   81 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee--cC
Confidence            7999999999999887   579999999999999999999999999999999999999999999999999999998  99


Q ss_pred             CcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          131 NLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       131 NVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||. .+|.|||++|+       +.|.++. ||..+|+|||+||..|+|  ++|..+.+  +..|.++++.|...++.|+.
T Consensus        82 nVSs~tGaICLDilk-------d~Wa~sl-TlrtvLislQalL~~pEp--~dPqDavv--a~qy~~n~~~F~~TAr~WT~  149 (200)
T KOG0418|consen   82 NVSSQTGAICLDILK-------DQWAASL-TLRTVLISLQALLCAPEP--KDPQDAVV--AEQYVDNYEMFYKTARYWTT  149 (200)
T ss_pred             CCCcccccchhhhhh-------cccchhh-hHHHHHHHHHHHHcCCCC--CChHHHHH--HHHHhhhHHHHHHHHHHHHH
Confidence            998 99999999998       8999998 999999999999999999  99998854  88999999999999998887


Q ss_pred             HHHHH
Q 018254          210 KSMTF  214 (359)
Q Consensus       210 k~m~~  214 (359)
                      .++-.
T Consensus       150 ~fA~~  154 (200)
T KOG0418|consen  150 EFAGG  154 (200)
T ss_pred             HHhCC
Confidence            75543

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.2e-32  Score=232.66  Aligned_cols=140  Identities=24%  Similarity=0.415  Sum_probs=132.1

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      ....|||++|+-.|.....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|.|.|+.|  |||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~--HPN  105 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCF--HPN  105 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecccc--CCC
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999966  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI  206 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~  206 (359)
                      |+-.|.|||+||.       +.|+..+ ++..||+|||+||-+||-  .+|+|.  .|+.+|. |..+|.+.+..
T Consensus       106 VD~~GnIcLDILk-------dKWSa~Y-dVrTILLSiQSLLGEPNn--~SPLNa--qAAelW~-d~~eykk~l~~  167 (175)
T KOG0421|consen  106 VDLSGNICLDILK-------DKWSAVY-DVRTILLSIQSLLGEPNN--SSPLNA--QAAELWS-DQEEYKKYLEA  167 (175)
T ss_pred             ccccccchHHHHH-------HHHHHHH-hHHHHHHHHHHHhCCCCC--CCcchh--HHHHHhc-CHHHHHHHHHH
Confidence            9999999999998       8999998 999999999999999988  999998  6788887 88999876643

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-29  Score=216.74  Aligned_cols=144  Identities=23%  Similarity=0.462  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCeE-EEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           54 SHKKIMQEWKILEKHLPESIF-VRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~-v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      +.+||++|+.+|+++....+. ++.++.+++.|.++|+ |.+-||..|.|.+.|.||.+||++||+++|.|.+|  ||||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiY--HpNV   79 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIY--HPNV   79 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeec--cCCC
Confidence            689999999999999887555 6788999999999999 89999999999999999999999999999999998  9999


Q ss_pred             CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      ++.|.||+.++.+      |+|.|.+ ++.|||.++.+|+.+|+|  ..|...  +.+.+|.+|...|.+++..++.+.
T Consensus        80 De~gqvClPiis~------EnWkP~T-~teqVlqaLi~liN~P~p--e~plr~--dlA~ey~~d~~kF~K~Aee~tkK~  147 (153)
T KOG0422|consen   80 DEKGQVCLPIISA------ENWKPAT-RTEQVLQALIALINDPEP--EHPLRI--DLAEEYIKDPKKFVKNAEEFTKKY  147 (153)
T ss_pred             CCCCceeeeeeec------ccccCcc-cHHHHHHHHHHHhcCCCc--cccchh--hHHHHHHHCHHHHHHhHHHHHHHh
Confidence            9999999999984      9999999 999999999999999999  999998  569999999999999999888774

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-27  Score=218.87  Aligned_cols=158  Identities=25%  Similarity=0.450  Sum_probs=126.9

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      ++.+.|||++||+.|.++++++|.++|.++|+.+||.+|.||+||||+||.|+..|.||++||++||.|++.|+--||-+
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt   82 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT   82 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999555655


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      |    -++|||+..    .|++.|+|++ ++..||.++.++|.+     ++|...+++.+   ..+.+.|.+..      
T Consensus        83 n----tRLCLSiSD----fHPdsWNP~W-sVStILtGLlSFM~e-----~~pTtGSI~tS---~~~kr~lA~~S------  139 (244)
T KOG0894|consen   83 N----TRLCLSISD----FHPDSWNPGW-SVSTILTGLLSFMTE-----DSPTTGSIETS---DQDKRMLAKSS------  139 (244)
T ss_pred             C----ceEEEeccc----cCcCcCCCcc-cHHHHHHHHHHHHhc-----CCCccCccccc---HHHHHHHHHhh------
Confidence            5    599999997    5789999999 899999999999998     55565555322   22233333222      


Q ss_pred             HHHHHHhCC--CCCcHHHHHHHHH
Q 018254          211 SMTFLLRNP--PKNFEGFVRSHFR  232 (359)
Q Consensus       211 ~m~~~l~~p--p~~Fe~~V~~hf~  232 (359)
                       ...-++++  ...|.++|+++-+
T Consensus       140 -laFN~kn~~F~~lFPE~Vee~nq  162 (244)
T KOG0894|consen  140 -LAFNLKNPKFCELFPEVVEEYNQ  162 (244)
T ss_pred             -hhhccCChHHHHHhHHHHHHHHH
Confidence             22222333  2358888887533

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.5e-28  Score=215.11  Aligned_cols=147  Identities=29%  Similarity=0.555  Sum_probs=139.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccc
Q 018254           48 DHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLR  127 (359)
Q Consensus        48 ~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~r  127 (359)
                      ..+.+...|.|.+|++.|..++|+||.|.+.++|+....+.|.||.||||++|+|+..+.+..|||++||+-+|+|+|| 
T Consensus         5 enlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIF-   83 (223)
T KOG0423|consen    5 ENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIF-   83 (223)
T ss_pred             cCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeec-
Confidence            4566789999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             cCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          128 LNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       128 fHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                       ||||-.+|.||...|.       .+|+|+. .|..||+.|..||..|+|  .+++|+  +|..+..++..+|.+.+|.+
T Consensus        84 -HPNVaaNGEICVNtLK-------kDW~p~L-GirHvLltikCLLI~PnP--ESALNE--eAGkmLLEnYdeYa~rARl~  150 (223)
T KOG0423|consen   84 -HPNVAANGEICVNTLK-------KDWNPSL-GIRHVLLTIKCLLIEPNP--ESALNE--EAGKMLLENYDEYARRARLY  150 (223)
T ss_pred             -cCCcccCceehhhhhh-------cccCccc-chhhHhhhhheeeecCCh--HHHHhH--HHHHHHHHhHHHHHHHHHHH
Confidence             9999999999999998       7999999 999999999999999999  999999  78899999999999888655


Q ss_pred             H
Q 018254          208 S  208 (359)
Q Consensus       208 t  208 (359)
                      +
T Consensus       151 T  151 (223)
T KOG0423|consen  151 T  151 (223)
T ss_pred             H
Confidence            4

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.8e-26  Score=203.61  Aligned_cols=141  Identities=21%  Similarity=0.444  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEe--ecCCcce--EEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccc
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRV--YENRIDL--LRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLR  127 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~--~e~~l~~--w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~r  127 (359)
                      |.++-||++|+.+|  ++|+++....  ..++.+.  ++.+|. |+.+.|.||.|.|.+.+|+.||+.||+|.+.|++| 
T Consensus        27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~-  102 (184)
T KOG0420|consen   27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY-  102 (184)
T ss_pred             cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc-
Confidence            55666776666555  7888777432  2344444  788887 99999999999999999999999999999999998 


Q ss_pred             cCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          128 LNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       128 fHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                       ||||+.+|.|||+||.       ++|+|.. +|.+|+.+++.||.+|++  ++|+|-  +|+..+..+++.|+.+||..
T Consensus       103 -HPNId~~GnVCLnILR-------edW~P~l-nL~sIi~GL~~LF~epn~--eDpLN~--eAA~~l~~n~e~F~~~Vr~~  169 (184)
T KOG0420|consen  103 -HPNIDLDGNVCLNILR-------EDWRPVL-NLNSIIYGLQFLFLEPNP--EDPLNK--EAAAVLKSNREGFENNVRRA  169 (184)
T ss_pred             -cCCcCCcchHHHHHHH-------hcCcccc-chHHHHHHHHHHhccCCC--cccccH--HHHHHHHhCHHHHHHHHHHH
Confidence             9999999999999998       8999998 999999999999999997  999998  78999999999999998754


Q ss_pred             HH
Q 018254          208 SC  209 (359)
Q Consensus       208 t~  209 (359)
                      ..
T Consensus       170 m~  171 (184)
T KOG0420|consen  170 MS  171 (184)
T ss_pred             Hh
Confidence            43

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3e-25  Score=196.77  Aligned_cols=143  Identities=21%  Similarity=0.442  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      .-|||-.|...|..+   +-.|...++.+..+.+.+.||.+|||+||++++.|.+|++||++.|.|.|.++||  ||||+
T Consensus         4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIf--HPNID   78 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIF--HPNID   78 (189)
T ss_pred             cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeecc--CCCch
Confidence            357888888777653   4468889999999999999999999999999999999999999999999999987  99999


Q ss_pred             -CCCceeeccccccCCCCCCCcccCcccHHHHHHHH-HHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          134 -ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI-QALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       134 -~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sI-q~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                       .+|.|||++++       ..|+|.+ .+..|+.++ =.||..|||  .+|+|.  +|+.++..+++.|+++|+.+..++
T Consensus        79 e~SGsVCLDViN-------QtWSp~y-DL~NIfetfLPQLL~YPNp--~DPLN~--eAAal~l~~~~~Y~~~v~eY~~kY  146 (189)
T KOG0416|consen   79 EASGSVCLDVIN-------QTWSPLY-DLVNIFETFLPQLLRYPNP--SDPLNG--EAAALYLRDPEEYEEKVKEYIKKY  146 (189)
T ss_pred             hccCccHHHHHh-------hhhhHHH-HHHHHHHHHhHHHhcCCCC--CCCccc--HHHHHHhcCHHHHHHHHHHHHHHh
Confidence             99999999998       7899999 899998876 589999999  999999  789999999999999999888776


Q ss_pred             HH
Q 018254          212 MT  213 (359)
Q Consensus       212 m~  213 (359)
                      +.
T Consensus       147 A~  148 (189)
T KOG0416|consen  147 AT  148 (189)
T ss_pred             cC
Confidence            54

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.6e-25  Score=188.96  Aligned_cols=122  Identities=23%  Similarity=0.507  Sum_probs=114.1

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecc
Q 018254           44 KNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS  123 (359)
Q Consensus        44 ~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T  123 (359)
                      .++++.++..+.+|||+|+.+|+.++|.|+.++ ..+++..|.+-+.|.+||.|+|-.|.+.+.||+.||+..|.|.|..
T Consensus         6 ~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~   84 (161)
T KOG0427|consen    6 APSRKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVG   84 (161)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEec
Confidence            355677788899999999999999999999999 4578999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccC
Q 018254          124 FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE  175 (359)
Q Consensus       124 ~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p  175 (359)
                      ++ ..||+||.+|.|||+||.       +.|+|+. ++.+|.+||.+||...
T Consensus        85 ~~-P~HPHiYSNGHICL~iL~-------d~WsPAm-sv~SvClSIlSMLSSs  127 (161)
T KOG0427|consen   85 PA-PLHPHIYSNGHICLDILY-------DSWSPAM-SVQSVCLSILSMLSSS  127 (161)
T ss_pred             CC-CCCCceecCCeEEEEeec-------ccCCcch-hhHHHHHHHHHHHccC
Confidence            96 689999999999999997       8999998 9999999999999864

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.5e-20  Score=175.29  Aligned_cols=142  Identities=21%  Similarity=0.399  Sum_probs=116.4

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      ...++|||++|.++|+ ++.+-....+.|+|+++|+.+|.||.||-|+||+|+.+|.||.|||++||.+..+|+    |.
T Consensus         9 KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp----NG   83 (314)
T KOG0428|consen    9 KNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP----NG   83 (314)
T ss_pred             cCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC----CC
Confidence            3568999999999998 677778899999999999999999999999999999999999999999999999998    55


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhH-HHcHHHHHHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIW-EKKSTAYNEDVFILSC  209 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~-~~~~~~Yne~v~~~t~  209 (359)
                      .+--+-+|||||.+    .|+|.|.|++ +|...|+.|.++|-.      .|.-+  -|+-.| .+.++....+.+.+-|
T Consensus        84 RFE~nkKiCLSISg----yHPEtWqPSW-SiRTALlAlIgFmPt------~p~GA--lGSlDYpp~ERr~LAkkS~e~~c  150 (314)
T KOG0428|consen   84 RFEVNKKICLSISG----YHPETWQPSW-SIRTALLALIGFMPT------KPEGA--LGSLDYPPEERRALAKKSQEFCC  150 (314)
T ss_pred             ceeeCceEEEEecC----CCccccCcch-hHHHHHHHHHccccC------CCCCc--cccCcCCHHHHHHHHHhhcccCc
Confidence            55667799999985    7899999999 899999999999832      33222  133333 3445555555665555


Q ss_pred             H
Q 018254          210 K  210 (359)
Q Consensus       210 k  210 (359)
                      +
T Consensus       151 k  151 (314)
T KOG0428|consen  151 K  151 (314)
T ss_pred             c
Confidence            4

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.8e-18  Score=156.45  Aligned_cols=154  Identities=19%  Similarity=0.325  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCC--CCCeeeecccccccCCCcC-
Q 018254           57 KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN--HPPMVHYRSFGLRLNPNLY-  133 (359)
Q Consensus        57 RL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~--~PP~V~f~T~i~rfHPNVy-  133 (359)
                      .|..|+..+.+..-+||||.|+-.+-.+|.++|++-. +.|.||+|+|.|.+|++||.  .-|+|.|.+.++  ||.|. 
T Consensus        23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vf--HP~icp   99 (258)
T KOG0429|consen   23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVF--HPLICP   99 (258)
T ss_pred             HHHHHHHHHHhccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeecccc--ccccCC
Confidence            4566666677788899999999999999999999755 56999999999999999995  679999999976  99998 


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT  213 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~  213 (359)
                      .++.+|++-.-       ..|.-..+.|++||+.||.++.+|+...++-.|.  +|+.+|++++..|.++|+.++.-+-.
T Consensus       100 ~skeLdl~raf-------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~--eAa~l~~k~r~ef~~rvqe~vk~sr~  170 (258)
T KOG0429|consen  100 KSKELDLNRAF-------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINP--EAAVLYKKHRDEFRERVQECVKASRS  170 (258)
T ss_pred             CccceeHhhhh-------hhhhccccHHHHHHHHHHHHhcCcccchhhhcCh--HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            88999998765       3499998999999999999999999855444454  89999999999999999998866555


Q ss_pred             HHHhCCCCC
Q 018254          214 FLLRNPPKN  222 (359)
Q Consensus       214 ~~l~~pp~~  222 (359)
                      .++..||..
T Consensus       171 ~iyD~ppte  179 (258)
T KOG0429|consen  171 MIYDEPPTE  179 (258)
T ss_pred             HhcCCCCCC
Confidence            567788876

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=6.9e-10  Score=95.87  Aligned_cols=111  Identities=17%  Similarity=0.304  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeec--CC--cceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           56 KKIMQEWKILEKHLPESIFVRVYE--NR--IDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        56 kRL~kEl~~L~k~~p~gI~v~~~e--~~--l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      -||.+|+..-++-.-++..-.-.+  +|  +..|-+.|.||+.|+||+-+|.+.|.+.++||..||.|+|.|++.  -+-
T Consensus         8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin--m~g   85 (138)
T KOG0896|consen    8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN--MNG   85 (138)
T ss_pred             hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee--ecc
Confidence            357788777666555554433333  33  457999999999999999999999999999999999999999974  233


Q ss_pred             cC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc
Q 018254          132 LY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN  174 (359)
Q Consensus       132 Vy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~  174 (359)
                      +. .+|.|--..+.+     -++|.-++ ++..||.++.-+++.
T Consensus        86 vn~~~g~Vd~~~i~~-----L~~W~~~y-~~~~vl~~lr~~m~~  123 (138)
T KOG0896|consen   86 VNSSNGVVDPRDITV-----LARWQRSY-SIKMVLGQLRKEMMS  123 (138)
T ss_pred             cccCCCccCccccch-----hhcccccc-hhhHHHHhhhHHHHH
Confidence            43 666664322221     16899998 899999999876654

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.04  E-value=1.7e-05  Score=68.13  Aligned_cols=107  Identities=25%  Similarity=0.477  Sum_probs=65.6

Q ss_pred             HHHHHHHhcCCCCeEEE----eecCCcceEEEEEecCCCCCcCCCeE--EEEEeCCCCCCCCCCeeeecccc---cccCC
Q 018254           60 QEWKILEKHLPESIFVR----VYENRIDLLRAVIVGTAGTPYHDGLF--FFDLAFPADYPNHPPMVHYRSFG---LRLNP  130 (359)
Q Consensus        60 kEl~~L~k~~p~gI~v~----~~e~~l~~w~~~I~GP~gTPYegG~F--~f~I~fP~dYP~~PP~V~f~T~i---~rfHP  130 (359)
                      +|+..+.+.-| .+..+    ..++-....-..+.|----.|.|..|  -+.|.+|.+||..||.|......   .+-+.
T Consensus         3 ~d~~~~l~~y~-~L~p~~~~ft~~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~   81 (121)
T PF05743_consen    3 NDVLSVLQNYP-SLRPRTDTFTFNDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSH   81 (121)
T ss_dssp             HHHHHHHHHST-TEEEEEEEEESTTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCC
T ss_pred             HHHHHHHHHCC-CCcEeeeeeEcCCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCC
Confidence            45555555544 33322    22332222223333322235888887  57788999999999999776542   23355


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccC
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE  175 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p  175 (359)
                      +|+.+|+|.+..|.        +|++..|++.+++..++..|...
T Consensus        82 ~Vd~~G~v~~pyL~--------~W~~~~s~L~~lv~~l~~~F~~~  118 (121)
T PF05743_consen   82 HVDSNGRVYLPYLQ--------NWNPPSSNLVDLVQELQAVFSEE  118 (121)
T ss_dssp             CB-TTSBB-SHHHH--------T--TTTS-HHHHHHHHHHCCCHS
T ss_pred             eECCCCCEeCchhc--------cCCCCCCCHHHHHHHHHHHHhHc
Confidence            99999999999995        78886679999999999888653

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.04  E-value=9.3e-06  Score=70.44  Aligned_cols=69  Identities=29%  Similarity=0.619  Sum_probs=60.5

Q ss_pred             CCCeEEEEEeCCCCCCCCCCeeeecccc-cccCCCcCCCCceee---ccccccCCCCCCCcccCcccHHHHHHHHHHHhc
Q 018254           98 HDGLFFFDLAFPADYPNHPPMVHYRSFG-LRLNPNLYANGRVCL---SLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL  173 (359)
Q Consensus        98 egG~F~f~I~fP~dYP~~PP~V~f~T~i-~rfHPNVy~~GkVCL---slL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~  173 (359)
                      .|+.|.++|.||++||..||.|....+. +.+=|+|+.+|.+|+   ++.-       +.|+|.. .+.++|.+++.+|.
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------D~~~P~~-~~~~~l~~a~~lL~  105 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------DPWDPEG-IIADCLERAIRLLE  105 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------CccCHHH-HHHHHHHHHHHHHH
Confidence            6899999999999999999999998654 236899999999999   5553       8999997 89999999999997


Q ss_pred             c
Q 018254          174 N  174 (359)
Q Consensus       174 ~  174 (359)
                      +
T Consensus       106 ~  106 (133)
T PF14461_consen  106 D  106 (133)
T ss_pred             H
Confidence            3

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=97.79  E-value=2.5e-05  Score=68.65  Aligned_cols=86  Identities=17%  Similarity=0.343  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCe----------EEEEEeCCCCCCCCCCeeee
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGL----------FFFDLAFPADYPNHPPMVHY  121 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~----------F~f~I~fP~dYP~~PP~V~f  121 (359)
                      ..|..||..|+..|.+      ||....++-..|.-+=.-++||-|.|-+          |.|.+.+|..||..||.+..
T Consensus        23 ~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l   96 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL   96 (161)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred             HHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence            6799999999999855      2222222223333333345555555543          44556679999999999987


Q ss_pred             cccccccCCCcCCCCceeecccc
Q 018254          122 RSFGLRLNPNLYANGRVCLSLLN  144 (359)
Q Consensus       122 ~T~i~rfHPNVy~~GkVCLslL~  144 (359)
                      -.-. .--.-.|..|+|||++-.
T Consensus        97 PeLd-GKTaKMYRGGkIClt~HF  118 (161)
T PF08694_consen   97 PELD-GKTAKMYRGGKICLTDHF  118 (161)
T ss_dssp             GGGT-TT-SSBCCCCBB---TTH
T ss_pred             cccC-CchhhhhcCceEeeeccc
Confidence            6532 125678999999998753

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00012  Score=62.09  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=53.1

Q ss_pred             EEEEeCCCCCCCCCCeeeecccccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCC
Q 018254          103 FFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP  177 (359)
Q Consensus       103 ~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~P  177 (359)
                      .+.+.|+++||+.||.++-..+.. -..-+-.+|.||+.||.+      ++|+..+ +|..++++|-+.+-.-.-
T Consensus        14 ll~~~f~~~fp~~ppf~rvv~p~~-~~Gyvl~ggAIcmellt~------qgwssay-~Ve~vi~qiaatlVkG~~   80 (122)
T KOG0897|consen   14 LLLDIFDDNFPFMPPFPRVVKPLE-DEGYVLEGGAICMELLTK------QGWSSAY-EVERVIMQIAATLVKGGA   80 (122)
T ss_pred             EeeeecccCCCCCCCcceeeeecc-cCCEEecchhhHHHHHcc------ccccchh-hHHHHHHHHHHHhhccce
Confidence            456789999999999998776532 122234899999999984      9999987 999999999998876443

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.21  E-value=0.0012  Score=65.47  Aligned_cols=84  Identities=21%  Similarity=0.488  Sum_probs=68.0

Q ss_pred             EecCCCCCcCCCeEE--EEEeCCCCCCCCCCeeeecccc---cccCCCcCCCCceeeccccccCCCCCCCcccCcccHHH
Q 018254           89 IVGTAGTPYHDGLFF--FDLAFPADYPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQ  163 (359)
Q Consensus        89 I~GP~gTPYegG~F~--f~I~fP~dYP~~PP~V~f~T~i---~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~q  163 (359)
                      +.|---+||.|.+|-  +.|.+++.||..||.|....+-   ...|-+|+.+|+|.|..|.        .|.|..|++..
T Consensus        55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------~W~~pssdLv~  126 (365)
T KOG2391|consen   55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------NWDPPSSDLVG  126 (365)
T ss_pred             ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------cCCCccchHHH
Confidence            344444688888874  6788999999999999776542   2338999999999999996        79998889999


Q ss_pred             HHHHHHHHhccCCCCCC
Q 018254          164 VLVSIQALVLNEKPYFN  180 (359)
Q Consensus       164 VL~sIq~Ll~~p~Py~n  180 (359)
                      ++.-+.+.|..+.|.|.
T Consensus       127 Liq~l~a~f~~~pP~ys  143 (365)
T KOG2391|consen  127 LIQELIAAFSEDPPVYS  143 (365)
T ss_pred             HHHHHHHHhcCCCcccc
Confidence            99999999988777654

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.0018  Score=56.40  Aligned_cols=85  Identities=18%  Similarity=0.364  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCe--------EEEEE--eCCCCCCCCCCeeee
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGL--------FFFDL--AFPADYPNHPPMVHY  121 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~--------F~f~I--~fP~dYP~~PP~V~f  121 (359)
                      ..|..||..|++.|..      +|.-..++-..|.-+-.-++||-|-|.+        |.|||  .+|-.||...|.+..
T Consensus        26 ~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial   99 (167)
T KOG3357|consen   26 DLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL   99 (167)
T ss_pred             hHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence            5699999999999854      2333333444555445668888888765        44554  559999999999875


Q ss_pred             cccccccCCCcCCCCceeeccc
Q 018254          122 RSFGLRLNPNLYANGRVCLSLL  143 (359)
Q Consensus       122 ~T~i~rfHPNVy~~GkVCLslL  143 (359)
                      ..-. .-.--.|..|+|||+.-
T Consensus       100 peld-gktakmyrggkiclt~h  120 (167)
T KOG3357|consen  100 PELD-GKTAKMYRGGKICLTDH  120 (167)
T ss_pred             cccC-chhhhhhcCceEeeccc
Confidence            4321 11345679999999643

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=96.04  E-value=0.061  Score=46.56  Aligned_cols=97  Identities=15%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             CeEEEeecCCcceEEEEEec--CCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCCCce--eeccccc--
Q 018254           72 SIFVRVYENRIDLLRAVIVG--TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRV--CLSLLNT--  145 (359)
Q Consensus        72 gI~v~~~e~~l~~w~~~I~G--P~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~GkV--CLslL~t--  145 (359)
                      |+......+.-..|-+ |.|  .+.+.|....-.+-|.+|+.||..+|.+.|..+.+  ..  -..|.|  |-+...+  
T Consensus        13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L--~~--~~G~~iP~~~~~~~~~~   87 (122)
T PF14462_consen   13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPL--KL--ADGGPIPNAAEVTQTFD   87 (122)
T ss_pred             CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCce--Ec--cCCCcCCchhcchhhcC
Confidence            4444443333333433 544  44556999999999999999999999887766543  11  022344  5544443  


Q ss_pred             ---cC--CCCCCCcccCcccHHHHHHHHHHHhc
Q 018254          146 ---WT--GKKSEKWNPDESTVLQVLVSIQALVL  173 (359)
Q Consensus       146 ---w~--G~~~e~WsP~~stI~qVL~sIq~Ll~  173 (359)
                         |.  +.|...|+|...+|.+.|.-|...|.
T Consensus        88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence               32  35688999999899999999987764

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=95.13  E-value=0.041  Score=44.81  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEe--cCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccc
Q 018254           56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIV--GTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFG  125 (359)
Q Consensus        56 kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~--GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i  125 (359)
                      .+...|+..|+.--++.+ +.....+...+.+.+.  ....+.-....+.+.|.||++||..||.|...+..
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            456788888887655544 2222333445556662  23344444568999999999999999999887763

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.01  E-value=0.25  Score=39.85  Aligned_cols=27  Identities=15%  Similarity=0.386  Sum_probs=22.7

Q ss_pred             CCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           98 HDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        98 egG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ..-.+.+.|.||++||..+|.|.+.+.
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEECC
Confidence            345688999999999999999987764

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=89.08  E-value=0.57  Score=42.39  Aligned_cols=64  Identities=22%  Similarity=0.341  Sum_probs=49.8

Q ss_pred             EEEeCCCCCCCCCCeeeecccccccC-CCcCCC-----CceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc
Q 018254          104 FDLAFPADYPNHPPMVHYRSFGLRLN-PNLYAN-----GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN  174 (359)
Q Consensus       104 f~I~fP~dYP~~PP~V~f~T~i~rfH-PNVy~~-----GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~  174 (359)
                      +.|.|+.+||..+|.|.+.-..|.-+ |+++..     ..+||..-. |     ..|.+.. ++..+|..|..-|..
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~-~-----~e~~~~~-g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP-W-----SEWRPSW-GPEGFLDRLFDWLRD  126 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC-H-----HHhhhcc-CHHHHHHHHHHHHHH
Confidence            56899999999999888887766664 888866     678996554 3     6788887 888888888776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		2e-39
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		2e-14
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		3e-14
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		8e-14
1jas_A	152	Hsubc2b Length = 152		8e-14
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		8e-14
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		2e-12
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		1e-11
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-11
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		4e-11
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		6e-11
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		1e-10
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-10
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		3e-10
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-10
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-10
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-10
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		3e-10
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		3e-10
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		3e-10
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		4e-10
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		4e-10
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		4e-10
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		4e-10
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		5e-10
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-10
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		5e-10
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-09
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		1e-09
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		2e-09
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		2e-09
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		2e-09
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-09
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		3e-09
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		4e-09
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		5e-09
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		6e-09
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		6e-09
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		6e-09
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		7e-09
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		7e-09
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		7e-09
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-09
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		7e-09
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-08
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		1e-08
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		1e-08
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		1e-08
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-08
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-08
3jvz_A	146	E2~ubiquitin-Hect Length = 146		2e-08
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-08
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-08
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		5e-08
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		5e-08
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		6e-08
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		6e-08
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		6e-08
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		6e-08
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		7e-08
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		8e-08
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		1e-07
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-07
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-07
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		2e-07
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		3e-07
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		3e-07
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		3e-07
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-07
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-06
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		2e-06
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		3e-06
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		3e-06
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-06
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		3e-06
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		3e-06
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		4e-06
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		4e-06
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		5e-06
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		7e-06
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		1e-05
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-05
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		6e-05
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		8e-05
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-04
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		4e-04
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		6e-04
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		6e-04
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		7e-04

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 136/248 (54%), Gaps = 19/248 (7%)
Query: 16  IEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQE----WK 63
           + + + F  F+ VS+  D        +HY +     KN  D   A   +++ QE      
Sbjct: 34  VXKKLQFDTFEXVSEDEDGKLGFKVNYHYXSQV---KNANDANSAARARRLAQEAVTLST 90
Query: 64  ILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
            L      S+FVR  E R+D+ + +I G A TPY +G F FD+ FP DYP+ PP+V+  +
Sbjct: 91  SLPLSSSSSVFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150
Query: 124 FG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFN 180
            G   +R NPNLY +G+VCLS+LNTW G+  EKWNP  S+ LQVLVS+Q+L+L  +PYFN
Sbjct: 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFN 210
Query: 181 EPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTF-LLRNPPKNFEGFVRSHFRERGHVIL 239
           EPG+    G     + S  Y+ ++   + K      +RNP   F+  +  HF  +   I 
Sbjct: 211 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFYLKRVEIX 270
Query: 240 SACKSYLS 247
           + C+ +++
Sbjct: 271 AQCEEWIA 278

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + K++M+++K L++  P  I     +N I L  AVI G   TP+  G F   L F  DYP
Sbjct: 5   ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           N PP V + S     +PN+YA+G +CL +L         +W+P    V  +L SIQ+L+ 
Sbjct: 65  NKPPTVRFVS--RMFHPNIYADGSICLDILQN-------QWSP-IYDVAAILTSIQSLLC 114
Query: 174 NEKPYFNEPGHG 185
           +  P  N P + 
Sbjct: 115 DPNP--NSPANS 124

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 49  HFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
           H    S +++M+++K L++  P  +     E+ I    A+I G   TP+ DG F   L F
Sbjct: 3   HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 109 PADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
             +YPN PP V + S     +PN+YA+G +CL +L         +W+P    V  +L SI
Sbjct: 63  TEEYPNKPPTVKFIS--KMFHPNVYADGSICLDILQN-------RWSPTYD-VAAILTSI 112
Query: 169 QALVLNEKPYFNEPGHGM 186
           Q+L+  ++P  N P + +
Sbjct: 113 QSLL--DEPNPNSPANSL 128

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + +++M+++K +++  P  +      + + +  A+I+G A TPY DG F   L F  +YP
Sbjct: 5   ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           N PP  H +      +PN+YANG +CL +L         +W P    V  +L SIQ+L  
Sbjct: 65  NKPP--HVKFLSEMFHPNVYANGEICLDILQN-------RWTP-TYDVASILTSIQSL-- 112
Query: 174 NEKPYFNEPG 183
                FN+P 
Sbjct: 113 -----FNDPN 117

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + +++M+++K L++  P  +     EN I    AVI G  GTP+ DG F   + F  +YP
Sbjct: 5   ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           N PP V + S     +PN+YA+G +CL +L         +W+P    V  +L SIQ+L+ 
Sbjct: 65  NKPPTVRFLS--KMFHPNVYADGSICLDILQN-------RWSP-TYDVSSILTSIQSLL- 113
Query: 174 NEKPYFNEPGHG 185
            ++P  N P + 
Sbjct: 114 -DEPNPNSPANS 124

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           S +++M+++K L++  P  +     E+ I    A+I G   TP+ DG F   L F  +YP
Sbjct: 5   SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           N PP V + S     +PN+YA+G +CL +L         +W+P    V  +L SIQ+L+ 
Sbjct: 65  NKPPTVKFIS--KMFHPNVYADGSICLDILQN-------RWSP-TYDVAAILTSIQSLL- 113
Query: 174 NEKPYFNEPGHGM 186
            ++P  N P + +
Sbjct: 114 -DEPNPNSPANSL 125

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 53  GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
            S K+I +E   LE+  P S       + +   +A I+G A +PY  G+FF  + FP DY
Sbjct: 2   SSSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDY 61
Query: 113 PNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           P  PP +   SF  ++ +PN+ ANG +CL +L        ++W+P   T+ +VL+SI +L
Sbjct: 62  PFKPPKI---SFTTKIYHPNINANGNICLDILK-------DQWSP-ALTLSKVLLSICSL 110
Query: 172 VLNEKP 177
           + +  P
Sbjct: 111 LTDANP 116

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 54  SHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           + K++++E + L K  P  I      EN I +   +I G   TPY DG+F   L FP DY
Sbjct: 5   AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKS------EKWNPDESTVLQVLV 166
           P  PP + +      L+PN+Y NG VC+S+L++     +      E+W+P +S V ++L+
Sbjct: 65  PLSPPKLTFTPS--ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQS-VEKILL 121
Query: 167 SIQALV 172
           S+ +++
Sbjct: 122 SVMSML 127

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L K  P S       + +   +A I+G A +PY  G+FF  + FP DYP  
Sbjct: 4   KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V+   F  R+ +PN+ +NG +CL +L        ++W+P   T+ +VL+SI +L+ +
Sbjct: 64  PPKVN---FTTRIYHPNINSNGSICLDILR-------DQWSP-ALTISKVLLSISSLLTD 112
Query: 175 EKP 177
             P
Sbjct: 113 PNP 115

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E + L++  P         + +   +A I+G + +PY  G+FF  + FP DYP  
Sbjct: 9   KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  ++ +PN+ +NG +CL +L +       +W+P   TV +VL+SI +L+ +
Sbjct: 69  PPKV---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICSLLCD 117
Query: 175 EKP 177
             P
Sbjct: 118 PNP 120

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 53  GSH---KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
           GSH   K+I +E + L +  P         + +   +A I+G   +PY  G+FF  + FP
Sbjct: 1   GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFP 60
Query: 110 ADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
            DYP  PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI
Sbjct: 61  TDYPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSI 109
Query: 169 QALVLNEKP 177
            +L+ +  P
Sbjct: 110 CSLLCDPNP 118

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 53  GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           G+ K+I +E   L K  P +       + +   +A I+G   +PY  G+FF ++ FP+DY
Sbjct: 21  GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDY 80
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
           P  PP V++ +     +PN+ + G +CL +L        ++W+P   T+ +VL+SI +L+
Sbjct: 81  PFKPPKVNFTT--KIYHPNINSQGAICLDIL-------KDQWSP-ALTISKVLLSISSLL 130
Query: 173 LNEKP 177
            +  P
Sbjct: 131 TDPNP 135

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A + K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP D
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +
Sbjct: 62  YPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
           L+ +  P
Sbjct: 111 LLCDPNP 117

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 9   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 69  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 117
Query: 175 EKP 177
             P
Sbjct: 118 PNP 120

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 66  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 175 EKP 177
             P
Sbjct: 115 PNP 117

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 51  PAGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
           P GS   K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + F
Sbjct: 15  PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 74
Query: 109 PADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
           P DYP  PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+S
Sbjct: 75  PTDYPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLS 123
Query: 168 IQALVLNEKP 177
           I +L+ +  P
Sbjct: 124 ICSLLCDPNP 133

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 13/152 (8%)
Query: 46  GRDHFPAGSH-KKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFF 103
           G   F AG+  K++M E+K L  + PE I    + E       A+I+G   T +  G+F 
Sbjct: 1   GGSEFMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFP 60
Query: 104 FDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPD 157
             L+FP DYP  PP + +       +PN+Y +GRVC+S+L+            +E+W+P 
Sbjct: 61  AILSFPLDYPLSPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPV 118
Query: 158 ESTVLQVLVSIQALVL--NEKPYFNEPGHGMW 187
           +S V ++L+S+ +++   N++   N     MW
Sbjct: 119 QS-VEKILLSVVSMLAEPNDESGANVDASKMW 149

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 12  KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 72  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 120
Query: 175 EKP 177
             P
Sbjct: 121 PNP 123

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 6   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 66  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 175 EKP 177
             P
Sbjct: 115 PNP 117

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A + K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP D
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP V   +F  R+ +PN+ +NG +CL +L +       +W P   T+ +VL+SI +
Sbjct: 62  YPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWGP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
           L+ +  P
Sbjct: 111 LLCDPNP 117

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 3   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 63  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 111
Query: 175 EKP 177
             P
Sbjct: 112 PNP 114

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 14  KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 74  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 122
Query: 175 EKP 177
             P
Sbjct: 123 PNP 125

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 14  KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 74  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 122
Query: 175 EKP 177
             P
Sbjct: 123 PNP 125

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 64  PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 175 EKP 177
             P
Sbjct: 113 PNP 115

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 12/148 (8%)
Query: 49  HFPAGSHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLA 107
           H    + K++M E+K L  + PE I    + E       A+I+G   T +  G+F   L+
Sbjct: 3   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 108 FPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTV 161
           FP DYP  PP + +       +PN+Y +GRVC+S+L+            +E+W+P +S V
Sbjct: 63  FPLDYPLSPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS-V 119
Query: 162 LQVLVSIQALVL--NEKPYFNEPGHGMW 187
            ++L+S+ +++   N++   N     MW
Sbjct: 120 EKILLSVVSMLAEPNDESGANVDASKMW 147

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A + K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP D
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP V   +F  R+ +PN+ +NG +CL  L +       +W+P   T+ +VL+SI +
Sbjct: 62  YPFKPPKV---AFTTRIYHPNINSNGSICLDALRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
           L+ +  P
Sbjct: 111 LLCDPNP 117

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 12/148 (8%)
Query: 49  HFPAGSHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLA 107
           H    + K++M E+K L  + PE I    + E       A+I+G   T +  G+F   L+
Sbjct: 2   HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 108 FPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTV 161
           FP DYP  PP + +       +PN+Y +GRVC+S+L+            +E+W+P +S V
Sbjct: 62  FPLDYPLSPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS-V 118
Query: 162 LQVLVSIQALVL--NEKPYFNEPGHGMW 187
            ++L+S+ +++   N++   N     MW
Sbjct: 119 EKILLSVVSMLAEPNDESGANVDASKMW 146

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A + K+I +E   L +  P         + +   +A  +G   +PY  G+FF  + FP D
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP V   +F  R+ +PN+ +NG +CL +L +       +W+P   T+ +VL+SI +
Sbjct: 62  YPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
           L+ +  P
Sbjct: 111 LLCDPNP 117

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 56  KKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
           K++M E+K L  + PE I    + E       A+I+G   T +  G+F   L+FP DYP 
Sbjct: 6   KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 115 HPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTVLQVLVSI 168
            PP + +       +PN+Y +GRVC+S+L+            +E+W+P +S V ++L+S+
Sbjct: 66  SPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS-VEKILLSV 122
Query: 169 QALVL--NEKPYFNEPGHGMW 187
            +++   N++   N     MW
Sbjct: 123 VSMLAEPNDESGANVDASKMW 143

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A + ++I +E + +++  P +       + I    A I G   +PY  GLFF D+ FP D
Sbjct: 3   AMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVD 62
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V + +     +PN+  NG +CL +L        ++W+P   T+ +VL+SI +L
Sbjct: 63  YPFKAPRVTFMT--KVYHPNINKNGVICLDILK-------DQWSP-ALTLSRVLLSISSL 112
Query: 172 VLNEKP 177
           + +  P
Sbjct: 113 LTDPNP 118

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A + K+I +E   L++  P         + +   +A I+G   + Y  G+FF  + FP D
Sbjct: 2   AMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP +   +F  ++ +PN+ +NG +CL +L +       +W+P   TV +VL+SI +
Sbjct: 62  YPFKPPKI---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICS 110
Query: 171 LVLNEKP 177
           L+ +  P
Sbjct: 111 LLCDPNP 117

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 18/132 (13%)
Query: 53  GSH------KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDL 106
           GSH      K+I +E   L++  P         + +   +A I+G   + Y  G+FF  +
Sbjct: 1   GSHMLEMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTV 60
Query: 107 AFPADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVL 165
            FP DYP  PP +   +F  ++ +PN+ +NG +CL +L +       +W+P   TV +VL
Sbjct: 61  HFPTDYPFKPPKI---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVL 109
Query: 166 VSIQALVLNEKP 177
           +SI +L+ +  P
Sbjct: 110 LSICSLLCDPNP 121

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 51  PAGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
           P GS   K+I +E   L++  P         + +   +A I+G   + Y  G+FF  + F
Sbjct: 15  PRGSMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHF 74
Query: 109 PADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
           P DYP  PP +   +F  ++ +PN+ +NG +CL +L +       +W+P   TV +VL+S
Sbjct: 75  PTDYPFKPPKI---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLS 123
Query: 168 IQALVLNEKP 177
           I +L+ +  P
Sbjct: 124 ICSLLCDPNP 133

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A + K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP D
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP V   +F  R+ +PN+ +NG + L +L +       +W+P   T+ +VL+SI +
Sbjct: 62  YPFKPPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
           L+ +  P
Sbjct: 111 LLCDPNP 117

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 57  KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
           ++ +E  +L    P  I     ++++D LRA I+G A TPY  G+F  ++  P  YP  P
Sbjct: 8   RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 117 PMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEK 176
           P + +       +PN+ + GR+CL +L          W P    +  VL SIQ L+    
Sbjct: 68  PQIRF--LTPIYHPNIDSAGRICLDVLKL---PPKGAWRP-SLNIATVLTSIQLLMSEPN 121
Query: 177 P 177
           P
Sbjct: 122 P 122

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 52  AGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
           AGS   K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP
Sbjct: 1   AGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 60
Query: 110 ADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
            DYP  PP V   +F  R+ +PN+ +NG + L +L +       +W+P   T+ +VL+SI
Sbjct: 61  TDYPFKPPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSI 109
Query: 169 QALVLNEKP 177
            +L+ +  P
Sbjct: 110 CSLLCDPNP 118

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 44  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 98
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 99  --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 132

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 43  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 97
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 98  --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 131

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 45  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 99
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 100 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 133

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 45  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 99
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 100 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 133

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 46  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 134

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 48  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 102
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 103 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 136

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 51  PAGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
           P GS   K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + F
Sbjct: 15  PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 74
Query: 109 PADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
           P DYP  PP V   +F  R+ +PN+ +NG + L +L +       +W+P   T+ +VL+S
Sbjct: 75  PTDYPFKPPKV---AFTTRIYHPNINSNGSIXLDILRS-------QWSP-ALTISKVLLS 123
Query: 168 IQALVLNEKP 177
           I +L+ +  P
Sbjct: 124 ICSLLCDPNP 133

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 4   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG + L +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 64  PPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 175 EKP 177
             P
Sbjct: 113 PNP 115

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           S K+I +E   +    P +       + I   R+ I+G  G+ Y  G+FF D+ F  DYP
Sbjct: 4   SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
             PP V +R+     N N  + G +CL +L        + W+P   T+ +VL+SI +L+ 
Sbjct: 64  FKPPKVTFRTRIYHCNIN--SQGVICLDILK-------DNWSP-ALTISKVLLSICSLLT 113
Query: 174 NEKP 177
           +  P
Sbjct: 114 DCNP 117

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 46  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P    P   
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQSPAQA 134

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A   K+I++E + L       I    +++ +   +  I G   +PY DG+F  +L  P D
Sbjct: 4   ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V +       +PN+   GR+CL +L T        W+P    +  VL+SIQAL
Sbjct: 64  YPMEAPKVRF--LTKIYHPNIDRLGRICLDVLKT-------NWSP-ALQIRTVLLSIQAL 113
Query: 172 VLNEKPYFNEP 182
           + +  P  N+P
Sbjct: 114 LASPNP--NDP 122

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G VCLS+L   
Sbjct: 46  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P    P   
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQAPAQA 134

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 82  IDLL--RAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVC 139
           +DL+  +  I G   T +  GL+   +AFP +YP  PP   +       +PN+Y +G VC
Sbjct: 42  LDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP--PLFHPNVYPSGTVC 99
Query: 140 LSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
           LS+LN     + E W P   T+ Q+L+ IQ L+
Sbjct: 100 LSILN-----EEEGWKP-AITIKQILLGIQDLL 126

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A   K+I++E + L       I    +++ +   +  I G   +PY DG+F  +L  P D
Sbjct: 2   ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V +       +PN+   GR+CL +L T        W+P    +  VL+SIQAL
Sbjct: 62  YPMEAPKVRF--LTKIYHPNIDRLGRICLDVLKT-------NWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKPYFNEP 182
           + +  P  N+P
Sbjct: 112 LASPNP--NDP 120

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP
Sbjct: 1   ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 114 NHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
             PP V   +F  R+ +PN+ +NG + L +L +       +W+P    + +VL+SI +L+
Sbjct: 61  FKPPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALKISKVLLSICSLL 109
Query: 173 LNEKP 177
            +  P
Sbjct: 110 CDPNP 114

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +P +Y +G VCLS+L   
Sbjct: 46  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPQVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 134

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           + S K+I +E   +    P +       + I   R+ I+G  G+ Y  G+FF D+ F  +
Sbjct: 47  STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP  PP V +R+     N N  + G +CL +L        + W+P   T+ +VL+SI +L
Sbjct: 107 YPFKPPKVTFRTRIYHCNIN--SQGVICLDILK-------DNWSP-ALTISKVLLSICSL 156
Query: 172 VLNEKP 177
           + +  P
Sbjct: 157 LTDCNP 162

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+  +G VCLS+L   
Sbjct: 46  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVAPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 134

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 54  SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           S K ++ E K L++   E   V  V E  +      I G   T Y  G F   L FP DY
Sbjct: 8   SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLL-----NTWTGK-KSEKWNPDESTVLQVLV 166
           P  PP   +R      +PN+Y  G VC+S+L     +  +G+  SE+WNP ++ V  +L+
Sbjct: 68  PYSPPA--FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQN-VRTILL 124
Query: 167 SIQALVLNEKPYFN 180
           S+ +L LNE   F+
Sbjct: 125 SVISL-LNEPNTFS 137

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 4   KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +P + +NG + L +L +       +W+P   T+ +VL+SI +L+ +
Sbjct: 64  PPKV---AFTTRIYHPAINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 175 EKP 177
             P
Sbjct: 113 PNP 115

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 53  GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           G  ++I +E + L    P  I              +I G  GTPY  G +  +L  P  Y
Sbjct: 1   GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
           P  PP V  R      +PN+   GR+CL +L        +KW+P    +  VL+SIQAL+
Sbjct: 61  PMEPPKV--RFLTKIYHPNIDKLGRICLDIL-------KDKWSP-ALQIRTVLLSIQALL 110
Query: 173 LNEKP 177
            + +P
Sbjct: 111 SSPEP 115

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L++  P         + +   +A I+G   + Y  G+FF  + FP DYP  
Sbjct: 10  KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP +   +F  ++ +PN+ +NG + L +L +       +W+P   TV +VL+SI +L+ +
Sbjct: 70  PPKI---AFTTKIYHPNINSNGSIKLDILRS-------QWSP-ALTVSKVLLSICSLLCD 118
Query: 175 EKP 177
             P
Sbjct: 119 PNP 121

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 53  GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           G  ++I +E + L    P  I              +I G  GTPY  G +  +L  P  Y
Sbjct: 1   GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
           P  PP V  R      +PN+   GR+CL +L        +KW+P    +  VL+SIQAL+
Sbjct: 61  PMEPPKV--RFLTKIYHPNIDKLGRICLDIL-------KDKWSP-ALQIRTVLLSIQALL 110
Query: 173 LNEKP 177
            + +P
Sbjct: 111 SSPEP 115

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 54  SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           S K ++ E K L++   E   V  V E  +      I G   T Y  G F   L FP DY
Sbjct: 5   SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 64
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLL-----NTWTGK-KSEKWNPDESTVLQVLV 166
           P  PP   +R      +PN+Y  G VC+S+L     +  +G+  SE+WNP ++ V  +L+
Sbjct: 65  PYSPPA--FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQN-VRTILL 121
Query: 167 SIQALVLNEKPYFN 180
           S+ +L LNE   F+
Sbjct: 122 SVISL-LNEPNTFS 134

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 56  KKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
           K+IM+E + ++      I +  V E+ I  L+   +G  GTPY  G F  D+  P +YP 
Sbjct: 5   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 115 HPPMVHYRSFGLRLNPNLYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
            PP + + +     +PN+ +  G +CL +L          W+P   T+   L+S+QAL+ 
Sbjct: 65  KPPKMQFDT--KVYHPNISSVTGAICLDILRN-------AWSP-VITLKSALISLQALLQ 114
Query: 174 NEKPYFNEP 182
           + +P  N+P
Sbjct: 115 SPEP--NDP 121

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G V LS+L   
Sbjct: 43  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVSLSIL--- 97
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 98  --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 131

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 56  KKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
           K+IM+E + ++      I +  V E+ I  L+   +G  GTPY  G F  D+  P +YP 
Sbjct: 4   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 115 HPPMVHYRSFGLRLNPNLYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
            PP + + +     +PN+ +  G +CL +L          W+P   T+   L+S+QAL+ 
Sbjct: 64  KPPKMQFDT--KVYHPNISSVTGAICLDILKN-------AWSP-VITLKSALISLQALLQ 113
Query: 174 NEKPYFNEP 182
           + +P  N+P
Sbjct: 114 SPEP--NDP 120

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
             I G  GTP+  GLF   + F  DYP+ PP   +       +PN+Y +G V LS+L   
Sbjct: 43  CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVXLSIL--- 97
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
             ++ + W P   T+ Q+L+ IQ L LNE P   +P   
Sbjct: 98  --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 131

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 48  DHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDL--LRAVIVGTAGTPYHDGLFFFD 105
           ++ P    + + +E   L    P+ I  +V+ N  DL  L+  I G  GTPY  GLF   
Sbjct: 8   ENLPPHIIRLVYKEVTTLTADPPDGI--KVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMK 65
Query: 106 LAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLN-TWTGKKSEKWNPDESTVLQV 164
           L    D+P  PP  ++ +     +PN+ ANG +C+++L   WT          E  +  V
Sbjct: 66  LLLGKDFPASPPKGYFLTK--IFHPNVGANGEICVNVLKRDWTA---------ELGIRHV 114
Query: 165 LVSIQALVLNEKP 177
           L++I+ L+++  P
Sbjct: 115 LLTIKCLLIHPNP 127

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 56  KKIMQEWKILEKHLPESIF---VRVYENRIDLLR--AVIVGTAGTPYHDGLFFFDLAFPA 110
           +++ +E K   K  P   +   V+  +  +DL +  A I G  GT +  G++   + +P 
Sbjct: 9   QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           +YP+ PP V + + G   +PN+Y +G +CLS+LN     + + W P   T+ Q+++ +Q 
Sbjct: 69  EYPSKPPKVKFPA-GF-YHPNVYPSGTICLSILN-----EDQDWRP-AITLKQIVLGVQD 120
Query: 171 LVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI 206
           L+ +  P  N P     P    + +    Y++ V +
Sbjct: 121 LLDSPNP--NSPAQE--PAWRSFSRNKAEYDKKVLL 152

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 56  KKIMQEWKILEKHLPESIF---VRVYENRIDLLR--AVIVGTAGTPYHDGLFFFDLAFPA 110
           +++ +E K   K  P   +   V+  +  +DL +  A I G  GT +  G++   + +P 
Sbjct: 7   QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           +YP+ PP V + + G   +PN+Y +G +CLS+LN     + + W P   T+ Q+++ +Q 
Sbjct: 67  EYPSKPPKVKFPA-GF-YHPNVYPSGTICLSILN-----EDQDWRP-AITLKQIVLGVQD 118
Query: 171 LVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI 206
           L+ +  P  N P     P    + +    Y++ V +
Sbjct: 119 LLDSPNP--NSPAQE--PAWRSFSRNKAEYDKKVLL 150

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 73  IFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132
           +  ++    I   R  I G  GTPY  G F  D+  P DYP +PP + + +     +PN+
Sbjct: 65  VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT--KIWHPNI 122
Query: 133 YAN-GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP 177
            +  G +CL +L         +W+P   T+   L+SIQA++ +  P
Sbjct: 123 SSQTGAICLDILK-------HEWSP-ALTIRTALLSIQAMLADPVP 160

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A   K+I++E + L       I    +++ +   +  I G   +PY DG+F  +L  P D
Sbjct: 2   ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V +       +PN+   GR+ L +L T        W+P    +  VL+SIQAL
Sbjct: 62  YPMEAPKVRF--LTKIYHPNIDRLGRISLDVLKT-------NWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKPYFNEP 182
           + +  P  N+P
Sbjct: 112 LASPNP--NDP 120

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A   K+I++E + L       I    +++ +   +  I G   +PY DG+F  +L  P D
Sbjct: 2   ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V +       +P +   GR+ L +L T        W+P    +  VL+SIQAL
Sbjct: 62  YPMEAPKVRF--LTKIYHPAIDRLGRISLDVLKT-------NWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKPYFNEP 182
           + +  P  N+P
Sbjct: 112 LASPNP--NDP 120

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 57  KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
           ++ +E K +E    + I   + ++        I G  GTPY  G F   +  P DYP +P
Sbjct: 27  RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 117 PMVHYRSFGLRLNPNLYAN-GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175
           P + + +     +PN+ +  G +CL +L         +W+P   T+   L+SIQAL+ + 
Sbjct: 87  PKIKFVT--KIWHPNISSQTGAICLDVLKN-------EWSP-ALTIRTALLSIQALLSDP 136
Query: 176 KP 177
           +P
Sbjct: 137 QP 138

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 53  GSHK---KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
           GSH    ++++E + L+K  P  +     ++   L+   ++     PYH   F   ++FP
Sbjct: 1   GSHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFP 60
Query: 110 ADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
            +YP  PPM+ + +     +PN+  NG++CL +++      SE W P   T  QVL ++ 
Sbjct: 61  PEYPFKPPMIKFTTKI--YHPNVDENGQICLPIIS------SENWKPCTKTC-QVLEALN 111
Query: 170 ALVLNEKPYFNEP 182
            LV   +P   EP
Sbjct: 112 VLV--NRPNIREP 122

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           AG  ++I++E + L       I     E+       VI G   +P+  G F  +L  P +
Sbjct: 7   AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 66
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V + +     +PN+   GR+CL +L        +KW+P    +  VL+SIQAL
Sbjct: 67  YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 116
Query: 172 VLNEKP 177
           +    P
Sbjct: 117 LSAPNP 122

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           AG  ++I++E + L       I     E+       VI G   +P+  G F  +L  P +
Sbjct: 4   AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 63
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V + +     +PN+   GR+CL +L        +KW+P    +  VL+SIQAL
Sbjct: 64  YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 113
Query: 172 VLNEKP 177
           +    P
Sbjct: 114 LSAPNP 119

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           AG  ++I++E + L       I     E+       VI G   +P+  G F  +L  P +
Sbjct: 5   AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 64
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V + +     +PN+   GR+CL +L        +KW+P    +  VL+SIQAL
Sbjct: 65  YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 114
Query: 172 VLNEKP 177
           +    P
Sbjct: 115 LSAPNP 120

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 77  VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANG 136
           V +N I     +++G   T Y  G F   L FP DYP  PP + + S     +PN+   G
Sbjct: 28  VDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFIS--EIWHPNIDKEG 85
Query: 137 RVCLSLL-----NTWTGKK-SEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGH 184
            VC+S+L     + W  ++  E+W P   TV  +L+S+ +++ +  P F  P +
Sbjct: 86  NVCISILHDPGDDKWGYERPEERWLP-VHTVETILLSVISMLTD--PNFESPAN 136

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 96  PYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWN 155
           PY  G F  ++ FPA+YP  PP + +++     +PN+   G+VCL +++      +E W 
Sbjct: 47  PYDKGAFRIEINFPAEYPFKPPKITFKT--KIYHPNIDEKGQVCLPVIS------AENWK 98
Query: 156 PDESTVLQVLVSIQALVLNEKP 177
           P   T  QV+ S+ ALV + +P
Sbjct: 99  PATKTD-QVIQSLIALVNDPQP 119

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           AG  ++I++E + L       I     E+       VI G   +P+  G F  +L  P +
Sbjct: 2   AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V + +     +PN+   GR+CL +L        +KW+P    +  VL+SIQAL
Sbjct: 62  YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKP 177
           +    P
Sbjct: 112 LSAPNP 117

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 96  PYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWN 155
           PY  G F  ++ FPA+YP  PP + +++     +PN+   G+VCL +++      +E W 
Sbjct: 45  PYDKGAFRIEINFPAEYPFKPPKITFKT--KIYHPNIDEKGQVCLPVIS------AENWK 96
Query: 156 PDESTVLQVLVSIQALVLNEKP 177
           P   T  QV+ S+ ALV + +P
Sbjct: 97  PATKTD-QVIQSLIALVNDPQP 117

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 57  KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
           ++++E + L+K  P  +     ++   L+   ++     PYH   F   ++FP +YP  P
Sbjct: 5   RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 64
Query: 117 PMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEK 176
           PM+ + +     +PN+  NG++CL +++      SE W P   T  QVL ++  LV   +
Sbjct: 65  PMIKFTTKI--YHPNVDENGQICLPIIS------SENWKPCTKTC-QVLEALNVLV--NR 113
Query: 177 PYFNEP 182
           P   EP
Sbjct: 114 PNIREP 119

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 53  GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           G  ++I++E + L       I     E+       VI G   +P+  G F  +L  P +Y
Sbjct: 1   GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
           P   P V + +     +PN+   GR+CL +L        +KW+P    +  VL+SIQAL+
Sbjct: 61  PMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQALL 110
Query: 173 LNEKP 177
               P
Sbjct: 111 SAPNP 115

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 83  DLLR--AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCL 140
           DL R   +I+G   T Y  G+F   L FP DYP  PP + +       +PN+  NG VC+
Sbjct: 46  DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKF--ITEIWHPNVDKNGDVCI 103
Query: 141 SLLNT------WTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           S+L+          K  E+W P   TV  +++S+ +++ +
Sbjct: 104 SILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISMLAD 142

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFV--RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
           A   K++ +E   L+   P  + +  +  +N I      + G  GT Y    F     F 
Sbjct: 21  ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 80
Query: 110 ADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           + YP   P V +    + ++P++Y+NG +CLS+L       +E W+P  S V  V +SI 
Sbjct: 81  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL-------TEDWSPALS-VQSVCLSII 132
Query: 170 ALV 172
           +++
Sbjct: 133 SML 135

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
             ++ +I +E      + P +  + V+ N I +     VG   T Y + ++   + FP D
Sbjct: 5   GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDD 64
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP  PP+V++     + + ++Y+NG +CLSLL        + +NP  S    VL  I  L
Sbjct: 65  YPLKPPIVYFLQKPPK-HTHVYSNGDICLSLL-------GDDYNPSLSISGLVLSIISML 116

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 87  AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLL-NT 145
           A + G   T Y    +   L FP+DYP  PP+V + +     +PN+  +G +CL +L   
Sbjct: 43  ATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC--WHPNVDQSGNICLDILKEN 100
Query: 146 WTGKKSEKWNPDESTVLQVLVSIQALV--LNEKPYFNEPGHGMWPGRSIWEK 195
           WT             V  +L+S+Q+L+   N     N     MW  ++ ++K
Sbjct: 101 WTASYD---------VRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKK 143

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
             ++ +I +E     K+ P +  + V+ + I +     VG   T Y + ++   + FP +
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDN 78
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP  PP+V++     + + ++Y+NG +CLS+L        + +NP  S    +L  I  L
Sbjct: 79  YPLKPPIVYFLQKPPK-HTHVYSNGDICLSVL-------GDDYNPSLSISGLILSIISML 130

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 51  PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
           P  + +++ Q++  ++K     I      + I     V+ G   TPY  G +   L FP 
Sbjct: 12  PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71
Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNP--DESTVLQVLVS 167
           ++P  PP ++     +  N     N R+CLS+    T    + WNP    ST+L  L+S
Sbjct: 72  EFPFKPPSIYM----ITPNGRFKCNTRLCLSI----TDFHPDTWNPAWSVSTILTGLLS 122

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 35  HYITSSFTKKNGRDHFPAGSHKKIMQEWKIL---EKHLPESIFVRVYENRIDLLRAVIVG 91
           H  + +  ++ GR      + ++I +E+K +   E+     I V + +     LR  I G
Sbjct: 3   HMASMTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAG 62
Query: 92  TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYA-NGRVCLSLL-NTWTG 148
              TPY  G +  ++  P  YP +PP V +       +PN+ +  G +CL +L + W  
Sbjct: 63  PPDTPYEGGRYQLEIKIPETYPFNPPKVRF--ITKIWHPNISSVTGAICLDILKDQWAA 119

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 77  VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANG 136
           + E  +    A+I G + TPY +  F   +  P+ YP +PP + +    +  +    A G
Sbjct: 42  IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATG 101
Query: 137 RVCLSLLNTWTGKKSEKWNP 156
            +CL++L      K E+W P
Sbjct: 102 EICLNIL------KPEEWTP 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	3e-96
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	4e-27
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	4e-26
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	5e-26
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-25
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	2e-25
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	3e-25
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	8e-25
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	9e-25
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-24
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	1e-24
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	1e-24
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	2e-24
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-24
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-24
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	2e-24
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	3e-24
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	4e-24
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	4e-24
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	5e-24
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	8e-24
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	1e-23
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-23
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-23
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-23
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	3e-23
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	4e-23
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-22
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-21
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-21
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	7e-21
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	9e-21
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	1e-20
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	2e-20
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-20
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	3e-20
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	4e-20
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	5e-20
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	3e-19
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	3e-19
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	5e-19
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	5e-19
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	2e-18
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	3e-18
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	4e-18
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	6e-18
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	2e-17
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	2e-17
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	8e-17
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	2e-15
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	4e-13
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	1e-04

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  288 bits (738), Expect = 3e-96
 Identities = 97/315 (30%), Positives = 160/315 (50%), Gaps = 30/315 (9%)

Query: 2   ALTINTNPQKPNGEIEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAG 53
            L++  + ++    + + + F  F++VS+  D        +HY++      +      A 
Sbjct: 20  PLSVLKSLEEKYVAVMKKLQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNANDAN---SAA 76

Query: 54  SHKKIMQEWKILEKHLPE----SIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
             +++ QE   L   LP     S+FVR  E R+D+++ +I G A TPY +G F FD+ FP
Sbjct: 77  RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFP 136

Query: 110 ADYPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLV 166
            DYP+ PP+V+  + G   +R NPNLY +G+VCLS+LNTW G+  EKWNP  S+ LQVLV
Sbjct: 137 QDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLV 196

Query: 167 SIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEG 225
           S+Q+L+L  +PYFNEPG+    G     + S  Y+ ++   + K +M   +RNP   F+ 
Sbjct: 197 SVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKE 256

Query: 226 FVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIV 285
            +  HF  +   I++ C+ +++   +       G +    ++             +    
Sbjct: 257 VIHKHFYLKRVEIMAQCEEWIADIQQYSSDKRVGRTMSHHAA-----------ALKRHTA 305

Query: 286 QLYPELVTAFSRTGA 300
           QL  EL+      G 
Sbjct: 306 QLREELLKLPCPEGL 320

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  103 bits (258), Expect = 4e-27
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 15/147 (10%)

Query: 27  VVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLR 86
           + S    HH+ +    + +      A   K++ +E   L+   P  + +     +  + +
Sbjct: 1   MGSSHHHHHHSSGLVPRGS-----MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQ 55

Query: 87  --AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLN 144
               + G  GT Y    F     F + YP   P V +    + ++P++Y+NG +CLS+L 
Sbjct: 56  WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL- 114

Query: 145 TWTGKKSEKWNPDESTVLQVLVSIQAL 171
                 +E W+P   +V  V +SI ++
Sbjct: 115 ------TEDWSP-ALSVQSVCLSIISM 134

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  101 bits (254), Expect = 4e-26
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           +   K +++E   LE +LP +  V   +        + V      Y  G F F+   P  
Sbjct: 13  SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDA 72

Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           Y   PP V   +   ++ +PN+   G +CLSLL          W P   T+  V+  + +
Sbjct: 73  YNMVPPKVKCLT---KIWHPNITETGEICLSLLRE-HSIDGTGWAP-TRTLKDVVWGLNS 127

Query: 171 LVLNEKPYFNEP 182
           L   +   F++P
Sbjct: 128 L-FTDLLNFDDP 138

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  100 bits (250), Expect = 5e-26
 Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 38  TSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPY 97
           + +  K     +    ++ +I +E     K+ P +  + V+ + I +     VG   T Y
Sbjct: 5   SRTVEKHIKTKYNLGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIY 64

Query: 98  HDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPD 157
            + ++   + FP +YP  PP+V++       + ++Y+NG +CLS+L        + +NP 
Sbjct: 65  ANEVYKIKIIFPDNYPLKPPIVYFLQKPP-KHTHVYSNGDICLSVL-------GDDYNP- 115

Query: 158 ESTVLQVLVSIQAL 171
             ++  +++SI ++
Sbjct: 116 SLSISGLILSIISM 129

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 99.6 bits (249), Expect = 1e-25
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 12/119 (10%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + K++M+++K L++  P  I     +N I L  AVI G   TP+  G F   L F  DYP
Sbjct: 5   ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64

Query: 114 NHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           N PP V    F  R+ +PN+YA+G +CL +L         +W+P    V  +L SIQ+L
Sbjct: 65  NKPPTV---RFVSRMFHPNIYADGSICLDILQ-------NQWSP-IYDVAAILTSIQSL 112

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 99.7 bits (249), Expect = 2e-25
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 13/123 (10%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + +++M+++K +++  P  +      + + +  A+I+G A TPY DG F   L F  +YP
Sbjct: 5   ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64

Query: 114 NHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
           N PP V    F   + +PN+YANG +CL +L         +W P    V  +L SIQ+L 
Sbjct: 65  NKPPHV---KFLSEMFHPNVYANGEICLDILQ-------NRWTP-TYDVASILTSIQSL- 112

Query: 173 LNE 175
            N+
Sbjct: 113 FND 115

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 97.7 bits (244), Expect = 3e-25
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
             ++ +I +E      + P +  + V+ N I +     VG   T Y + ++   + FP D
Sbjct: 5   GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDD 64

Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP  PP+V++       + ++Y+NG +CLSLL        + +NP   ++  +++SI ++
Sbjct: 65  YPLKPPIVYFLQKPP-KHTHVYSNGDICLSLL-------GDDYNP-SLSISGLVLSIISM 115

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 97.8 bits (244), Expect = 8e-25
 Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 13/132 (9%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
             + K++M E+K L  + PE I    + E       A+I+G   T +  G+F   L+FP 
Sbjct: 2   GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 61

Query: 111 DYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTVLQ 163
           DYP  PP +    F   + +PN+Y +GRVC+S+L+            +E+W+P   +V +
Sbjct: 62  DYPLSPPKM---RFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEK 117

Query: 164 VLVSIQALVLNE 175
           +L+S+ ++ L E
Sbjct: 118 ILLSVVSM-LAE 128

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 98.7 bits (246), Expect = 9e-25
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 10/151 (6%)

Query: 51  PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
           P  + +++ Q++  ++K     I      + I     V+ G   TPY  G +   L FP 
Sbjct: 12  PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71

Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           ++P  PP ++  +     N     N R+CLS+ +       + WNP   +V  +L  + +
Sbjct: 72  EFPFKPPSIYMITP----NGRFKCNTRLCLSITDF----HPDTWNP-AWSVSTILTGLLS 122

Query: 171 LVLNEKPYFNEPGHGMWPGRSIWEKKSTAYN 201
            ++ + P            +     +S A+N
Sbjct: 123 FMVEKGPTLGSIET-SDFTKRQLAVQSLAFN 152

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 13/130 (10%)

Query: 54  SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           + K++++E + L K  P  I      EN I +   +I G   TPY DG+F   L FP DY
Sbjct: 5   AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64

Query: 113 PNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWT------GKKSEKWNPDESTVLQVL 165
           P  PP +   +F   + +PN+Y NG VC+S+L++            E+W+P   +V ++L
Sbjct: 65  PLSPPKL---TFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP-VQSVEKIL 120

Query: 166 VSIQALVLNE 175
           +S+ ++ L+E
Sbjct: 121 LSVMSM-LSE 129

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 15/141 (10%)

Query: 32  SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVG 91
           S HH+   S  ++N    +  G+ K+I +E   L K  P +       + +   +A I+G
Sbjct: 3   SSHHHHHHSSGREN---LYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMG 59

Query: 92  TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKK 150
              +PY  G+FF ++ FP+DYP  PP V   +F  ++ +PN+ + G +CL +L       
Sbjct: 60  PEDSPYSGGVFFLNIHFPSDYPFKPPKV---NFTTKIYHPNINSQGAICLDIL------- 109

Query: 151 SEKWNPDESTVLQVLVSIQAL 171
            ++W+P   T+ +VL+SI +L
Sbjct: 110 KDQWSP-ALTISKVLLSISSL 129

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 96.9 bits (242), Expect = 1e-24
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           + + +E   L    P+ I V   E  +  L+  I G  GTPY  GLF   L    D+P  
Sbjct: 16  RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75

Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           PP      F  ++ +PN+ ANG +C+++L          W  +   +  VL++I+ L
Sbjct: 76  PPKG---YFLTKIFHPNVGANGEICVNVL-------KRDWTAE-LGIRHVLLTIKCL 121

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 96.9 bits (242), Expect = 2e-24
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 14/122 (11%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
               K++ QE + L       I      + +    A + G   T Y    +   L FP+D
Sbjct: 8   HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67

Query: 112 YPNHPPMVHYRS--FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           YP  PP+V + +  +    +PN+  +G +CL +L        E W      V  +L+S+Q
Sbjct: 68  YPYKPPVVKFTTPCW----HPNVDQSGNICLDIL-------KENWTA-SYDVRTILLSLQ 115

Query: 170 AL 171
           +L
Sbjct: 116 SL 117

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 96.2 bits (240), Expect = 2e-24
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           AG  ++I++E + L       I     E+       VI G   +P+  G F  +L  P +
Sbjct: 4   AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 63

Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP   P V    F  ++ +PN+   GR+CL +L        +KW+P    +  VL+SIQA
Sbjct: 64  YPMAAPKV---RFMTKIYHPNVDKLGRICLDILK-------DKWSPA-LQIRTVLLSIQA 112

Query: 171 L 171
           L
Sbjct: 113 L 113

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 96.6 bits (241), Expect = 2e-24
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
            ++ +E  +L    P  I     ++++D LRA I+G A TPY  G+F  ++  P  YP  
Sbjct: 7   SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFE 66

Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           PP +    F   + +PN+ + GR+CL +L          W P    +  VL SIQ L
Sbjct: 67  PPQI---RFLTPIYHPNIDSAGRICLDVLKL---PPKGAWRPS-LNIATVLTSIQLL 116

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 96.2 bits (240), Expect = 2e-24
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A   K+I++E + L       I    +++ +   +  I G   +PY DG+F  +L  P D
Sbjct: 4   ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63

Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP   P V    F  ++ +PN+   GR+CL +L          W+P    +  VL+SIQA
Sbjct: 64  YPMEAPKV---RFLTKIYHPNIDRLGRICLDVLK-------TNWSPA-LQIRTVLLSIQA 112

Query: 171 L 171
           L
Sbjct: 113 L 113

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 96.2 bits (240), Expect = 3e-24
 Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 16/126 (12%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLL-----RAVIVGTAGTPYHDGLFFFDLAFPA 110
            ++ QE K   K  P        +N    +        I G  GTP+  GLF   + F  
Sbjct: 10  SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69

Query: 111 DYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           DYP+ PP      F   L +PN+Y +G VCLS+L     ++ + W P   T+ Q+L+ IQ
Sbjct: 70  DYPSSPPKC---KFEPPLFHPNVYPSGTVCLSIL-----EEDKDWRP-AITIKQILLGIQ 120

Query: 170 ALVLNE 175
            L LNE
Sbjct: 121 EL-LNE 125

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 95.4 bits (238), Expect = 4e-24
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 15/123 (12%)

Query: 53  GSH---KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
           GSH   K+I +E + L +  P         + +   +A I+G   +PY  G+FF  + FP
Sbjct: 1   GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFP 60

Query: 110 ADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
            DYP  PP V   +F  R+ +PN+ +NG +CL +L         +W+P   T+ +VL+SI
Sbjct: 61  TDYPFKPPKV---AFTTRIYHPNINSNGSICLDIL-------RSQWSP-ALTISKVLLSI 109

Query: 169 QAL 171
            +L
Sbjct: 110 CSL 112

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 96.7 bits (241), Expect = 4e-24
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           + S K+I +E   +    P +       + I   R+ I+G  G+ Y  G+FF D+ F  +
Sbjct: 47  STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106

Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           YP  PP V   +F  R+ + N+ + G +CL +L        + W+P   T+ +VL+SI +
Sbjct: 107 YPFKPPKV---TFRTRIYHCNINSQGVICLDIL-------KDNWSP-ALTISKVLLSICS 155

Query: 171 L 171
           L
Sbjct: 156 L 156

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 95.4 bits (238), Expect = 5e-24
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 53  GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           G  ++I +E + L    P  I              +I G  GTPY  G +  +L  P  Y
Sbjct: 1   GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60

Query: 113 PNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           P  PP V    F  ++ +PN+   GR+CL +L        +KW+P    +  VL+SIQAL
Sbjct: 61  PMEPPKV---RFLTKIYHPNIDKLGRICLDIL-------KDKWSPA-LQIRTVLLSIQAL 109

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 95.1 bits (237), Expect = 8e-24
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP
Sbjct: 20  ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79

Query: 114 NHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
             PP V   +F  R+ +PN+ +NG +CL +L         +W+P   T+ +VL+SI +L
Sbjct: 80  FKPPKV---AFTTRIYHPNINSNGSICLDIL-------RSQWSP-ALTISKVLLSICSL 127

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 94.6 bits (236), Expect = 1e-23
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 16/128 (12%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLL-----RAVIVGTAGTPYHDGLFFFDLAF 108
             +++ +E K   K  P   + +  +     +      A I G  GT +  G++   + +
Sbjct: 5   CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 64

Query: 109 PADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
           P +YP+ PP V    F     +PN+Y +G +CLS+L      + + W P   T+ Q+++ 
Sbjct: 65  PNEYPSKPPKV---KFPAGFYHPNVYPSGTICLSIL-----NEDQDWRP-AITLKQIVLG 115

Query: 168 IQALVLNE 175
           +Q L L+ 
Sbjct: 116 VQDL-LDS 122

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 32  SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVG 91
           S HH+  SS     G  H  A  +  + +++  L+++  + I  +     +      I G
Sbjct: 4   SHHHHHHSSGLVPRGSMHGRA--YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEG 61

Query: 92  TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS--FGLRLNPNLYAN-GRVCLSLLNTWTG 148
              + +   +F   + F ++Y   PP+V + +  F    +PN+  + G+ C+  L     
Sbjct: 62  LQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF----HPNVDPHTGQPCIDFL----- 112

Query: 149 KKSEKWNPDESTVLQVLVSIQALVLNE 175
              EKWN    T+  +L+++Q + L+ 
Sbjct: 113 DNPEKWNT-NYTLSSILLALQVM-LSN 137

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 37  ITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGT 95
           + SS    +            + ++   L K+  E      + +N +     +I+G   T
Sbjct: 1   MGSSHHHHHHSSGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDT 60

Query: 96  PYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKK---- 150
            Y  G+F   L FP DYP  PP + + +    + +PN+  NG VC+S+L+     K    
Sbjct: 61  LYEGGVFKAHLTFPKDYPLRPPKMKFIT---EIWHPNVDKNGDVCISILHEPGEDKYGYE 117

Query: 151 --SEKWNPDESTVLQVLVSIQALVLNE 175
              E+W P   TV  +++S+ ++ L +
Sbjct: 118 KPEERWLP-IHTVETIMISVISM-LAD 142

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 14/122 (11%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
               K++ QE   L     + I      + +      I G AGT Y D  +   L FP+ 
Sbjct: 29  GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSG 88

Query: 112 YPNHPPMVHYRS--FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           YP + P V + +  +    +PN+   G + L +L        EKW+     V  +L+SIQ
Sbjct: 89  YPYNAPTVKFLTPCY----HPNVDTQGNISLDIL-------KEKWSA-LYDVRTILLSIQ 136

Query: 170 AL 171
           +L
Sbjct: 137 SL 138

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 16/126 (12%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENR---IDLLR--AVIVGTAGTPYHDGLFFFDLAFPA 110
            ++ +E K   +  P   + +  ++    +DL+     I G   T +  GL+   +AFP 
Sbjct: 13  TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72

Query: 111 DYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           +YP  PP      F   L +PN+Y +G VCLS+L      + E W P   T+ Q+L+ IQ
Sbjct: 73  EYPTRPPKC---RFTPPLFHPNVYPSGTVCLSIL-----NEEEGWKP-AITIKQILLGIQ 123

Query: 170 ALVLNE 175
            L L++
Sbjct: 124 DL-LDD 128

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 94.0 bits (234), Expect = 4e-23
 Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 13/132 (9%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
             S K ++ E K L++   E   V  V E  +      I G   T Y  G F   L FP 
Sbjct: 6   PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPI 65

Query: 111 DYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLN------TWTGKKSEKWNPDESTVLQ 163
           DYP  PP      F  ++ +PN+Y  G VC+S+L+            SE+WNP    V  
Sbjct: 66  DYPYSPPAF---RFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNP-TQNVRT 121

Query: 164 VLVSIQALVLNE 175
           +L+S+ +L LNE
Sbjct: 122 ILLSVISL-LNE 132

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 90.8 bits (226), Expect = 3e-22
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 54  SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           + +++M+E + + K   ++     V E  +   + +I      PY  G F  ++ FPA+Y
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61

Query: 113 PNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           P  PP +    F  ++ +PN+   G+VCL ++       +E W P  +   QV+ S+ AL
Sbjct: 62  PFKPPKIT---FKTKIYHPNIDEKGQVCLPVI------SAENWKP-ATKTDQVIQSLIAL 111

Query: 172 V 172
           V
Sbjct: 112 V 112

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 32  SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVG 91
           S HH+   S  ++N      +    ++ +E K +E    + I   + ++        I G
Sbjct: 3   SSHHHHHHSSGRENLYFQ-GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKG 61

Query: 92  TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS--FGLRLNPNLYAN-GRVCLSLLNTWTG 148
             GTPY  G F   +  P DYP +PP + + +  +    +PN+ +  G +CL +L     
Sbjct: 62  PEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIW----HPNISSQTGAICLDVLK---- 113

Query: 149 KKSEKWNPDESTVLQVLVSIQAL 171
               +W+P   T+   L+SIQAL
Sbjct: 114 ---NEWSP-ALTIRTALLSIQAL 132

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           +  ++++E + L+K  P  +     ++   L+   ++     PYH   F   ++FP +YP
Sbjct: 5   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYP 64

Query: 114 NHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
             PPM+ + +   ++ +PN+  NG++CL ++       SE W P  +   QVL ++  LV
Sbjct: 65  FKPPMIKFTT---KIYHPNVDENGQICLPII------SSENWKP-CTKTCQVLEALNVLV 114

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 86.9 bits (216), Expect = 7e-21
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%)

Query: 56  KKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
           K+IM+E + ++      I +  V E+ I  L+   +G  GTPY  G F  D+  P +YP 
Sbjct: 4   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63

Query: 115 HPPMVHYRSFGLRL-NPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
            PP +    F  ++ +PN+    G +CL +L          W+P   T+   L+S+QAL
Sbjct: 64  KPPKM---QFDTKVYHPNISSVTGAICLDILK-------NAWSPV-ITLKSALISLQAL 111

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 86.6 bits (215), Expect = 9e-21
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 34  HHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVR--VYENRIDLLR--AVI 89
           HH+   S  ++N           +++ E +  +K              + I L      I
Sbjct: 2   HHHHHHSSGRENLYFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTI 61

Query: 90  VGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN-PNLYANGRVCLSLLNTWTG 148
            G  GT + + ++   +    +YP+ PP V + +   ++    +   GRV  + L+    
Sbjct: 62  FGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT---KIEMSCVDNCGRVIKNNLHI--- 115

Query: 149 KKSEKWNPDESTVLQVLVSIQALVLNE 175
              + WN    T+  +L+S++  +L+ 
Sbjct: 116 --LKNWNR-NYTIETILISLRQEMLSS 139

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 91.5 bits (227), Expect = 1e-20
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 12/124 (9%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E   L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65

Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V   +F  R+ +PN+ +NG + L +L         +W+P   T+ +VL+SI +L+ +
Sbjct: 66  PPKV---AFTTRIYHPNINSNGSISLDIL-------RSQWSP-ALTISKVLLSICSLLCD 114

Query: 175 EKPY 178
             P 
Sbjct: 115 PNPD 118

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 25/135 (18%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRA----VIVGTAGTPYHDGLFFFDLAFP 109
           +  ++ ++   L+     ++ V    +  D  ++    VIV      Y+ G   F+L F 
Sbjct: 30  ARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFN 89

Query: 110 ADYPNHPPMVHYRS--FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
             YP  PP V      F    +PN+   G VCL++L        E W+P    +  ++  
Sbjct: 90  EVYPIEPPKVVCLKKIF----HPNIDLKGNVCLNIL-------REDWSPA-LDLQSIITG 137

Query: 168 IQALVLNEKPYFNEP 182
           +  L       F EP
Sbjct: 138 LLFL-------FLEP 145

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 87.6 bits (217), Expect = 2e-20
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
           +   K+IM+E + ++      I +  V E+ I  L+   +G  GTPY  G F  D+  P 
Sbjct: 1   SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60

Query: 111 DYPNHPPMVHYRSFGLRL-NPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
           +YP  PP +    F  ++ +PN+    G +CL +L          W+P   T+   L+S+
Sbjct: 61  EYPFKPPKM---QFDTKVYHPNISSVTGAICLDILR-------NAWSPV-ITLKSALISL 109

Query: 169 QAL 171
           QAL
Sbjct: 110 QAL 112

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 86.3 bits (214), Expect = 3e-20
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+  +E    E+     I V + +     LR  I G   TPY  G +  ++  P  YP +
Sbjct: 11  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 70

Query: 116 PPMVHYRSFGLRL-NPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           PP V    F  ++ +PN+    G +CL +L        ++W     T+  VL+S+QAL
Sbjct: 71  PPKV---RFITKIWHPNISSVTGAICLDILK-------DQWAAA-MTLRTVLLSLQAL 117

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 85.2 bits (211), Expect = 4e-20
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 21/131 (16%)

Query: 54  SHKKIMQEWKILEKHL---------PESIFVR---VYENRIDLLRAVIVGTAGTPYHDGL 101
              +I++E+K++ K L            I      + E  +    A+I G + TPY +  
Sbjct: 7   CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQ 66

Query: 102 FFFDLAFPADYPNHPPMVHYRSFGLRLNPNL-YANGRVCLSLLNTWTGKKSEKWNPDEST 160
           F   +  P+ YP +PP + +    + L+ N+  A G +CL++L      K E+W P    
Sbjct: 67  FRILIEVPSSYPMNPPKISFMQNNI-LHCNVKSATGEICLNIL------KPEEWTP-VWD 118

Query: 161 VLQVLVSIQAL 171
           +L  + ++  L
Sbjct: 119 LLHCVHAVWRL 129

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 85.0 bits (211), Expect = 5e-20
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 25/124 (20%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+  +E    E+     I V + +     LR  I G   TPY  G +  ++  P  YP +
Sbjct: 14  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 73

Query: 116 PPMV-------HYRSFGLRLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
           PP V       H         PN+    G +CL +L        ++W     T+  VL+S
Sbjct: 74  PPKVRFITKIWH---------PNISSVTGAICLDILK-------DQWAAA-MTLRTVLLS 116

Query: 168 IQAL 171
           +QAL
Sbjct: 117 LQAL 120

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 82.8 bits (205), Expect = 3e-19
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 32  SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDL----LRA 87
           S HH+  SS     G        + ++++E +  +K + +       E+  D+       
Sbjct: 4   SHHHHHHSSGLVPRGSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTG 63

Query: 88  VIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN-PNLYANGRV----CLSL 142
           +I+G   T Y + ++   +     YP  PP V + +   ++N   + ++  V     +S+
Sbjct: 64  MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT---KINMNGVNSSNGVVDPRAISV 120

Query: 143 LNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           L         KW     ++  VL  ++ L
Sbjct: 121 LA--------KWQN-SYSIKVVLQELRRL 140

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDL----LRAVIVGTAGTPYHDGLFFFDLAFPAD 111
            ++++E +  EK            +  D+        I+G   + + + ++   +    +
Sbjct: 9   FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPN 68

Query: 112 YPNHPPMVHYRSFGLRLN-PNLYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           YP+ PP V + S   ++N P +    G V               W     T+  +L+ ++
Sbjct: 69  YPDSPPKVTFIS---KINLPCVNPTTGEVQTDFH------TLRDWKR-AYTMETLLLDLR 118

Query: 170 AL 171
             
Sbjct: 119 KE 120

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 81.9 bits (203), Expect = 5e-19
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
             + ++     K +     + +          +  G  GT Y  G++   +  P DYP  
Sbjct: 2   TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFA 61

Query: 116 PPMVHYRS--FGLRLNPNL-YANGRVCLSLLNTWTGKKSEKWNP--DESTVLQVLVSIQA 170
            P + + +       +PN+  A+G VCL ++N       + W P      V    V +  
Sbjct: 62  SPSIGFMNKLL----HPNVDEASGSVCLDVIN-------QTWTPLYSLVNVF--EVFLPQ 108

Query: 171 L 171
           L
Sbjct: 109 L 109

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 84.6 bits (209), Expect = 5e-19
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+  +E    E+     I V + +     LR  I G   TPY  G +  ++  P  YP +
Sbjct: 63  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 122

Query: 116 PPMVHYRSFGLRL-NPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           PP V    F  ++ +PN+    G +CL +L        ++W     T+  VL+S+QAL
Sbjct: 123 PPKV---RFITKIWHPNISSVTGAICLDILK-------DQWAA-AMTLRTVLLSLQAL 169

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 81.4 bits (201), Expect = 2e-18
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 55  HKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
            ++               +  ++    I   R  I G  GTPY  G F  D+  P DYP 
Sbjct: 47  LQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY 106

Query: 115 HPPMVHYRSFGLRL-NPNLYAN-GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           +PP +    F  ++ +PN+ +  G +CL +L         +W+P   T+   L+SIQA+
Sbjct: 107 NPPKM---KFVTKIWHPNISSQTGAICLDILK-------HEWSPA-LTIRTALLSIQAM 154

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 80.2 bits (198), Expect = 3e-18
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 21/125 (16%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDL----LRAVIVGTAGTPYHDGLFFFDLAFPAD 111
            ++++E +  +K + +       E+  D+       +I+G   T Y + ++   +     
Sbjct: 38  FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 97

Query: 112 YPNHPPMVHYRSFGLRLN-PNLYANGRV----CLSLLNTWTGKKSEKWNPDESTVLQVLV 166
           YP  PP V + +   ++N   + ++  V     +S+L         KW     ++  VL 
Sbjct: 98  YPEAPPFVRFVT---KINMNGVNSSNGVVDPRAISVLA--------KWQN-SYSIKVVLQ 145

Query: 167 SIQAL 171
            ++ L
Sbjct: 146 ELRRL 150

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 23/131 (17%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLR-AVIVGTAGTPYHDGLFFFDLAFPADY 112
           +  +I ++   L       I    + +  DLL   +++      Y  G F F       Y
Sbjct: 27  AQLRIQKDINELNLPKTCDI---SFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGY 83

Query: 113 PNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           P+ PP V        + +PN+   G V L++L        E W P   T+  ++  +Q L
Sbjct: 84  PHDPPKV---KCETMVYHPNIDLEGNVALNIL-------REDWKPV-LTINSIIYGLQYL 132

Query: 172 VLNEKPYFNEP 182
                  F EP
Sbjct: 133 -------FLEP 136

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 79.7 bits (197), Expect = 6e-18
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 22/145 (15%)

Query: 32  SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVG 91
           S HH+  SS     G    P+   +++  +   L +   E   +      ++       G
Sbjct: 4   SHHHHHHSSGLVPRGSMSSPSPGKRRMDTDVIKLIESKHEVTIL----GGLNEFVVKFYG 59

Query: 92  TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS--FGLRLNPNL-YANGRVCLSLLNTWTG 148
             GTPY  G++   +  P  YP   P + + +  F    +PN+  A+G VCL ++N    
Sbjct: 60  PQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIF----HPNIDEASGTVCLDVIN---- 111

Query: 149 KKSEKWNP--DESTVLQVLVSIQAL 171
              + W    D + +      +  L
Sbjct: 112 ---QTWTALYDLTNIF--ESFLPQL 131

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 21/128 (16%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
            +I ++   L       I      + +   + VI       Y  G F F       YP+ 
Sbjct: 9   LRIQKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHD 66

Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
           PP V        + +PN+   G VCL++L        E W P   T+  ++  +Q L   
Sbjct: 67  PPKV---KCETMVYHPNIDLEGNVCLNIL-------REDWKP-VLTINSIIYGLQYL--- 112

Query: 175 EKPYFNEP 182
               F EP
Sbjct: 113 ----FLEP 116

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 24/132 (18%)

Query: 54  SHKKIMQEWKILEKHLPES------------IFVRVYENRIDLLRAVIVGTAGTPYH--D 99
           S+K+I+++ K+L + +  +                V  + I      +   A + Y    
Sbjct: 9   SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAG 68

Query: 100 GLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDES 159
             +   + F  DYP+ PP V + +     +P +   G +C  ++N       + W PD+ 
Sbjct: 69  NTYQLSVLFSDDYPHEPPTVRFVT--PVYSPLVTGEGGICDRMVN-------DFWTPDQ- 118

Query: 160 TVLQVLVSIQAL 171
               V+  +   
Sbjct: 119 HASDVIKLVLDR 130

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 76.3 bits (188), Expect = 8e-17
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 20/125 (16%)

Query: 51  PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
              S+++   +     +    +  V   +  +        G  GTPY DG +   +  P+
Sbjct: 10  NLRSNRRREMD---YMRLCNSTRKVYPSDT-VAEFWVEFKGPEGTPYEDGTWMLHVQLPS 65

Query: 111 DYPNHPPMVHYRSFGLRL-NPNL-YANGRVCLSLLNTWTGKKSEKWNP--DESTVLQVLV 166
           DYP   P +    F  R+ +PN+   +G VCL ++N       + W P      +    V
Sbjct: 66  DYPFKSPSI---GFCNRILHPNVDERSGSVCLDVIN-------QTWTPMYQLENIFD--V 113

Query: 167 SIQAL 171
            +  L
Sbjct: 114 FLPQL 118

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 71.5 bits (175), Expect = 2e-15
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 15/134 (11%)

Query: 55  HKKIMQEWKILEKHLPE-SIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF--PAD 111
               ++E   +     +    +  Y      L   + GT   PY    +   +       
Sbjct: 22  RDLTVRETVNVITLYKDLKPVLDSYGTGSREL-MNLTGTIPVPYRGNTYNIPICLWLLDT 80

Query: 112 YPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
           YP +PP+   +      ++   ++ ANG++ L  L+ W           +S +L ++  +
Sbjct: 81  YPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEW--------KHPQSDLLGLIQVM 132

Query: 169 QALVLNEKPYFNEP 182
             +  +E P F+ P
Sbjct: 133 IVVFGDEPPVFSRP 146

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 66.1 bits (161), Expect = 4e-13
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 25/162 (15%)

Query: 32  SDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLL---RAV 88
             HH+ +    + +G       +  ++M+E + + +       +   E   D L      
Sbjct: 6   HHHHHSSGLVPRGSGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVK 65

Query: 89  IVGT-AGTPYHDGL-----------FFFDLAFPADYPNHPPMVHYRSFGLRLNPNL-YAN 135
           +      +P H  L              + +F  ++P  PP V        L+       
Sbjct: 66  LQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL--PVLSGGYVLGG 123

Query: 136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP 177
           G +C+ LL        + W+    ++  V++ I A ++  K 
Sbjct: 124 GALCMELL------TKQGWSSA-YSIESVIMQINATLVKGKA 158

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A* Length = 162

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 21/115 (18%)

Query: 75  VRVYENRIDLLRAVIVGTAGTPYHDGLFF---FDLAFPADYPNHPPMVH---------YR 122
           V  + +    L   I GT  T             +  P+ YP  PP +            
Sbjct: 53  VFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTI 112

Query: 123 SFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP 177
           S  L +   + +NG + L +L          W+P    ++ V+  + + +L+E P
Sbjct: 113 SSSLPIQEYIDSNGWIALPIL--------HAWDPAAMNLIMVVQELMS-LLHEPP 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.89
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.64
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.64
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.34
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	95.23
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	93.95
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	92.57
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	90.86
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	90.56
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	85.17
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	83.89

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=2.9e-54  Score=420.31  Aligned_cols=263  Identities=35%  Similarity=0.652  Sum_probs=225.4

Q ss_pred             cCCCCCceeeCCCCC--------CccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCC----CeEEEeecCCcceEE
Q 018254           19 TISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPE----SIFVRVYENRIDLLR   86 (359)
Q Consensus        19 ~~~~~~f~~v~~~~d--------h~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~----gI~v~~~e~~l~~w~   86 (359)
                      ..+|.+||++++.+|        |||.+....   ....+++.+.+||++|++.|++++|.    ++++.++++|++.|+
T Consensus        37 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~  113 (323)
T 3ceg_A           37 KLQFDTFEMVSEDEDGKLGFKVNYHYMSQVKN---ANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMK  113 (323)
T ss_dssp             TTSEEEECCEEECTTSCEEESSCCTTHHHHHT---CCCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEE
T ss_pred             HhcCceeeecccccccccccccchHHHhhhhc---cCCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccE
Confidence            467999999987766        677654211   23456788999999999999999886    567889999999999


Q ss_pred             EEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccc---cccCCCcCCCCceeeccccccCCCCCCCcccCcccHHH
Q 018254           87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQ  163 (359)
Q Consensus        87 ~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i---~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~q  163 (359)
                      ++|.||+||||+||+|+|+|.||++||++||+|+|.|++   .+||||||.+|+||||+|++|+|.+.+.|+|++|+|.+
T Consensus       114 ~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~  193 (323)
T 3ceg_A          114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQ  193 (323)
T ss_dssp             EEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHH
T ss_pred             EEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHH
Confidence            999999999999999999999999999999999999983   14599999999999999999999888999999878999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH-HHHHHHhCCCCCcHHHHHHHHHHhhHHHHHHH
Q 018254          164 VLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK-SMTFLLRNPPKNFEGFVRSHFRERGHVILSAC  242 (359)
Q Consensus       164 VL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k-~m~~~l~~pp~~Fe~~V~~hf~~r~~~Il~~~  242 (359)
                      ||++||+||.+++|++++|++....|+.++.++++.|+++|+.++++ +|.++|++||..|+++|..||+.++..|+++|
T Consensus       194 VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~~~~i~~~~  273 (323)
T 3ceg_A          194 VLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQC  273 (323)
T ss_dssp             HHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhHHHHhCCCcccHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999986656789999999999999999976 57889999999999999999999999999999


Q ss_pred             HHHhccCcccceeccCCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHHHHHcC
Q 018254          243 KSYLSGHVRVGYYLNEGSSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTG  299 (359)
Q Consensus       243 ~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~s~~f~~~l~~~~~~l~~~f~~~g  299 (359)
                      ++|+++..+..         .+..      ......++..+|.+++.+|..+|.++-
T Consensus       274 ~~w~~e~~~~~---------~~~~------~~~~~~~~~~~l~~~~~~l~~~l~~~~  315 (323)
T 3ceg_A          274 EEWIADIQQYS---------SDKR------VGRTMSHHAAALKRHTAQLREELLKLP  315 (323)
T ss_dssp             HHHHHHHTTC---------------------CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhhhhhc---------cccc------cchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence            99999732110         0110      112344566889999999999998864

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-41  Score=303.71  Aligned_cols=166  Identities=25%  Similarity=0.453  Sum_probs=145.4

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      |..+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  ||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HP   79 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIY--HP   79 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCc--cc
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999999976  99


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      |||.+|+||||+|++|.   .+.|+|++ +|.+||++||+||.+|+|  ++|++.  +|+.+|.++++.|+++|+.++.+
T Consensus        80 Nv~~~G~iCl~iL~~~~---~~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~n~--~aa~~~~~~~~~y~~~~r~~~~~  151 (169)
T 1yh2_A           80 NIDSAGRICLDVLKLPP---KGAWRPSL-NIATVLTSIQLLMSEPNP--DDPLMA--DISSEFKYNKPAFLKNARQWTEK  151 (169)
T ss_dssp             TBCTTCBBCCGGGSCTT---TSCCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cCCcCCeEecccccCCc---ccCCCCCC-cHHHHHHHHHHHHhCCCC--cchHhH--HHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999998763   37899998 999999999999999999  999998  78999999999999999999988


Q ss_pred             HHHHHHhCCCCCcHHHHHH
Q 018254          211 SMTFLLRNPPKNFEGFVRS  229 (359)
Q Consensus       211 ~m~~~l~~pp~~Fe~~V~~  229 (359)
                      ++.   .++..++++.|+.
T Consensus       152 ~a~---~~~~~~~~~~~~~  167 (169)
T 1yh2_A          152 HAR---QKQKADEEEMLDN  167 (169)
T ss_dssp             HSC---CC-----------
T ss_pred             Hcc---ccccCCHHHHhhc
Confidence            665   3445667766653

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=3.8e-41  Score=299.07  Aligned_cols=154  Identities=26%  Similarity=0.502  Sum_probs=144.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      +.+.+||++|++.|++++|.||++.+.++ |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  ||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HP   79 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMF--HP   79 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC--CT
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCc--cC
Confidence            46899999999999999999999998766 9999999999999999999999999999999999999999999976  99


Q ss_pred             CcCCCCceeeccccccCC------CCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTG------KKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV  204 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G------~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v  204 (359)
                      |||.+|+|||++|++|.+      .+++.|+|++ ||.+||++|++||.+|++  ++|++.  +|+.+|.+++.+|+++|
T Consensus        80 NV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-ti~~vL~~i~~ll~~pn~--~~p~n~--~aa~~~~~~~~~f~~~~  154 (164)
T 3h8k_A           80 NIYPDGRVCISILHAPGDDPMGYESSAERWSPVQ-SVEKILLSVVSMLAEPND--ESGANV--DASKMWRDDREQFYKIA  154 (164)
T ss_dssp             TBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTC-CHHHHHHHHHHHHHSCCC--SSCSSH--HHHHHHHHCHHHHHHHH
T ss_pred             CCCCCCcEeeecccCcccccccccccccCCCCCC-cHHHHHHHHHHHHcCCCC--CCccCH--HHHHHHHHCHHHHHHHH
Confidence            999999999999998743      3468999998 899999999999999999  999998  78999999999999999


Q ss_pred             HHHHHHHH
Q 018254          205 FILSCKSM  212 (359)
Q Consensus       205 ~~~t~k~m  212 (359)
                      +.++.+++
T Consensus       155 ~~~~~~s~  162 (164)
T 3h8k_A          155 KQIVQKSL  162 (164)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998864

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=2.5e-41  Score=300.76  Aligned_cols=156  Identities=28%  Similarity=0.549  Sum_probs=143.9

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeec-CCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccccc
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYE-NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL  128 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e-~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rf  128 (359)
                      |++.+.+||++|+++|+++++.||++.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~--   78 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL--   78 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCS--
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCc--
Confidence            456789999999999999999999999864 79999999999999999999999999999999999999999999976  


Q ss_pred             CCCcCCCCceeeccccccCC------CCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHH
Q 018254          129 NPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNE  202 (359)
Q Consensus       129 HPNVy~~GkVCLslL~tw~G------~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne  202 (359)
                      |||||.+|+||||+|++|..      .+.+.|+|++ +|.+||++||+||.+|++  ++|+|.  +|+.+|.+++.+|++
T Consensus        79 HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~--~aa~~~~~~~~~y~~  153 (165)
T 2ucz_A           79 HPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQ-SVEKILLSVMSMLSEPNI--ESGANI--DACILWRDNRPEFER  153 (165)
T ss_dssp             CTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTC-CHHHHHHHHHHHHHSCCG--GGCCCH--HHHHHHHTTHHHHHH
T ss_pred             cCCCCCCCcEeehhhCCccccccccCCCCCCCCCcC-cHHHHHHHHHHHHhCCCC--CCchhH--HHHHHHHHCHHHHHH
Confidence            99999999999999987632      2368999998 999999999999999998  999998  789999999999999


Q ss_pred             HHHHHHHHHH
Q 018254          203 DVFILSCKSM  212 (359)
Q Consensus       203 ~v~~~t~k~m  212 (359)
                      +|+.++.+++
T Consensus       154 ~v~~~~~~~~  163 (165)
T 2ucz_A          154 QVKLSILKSL  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988753

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4e-41  Score=301.25  Aligned_cols=154  Identities=29%  Similarity=0.581  Sum_probs=145.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      |++.+.+||++|++.|++++|.||++.+.++|+..|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+++  |
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~--H   78 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF--H   78 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--C
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCc--c
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999976  9


Q ss_pred             CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||||.+|+|||++|.       +.|+|++ +|.+||++|++||.+|+|  ++|+|.  +|+.+|.++++.|+++|+.++.
T Consensus        79 PNI~~~G~ICl~iL~-------~~WsP~~-~i~~vL~si~~ll~~Pn~--~~P~n~--~aa~~~~~d~~~y~~~~r~~~~  146 (169)
T 1ayz_A           79 PNVYANGEICLDILQ-------NRWTPTY-DVASILTSIQSLFNDPNP--ASPANV--EAATLFKDHKSQYVKRVKETVE  146 (169)
T ss_dssp             TTBCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHTCCCC--SSCSSH--HHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEeehhhc-------cCCCCcC-cHHHHHHHHHHHHhCCCC--CcHHHH--HHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999997       7899999 999999999999999999  999998  7899999999999999999999


Q ss_pred             HHHHHHHh
Q 018254          210 KSMTFLLR  217 (359)
Q Consensus       210 k~m~~~l~  217 (359)
                      +++.....
T Consensus       147 ~~a~~~~~  154 (169)
T 1ayz_A          147 KSWEDDMD  154 (169)
T ss_dssp             HHHHHHTC
T ss_pred             HHcCCCcc
Confidence            88776543

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.6e-41  Score=298.04  Aligned_cols=151  Identities=25%  Similarity=0.459  Sum_probs=143.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccc
Q 018254           47 RDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGL  126 (359)
Q Consensus        47 ~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~  126 (359)
                      ...+++.+.+||++|++.|++++|.||++.++++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++
T Consensus         7 ~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   86 (158)
T 1zdn_A            7 VENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF   86 (158)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             ccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcc
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             ccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHH
Q 018254          127 RLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI  206 (359)
Q Consensus       127 rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~  206 (359)
                        |||||.+|+|||++|+       +.|+|.+ +|.+||++|++||.+|+|  ++|+|.  +|+.+|.++++.|+++|+.
T Consensus        87 --HPnv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~p~n~--~aa~~~~~d~~~f~~~a~~  152 (158)
T 1zdn_A           87 --HPNVGANGEICVNVLK-------RDWTAEL-GIRHVLLTIKCLLIHPNP--ESALNE--EAGRLLLENYEEYAARARL  152 (158)
T ss_dssp             --CTTBCTTSBBCHHHHT-------TTCCTTC-CHHHHHHHHHHHHHSCCG--GGCSSH--HHHHHHHHCHHHHHHHHHH
T ss_pred             --cCCCCCCCEEehhhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHH
Confidence              9999999999999997       7899998 999999999999999999  999998  7899999999999999999


Q ss_pred             HHHHH
Q 018254          207 LSCKS  211 (359)
Q Consensus       207 ~t~k~  211 (359)
                      ++.++
T Consensus       153 ~t~~~  157 (158)
T 1zdn_A          153 LTEIH  157 (158)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98775

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.2e-41  Score=296.48  Aligned_cols=148  Identities=27%  Similarity=0.466  Sum_probs=139.1

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      |..+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  ||
T Consensus         3 s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HP   80 (154)
T 2c2v_B            3 SAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY--HP   80 (154)
T ss_dssp             SCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC--CT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcc--cC
Confidence            3456799999999999999999999999999999999999999999999999999999999999999999999976  99


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      |||.+|+|||++|+       +.|+|++ +|.+||++|++||.+|+|  ++|++.  +|+.+|.+|++.|+++|+.++.+
T Consensus        81 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~n~--~aa~~~~~d~~~f~~~ar~~~~~  148 (154)
T 2c2v_B           81 NVDKLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPNP--DDPLAN--DVAEQWKTNEAQAIETARAWTRL  148 (154)
T ss_dssp             TBCTTCBBCCHHHH-------TSCCTTC-CHHHHHHHHHHHTTSCCC--CCC--C--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccCCeEEchhcc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999997       7999998 999999999999999999  999998  78999999999999999999987


Q ss_pred             HH
Q 018254          211 SM  212 (359)
Q Consensus       211 ~m  212 (359)
                      ++
T Consensus       149 ~a  150 (154)
T 2c2v_B          149 YA  150 (154)
T ss_dssp             HS
T ss_pred             hc
Confidence            65

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=9.5e-41  Score=293.33  Aligned_cols=149  Identities=34%  Similarity=0.633  Sum_probs=142.0

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      |++.+.+||++|++.|+++++.||++.+.++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  |
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--H   78 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF--H   78 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--C
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcc--c
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999976  9


Q ss_pred             CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||||.+|+|||++|.       +.|+|++ +|.+||.+|++||.+|++  ++|+|.  +|+.+|.++++.|+++|+.++.
T Consensus        79 Pnv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~y~~~~~~~~~  146 (152)
T 2aak_A           79 PNIYADGSICLDILQ-------NQWSPIY-DVAAILTSIQSLLCDPNP--NSPANS--EAARMYSESKREYNRRVRDVVE  146 (152)
T ss_dssp             TTBCTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHTSCCT--TSCSSH--HHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEechhhc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CccccH--HHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999997       7899998 999999999999999999  999998  7899999999999999999988


Q ss_pred             HHH
Q 018254          210 KSM  212 (359)
Q Consensus       210 k~m  212 (359)
                      +++
T Consensus       147 ~~a  149 (152)
T 2aak_A          147 QSW  149 (152)
T ss_dssp             HHC
T ss_pred             HHc
Confidence            764

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1e-40  Score=297.83  Aligned_cols=147  Identities=29%  Similarity=0.560  Sum_probs=140.8

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      .+.+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||+|.|+|.||++||++||+|+|.|+++  ||
T Consensus        19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~--HP   96 (166)
T 2ayv_A           19 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIY--HP   96 (166)
T ss_dssp             CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC--BT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCc--CC
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999999986  99


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      |||.+|+|||++|+       +.|+|++ +|.+||++|++||.+|+|  ++|++.  +|+.+|.++++.|+++|+.++.+
T Consensus        97 NI~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pn~--~~Pln~--~aa~l~~~d~~~f~~~ar~~~~~  164 (166)
T 2ayv_A           97 NINSQGAICLDILK-------DQWSPAL-TISKVLLSISSLLTDPNP--DDPLVP--EIAHLYKSDRMRYDQTAREWSQK  164 (166)
T ss_dssp             TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEccccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CchhhH--HHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999997       7999998 999999999999999999  999998  78999999999999999999877


Q ss_pred             H
Q 018254          211 S  211 (359)
Q Consensus       211 ~  211 (359)
                      +
T Consensus       165 ~  165 (166)
T 2ayv_A          165 Y  165 (166)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.1e-40  Score=292.26  Aligned_cols=145  Identities=26%  Similarity=0.470  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      +.+||++|+++|++++|.||++.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  |||||
T Consensus         2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HPnv~   79 (149)
T 2r0j_A            2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIY--HPNID   79 (149)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCC--BTTBC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCc--cCCCC
Confidence            3589999999999999999999999999999999999999999999999999999999999999999999976  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      .+|+|||++|+       +.|+|++ +|.+||++|++||.+|+|  ++|++.  +++.+|.++++.|+++|+.++++++
T Consensus        80 ~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~f~~~~~~~~~~~a  146 (149)
T 2r0j_A           80 KLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSSPEP--DDPLDS--KVAEHFKQDKNDAEHVARQWNKIYA  146 (149)
T ss_dssp             TTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSSC--HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEechhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCchhH--HHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            99999999997       8999998 999999999999999999  999998  7899999999999999999998754

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=1.6e-40  Score=291.29  Aligned_cols=147  Identities=29%  Similarity=0.526  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      ..+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  |||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HPn   80 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY--HPN   80 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcc--cCc
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999976  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      ||.+|+|||++|+       +.|+|++ +|.+||++|++||.+|+|  ++|++.  +++.+|.++++.|+++|+.+++++
T Consensus        81 v~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~n~--~aa~~~~~~~~~f~~~~~~~~~~~  148 (150)
T 1z2u_A           81 INSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVP--EIARIYKTDRERYNQLAREWTQKY  148 (150)
T ss_dssp             BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEeecccc-------CCCCCCC-CHHHHHHHHHHHhhCCCC--CCccCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997       7999998 999999999999999999  999998  679999999999999999999875


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      +
T Consensus       149 a  149 (150)
T 1z2u_A          149 A  149 (150)
T ss_dssp             C
T ss_pred             h
Confidence            3

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=2.1e-40  Score=290.98  Aligned_cols=147  Identities=27%  Similarity=0.511  Sum_probs=141.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  |||
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPn   80 (151)
T 4gpr_A            3 AMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVY--HPN   80 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcc--cce
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999976  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      |+.+|+|||++|.       +.|+|++ +|.+||++|++||.+|+|  ++|.+.  +++.+|.++++.|+++|+.++.++
T Consensus        81 v~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~d~~~f~~~ar~~~~~y  148 (151)
T 4gpr_A           81 INKNGVICLDILK-------DQWSPAL-TLSRVLLSISSLLTDPNP--SDPLDP--EVANVLRANKKQFEDTAREWTRMY  148 (151)
T ss_dssp             BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHCCCT--TSCSSH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ECCCCEEEccccc-------CCCCCCC-cHHHHHHHHHHHhcCCCC--CCchhH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            9999999999997       7999998 999999999999999999  999998  789999999999999999999876


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      +
T Consensus       149 a  149 (151)
T 4gpr_A          149 A  149 (151)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=2.1e-40  Score=295.43  Aligned_cols=151  Identities=28%  Similarity=0.494  Sum_probs=141.9

Q ss_pred             CCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccc
Q 018254           48 DHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLR  127 (359)
Q Consensus        48 ~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~r  127 (359)
                      ....+.+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||+|.|+|.||++||++||+|+|.|+++ 
T Consensus        14 ~~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~-   92 (165)
T 2c4o_A           14 VPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY-   92 (165)
T ss_dssp             --CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC-
T ss_pred             ccCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCc-
Confidence            3345678999999999999999999999999999999999999999999999999999999999999999999999976 


Q ss_pred             cCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          128 LNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       128 fHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                       |||||.+|+|||++|+       +.|+|++ +|.+||++||+||.+|+|  ++|++.  +|+.+|.+++++|+++|+.+
T Consensus        93 -HPnV~~~G~ICl~iL~-------~~W~P~~-ti~~vL~si~~ll~~pn~--~~P~n~--~aa~~~~~d~~~y~~~ar~~  159 (165)
T 2c4o_A           93 -HPNINSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVP--EIARIYKTDREKYNRIAREW  159 (165)
T ss_dssp             -BTTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH--HHHHHHHHCHHHHHHHHHHH
T ss_pred             -CCcCCCCCeEeehhhc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CccccH--HHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999997       7999998 999999999999999999  999998  67999999999999999999


Q ss_pred             HHHHH
Q 018254          208 SCKSM  212 (359)
Q Consensus       208 t~k~m  212 (359)
                      +++++
T Consensus       160 ~~~~a  164 (165)
T 2c4o_A          160 TQKYA  164 (165)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            87753

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=3.3e-40  Score=291.23  Aligned_cols=148  Identities=24%  Similarity=0.398  Sum_probs=140.6

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      +++.+.+||++|++.|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  |
T Consensus         6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--H   83 (156)
T 2e2c_A            6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW--H   83 (156)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--B
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcc--c
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999976  9


Q ss_pred             CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||||.+|+|||++|+       +.|+|++ +|.+||++|++||.+|++  ++|+|.  +|+.+| +++++|+++|+.++.
T Consensus        84 Pnv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~pn~--~~p~n~--~aa~~~-~d~~~y~~~~~~~~~  150 (156)
T 2e2c_A           84 PNVDQSGNICLDILK-------ENWTASY-DVRTILLSLQSLLGEPNN--ASPLNA--QAADMW-SNQTEYKKVLHEKYK  150 (156)
T ss_dssp             TTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHTTSCCC--SSCSCH--HHHHHT-TCHHHHHHHHHHHHH
T ss_pred             CCCccCceEECcccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCHHHH--HHHHHh-cCHHHHHHHHHHHHH
Confidence            999999999999997       7899998 999999999999999999  999998  678899 899999999999998


Q ss_pred             HHH
Q 018254          210 KSM  212 (359)
Q Consensus       210 k~m  212 (359)
                      +++
T Consensus       151 ~~~  153 (156)
T 2e2c_A          151 TAQ  153 (156)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=9.5e-41  Score=309.65  Aligned_cols=184  Identities=21%  Similarity=0.354  Sum_probs=142.8

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      .++.+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|  |
T Consensus        20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~--H   97 (216)
T 2pwq_A           20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIW--H   97 (216)
T ss_dssp             CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--B
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCc--C
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999987  9


Q ss_pred             CCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHH
Q 018254          130 PNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILS  208 (359)
Q Consensus       130 PNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t  208 (359)
                      |||| .+|.|||++|+       +.|+|++ +|.+||++||+||.+|+|  ++|++.  +++.+|.+++..|+++|+.++
T Consensus        98 PNI~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~dPln~--eaa~~~~~d~~~f~~~ar~~t  165 (216)
T 2pwq_A           98 PNISSQTGAICLDVLK-------NEWSPAL-TIRTALLSIQALLSDPQP--DDPQDA--EVAKMYKENHALFVKTASVWT  165 (216)
T ss_dssp             TTBCTTTCBBCCHHHH-------HHCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCcCCCCEEEchhhc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHH
Confidence            9999 69999999997       7899998 999999999999999999  999998  789999999999999999999


Q ss_pred             HHHHHHH-HhCCCCCcHHHHHHHHHHhhHHHHHHHHHHhc
Q 018254          209 CKSMTFL-LRNPPKNFEGFVRSHFRERGHVILSACKSYLS  247 (359)
Q Consensus       209 ~k~m~~~-l~~pp~~Fe~~V~~hf~~r~~~Il~~~~~~~~  247 (359)
                      .+++..- ........+.++.-+|.+....+.-.|..|-.
T Consensus       166 ~~ya~~~~~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~  205 (216)
T 2pwq_A          166 KTFATGPKEEPREVIIKKITEMGFSEDQAKNALIKANWNE  205 (216)
T ss_dssp             HHHSCCC---------------------------------
T ss_pred             HHhcCCCcccchhhHHHHHHHcCCCHHHHHHHHHHcCCch
Confidence            8765421 11112334555556666655555555555543

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=4.1e-40  Score=297.96  Aligned_cols=158  Identities=28%  Similarity=0.447  Sum_probs=141.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEE-eecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~-~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      +.+.|||++|++.|+++++.||++. ++++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  ||
T Consensus         6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HP   83 (183)
T 3rz3_A            6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW--HP   83 (183)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--CT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc--cC
Confidence            5689999999999999999999999 78889999999999999999999999999999999999999999999976  99


Q ss_pred             CcCCCCceeeccccccCCC------CCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHH------cHH
Q 018254          131 NLYANGRVCLSLLNTWTGK------KSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEK------KST  198 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~------~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~------~~~  198 (359)
                      |||.+|+||||+|++|.++      +.+.|+|++ +|.+||++||+||.+|++  ++|+|.  +|+.+|++      +.+
T Consensus        84 nV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~--~aa~~~~~~~~~~~~~~  158 (183)
T 3rz3_A           84 NIYETGDVCISILHPPVDDPQSGELPSERWNPTQ-NVRTILLSVISLLNEPNT--FSPANV--DASVMYRKWKESKGKDR  158 (183)
T ss_dssp             TBCTTSBBCCTTC--------------CCCCTTC-CHHHHHHHHHHHHHSCCC--SSCSSH--HHHHHHHHHHHTTTCCC
T ss_pred             CCCCCCcEehhhcCcccccccccccccCCCCCcC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHhcccccccHH
Confidence            9999999999999875422      358999999 899999999999999999  999998  78899988      678


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018254          199 AYNEDVFILSCKSMTFLL  216 (359)
Q Consensus       199 ~Yne~v~~~t~k~m~~~l  216 (359)
                      +|+++|+.++.+++....
T Consensus       159 ~y~~~v~~~v~~s~~~~~  176 (183)
T 3rz3_A          159 EYTDIIRKQVLGTKVDAE  176 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999988776553

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=3.1e-40  Score=291.09  Aligned_cols=146  Identities=27%  Similarity=0.473  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      .+.+||++|++.|+++++.||++.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  ||||
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HPnv   82 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY--HPNI   82 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCC--BTTB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccc--cCCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999976  9999


Q ss_pred             CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      |.+|+|||++|.       +.|+|++ +|.+||++|++||.+|++  ++|++.  +++.+|.++++.|+++|+.++.+++
T Consensus        83 ~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~f~~~~r~~~~~~a  150 (155)
T 1jat_A           83 DRLGRICLDVLK-------TNWSPAL-QIRTVLLSIQALLASPNP--NDPLAN--DVAEDWIKNEQGAKAKAREWTKLYA  150 (155)
T ss_dssp             CTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSTTCC--TTHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEchhhc-------cCCCCCC-CHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999999999996       7999998 999999999999999999  999998  6799999999999999999998754

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=4.5e-40  Score=292.90  Aligned_cols=150  Identities=25%  Similarity=0.519  Sum_probs=140.0

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecC-----CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYEN-----RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~-----~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      -|..+.+||++|+++|++++|.||++.+.++     |+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+
T Consensus         7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~   86 (163)
T 3rcz_B            7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP   86 (163)
T ss_dssp             --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence            3567999999999999999999999999876     89999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHH
Q 018254          125 GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV  204 (359)
Q Consensus       125 i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v  204 (359)
                      ++  |||||.+|+|||++|+.     .+.|+|++ +|.+||++|++||.+|++  ++|++.  +++.+|.+|+..|+++|
T Consensus        87 i~--HPnV~~~G~iCl~iL~~-----~~~W~p~~-ti~~vL~~i~~ll~~P~~--~~p~n~--~aa~~~~~d~~~y~~~~  154 (163)
T 3rcz_B           87 LF--HPNVYPSGTVCLSILNE-----EEGWKPAI-TIKQILLGIQDLLDDPNI--ASPAQT--EAYTMFKKDKVEYEKRV  154 (163)
T ss_dssp             CC--STTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TSCSCH--HHHHHHHHCHHHHHHHH
T ss_pred             Cc--cCCCCCCCcEeccccCC-----CCCcCCcC-cHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHHHH
Confidence            76  99999999999999972     35799998 999999999999999999  999998  78999999999999999


Q ss_pred             HHHHHHH
Q 018254          205 FILSCKS  211 (359)
Q Consensus       205 ~~~t~k~  211 (359)
                      +.++.++
T Consensus       155 r~~~~~y  161 (163)
T 3rcz_B          155 RAQAREN  161 (163)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998774

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=8.9e-40  Score=289.27  Aligned_cols=151  Identities=24%  Similarity=0.474  Sum_probs=141.6

Q ss_pred             CCCChhHHHHHHHHHHHHHhc---CCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           48 DHFPAGSHKKIMQEWKILEKH---LPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        48 ~~~ss~a~kRL~kEl~~L~k~---~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ..|++.+.+||++|+++|+++   ++.||++.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus         3 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   82 (159)
T 2bep_A            3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   82 (159)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence            457778999999999999985   57899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHH
Q 018254          125 GLRLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNED  203 (359)
Q Consensus       125 i~rfHPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~  203 (359)
                      ++  ||||| .+|+|||++|+       +.|+|++ +|.+||++||+||.+|+|  ++|.+.  +++.+|.++++.|+++
T Consensus        83 i~--HPni~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~f~~~  148 (159)
T 2bep_A           83 IW--HPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA--VVANQYKQNPEMFKQT  148 (159)
T ss_dssp             CC--BTTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHH
T ss_pred             CC--ccCCCCCCCEEeChhhh-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHH
Confidence            76  99999 69999999997       7899998 999999999999999999  999998  7899999999999999


Q ss_pred             HHHHHHHHH
Q 018254          204 VFILSCKSM  212 (359)
Q Consensus       204 v~~~t~k~m  212 (359)
                      |+.++.+++
T Consensus       149 a~~~~~~~a  157 (159)
T 2bep_A          149 ARLWAHVYA  157 (159)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhh
Confidence            999998754

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=8.8e-40  Score=291.27  Aligned_cols=154  Identities=21%  Similarity=0.310  Sum_probs=143.0

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccccc
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL  128 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rf  128 (359)
                      -.+.+.+||++|++.|++++|.||++.+ +++++..|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+++  
T Consensus        11 ~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~--   87 (167)
T 3fn1_B           11 RVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW--   87 (167)
T ss_dssp             CCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC--
T ss_pred             chhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc--
Confidence            3467899999999999999999999995 567899999998 899999999999999999999999999999999976  


Q ss_pred             CCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc-CCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          129 NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN-EKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       129 HPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~-p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                      |||||.+|+|||++|++| |.+.+.|+|++ +|.+||++||+||.+ |++  ++|+|.  +|+.+|.+++..|+++|+.+
T Consensus        88 HPnv~~~G~iCl~iL~~~-~~~~~~W~p~~-~i~~vl~~i~~ll~~~pn~--~~p~n~--eaa~~~~~~~~~f~~~~r~~  161 (167)
T 3fn1_B           88 HPNITETGEICLSLLREH-SIDGTGWAPTR-TLKDVVWGLNSLFTDLLNF--DDPLNI--EAAEHHLRDKEDFRNKVDDY  161 (167)
T ss_dssp             CSSBCTTCCBCCGGGSBC-SSSTTSBCTTC-CHHHHHHHHHHTTTTTCCS--SSCSCH--HHHHHHHHCHHHHHHHHHHH
T ss_pred             cCCCCCCCEEechhhccC-CCCCCCCCCcC-cHHHHHHHHHHHHcCCCCC--CcchhH--HHHHHHHHCHHHHHHHHHHH
Confidence            999999999999999987 66678999998 999999999999999 688  999998  78999999999999999999


Q ss_pred             HHHHH
Q 018254          208 SCKSM  212 (359)
Q Consensus       208 t~k~m  212 (359)
                      +.+++
T Consensus       162 ~~~~A  166 (167)
T 3fn1_B          162 IKRYA  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            88753

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=1e-39  Score=288.44  Aligned_cols=150  Identities=25%  Similarity=0.552  Sum_probs=138.8

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeec-----CCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYE-----NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e-----~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      |++.+.+||++|++.|++++|.||++.+.+     +|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            345689999999999999999999999875     489999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHH
Q 018254          125 GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV  204 (359)
Q Consensus       125 i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v  204 (359)
                      ++  |||||.+|+|||++|+.     .+.|+|++ +|.+||++|++||.+|++  ++|++.  +|+.+|.+++++|+++|
T Consensus        81 i~--HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~y~~~~  148 (157)
T 2gjd_A           81 FY--HPNVYPSGTICLSILNE-----DQDWRPAI-TLKQIVLGVQDLLDSPNP--NSPAQE--PAWRSFSRNKAEYDKKV  148 (157)
T ss_dssp             CC--CTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TCCCCH--HHHHHHHHCHHHHHHHH
T ss_pred             Cc--cCCCCCCCcEeeecccC-----CCCCCCCC-cHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHHHH
Confidence            76  99999999999999983     24899998 999999999999999988  999998  78999999999999999


Q ss_pred             HHHHHHH
Q 018254          205 FILSCKS  211 (359)
Q Consensus       205 ~~~t~k~  211 (359)
                      +.++.++
T Consensus       149 ~~~~~~~  155 (157)
T 2gjd_A          149 LLQAKQY  155 (157)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998765

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=3.9e-40  Score=288.54  Aligned_cols=145  Identities=26%  Similarity=0.555  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      +.+||++|++.|+++++.||++.+.++ |++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  ||||
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HPni   79 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY--HPNI   79 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCC--BTTB
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCc--cCCC
Confidence            479999999999999999999999887 9999999999999999999999999999999999999999999976  9999


Q ss_pred             CC-CCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          133 YA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       133 y~-~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      |. +|+|||++|.       +.|+|++ +|.+||++||+||.+|+|  ++|.+.  +|+.+|.++++.|+++|+.++.++
T Consensus        80 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~d~~~f~~~a~~~~~~~  147 (149)
T 1fxt_A           80 SSVTGAICLDILK-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDA--EVAQHYLRDRESFNKTAALWTRLY  147 (149)
T ss_dssp             CSSSCCBCCHHHH-------TSCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSH--HHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEeCCcCC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            97 9999999997       7899998 999999999999999999  999998  789999999999999999999875


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      +
T Consensus       148 a  148 (149)
T 1fxt_A          148 A  148 (149)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.9e-40  Score=295.54  Aligned_cols=148  Identities=26%  Similarity=0.385  Sum_probs=138.7

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      +++.+.+||++|++.|+++++.||++.++++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|  |
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~--H  104 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCY--H  104 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCC--S
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCc--c
Confidence            56779999999999999999999999999999999999999999999999999999999999999999999999976  9


Q ss_pred             CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||||.+|+|||++|.       +.|+|++ +|.+||++|++||.+|++  ++|++.  +++.+| +++++|+++|+.++.
T Consensus       105 PNV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pln~--~aa~l~-~d~~~f~~~v~~~v~  171 (179)
T 1i7k_A          105 PNVDTQGNISLDILK-------EKWSALY-DVRTILLSIQSLLGEPNI--DSPLNT--HAAELW-KNPTAFKKYLQETYS  171 (179)
T ss_dssp             TTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHT-TSHHHHHHHHHHHHH
T ss_pred             CccccCCeEEcccCc-------CcCCCCC-CHHHHHHHHHHHHhCCCC--cchhhH--HHHHHh-hCHHHHHHHHHHHHH
Confidence            999999999999997       7899998 999999999999999999  999998  679999 999999999998877


Q ss_pred             HHH
Q 018254          210 KSM  212 (359)
Q Consensus       210 k~m  212 (359)
                      +++
T Consensus       172 ~~~  174 (179)
T 1i7k_A          172 KQV  174 (179)
T ss_dssp             TTC
T ss_pred             HHh
Confidence            654

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=1.6e-39  Score=288.29  Aligned_cols=153  Identities=27%  Similarity=0.497  Sum_probs=141.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhcCCCCeEEEeec-----CCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeec
Q 018254           48 DHFPAGSHKKIMQEWKILEKHLPESIFVRVYE-----NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYR  122 (359)
Q Consensus        48 ~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e-----~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~  122 (359)
                      .+|++.+.+||++|++.|++++|.||++.+.+     +|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.
T Consensus         2 ~~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   81 (161)
T 2grr_A            2 SHMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE   81 (161)
T ss_dssp             --CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             CcccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence            34677899999999999999999999999874     6899999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHH
Q 018254          123 SFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNE  202 (359)
Q Consensus       123 T~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne  202 (359)
                      |+++  |||||.+|+|||++|+.     .+.|+|++ +|.+||++|++||.+|++  ++|++.  +|+.+|.+++++|++
T Consensus        82 t~i~--HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~y~~  149 (161)
T 2grr_A           82 PPLF--HPNVYPSGTVCLSILEE-----DKDWRPAI-TIKQILLGIQELLNEPNI--QSPAQA--EAYTIYCQNRVEYEK  149 (161)
T ss_dssp             SCCC--STTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHH
T ss_pred             cCcc--cCCCCCCCeEeehhcCC-----CCCcCCCC-cHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHH
Confidence            9976  99999999999999972     35899998 999999999999999998  999998  789999999999999


Q ss_pred             HHHHHHHHHH
Q 018254          203 DVFILSCKSM  212 (359)
Q Consensus       203 ~v~~~t~k~m  212 (359)
                      +|+.++.+++
T Consensus       150 ~~~~~~~~~a  159 (161)
T 2grr_A          150 RVRAQAKKFA  159 (161)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999987753

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.2e-39  Score=292.29  Aligned_cols=149  Identities=24%  Similarity=0.454  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeec-CCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYE-NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e-~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      +.+.+||++|+++|++++|.||++.+.+ +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+++  ||
T Consensus        16 ~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~--HP   93 (172)
T 2awf_A           16 PRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW--HP   93 (172)
T ss_dssp             CTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC--CT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc--cC
Confidence            5689999999999999999999999865 79999999999999999999999999999999999999999999976  99


Q ss_pred             CcCCCCceeeccccccCC------CCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHH-HHHHH
Q 018254          131 NLYANGRVCLSLLNTWTG------KKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKST-AYNED  203 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G------~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~-~Yne~  203 (359)
                      |||.+|+|||++|++|..      ...+.|+|++ +|.+||++||+||.+|++  ++|+|.  +|+.+|.++++ +|+++
T Consensus        94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~p~n~--~aa~~~~~d~~~~f~~~  168 (172)
T 2awf_A           94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISMLADPNG--DSPANV--DAAKEWREDRNGEFKRK  168 (172)
T ss_dssp             TBCTTCBBCCGGGSCC---------CTTSCCTTC-CHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CCCCCCcEehhhcCCcccccccccccCCCCCCcC-cHHHHHHHHHHHHHCcCC--CCccCH--HHHHHHHHCcHHHHHHH
Confidence            999999999999987532      2458999998 999999999999999998  999998  67999999999 99999


Q ss_pred             HHHH
Q 018254          204 VFIL  207 (359)
Q Consensus       204 v~~~  207 (359)
                      |+.+
T Consensus       169 vr~~  172 (172)
T 2awf_A          169 VARC  172 (172)
T ss_dssp             ----
T ss_pred             HHhC
Confidence            8753

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-39  Score=290.95  Aligned_cols=151  Identities=19%  Similarity=0.348  Sum_probs=140.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           45 NGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        45 ~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      -...+|++.+.+||++|+++|+++++.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus        15 ~~~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~   94 (169)
T 1yrv_A           15 VPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI   94 (169)
T ss_dssp             CCTTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             cccCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence            45667888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCc-CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHH
Q 018254          125 GLRLNPNL-YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNED  203 (359)
Q Consensus       125 i~rfHPNV-y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~  203 (359)
                      +|  |||| |.+|+|||++|++     .+.|+|++ +|.+||++||+||.+|++  ++|+|.  +|+.+|.++++.|+++
T Consensus        95 i~--HPNI~~~~G~ICL~iL~~-----~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pln~--eaa~l~~~d~~~y~~~  162 (169)
T 1yrv_A           95 PF--HPNVDPHTGQPCIDFLDN-----PEKWNTNY-TLSSILLALQVMLSNPVL--ENPVNL--EAARILVKDESLYRTI  162 (169)
T ss_dssp             CC--CTTBCTTTCCBCCHHHHC-----GGGCCTTC-CHHHHHHHHHHHHTSCCT--TSCSCH--HHHHHHHSCHHHHHHH
T ss_pred             Cc--cCcccCCCCeEeehhhcC-----CcCCCCcC-CHHHHHHHHHHHHhCCCC--CCchhH--HHHHHHHHCHHHHHHH
Confidence            76  9999 8999999999972     37899998 999999999999999999  999998  7899999999999987


Q ss_pred             HHHHH
Q 018254          204 VFILS  208 (359)
Q Consensus       204 v~~~t  208 (359)
                       +.++
T Consensus       163 -~~~v  166 (169)
T 1yrv_A          163 -LRLF  166 (169)
T ss_dssp             -HHHH
T ss_pred             -HHHh
Confidence             5554

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=4e-39  Score=294.30  Aligned_cols=147  Identities=26%  Similarity=0.470  Sum_probs=140.5

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  |||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~--HPN  124 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY--HCN  124 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--BTT
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCc--cce
Confidence            458899999999999999999999999999999999999999999999999999999999999999999999976  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      ||.+|.|||++|.       +.|+|.+ +|.+||++|++||.+|+|  ++|++.  +++.+|.+++..|+++|+.++.++
T Consensus       125 V~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln~--~aa~l~~~d~~~f~~~ar~~t~~y  192 (194)
T 3bzh_A          125 INSQGVICLDILK-------DNWSPAL-TISKVLLSICSLLTDCNP--ADPLVG--SIATQYMTNRAEHDRMARQWTKRY  192 (194)
T ss_dssp             BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ECCCCceechhhh-------ccCCCcC-cHHHHHHHHHHHHhCCCC--ccchhH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            9999999999997       7999998 999999999999999999  999998  679999999999999999998775


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      +
T Consensus       193 a  193 (194)
T 3bzh_A          193 A  193 (194)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=3e-39  Score=295.96  Aligned_cols=150  Identities=24%  Similarity=0.483  Sum_probs=140.3

Q ss_pred             CChhHHHHHHHHHHHHHhc---CCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccc
Q 018254           50 FPAGSHKKIMQEWKILEKH---LPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGL  126 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~---~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~  126 (359)
                      |+..+.+||++|+++|+++   ++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   81 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   81 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence            4566899999999999886   4789999999999999999999999999999999999999999999999999999987


Q ss_pred             ccCCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHH
Q 018254          127 RLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVF  205 (359)
Q Consensus       127 rfHPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~  205 (359)
                        ||||| .+|+|||++|.       +.|+|++ +|.+||++||+||.+|+|  ++|.+.  +++.+|.+++..|+++|+
T Consensus        82 --HPnv~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~p~p--~~p~n~--~aa~~~~~~~~~f~~~a~  147 (201)
T 3k9o_A           82 --HPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA--VVANQYKQNPEMFKQTAR  147 (201)
T ss_dssp             --BTTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHH
T ss_pred             --cCCCcCCCCeeeCcccc-------cCCCCCC-CHHHHHHHHHHHhcCCCC--CCcccH--HHHHHHHHCHHHHHHHHH
Confidence              99999 69999999997       7999998 999999999999999999  999998  789999999999999999


Q ss_pred             HHHHHHHH
Q 018254          206 ILSCKSMT  213 (359)
Q Consensus       206 ~~t~k~m~  213 (359)
                      .++.+++.
T Consensus       148 ~~~~~~a~  155 (201)
T 3k9o_A          148 LWAHVYAG  155 (201)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcc
Confidence            99988664

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=4.1e-39  Score=294.03  Aligned_cols=147  Identities=23%  Similarity=0.499  Sum_probs=137.0

Q ss_pred             hhHHHHHHHHHHHHHhcCC-------------CCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCe
Q 018254           52 AGSHKKIMQEWKILEKHLP-------------ESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPM  118 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p-------------~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~  118 (359)
                      +.+.+||++|++.|+++++             .||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~  110 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPK  110 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCe
Confidence            4588999999999999887             799999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccCCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcH
Q 018254          119 VHYRSFGLRLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKS  197 (359)
Q Consensus       119 V~f~T~i~rfHPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~  197 (359)
                      |+|.|+++  ||||| .+|+|||++|+       +.|+|++ +|.+||++||+||.+|+|  ++|.+.  +++.+|.+++
T Consensus       111 V~F~T~i~--HPNI~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pnp--~~P~n~--~aa~l~~~d~  176 (193)
T 2f4z_A          111 MKFVTKIW--HPNISSQTGAICLDILK-------HEWSPAL-TIRTALLSIQAMLADPVP--TDPQDA--EVAKMMIENH  176 (193)
T ss_dssp             EEESSCCC--BTTBCTTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCH
T ss_pred             EEEecCCc--cCCCcCCCCEEECcccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCH
Confidence            99999986  99999 69999999997       7899998 999999999999999999  999998  7899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018254          198 TAYNEDVFILSCKSM  212 (359)
Q Consensus       198 ~~Yne~v~~~t~k~m  212 (359)
                      +.|+++|+.++.+++
T Consensus       177 ~~f~~~ar~~t~~ya  191 (193)
T 2f4z_A          177 PLFVQTAKLWTETFA  191 (193)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998764

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.1e-38  Score=280.92  Aligned_cols=145  Identities=23%  Similarity=0.448  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEE-EeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           54 SHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v-~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      +.+||++|++.|++++|.||++ .++++|++.|+++|. |+||||+||.|+|+|.||++||++||+|+|.|+++  ||||
T Consensus         5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HPnV   81 (155)
T 1wzv_A            5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIY--HPNV   81 (155)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCC--BTTB
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCc--cCcC
Confidence            5799999999999999999999 889999999999999 99999999999999999999999999999999976  9999


Q ss_pred             CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      |.+|+|||++|+      .+.|+|++ +|.+||++|++||.+|++  ++|++.  +|+.+|.++++.|+++|+.++.+++
T Consensus        82 ~~~G~iCl~iL~------~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~y~~~~r~~~~~~a  150 (155)
T 1wzv_A           82 DENGQICLPIIS------SENWKPCT-KTCQVLEALNVLVNRPNI--REPLRM--DLADLLTQNPELFRKNAEEFTLRFG  150 (155)
T ss_dssp             CTTCBCCCGGGC------TTTCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSH--HHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCeEeecCCC------ccCCCCCC-cHHHHHHHHHHHHhCCCC--CchHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999994      28999998 999999999999999999  999998  7899999999999999999988754

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=3.1e-38  Score=298.95  Aligned_cols=153  Identities=24%  Similarity=0.466  Sum_probs=143.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHhc---CCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecc
Q 018254           47 RDHFPAGSHKKIMQEWKILEKH---LPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS  123 (359)
Q Consensus        47 ~~~~ss~a~kRL~kEl~~L~k~---~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T  123 (359)
                      ...|++.+.+||++|+++|+++   ++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|
T Consensus        51 ~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T  130 (253)
T 3e46_A           51 EFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT  130 (253)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecC
Confidence            3567788999999999999886   4789999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHH
Q 018254          124 FGLRLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNE  202 (359)
Q Consensus       124 ~i~rfHPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne  202 (359)
                      ++|  ||||| .+|+|||++|.       +.|+|.+ +|.+||++||+||.+|+|  ++|.+.  +++.+|.++++.|++
T Consensus       131 ~i~--HPNV~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln~--eaa~l~~~d~~~f~~  196 (253)
T 3e46_A          131 KIW--HPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA--VVANQYKQNPEMFKQ  196 (253)
T ss_dssp             CCC--BTTBCTTTCBBCCGGGT-------TCCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHH
T ss_pred             CCc--cCCccCCCCeeeccccc-------CCCCCCC-CHHHHHHHHHHHhcCCCC--CChhhH--HHHHHHHHCHHHHHH
Confidence            987  99999 69999999997       8999998 999999999999999999  999998  789999999999999


Q ss_pred             HHHHHHHHHHH
Q 018254          203 DVFILSCKSMT  213 (359)
Q Consensus       203 ~v~~~t~k~m~  213 (359)
                      +|+.++.+++.
T Consensus       197 ~ar~~t~~yA~  207 (253)
T 3e46_A          197 TARLWAHVYAG  207 (253)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcc
Confidence            99999988664

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=5.7e-38  Score=281.36  Aligned_cols=151  Identities=23%  Similarity=0.373  Sum_probs=137.2

Q ss_pred             CCChhHHHHHHHHHHHHHh-c-C------CC---CeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCC
Q 018254           49 HFPAGSHKKIMQEWKILEK-H-L------PE---SIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP  116 (359)
Q Consensus        49 ~~ss~a~kRL~kEl~~L~k-~-~------p~---gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~P  116 (359)
                      .|++.+.+||++|++.|++ + +      |.   ++.+.+ +++|++.|+++|.||++|||+||+|+|+|.||++||++|
T Consensus         2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P   81 (172)
T 2y9m_A            2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP   81 (172)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence            4677899999999999998 4 3      44   567788 889999999999999999999999999999999999999


Q ss_pred             Ceeeecc-cccccCCCc-CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHH
Q 018254          117 PMVHYRS-FGLRLNPNL-YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWE  194 (359)
Q Consensus       117 P~V~f~T-~i~rfHPNV-y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~  194 (359)
                      |+|+|.| +++  |||| +.+|+|||++|+      .+.|+|++ +|.+||++||+||.+|++  ++|++.  +|+.+|.
T Consensus        82 P~v~f~t~~i~--HPni~~~~G~iCl~iL~------~~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~n~--~aa~~~~  148 (172)
T 2y9m_A           82 PKISFMQNNIL--HCNVKSATGEICLNILK------PEEWTPVW-DLLHCVHAVWRLLREPVC--DSPLDV--DIGNIIR  148 (172)
T ss_dssp             CEEEECTTSCC--CTTEETTTTEECCGGGS------TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH--HHHHHHT
T ss_pred             CEEEEeeCCee--cCCCcCCCCEEeccccC------CCCCCCcC-cHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHH
Confidence            9999999 876  9999 589999999996      47899998 999999999999999999  999998  7899999


Q ss_pred             H-cHHHHHHHHHHHHHHHH
Q 018254          195 K-KSTAYNEDVFILSCKSM  212 (359)
Q Consensus       195 ~-~~~~Yne~v~~~t~k~m  212 (359)
                      + +++.|+++|+.++.++.
T Consensus       149 ~~d~~~f~~~~~~~~~~~~  167 (172)
T 2y9m_A          149 CGDMSAYQGIVKYFLAERE  167 (172)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHH
Confidence            9 99999999999987654

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.4e-38  Score=294.93  Aligned_cols=146  Identities=26%  Similarity=0.551  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      .+.+||++|++.|++++|.||++.+.++ +++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|  |||
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~--HPN   79 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY--HPN   79 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCC--CSS
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCc--cCc
Confidence            3689999999999999999999999776 5679999999999999999999999999999999999999999977  999


Q ss_pred             cCC-CCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          132 LYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       132 Vy~-~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      ||. +|.|||++|+       +.|+|++ ||.+||++||+||.+|+|  ++|.+.  +++.+|.+++..|+++|+.++.+
T Consensus        80 I~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~~Pln~--eaa~~~~~d~~~f~~~ar~~t~~  147 (215)
T 1tte_A           80 ISSVTGAICLDILR-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDA--EVAQHYLRDRESFNKTAALWTRL  147 (215)
T ss_dssp             SCSSSSCCCSSTTT-------CCSCTTC-CHHHHHHHHHHHHTSCCC--SSCSCH--HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CcCCCCEEECccCC-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHHHHHHHHHH
Confidence            998 9999999997       7999998 999999999999999999  999998  67999999999999999988877


Q ss_pred             HH
Q 018254          211 SM  212 (359)
Q Consensus       211 ~m  212 (359)
                      ++
T Consensus       148 yA  149 (215)
T 1tte_A          148 YA  149 (215)
T ss_dssp             SS
T ss_pred             hc
Confidence            54

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-37  Score=275.56  Aligned_cols=142  Identities=23%  Similarity=0.450  Sum_probs=133.4

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEE-eecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~-~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      +.+.+||++|++.|  ++|+||++. ++++|+..|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+++  ||
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HP   79 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY--HP   79 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCC--BT
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCc--cC
Confidence            45899999999999  578999998 7899999999988 999999999999999999999999999999999976  99


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      |||.+|+|||++|+       +.|+|++ +|.+||++|++||.+|++  ++|++.  +|+.+|.++++.|+++|+.++..
T Consensus        80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~Pn~--~~p~n~--~aa~~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           80 NIDLEGNVCLNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLNK--EAAEVLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCH--HHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             cCCCCCeEEcccch-------hhccCCC-CHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHHHHHHHHhh
Confidence            99999999999997       7899998 999999999999999999  999998  78999999999999999877653

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-37  Score=278.69  Aligned_cols=143  Identities=22%  Similarity=0.422  Sum_probs=134.5

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEE-eecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~-~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      ++.+.+||++|+++|  ++|+||++. ++++|++.|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+++  |
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~--H   98 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY--H   98 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC--B
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc--c
Confidence            467899999999999  678999998 8899999999988 999999999999999999999999999999999976  9


Q ss_pred             CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||||.+|.|||++|+       +.|+|++ +|.+||++|++||.+|++  ++|++.  +|+.+|.++++.|+++|+.++.
T Consensus        99 PNV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~--~aa~~~~~d~~~f~~~v~~~v~  166 (180)
T 2nvu_C           99 PNIDLEGNVALNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLNK--EAAEVLQNNRRLFEQNVQRSMR  166 (180)
T ss_dssp             TTBCTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH--HHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEccccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHHHHHHHHh
Confidence            999999999999997       7899998 999999999999999999  999998  7899999999999999987765


Q ss_pred             H
Q 018254          210 K  210 (359)
Q Consensus       210 k  210 (359)
                      .
T Consensus       167 ~  167 (180)
T 2nvu_C          167 G  167 (180)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=4.3e-38  Score=276.97  Aligned_cols=143  Identities=22%  Similarity=0.408  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      +.+||++|++.|+++   |+++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+++  |||||
T Consensus         3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPni~   77 (152)
T 2onu_A            3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLL--HPNVD   77 (152)
T ss_dssp             CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--CTTBC
T ss_pred             HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCc--cCcCc
Confidence            468999999999874   7899999999999999999999999999999999999999999999999999976  99999


Q ss_pred             -CCCceeeccccccCCCCCCCcccCcccHHHHHHH-HHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          134 -ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS-IQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       134 -~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~s-Iq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                       .+|+|||++|+       +.|+|++ +|.+||++ ||+||.+|++  ++|++.  +|+.+|.++++.|+++|+.++.++
T Consensus        78 ~~~G~iCl~il~-------~~W~p~~-~i~~vl~~ii~~Ll~~Pn~--~~P~n~--~aa~~~~~d~~~y~~~v~~~~~~~  145 (152)
T 2onu_A           78 EASGSVCLDVIN-------QTWTPLY-SLVNVFEVFLPQLLTYPNP--SDPLNS--DAASLLMKDKNIYEEKVKEYVKLY  145 (152)
T ss_dssp             TTTCBBCHHHHH-------HHCCTTC-CHHHHHHTHHHHHHHSCCC--SSCSSH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CcCCeEeccccc-------ccCCCCC-CHHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence             59999999997       7899998 99999999 6999999999  999998  789999999999999999998876


Q ss_pred             HH
Q 018254          212 MT  213 (359)
Q Consensus       212 m~  213 (359)
                      +.
T Consensus       146 a~  147 (152)
T 2onu_A          146 AS  147 (152)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=4.2e-38  Score=277.05  Aligned_cols=146  Identities=25%  Similarity=0.472  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEE-eecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~-~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      +.+||++|++.|++++|.||.+. ++++|++.|+++|. |+||||+||.|+|+|.||++||++||+|+|.|+++  ||||
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--HPnv   79 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIY--HPNI   79 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCC--CTTB
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCc--cccC
Confidence            56899999999999999999855 57889999999998 99999999999999999999999999999999976  9999


Q ss_pred             CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      |.+|+|||++|+      .+.|+|++ +|.+||++|++||.+|++  ++|++.  +++.+|.++++.|+++|+.++.+++
T Consensus        80 ~~~G~iCl~iL~------~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~--~aa~~~~~~~~~f~~~~~~~~~~~a  148 (154)
T 1c4z_D           80 DEKGQVCLPVIS------AENWKPAT-KTDQVIQSLIALVNDPQP--EHPLRA--DLAEEYSKDRKKFCKNAEEFTKKYG  148 (154)
T ss_dssp             CTTCBBCCTTTS------SSSCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCH--HHHHHHHTCSSTTHHHHHHHHTTC-
T ss_pred             CCCCEEECCCCC------CCCCCCCC-cHHHHHHHHHHHHcCCCC--CchhhH--HHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            999999999996      37899999 999999999999999999  999998  6799999999999999999987755


Q ss_pred             H
Q 018254          213 T  213 (359)
Q Consensus       213 ~  213 (359)
                      .
T Consensus       149 ~  149 (154)
T 1c4z_D          149 E  149 (154)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=280.49  Aligned_cols=149  Identities=19%  Similarity=0.415  Sum_probs=134.1

Q ss_pred             CCCCCh--hHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           47 RDHFPA--GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        47 ~~~~ss--~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ...|++  .+.+||++|++.|+.   +||++.+. +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus        17 ~~~ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~   92 (179)
T 2z5d_A           17 RGSMSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK   92 (179)
T ss_dssp             ------CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             cccCCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence            334443  589999999999984   58888887 579999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcCC-CCceeeccccccCCCCCCCcccCcccHHHHHHH-HHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHH
Q 018254          125 GLRLNPNLYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS-IQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNE  202 (359)
Q Consensus       125 i~rfHPNVy~-~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~s-Iq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne  202 (359)
                      ++  |||||. +|+|||++|+       +.|+|++ +|.+||++ |++||.+|+|  ++|.+.  +++.+|.+++++|++
T Consensus        93 i~--HPNV~~~~G~ICL~iL~-------~~WsP~~-ti~~iL~s~I~~Ll~~Pn~--~~p~n~--eaa~~~~~d~~~y~~  158 (179)
T 2z5d_A           93 IF--HPNIDEASGTVCLDVIN-------QTWTALY-DLTNIFESFLPQLLAYPNP--IDPLNG--DAAAMYLHRPEEYKQ  158 (179)
T ss_dssp             CC--BTTBCTTTCBBCHHHHH-------HHCCTTC-CTTHHHHTHHHHHHHSCCC--SSCSCH--HHHHHHHHCHHHHHH
T ss_pred             Cc--cCcCCCCCCeEeccccc-------cCCCCCC-CHHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHH
Confidence            76  999998 9999999997       7899998 99999999 9999999999  999998  789999999999999


Q ss_pred             HHHHHHHHHHH
Q 018254          203 DVFILSCKSMT  213 (359)
Q Consensus       203 ~v~~~t~k~m~  213 (359)
                      +|+.++.+++.
T Consensus       159 ~vr~~~~~~a~  169 (179)
T 2z5d_A          159 KIKEYIQKYAT  169 (179)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHHcc
Confidence            99999987653

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=3.3e-37  Score=276.47  Aligned_cols=154  Identities=19%  Similarity=0.401  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      .+.+||++|++.|+++++ ++   +.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  ||||
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~--HPNi   85 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRIL--HPNV   85 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--BTTB
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcc--cccC
Confidence            467999999999999874 44   35889999999999999999999999999999999999999999999976  9999


Q ss_pred             C-CCCceeeccccccCCCCCCCcccCcccHHHHHHHH-HHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          133 Y-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI-QALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       133 y-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sI-q~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      | .+|+|||++|+       +.|+|++ +|.+||++| |+||.+|++  ++|++.  +|+.+|.++++.|+++|+.++.+
T Consensus        86 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~sil~~ll~~Pn~--~~p~n~--~aa~~~~~d~~~y~~~vr~~~~~  153 (171)
T 1yf9_A           86 DERSGSVCLDVIN-------QTWTPMY-QLENIFDVFLPQLLRYPNP--SDPLNV--QAAHLLHADRVGFDALLREHVST  153 (171)
T ss_dssp             CTTTCBBCHHHHH-------HHCCTTC-CTHHHHHTHHHHHHHSCCS--SCCSCH--HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cccCCeEeccccc-------cCCCCCC-cHHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHH
Confidence            9 59999999997       7899998 999999998 899999999  999998  78999999999999999999987


Q ss_pred             HHH--HHHhCCCCCcH
Q 018254          211 SMT--FLLRNPPKNFE  224 (359)
Q Consensus       211 ~m~--~~l~~pp~~Fe  224 (359)
                      ++.  ....+.|++|+
T Consensus       154 ~a~~~~~~~~~p~~~~  169 (171)
T 1yf9_A          154 HATPQKALESIPEAYR  169 (171)
T ss_dssp             HCCHHHHHHTSCGGGC
T ss_pred             HcChhhHhcCCCcccC
Confidence            642  23456777774

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=8.1e-36  Score=298.49  Aligned_cols=163  Identities=26%  Similarity=0.459  Sum_probs=149.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.+.|||++|++.|++++|.||++.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++  |||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPn   79 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY--HPN   79 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCC--CTT
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccc--ccc
Confidence            458999999999999999999999999999999999999999999999999999999999999999999999976  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      |+.+|.|||++|.       +.|+|++ +|.+||++|++||.+|+|  ++|++.  +++.+|.+|+..|+++|+.++.++
T Consensus        80 v~~~G~iCl~il~-------~~W~p~~-~i~~vL~~i~~ll~~pnp--~~p~n~--~aa~~~~~d~~~y~~~~~~~~~~~  147 (399)
T 4ddg_A           80 INSNGSISLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVP--EIARIYKTDREKYNRIAREWTQKY  147 (399)
T ss_dssp             BCTTCBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEeCcccc-------cCCCccc-cHHHHHHHHHHHHcCCCC--CchhhH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            9999999999997       7999998 999999999999999999  999998  789999999999999999998875


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHH
Q 018254          212 MTFLLRNPPKNFEGFVRSHFRE  233 (359)
Q Consensus       212 m~~~l~~pp~~Fe~~V~~hf~~  233 (359)
                      +.     ++..+.+.|.+..+.
T Consensus       148 a~-----~~v~~De~i~~q~~~  164 (399)
T 4ddg_A          148 AM-----GGSAYDEAIMAQQDR  164 (399)
T ss_dssp             TS-----CTTHHHHHHHHHHHH
T ss_pred             hc-----cccchhHHHHHHHHH
Confidence            53     445555555554333

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=8.2e-36  Score=257.97  Aligned_cols=117  Identities=25%  Similarity=0.494  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.+.+||++|+++|++++|.||++.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++ ++|||
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i-~~HPn   97 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKP-PKHTH   97 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC-CCCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCC-CCCCc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999996 24999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCC
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP  177 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~P  177 (359)
                      ||.+|+|||++|+       +.|+|++ +|.+||++||+||.+|+.
T Consensus        98 v~~~G~ICl~iL~-------~~WsP~~-ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           98 VYSNGDICLSVLG-------DDYNPSL-SISGLILSIISMLSSAKE  135 (136)
T ss_dssp             BCTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCEEECcccc-------CCCCCCC-cHHHHHHHHHHHHhCcCc
Confidence            9999999999997       7899998 999999999999988753

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=5.7e-36  Score=272.52  Aligned_cols=143  Identities=22%  Similarity=0.408  Sum_probs=134.1

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEE----eecCCcc---eEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecc
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVR----VYENRID---LLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS  123 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~----~~e~~l~---~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T  123 (359)
                      .+.+.+||++|+++|+  +|.||++.    ++++|++   .|+++|. |++|||+||.|+|+|.||++||++||+|+|.|
T Consensus        27 ~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t  103 (190)
T 3o2u_A           27 LSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLK  103 (190)
T ss_dssp             CCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECS
T ss_pred             ccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEec
Confidence            3678999999999998  78899998    8899999   9999997 88899999999999999999999999999999


Q ss_pred             cccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHH
Q 018254          124 FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNED  203 (359)
Q Consensus       124 ~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~  203 (359)
                      +++  |||||.+|+|||++|+       +.|+|.+ +|.+||++|++||.+|+|  ++|+|.  +|+.+|.+|++.|+++
T Consensus       104 ~i~--HPnV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~pln~--~aa~~~~~d~~~f~~~  169 (190)
T 3o2u_A          104 KIF--HPNIDLKGNVCLNILR-------EDWSPAL-DLQSIITGLLFLFLEPNP--NDPLNK--DAAKLLCEGEKEFAEA  169 (190)
T ss_dssp             CCC--CTTBCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH--HHHHHHHTCHHHHHHH
T ss_pred             Ccc--cCCCCCCCeEechhcc-------CCCCCCC-CHHHHHHHHHHHHhCCCC--CcchhH--HHHHHHHHCHHHHHHH
Confidence            976  9999999999999997       8999998 999999999999999999  999998  7899999999999999


Q ss_pred             HHHHHHH
Q 018254          204 VFILSCK  210 (359)
Q Consensus       204 v~~~t~k  210 (359)
                      |+.++..
T Consensus       170 ar~~~~~  176 (190)
T 3o2u_A          170 VRLTMSG  176 (190)
T ss_dssp             HHHHHBT
T ss_pred             HHHHHHh
Confidence            9887643

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=5.4e-36  Score=255.44  Aligned_cols=116  Identities=27%  Similarity=0.507  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      .+.+||++|+++|++++|.||++.++++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++ ++||||
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i-~~HPnv   84 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKP-PKHTHV   84 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC-CCBTTB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCC-CCCCcC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999996 249999


Q ss_pred             CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCC
Q 018254          133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP  177 (359)
Q Consensus       133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~P  177 (359)
                      |.+|+|||++|+       +.|+|++ +|.+||++||+||.+|++
T Consensus        85 ~~~G~iCl~iL~-------~~W~P~~-~i~~vl~si~~ll~~p~~  121 (125)
T 2fo3_A           85 YSNGDICLSLLG-------DDYNPSL-SISGLVLSIISMLSSAKE  121 (125)
T ss_dssp             CTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHC----
T ss_pred             CCCCEEEchhcC-------CCCCCCC-cHHHHHHHHHHHHhCccc
Confidence            999999999997       7999998 999999999999998876

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=5.4e-36  Score=267.11  Aligned_cols=146  Identities=20%  Similarity=0.354  Sum_probs=131.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhcC------------CCCeEEEeecCCcceEEEEEecCCCCCcC--CCeEEEEEeCCCCCC
Q 018254           48 DHFPAGSHKKIMQEWKILEKHL------------PESIFVRVYENRIDLLRAVIVGTAGTPYH--DGLFFFDLAFPADYP  113 (359)
Q Consensus        48 ~~~ss~a~kRL~kEl~~L~k~~------------p~gI~v~~~e~~l~~w~~~I~GP~gTPYe--gG~F~f~I~fP~dYP  113 (359)
                      ..|++.+.|||++|++.|++++            +.+|++.++++|++.|+++|.||+||||+  ||.|+|+|.||++||
T Consensus         3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP   82 (167)
T 4ds2_A            3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP   82 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred             ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence            3566678999999999999987            78999999999999999999999999999  999999999999999


Q ss_pred             CCCCeeeecccccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHH-HHHHHhccCCCCCCCCCCCCchhhhh
Q 018254          114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLV-SIQALVLNEKPYFNEPGHGMWPGRSI  192 (359)
Q Consensus       114 ~~PP~V~f~T~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~-sIq~Ll~~p~Py~neP~~~~~~a~~~  192 (359)
                      ++||+|+|.|+++  |||||.+|+|||++|+       +.|+|++ +|.+||+ .|++|+...+|..++|+|.  +|+.+
T Consensus        83 ~~pP~v~f~t~i~--HPnv~~~G~iCl~il~-------~~W~p~~-~i~~vll~~l~~l~~~~~pn~~~p~n~--eaa~l  150 (167)
T 4ds2_A           83 HEPPTVRFVTPVY--SPLVTGEGGICDRMVN-------DFWTPDQ-HASDVIKLVLDRVFSQYKSRRDDDVNP--EARHY  150 (167)
T ss_dssp             TSCCEEEESSCCC--CSSCCTTSCCCTHHHH-------TTCCTTS-CHHHHHHHHHHHHHTSTTSCCSCCCCH--HHHHH
T ss_pred             CCCCEEEEeCCcc--cccCCCCCEEEcccCc-------CCCCCCC-ChHHHHHHHHHHHHhcCCCCCcchHhH--HHHHH
Confidence            9999999999976  9999999999999997       8999999 8998754 6778887633333999988  78999


Q ss_pred             HHHcHHHHHHHHH
Q 018254          193 WEKKSTAYNEDVF  205 (359)
Q Consensus       193 ~~~~~~~Yne~v~  205 (359)
                      |.+|+++|+++|+
T Consensus       151 ~~~d~~~f~~~vr  163 (167)
T 4ds2_A          151 LEKFPQDFAARVR  163 (167)
T ss_dssp             HHHCHHHHHHHHT
T ss_pred             HHHCHHHHHHHHh
Confidence            9999999999986

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-36  Score=260.88  Aligned_cols=118  Identities=27%  Similarity=0.529  Sum_probs=109.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHhcCCCCeEEE--eecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           47 RDHFPAGSHKKIMQEWKILEKHLPESIFVR--VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        47 ~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~--~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ...|++. .+||++|+++|++++|+||++.  ++++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+
T Consensus        17 ~~~Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           17 RGSMASM-QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             GGGGTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             chhccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence            4445543 4999999999999999999976  889999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhc
Q 018254          125 GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL  173 (359)
Q Consensus       125 i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~  173 (359)
                      +++||||||.+|+|||++|+       ++|+|++ +|.+||++||+||.
T Consensus        96 i~~~HPNV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~slL~  136 (136)
T 2a7l_A           96 NIPVHPHVYSNGHICLSILT-------EDWSPAL-SVQSVCLSIISMLS  136 (136)
T ss_dssp             CCCCBTTBCTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHTC
T ss_pred             CcCCCccCCCCCeEEchhcC-------CCCCCCC-cHHHHHHHHHHHhC
Confidence            98899999999999999997       8999999 99999999999983

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=6.7e-35  Score=258.00  Aligned_cols=135  Identities=17%  Similarity=0.307  Sum_probs=119.7

Q ss_pred             CCCCChhHHHHHHHHHHHHHhc-CCCCeEEEeec-C--CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeec
Q 018254           47 RDHFPAGSHKKIMQEWKILEKH-LPESIFVRVYE-N--RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYR  122 (359)
Q Consensus        47 ~~~~ss~a~kRL~kEl~~L~k~-~p~gI~v~~~e-~--~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~  122 (359)
                      .......+.+||++|++.|+++ ++.||++.+.. +  |++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.
T Consensus        15 ~~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~   94 (156)
T 2q0v_A           15 YFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFD   94 (156)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             CCcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEE
Confidence            3344566899999999999998 78899999843 3  599999999999999999999999999999999999999999


Q ss_pred             ccccccCCCcCCCCce---eeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHc
Q 018254          123 SFGLRLNPNLYANGRV---CLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKK  196 (359)
Q Consensus       123 T~i~rfHPNVy~~GkV---CLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~  196 (359)
                      |+++  |||||.+|+|   ||++|+        .|+|++ +|.+||++||+||.+|++  ++|.+.  +|+.+|.+|
T Consensus        95 t~i~--HPNV~~~G~icisCL~iL~--------~WsP~~-ti~~vL~sI~~ll~~Pn~--~~p~n~--~aa~~y~~n  156 (156)
T 2q0v_A           95 TKIE--MSCVDNCGRVIKNNLHILK--------NWNRNY-TIETILISLRQEMLSSAN--KRLPQP--NEGEVYSNN  156 (156)
T ss_dssp             BCCC--CTTBCTTSBBCGGGSHHHH--------TCCTTC-CHHHHHHHHHHHTTSTTT--TTCCCC--CTTCBC---
T ss_pred             cccc--cCCCccCCeEehhhccccc--------CCCCcC-cHHHHHHHHHHHHhCCCC--CCcCCh--HHHHHhhhC
Confidence            9986  9999999999   899996        499998 999999999999999999  999998  567777653

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.5e-34  Score=261.07  Aligned_cols=119  Identities=24%  Similarity=0.475  Sum_probs=104.3

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP  130 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP  130 (359)
                      ++.+.+||++|++.|++++|.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+    ||
T Consensus        12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~----~~   87 (187)
T 2f4w_A           12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP----NG   87 (187)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC----CS
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC----Cc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999998    99


Q ss_pred             CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCC
Q 018254          131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPY  178 (359)
Q Consensus       131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py  178 (359)
                      |++.+|+|||++|++|    .+.|+|++ +|.+||++|++||.+|+|.
T Consensus        88 ~~~~~G~ICL~iL~~~----~~~W~P~~-ti~~vL~si~sll~~p~p~  130 (187)
T 2f4w_A           88 RFKCNTRLCLSITDFH----PDTWNPAW-SVSTILTGLLSFMVEKGPT  130 (187)
T ss_dssp             SBCTTSCBC--------------CCTTC-CHHHHHHHHHHHHHSCCCC
T ss_pred             eeccCCeEeeeccccC----ccCCCCcC-cHHHHHHHHHHHhcCCCCC
Confidence            9999999999999754    37899998 9999999999999999983

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=2.1e-34  Score=255.87  Aligned_cols=127  Identities=17%  Similarity=0.304  Sum_probs=115.5

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCC-eEEEe-ecCC--cceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccc
Q 018254           50 FPAGSHKKIMQEWKILEKHLPES-IFVRV-YENR--IDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFG  125 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~g-I~v~~-~e~~--l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i  125 (359)
                      +...+.+||++|+++|++++++| +.+.+ +++|  ++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++
T Consensus        22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i  101 (160)
T 2a4d_A           22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI  101 (160)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             eechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCc
Confidence            44668999999999999999998 67776 5665  88999999999999999999999999999999999999999998


Q ss_pred             cccCCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhc-cCCCCCCCCCCCC
Q 018254          126 LRLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL-NEKPYFNEPGHGM  186 (359)
Q Consensus       126 ~rfHPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~-~p~Py~neP~~~~  186 (359)
                      +  ||||| .+|+|||++|++|     +.|+|++ +|.+||++||+||. .|++  ++|.+.+
T Consensus       102 ~--HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--~~P~n~e  154 (160)
T 2a4d_A          102 N--MNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQPPE  154 (160)
T ss_dssp             C--CTTBCTTTCBBCGGGSHHH-----HTCCTTC-CHHHHHHHHHHHHTSTTTT--TCCCCCT
T ss_pred             e--eCCEECCCCEEehhhcCCc-----cCCCccC-cHHHHHHHHHHHHccCCCC--CCCCChh
Confidence            6  99999 7999999999765     6899998 99999999999995 5888  9999983

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=258.55  Aligned_cols=148  Identities=16%  Similarity=0.263  Sum_probs=127.4

Q ss_pred             eeeCCCCCCccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCC-eEEEe-ecCC--cceEEEEEecCCCCCcCCCe
Q 018254           26 DVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPES-IFVRV-YENR--IDLLRAVIVGTAGTPYHDGL  101 (359)
Q Consensus        26 ~~v~~~~dh~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~g-I~v~~-~e~~--l~~w~~~I~GP~gTPYegG~  101 (359)
                      +++++.+|||+........   ......+.+||++|++.|++++++| +.+.+ +++|  ++.|+++|.||++|||+||+
T Consensus        11 ~~~s~~~~~~~~~p~~~~~---~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~   87 (170)
T 2hlw_A           11 KSQSKLSDEGRLEPRKFHC---KGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRI   87 (170)
T ss_dssp             CCSCSSSCSSCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCC
T ss_pred             ccccccccccccCCccccC---CcccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcE
Confidence            4557888999986643221   1133557899999999999999998 56776 5665  89999999999999999999


Q ss_pred             EEEEEeCCCCCCCCCCeeeecccccccCCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc-CCCCC
Q 018254          102 FFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN-EKPYF  179 (359)
Q Consensus       102 F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~-p~Py~  179 (359)
                      |+|+|.||++||++||+|+|.|+++  ||||| .+|+|||++|++|     +.|+|++ +|.+||++||+||.+ |++  
T Consensus        88 f~l~i~fp~~YP~~PP~v~F~T~i~--HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--  157 (170)
T 2hlw_A           88 YSLKIECGPKYPEAPPFVRFVTKIN--MNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--  157 (170)
T ss_dssp             BCEEEECCSSCTTSCCEEEECBCCC--CSSBCSSSCBBCTTTCHHH-----HTCCSSC-CHHHHHHHHHHHHHSTTTS--
T ss_pred             EEEEEECCCCCCCCCCeeEEecccc--cCCEeCCCCEEEhhhcCCC-----CCCCccC-cHHHHHHHHHHHHccCCCC--
Confidence            9999999999999999999999986  99999 8999999999765     6899998 999999999999975 788  


Q ss_pred             CCCCCCC
Q 018254          180 NEPGHGM  186 (359)
Q Consensus       180 neP~~~~  186 (359)
                      ++|.+.+
T Consensus       158 ~~P~n~e  164 (170)
T 2hlw_A          158 KLPQPPE  164 (170)
T ss_dssp             SSCCCSS
T ss_pred             CCCCCcc
Confidence            9999983

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=2.5e-34  Score=261.01  Aligned_cols=150  Identities=17%  Similarity=0.332  Sum_probs=126.2

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHhcC---CCCeEEEeecCCcceEEEEEecC-CCCCcCC-----------CeEEEEEe
Q 018254           43 KKNGRDHFPAGSHKKIMQEWKILEKHL---PESIFVRVYENRIDLLRAVIVGT-AGTPYHD-----------GLFFFDLA  107 (359)
Q Consensus        43 ~~~~~~~~ss~a~kRL~kEl~~L~k~~---p~gI~v~~~e~~l~~w~~~I~GP-~gTPYeg-----------G~F~f~I~  107 (359)
                      ...+...++..+.+||++|+++|++++   +.+|.+.+.++|++.|+++|.|| ++|||+|           |.|.|+|.
T Consensus        17 ~~~g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~   96 (186)
T 1zuo_A           17 RGSGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFS   96 (186)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             ccCCcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEE
Confidence            344566778889999999999999988   68999999999999999999998 9999998           89999999


Q ss_pred             CCCCCCCCCCeeeecccccccCC-CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCC
Q 018254          108 FPADYPNHPPMVHYRSFGLRLNP-NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGM  186 (359)
Q Consensus       108 fP~dYP~~PP~V~f~T~i~rfHP-NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~  186 (359)
                      ||++||++||+|+|.|+++  || |||.+|.|||++|.      .+.|+|++ +|.+||++|++||.+|++         
T Consensus        97 fp~~YP~~PP~V~f~tpi~--hPnnV~~~G~ICL~iL~------~~~WsP~~-ti~~VL~sI~slL~~p~a---------  158 (186)
T 1zuo_A           97 FKDNFPFDPPFVRVVLPVL--SGGYVLGGGALCMELLT------KQGWSSAY-SIESVIMQINATLVKGKA---------  158 (186)
T ss_dssp             CCTTTTSSCCEEEEEESCE--ESTTBCGGGBBCCGGGS------TTTCCTTS-CHHHHHHHHHHHHHHTTC---------
T ss_pred             CCCCCCCCCCeEEEeCCcc--CCCccCCCCcEEeccCC------CCCCCCcC-cHHHHHHHHHHHHcCCCh---------
Confidence            9999999999999999976  99 69999999999996      37899998 999999999999998865         


Q ss_pred             chhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254          187 WPGRSIWEKKSTAYNEDVFILSCKSMT  213 (359)
Q Consensus       187 ~~a~~~~~~~~~~Yne~v~~~t~k~m~  213 (359)
                         ...+..+..+|.+.++..+.+.+.
T Consensus       159 ---~~~~~~~~~~Y~~~~~~~~~~~~~  182 (186)
T 1zuo_A          159 ---RVQFGANKNQYNLARAQQSYNSIV  182 (186)
T ss_dssp             ---EECTTCCTTCCCHHHHHHHHHHHH
T ss_pred             ---hHhhccCHHHHhHHHHHHHHHHHH
Confidence               222334456787777776666554

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=9.2e-34  Score=245.45  Aligned_cols=121  Identities=17%  Similarity=0.280  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHhc-CCCCeEEEeec-C--CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccccc
Q 018254           53 GSHKKIMQEWKILEKH-LPESIFVRVYE-N--RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL  128 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~-~p~gI~v~~~e-~--~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rf  128 (359)
                      .+.+||++|+++|+++ ++.||++.+.+ +  |++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++  
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~--   83 (138)
T 1jat_B            6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN--   83 (138)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC--
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccc--
Confidence            4679999999999998 78899999843 4  4899999999999999999999999999999999999999999987  


Q ss_pred             CCCcCCC-Cce--eeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCC
Q 018254          129 NPNLYAN-GRV--CLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGM  186 (359)
Q Consensus       129 HPNVy~~-GkV--CLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~  186 (359)
                      |||||.+ |+|  ||++|+        .|+|++ +|.+||++||+||.+|++  ++|.+..
T Consensus        84 HPnv~~~~G~i~~cL~~l~--------~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~~~~  133 (138)
T 1jat_B           84 LPCVNPTTGEVQTDFHTLR--------DWKRAY-TMETLLLDLRKEMATPAN--KKLRQPK  133 (138)
T ss_dssp             CTTBCTTTCBBCTTSHHHH--------TCCTTC-CHHHHHHHHHHHHTSHHH--HTSCCCC
T ss_pred             cCCEeCCCCEEeeecccCC--------CCCCcC-cHHHHHHHHHHHHcCCCC--CCCCCcc
Confidence            9999976 999  999994        699998 999999999999999999  9999873

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.89  E-value=5.4e-24  Score=188.98  Aligned_cols=102  Identities=18%  Similarity=0.368  Sum_probs=91.8

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCC----------eEEEEEeCCCCCCCCCCeee
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDG----------LFFFDLAFPADYPNHPPMVH  120 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG----------~F~f~I~fP~dYP~~PP~V~  120 (359)
                      ...|.+||++|++.|++      ++.+..+++..|.++|.||+||||+||          .|.+.|.||.+||.+||+|+
T Consensus        30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~  103 (172)
T 2z6o_A           30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA  103 (172)
T ss_dssp             THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred             cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence            35689999999999998      467778899999999999999999999          99999999999999999999


Q ss_pred             eccc-ccccCCCcCCCCceeeccccc--cCCCCCCCcccCcccHHHHHH
Q 018254          121 YRSF-GLRLNPNLYANGRVCLSLLNT--WTGKKSEKWNPDESTVLQVLV  166 (359)
Q Consensus       121 f~T~-i~rfHPNVy~~GkVCLslL~t--w~G~~~e~WsP~~stI~qVL~  166 (359)
                      |.+. ++  |||+|.+|+|||++|..  |     ..|+|.+ +|.++|.
T Consensus       104 F~~~~~~--hpnmY~~G~ICLdIL~kp~W-----s~~~P~~-~IahiL~  144 (172)
T 2z6o_A          104 VPELDGK--TAKMYRGGKICLTDHFKPLW-----ARNVPKF-GLAHLMA  144 (172)
T ss_dssp             CGGGTTT--CSSBCTTSBBCCCTTHHHHH-----HHHTTSC-CHHHHHH
T ss_pred             eCCCCCC--CCCCCCCCcEechhhccccc-----cccCCcc-CHHHHHh
Confidence            9998 65  99999999999999942  3     3566999 9999874

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.64  E-value=5e-16  Score=138.01  Aligned_cols=115  Identities=18%  Similarity=0.271  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhcCC---CCeEEEeecCCcceEEEEEecCCCCCcCCCe---EEEEEeCCCCCCCCCCeeeeccc---c
Q 018254           55 HKKIMQEWKILEKHLP---ESIFVRVYENRIDLLRAVIVGTAGTPYHDGL---FFFDLAFPADYPNHPPMVHYRSF---G  125 (359)
Q Consensus        55 ~kRL~kEl~~L~k~~p---~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~---F~f~I~fP~dYP~~PP~V~f~T~---i  125 (359)
                      .+|..+|+..+.+.-|   ....+...++....+-..+.|+-.++|+||.   |.+.|.||.+||++||.|.|.+.   +
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m  109 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  109 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence            3566778877766555   2344455667677778888888889999999   88999999999999999988651   0


Q ss_pred             ------cccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCC
Q 018254          126 ------LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP  177 (359)
Q Consensus       126 ------~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~P  177 (359)
                            ...||||+.+|+||+++|.        .|+|..|+|.+||.+|+++|.+|+|
T Consensus       110 ~~~~~~I~~hpnVD~~G~I~lpyL~--------~W~p~~s~L~~ll~~l~~lf~ep~~  159 (162)
T 3r3q_A          110 NTISSSLPIQEYIDSNGWIALPILH--------AWDPAAMNLIMVVQELMSLLHEPPQ  159 (162)
T ss_dssp             TTSCTTSTHHHHBCTTSBBCCGGGG--------SCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred             cccccccCCCCCCCCCCcEeCcccc--------cCCCCcCcHHHHHHHHHHHhcCCCC
Confidence                  1249999999999999995        6999666999999999999999988

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.64  E-value=5.1e-17  Score=141.73  Aligned_cols=84  Identities=18%  Similarity=0.387  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCC----------eEEEEEeCCCCCCCCCCeeee
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDG----------LFFFDLAFPADYPNHPPMVHY  121 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG----------~F~f~I~fP~dYP~~PP~V~f  121 (359)
                      ..|..||..|+..|.+      ||....++-..|.+++.||+||+|.|+          .|.+.|.||.+||..||.|.|
T Consensus        33 ~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F  106 (168)
T 3kpa_A           33 DKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL  106 (168)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence            5699999999999866      444455566789999999999999999          899999999999999999999


Q ss_pred             ccc-ccccCCCcCCCCceeeccc
Q 018254          122 RSF-GLRLNPNLYANGRVCLSLL  143 (359)
Q Consensus       122 ~T~-i~rfHPNVy~~GkVCLslL  143 (359)
                      .+. ++  |||+|.+|+|||+++
T Consensus       107 p~ldgk--t~kmYr~GkICLdIh  127 (168)
T 3kpa_A          107 PELEGK--TVKMYRGGKICMTTH  127 (168)
T ss_dssp             GGGTTT--CSSEETTTEECCCTT
T ss_pred             ccccCc--CccccCCCcEEeccc
Confidence            996 55  999999999999886

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.34  E-value=3.4e-12  Score=111.61  Aligned_cols=107  Identities=20%  Similarity=0.379  Sum_probs=82.7

Q ss_pred             HHHHHHHHhcCCC-CeEEEee---cCCcceEEEEEecCCCCCcCCCeEEE--EEeCCCCCCCCCCeeeeccc----cccc
Q 018254           59 MQEWKILEKHLPE-SIFVRVY---ENRIDLLRAVIVGTAGTPYHDGLFFF--DLAFPADYPNHPPMVHYRSF----GLRL  128 (359)
Q Consensus        59 ~kEl~~L~k~~p~-gI~v~~~---e~~l~~w~~~I~GP~gTPYegG~F~f--~I~fP~dYP~~PP~V~f~T~----i~rf  128 (359)
                      .+|...+.+.-|. .......   ..++..|.++|.    .+|+|+.|.+  .|.||.+||+.||.| |.++    ..+.
T Consensus        26 ~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~  100 (146)
T 3obq_A           26 VRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKT  100 (146)
T ss_dssp             HHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECC
T ss_pred             HHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECC
Confidence            4566666665553 1112222   256888899997    7899999985  999999999999999 5554    1246


Q ss_pred             CCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCC
Q 018254          129 NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPY  178 (359)
Q Consensus       129 HPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py  178 (359)
                      ||||+.+|+||++.|.        +|++..|+|.++|.+++.+|...-|.
T Consensus       101 ~~~Vd~~G~i~lpyL~--------~W~~~~snL~~ll~~l~~~F~~epPv  142 (146)
T 3obq_A          101 GKHVDANGKIYLPYLH--------EWKHPQSDLLGLIQVMIVVFGDEPPV  142 (146)
T ss_dssp             BTTBCTTCBBCCHHHH--------TCCTTTCCHHHHHHHHHHHHHHSCSE
T ss_pred             CCCCCCCCCEeccccc--------ccCCCCCCHHHHHHHHHHHHhhCCCC
Confidence            9999999999999996        48886679999999999999876553

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.23  E-value=0.11  Score=42.95  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS  123 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T  123 (359)
                      ...+...|+..|+.-.++.+.+.  ......+++.|..-.+..-+.-.+.+.|.||++||..||.+...+
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            45667889999988777665442  222345555554222222233478899999999999999998755

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=93.95  E-value=0.26  Score=40.59  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeecCC--cceEEEEEecCCCCCcC--CCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           57 KIMQEWKILEKHLPESIFVRVYENR--IDLLRAVIVGTAGTPYH--DGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        57 RL~kEl~~L~k~~p~gI~v~~~e~~--l~~w~~~I~GP~gTPYe--gG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ....|+..|+.-.++.+.+.....+  ...+.+.|..+.+..-+  .-.+.+.|.||++||..||.+...+.
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            4678999998877776665432222  23344455422221111  24678899999999999999987764

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=92.57  E-value=0.46  Score=39.62  Aligned_cols=69  Identities=7%  Similarity=0.105  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeec-------CCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYE-------NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e-------~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ...+-..|+..|+.-.++.+.+. ..       +....+.+.|....+ +-..-.+.+.|.+|++||..||.|...+.
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~-~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           11 YYEIQCNELEAIRSIYMDDFTDL-TKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHHTTSSSSEECC-STTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             hHHHHHHHHHHHHHHChhhheec-ccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            34556788888887666554322 21       123456666663322 11234778999999999999999987653

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.86  E-value=0.39  Score=39.55  Aligned_cols=66  Identities=18%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhcCCC--CeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecc
Q 018254           57 KIMQEWKILEKHLPE--SIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS  123 (359)
Q Consensus        57 RL~kEl~~L~k~~p~--gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T  123 (359)
                      ....|+..|+.-.++  .+.+.- ...+...+++.|.. .+..=..-.+.+.|.||++||..||.+...+
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            456789888775543  443211 11223466666653 2210012368899999999999999987654

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=90.56  E-value=1.6  Score=36.03  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecC-----CcceEEEEEecCCC-C-CcCCCeEEEEEeCCCCCCCCCCeeeecc
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYEN-----RIDLLRAVIVGTAG-T-PYHDGLFFFDLAFPADYPNHPPMVHYRS  123 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~-----~l~~w~~~I~GP~g-T-PYegG~F~f~I~fP~dYP~~PP~V~f~T  123 (359)
                      ....+...|+..|+.-.++.+.+.....     .....++.|. |.+ . .-..-.+.+.|.||++||..||.|...+
T Consensus        10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             chHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            3456778999999887776654422111     1234455554 222 1 0012468899999999999999998743

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=85.17  E-value=6.2  Score=35.31  Aligned_cols=85  Identities=12%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCC
Q 018254           56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYAN  135 (359)
Q Consensus        56 kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~  135 (359)
                      .+|.+|+..|-=+.     +.-...++...++.+....     |-...+.|.++.+||.+||.+.-.-|.- |  +    
T Consensus         4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~~-~--~----   66 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPVP-F--C----   66 (186)
T ss_dssp             CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSSC-C--C----
T ss_pred             HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCCC-c--c----
Confidence            46888998873221     2223456788888887543     5678899999999999999987766631 1  1    


Q ss_pred             CceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc
Q 018254          136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN  174 (359)
Q Consensus       136 GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~  174 (359)
                                      -.|+|.. ++..++...+..+..
T Consensus        67 ----------------~~w~~~s-sL~~v~~qF~~~Le~   88 (186)
T 3zqs_A           67 ----------------ASWTPQS-SLISIYSQFLAAIES   88 (186)
T ss_dssp             ----------------CCCCTTC-CHHHHHHHHHHHHHH
T ss_pred             ----------------cccCCCc-cHHHHHHHHHHHHHH
Confidence                            3688874 898888888877753

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=83.89  E-value=3.4  Score=35.26  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHHhcCC--CCeEEEeec-------------CC-c--ceEEEEEecCCCCCcCCCeEEEEEeCCCCCCC
Q 018254           53 GSHKKIMQEWKILEKHLP--ESIFVRVYE-------------NR-I--DLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN  114 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p--~gI~v~~~e-------------~~-l--~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~  114 (359)
                      ....+-..|+..|+.-.|  +-+.+.-..             .+ .  ..+++.|.- .+ +  ...+.+.|.+|.+||.
T Consensus        14 ~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~-~~-~--~~~i~L~v~lP~~YP~   89 (154)
T 2daw_A           14 ESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQI-EE-P--KVKIDLQVTMPHSYPY   89 (154)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEE-TT-T--TEEEEEEEEECSSTTS
T ss_pred             hhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEec-CC-C--CceEEEEEEcCCCCCC
Confidence            345566778888887666  555442100             01 1  234433332 11 1  1378999999999999


Q ss_pred             CCCeeeeccc
Q 018254          115 HPPMVHYRSF  124 (359)
Q Consensus       115 ~PP~V~f~T~  124 (359)
                      .||.+...+.
T Consensus        90 ~~P~i~l~~~   99 (154)
T 2daw_A           90 LALQLFGRSS   99 (154)
T ss_dssp             SCCEEEEECS
T ss_pred             CCCcEEEEeC
Confidence            9999986654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	4e-25
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	1e-24
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	3e-24
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	2e-23
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-22
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-22
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	4e-22
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	2e-19
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-19
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-19
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	5e-19
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	5e-19
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-18
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-18
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-18
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	5e-18
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	2e-17
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	2e-16
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	3e-16
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	3e-15
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-15
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-14
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-13
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-12
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	2e-12
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	3e-12
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	7e-11
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	3e-10
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	4e-09
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	5e-08

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (241), Expect = 4e-25
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFF--DLAFPADYP 113
            +       L K L   +   V+ +        + GT   PY    +     L     YP
Sbjct: 20  VRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYP 79

Query: 114 NHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
            +PP+   +      ++   ++ ANG++ L  L+         W   +S +L ++  +  
Sbjct: 80  YNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHE--------WKHPQSDLLGLIQVMIV 131

Query: 171 LVLNEKPYF 179
           +  +E P F
Sbjct: 132 VFGDEPPVF 140

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (236), Expect = 1e-24
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 10/122 (8%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVY--ENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
           A   K++ +E   L+   P  + +     +N I      + G  GT Y    F     F 
Sbjct: 2   ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query: 110 ADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           + YP   P V +    + ++P++Y+NG +CLS+L        E W+P   +V  V +SI 
Sbjct: 62  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT-------EDWSP-ALSVQSVCLSII 113

Query: 170 AL 171
           ++
Sbjct: 114 SM 115

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 94.5 bits (234), Expect = 3e-24
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 14/149 (9%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+I +E + L +  P         + +   +A I+G   +PY  G+FF  + FP DYP  
Sbjct: 4   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 116 PPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175
           PP V + +     +PN+ +NG +CL +L +                 +VL+SI +L+ + 
Sbjct: 64  PPKVAFTTR--IYHPNINSNGSICLDILRSQWSPALTIS--------KVLLSICSLLCDP 113

Query: 176 KPYFNEPGHGMWPGRSIWEKKSTAYNEDV 204
            P              I++     YN+  
Sbjct: 114 NPDDPLVPE----IARIYKTDRERYNQLA 138

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 93.3 bits (231), Expect = 2e-23
 Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + +++ Q++  ++K     I      + I     V+ G   TPY  G +   L FP ++P
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 61

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
             PP ++  +   R       N R+CLS+ +       + WNP   +V  +L  + + ++
Sbjct: 62  FKPPSIYMITPNGRFKC----NTRLCLSITDFH----PDTWNPA-WSVSTILTGLLSFMV 112

Query: 174 NEKPYFNEPGHGMWPGRSIWEKKSTAYN 201
            + P         +  +     +S A+N
Sbjct: 113 EKGPTLGSIETSDF-TKRQLAVQSLAFN 139

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 88.6 bits (219), Expect = 2e-22
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 58  IMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPP 117
           I +E      + P +  + V+ N I +     VG   T Y + ++   + FP DYP  PP
Sbjct: 3   IQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP 62

Query: 118 MVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           +V++       + ++Y+NG +CLSLL        + +NP   ++  +++SI ++
Sbjct: 63  IVYFLQKP-PKHTHVYSNGDICLSLLG-------DDYNPS-LSISGLVLSIISM 107

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 90.3 bits (223), Expect = 2e-22
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 54  SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
           + K++++E + L K  P  I      EN I +   +I G   TPY DG+F   L FP DY
Sbjct: 4   AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 63

Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKS------EKWNPDESTVLQVLV 166
           P  PP + +      L+PN+Y NG VC+S+L++     +      E+W+P   +V ++L+
Sbjct: 64  PLSPPKLTFTPS--ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPV-QSVEKILL 120

Query: 167 SIQALVLN---EKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTF 214
           S+ +++     E     +          +W      +   V +   KS+ F
Sbjct: 121 SVMSMLSEPNIESGANIDACI-------LWRDNRPEFERQVKLSILKSLGF 164

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 4e-22
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 58  IMQEWKILEKHLPESIFVRVY-ENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
           + ++   L K+  E     +  +N +     +I+G   T Y  G+F   L FP DYP  P
Sbjct: 4   LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 63

Query: 117 PMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKK------SEKWNPDESTVLQVLVSIQA 170
           P + + +     +PN+  NG VC+S+L+     K       E+W P   TV  +++S+ +
Sbjct: 64  PKMKFITE--IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIMISVIS 120

Query: 171 L 171
           +
Sbjct: 121 M 121

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 82.1 bits (202), Expect = 2e-19
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           S +++M+++K L++  P  +     E+ I    A+I G   TP+ DG F   L F  +YP
Sbjct: 4   SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 63

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           N PP V + S     +PN+YA+G +CL +L                 V  +L SIQ+L+ 
Sbjct: 64  NKPPTVKFISK--MFHPNVYADGSICLDILQNRWSPT--------YDVAAILTSIQSLLD 113

Query: 174 NEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV 204
              P  N P + +     ++++    Y + V
Sbjct: 114 E--PNPNSPANSL--AAQLYQENRREYEKRV 140

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           AG  ++I++E + L       I     E+       VI G   +P+  G F  +L  P +
Sbjct: 1   AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 60

Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V + +     +PN+   GR+CL +L                 +  VL+SIQAL
Sbjct: 61  YPMAAPKVRFMT--KIYHPNVDKLGRICLDILKDKWSPA--------LQIRTVLLSIQAL 110

Query: 172 VLN---EKPYFNEPGHGMWPGRSIWEKKSTAYNE 202
           +     + P  N+         +   + + A+  
Sbjct: 111 LSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR 144

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
            ++ +E  +L    P  I     ++++D LRA I+G A TPY  G+F  ++  P  YP  
Sbjct: 5   SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFE 64

Query: 116 PPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN- 174
           PP + + +     +PN+ + GR+CL +L        +        +  VL SIQ L+   
Sbjct: 65  PPQIRFLTP--IYHPNIDSAGRICLDVLKLP----PKGAWRPSLNIATVLTSIQLLMSEP 118

Query: 175 --EKPYFNEPGHGMWPGRSIWEKKSTAYNE 202
             + P   +        +  + K +  + E
Sbjct: 119 NPDDPLMADISSEFKYNKPAFLKNARQWTE 148

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 5e-19
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           S K+I +E   +    P +       + I   R+ I+G  G+ Y  G+FF D+ F  DYP
Sbjct: 3   SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 62

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
             PP V +R+     + N+ + G +CL +L                T+ +VL+SI +L+ 
Sbjct: 63  FKPPKVTFRTRI--YHCNINSQGVICLDILKDNWSPA--------LTISKVLLSICSLLT 112

Query: 174 N---EKPYFNEPGHGMWPGRSIWEKKSTAYNE 202
           +     P            R+  ++ +  + +
Sbjct: 113 DCNPADPLVGSIATQYMTNRAEHDRMARQWTK 144

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 5e-19
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 16/133 (12%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDL----LRAVIVGTAGTPYHDGLFFFDLAFPAD 111
            ++++E +  +K + +       E+  D+       +I+G   T Y + ++   +     
Sbjct: 8   FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 67

Query: 112 YPNHPPMVHYRS--FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
           YP  PP V + +      +N +        +S+L          W     ++  VL  ++
Sbjct: 68  YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK--------WQN-SYSIKVVLQELR 118

Query: 170 ALVLNEKPYFNEP 182
            L +  K     P
Sbjct: 119 RL-MMSKENMKLP 130

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 80.2 bits (197), Expect = 1e-18
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 12/133 (9%)

Query: 58  IMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
           + ++   + +   +      V +N I     +++G   T Y  G F   L FP DYP  P
Sbjct: 5   LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 64

Query: 117 PMVHYRSFGLRLNPNLYANGRVCLSLLNTW------TGKKSEKWNPDESTVLQVLVSIQA 170
           P + + S     +PN+   G VC+S+L+          +  E+W P   TV  +L+S+ +
Sbjct: 65  PKMKFISE--IWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPV-HTVETILLSVIS 121

Query: 171 LVLNEKPYFNEPG 183
           ++ +  P F  P 
Sbjct: 122 MLTD--PNFESPA 132

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 79.0 bits (194), Expect = 2e-18
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 13/154 (8%)

Query: 52  AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
           A   K+I++E + L       I    +++ +   +  I G   +PY DG+F  +L  P D
Sbjct: 2   ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61

Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP   P V + +     +PN+   GR+CL +L T               +  VL+SIQAL
Sbjct: 62  YPMEAPKVRFLTK--IYHPNIDRLGRICLDVLKTNWSPA--------LQIRTVLLSIQAL 111

Query: 172 VLN---EKPYFNEPGHGMWPGRSIWEKKSTAYNE 202
           + +     P  N+            + K+  + +
Sbjct: 112 LASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 145

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 10/125 (8%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           + +++M+++K +++  P  +      + + +  A+I+G A TPY DG F   L F  +YP
Sbjct: 4   ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 63

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           N PP V + S     +PN+YANG +CL +L                 V  +L SIQ+L  
Sbjct: 64  NKPPHVKFLSE--MFHPNVYANGEICLDILQNRWTPT--------YDVASILTSIQSLFN 113

Query: 174 NEKPY 178
           +  P 
Sbjct: 114 DPNPA 118

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.7 bits (191), Expect = 5e-18
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 21/123 (17%)

Query: 67  KHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGL---FFFDLAFPADYPNHPPMVHYRS 123
             L     V  + +    L   I GT  T             +  P+ YP  PP +    
Sbjct: 36  HSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINL 95

Query: 124 ---------FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
                      L +   + +NG + L +L+ W              ++ V+  + +L L+
Sbjct: 96  ENFDMNTISSSLPIQEYIDSNGWIALPILHCW-------DPAA-MNLIMVVQELMSL-LH 146

Query: 175 EKP 177
           E P
Sbjct: 147 EPP 149

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 11/129 (8%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           +  ++++E + L+K  P  +     ++   L+   ++     PYH   F   ++FP +YP
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYP 60

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
             PPM+ + +     +PN+  NG++CL ++++             +   QVL ++  LV 
Sbjct: 61  FKPPMIKFTTK--IYHPNVDENGQICLPIISSE-------NWKPCTKTCQVLEALNVLVN 111

Query: 174 NEKPYFNEP 182
              P   EP
Sbjct: 112 R--PNIREP 118

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 51  PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
           P    + + +E   L    P+ I V   E  +  L+  I G  GTPY  GLF   L    
Sbjct: 4   PPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGK 63

Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           D+P  PP  ++ +     +PN+ ANG +C+++L          W   E  +  VL++I+ 
Sbjct: 64  DFPASPPKGYFLTK--IFHPNVGANGEICVNVLK-------RDWTA-ELGIRHVLLTIKC 113

Query: 171 LVLN---EKPYFNEPGHGMWPGRSIWEKKSTAYNE 202
           L+++   E     E G  +      +  ++    E
Sbjct: 114 LLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 148

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 3e-16
 Identities = 27/151 (17%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           ++  + +++  L+++  + I  +     +      I G   + +   +F   + F ++Y 
Sbjct: 5   AYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYN 64

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
             PP+V + +     N +    G+ C+  L+       EKWN +  T+  +L+++Q ++ 
Sbjct: 65  YAPPVVKFITIPFHPNVD-PHTGQPCIDFLDNP-----EKWNTNY-TLSSILLALQVMLS 117

Query: 174 N---EKPYFNEPGHGMWPGRSIWEKKSTAYN 201
           N   E P   E    +    S++      +N
Sbjct: 118 NPVLENPVNLEAARILVKDESLYRTILRLFN 148

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 70.1 bits (171), Expect = 3e-15
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 15/129 (11%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDL----LRAVIVGTAGTPYHDGLFFFDLAFPAD 111
            ++++E +  EK            +  D+        I+G   + + + ++   +    +
Sbjct: 7   FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPN 66

Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
           YP+ PP V + S  + L       G V               W     T+  +L+ ++  
Sbjct: 67  YPDSPPKVTFIS-KINLPCVNPTTGEVQTDFH------TLRDWKRA-YTMETLLLDLRKE 118

Query: 172 VL---NEKP 177
           +    N+K 
Sbjct: 119 MATPANKKL 127

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 69.8 bits (170), Expect = 4e-15
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K++ QE + L       I      + +    A + G   T Y    +   L FP+DYP  
Sbjct: 12  KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71

Query: 116 PPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175
           PP+V + +     +PN+  +G +CL +L                 V  +L+S+Q+L+   
Sbjct: 72  PPVVKFTTP--CWHPNVDQSGNICLDILKENWT--------ASYDVRTILLSLQSLLGE- 120

Query: 176 KPYFNEP 182
            P    P
Sbjct: 121 -PNNASP 126

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 56  KKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
           K+IM+E + ++      I +  V E+ I  L+   +G  GTPY  G F  D+  P +YP 
Sbjct: 4   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63

Query: 115 HPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
            PP + + +     +PN+ +        +          W+P   T+   L+S+QAL+ +
Sbjct: 64  KPPKMQFDTK--VYHPNISSVTGAICLDILK------NAWSPVI-TLKSALISLQALLQS 114

Query: 175 EKPYFNEP 182
             P  N+P
Sbjct: 115 --PEPNDP 120

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 17/154 (11%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYEN---RIDLL--RAVIVGTAGTPYHDGLFFFDLAFPA 110
            ++ QE K   K  P        +N    ++L+     I G  GTP+  GLF   + F  
Sbjct: 5   SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 64

Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
           DYP+ PP   +       +PN+Y +G V LS+L          W P   T+ Q+L+ IQ 
Sbjct: 65  DYPSSPPKCKFEPP--LFHPNVYPSGTVSLSILEEDK-----DWRPAI-TIKQILLGIQE 116

Query: 171 LVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV 204
           L+    P   +P        +I+ +    Y + V
Sbjct: 117 LLNE--PNIQDPAQA--EAYTIYCQNRVEYEKRV 146

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 15/146 (10%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           +  +I ++   L  +LP++  +   +    L   +++      Y  G F F       YP
Sbjct: 4   AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 61

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
           + PP V   +     +PN+   G VCL++L        E W P   T+  ++  +Q L L
Sbjct: 62  HDPPKVKCETM--VYHPNIDLEGNVCLNILR-------EDWKPV-LTINSIIYGLQYLFL 111

Query: 174 N---EKPYFNEPGHGMWPGRSIWEKK 196
               E P   E    +   R ++E+ 
Sbjct: 112 EPNPEDPLNKEAAEVLQNNRRLFEQN 137

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 14/151 (9%)

Query: 56  KKIMQEWKILEKHLPESIF-VRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
           +++M+E + + K   ++   ++V E  +   + +I      PY  G F  ++ FPA+YP 
Sbjct: 2   RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 60

Query: 115 HPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
            PP + +++     +PN+   G+VCL +++              +   QV+ S+ ALV +
Sbjct: 61  KPPKITFKTK--IYHPNIDEKGQVCLPVISAE-------NWKPATKTDQVIQSLIALVND 111

Query: 175 ---EKPYFNEPGHGMWPGRSIWEKKSTAYNE 202
              E P   +        R  + K +  + +
Sbjct: 112 PQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 142

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 62.1 bits (150), Expect = 3e-12
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 24/140 (17%)

Query: 56  KKIMQEWKILEKHL-------------PESIFVRVYENRIDLLRAVIVGTAGTPYHDGLF 102
            ++++E   +++                  +  ++    I   R  I G  GTPY  G F
Sbjct: 4   ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 63

Query: 103 FFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVL 162
             D+  P DYP +PP + + +     N +    G +CL +L                T+ 
Sbjct: 64  TLDIVIPPDYPYNPPKMKFVTKIWHPNIS-SQTGAICLDILKHEWSPA--------LTIR 114

Query: 163 QVLVSIQALVLNEKPYFNEP 182
             L+SIQA++ +  P   +P
Sbjct: 115 TALLSIQAMLAD--PVPTDP 132

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 56  KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
           K+  +E    E+     I V + +     LR  I G   TPY  G +  ++  P  YP +
Sbjct: 10  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 69

Query: 116 PPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175
           PP V + +     N +    G +CL           ++W     T+  VL+S+QAL+   
Sbjct: 70  PPKVRFITKIWHPNISSV-TGAICLD-------ILKDQWAAA-MTLRTVLLSLQALLAAA 120

Query: 176 KPY 178
           +P 
Sbjct: 121 EPD 123

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 14/129 (10%)

Query: 54  SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
           S+++   ++  L       ++     + +        G  GTPY DG +   +  P+DYP
Sbjct: 1   SNRRREMDYMRLCNS-TRKVYP---SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 56

Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
              P + + +    L+PN+                  ++ W P         V +  L+ 
Sbjct: 57  FKSPSIGFCNR--ILHPNVDERSGSV------CLDVINQTWTPMYQLENIFDVFLPQLL- 107

Query: 174 NEKPYFNEP 182
              P  ++P
Sbjct: 108 -RYPNPSDP 115

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 5e-08
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 23/142 (16%)

Query: 56  KKIMQEWKILEKHLPES---IFVRVYENRIDLLRAVIVGT-AGTPYHDGL---------- 101
            ++M+E + + +          V +  + +      +      +P H  L          
Sbjct: 7   DRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 66

Query: 102 -FFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDEST 160
               + +F  ++P  PP V      L     +   G +C+ LL        + W+    +
Sbjct: 67  YILLNFSFKDNFPFDPPFVRVVLPVLS-GGYVLGGGALCMELLTK------QGWSSAY-S 118

Query: 161 VLQVLVSIQALVLNEKPYFNEP 182
           +  V++ I A ++  K      
Sbjct: 119 IESVIMQINATLVKGKARVQFG 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.97
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.78
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.67
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.62
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	94.21
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	87.36

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=4.6e-40  Score=289.79  Aligned_cols=155  Identities=29%  Similarity=0.554  Sum_probs=144.2

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      |..|+|||++|+++|++++++||++.+ +++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  |
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--H   78 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL--H   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCS--C
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCce--e
Confidence            357899999999999999999999998 5779999999999999999999999999999999999999999999976  9


Q ss_pred             CCcCCCCceeeccccccC------CCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWT------GKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNED  203 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~------G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~  203 (359)
                      |||+.+|+||+++|+++.      ..+.+.|+|++ +|.+||.+|++||.+|++  ++|.|.  +|+.+|.+++.+|+++
T Consensus        79 Pnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~-ti~~il~~i~~ll~~p~~--~~p~n~--eaa~l~~~~~~~f~~~  153 (164)
T d2ucza_          79 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQ-SVEKILLSVMSMLSEPNI--ESGANI--DACILWRDNRPEFERQ  153 (164)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTC-CHHHHHHHHHHHHHSCCG--GGCCCH--HHHHHHHTTHHHHHHH
T ss_pred             ceEcCCCCeeeccccCccccccccccccccCCccc-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHH
Confidence            999999999999998753      23568899998 999999999999999988  999988  7899999999999999


Q ss_pred             HHHHHHHHH
Q 018254          204 VFILSCKSM  212 (359)
Q Consensus       204 v~~~t~k~m  212 (359)
                      |+.+++++|
T Consensus       154 ~r~~~~k~~  162 (164)
T d2ucza_         154 VKLSILKSL  162 (164)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998875

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=6.8e-40  Score=284.73  Aligned_cols=147  Identities=31%  Similarity=0.630  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.+.|||++|+++|+++++.||++.+.++|+..|+++|.||+||||+||+|+|+|.||++||+.||+|+|.|+++  |||
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~--HPn   79 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMF--HPN   79 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--CTT
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCccc--cee
Confidence            347899999999999999999999999999999999999999999999999999999999999999999999976  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      ||.+|.|||++|.       +.|+|++ +|.+||++|++||.+|++  ++|+|.  +|+.++.++++.|+++|+.++.++
T Consensus        80 I~~~G~iCl~~l~-------~~w~p~~-~i~~il~~i~~ll~~p~~--~~p~n~--eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          80 VYADGSICLDILQ-------NRWSPTY-DVAAILTSIQSLLDEPNP--NSPANS--LAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             BCTTCBBCCGGGT-------TSCCTTC-CHHHHHHHHHHTTSSCCC--SSCSCH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EcCCCCEEecccc-------ccCCCCC-CHHHHHHHHHHHhCCCCC--CChhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997       6799998 999999999999999888  999987  789999999999999999999887


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      +
T Consensus       148 ~  148 (149)
T d1z3da1         148 W  148 (149)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=6.5e-40  Score=283.40  Aligned_cols=145  Identities=29%  Similarity=0.543  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      |+|||++|++.|++++|.||++.++++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  |||||
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPnV~   79 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY--HPNIN   79 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BTTBC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCc--eeeEC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999976  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      .+|+||+++|+       +.|+|++ ++.+||.+|+++|.+|++  ++|.+.  +++.++.++++.|+++|+.++.+++
T Consensus        80 ~~G~iCl~~l~-------~~w~p~~-~i~~Il~~i~~ll~~p~~--~~~~n~--ea~~~~~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1          80 SNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVP--EIARIYKTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             TTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEeeehhc-------ccCCCCC-CHHHHHHHHHHHhccCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99999999997       5699998 999999999999999999  999988  6799999999999999999988754

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=9.8e-40  Score=283.24  Aligned_cols=147  Identities=27%  Similarity=0.478  Sum_probs=140.5

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.+.|||++|++.|++++|.||++.+.++|+..|+++|.||++|||+||+|+|+|.||++||++||+|+|+|+++  |||
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~--HPn   78 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIY--HCN   78 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BTT
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCc--Cce
Confidence            357899999999999999999999999999999999999999999999999999999999999999999999987  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      ||.+|+|||++|.       +.|+|++ +|.+||++|+.||.+|++  ++|++.  +|+.+|.+|+++|.++|+.++.++
T Consensus        79 v~~~G~iCl~~l~-------~~W~p~~-~l~~il~~i~~ll~~p~~--~~p~n~--~aa~~~~~d~~~f~~~ar~~~~k~  146 (148)
T d1y6la_          79 INSQGVICLDILK-------DNWSPAL-TISKVLLSICSLLTDCNP--ADPLVG--SIATQYMTNRAEHDRMARQWTKRY  146 (148)
T ss_dssp             BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ECCCCeEEEEecC-------CcCCCcE-eHHHHHHHHHHHHhCCCC--cccccH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            9999999999997       7899998 999999999999999998  999988  789999999999999999999876


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      +
T Consensus       147 A  147 (148)
T d1y6la_         147 A  147 (148)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=2.4e-39  Score=281.55  Aligned_cols=150  Identities=30%  Similarity=0.586  Sum_probs=142.7

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.|.|||++|+++|+++++.||+|.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  |||
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~--HPn   79 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF--HPN   79 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--CTT
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCC--ccC
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999976  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      |+.+|.||+++|.       +.|+|.+ +|.+||.+|++||.+|++  ++|.+.  +++.++.+++++|+++|+.++.++
T Consensus        80 I~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~~p~~--~~~~n~--eaa~l~~~~~~~f~~~~~~~~~ks  147 (153)
T d1ayza_          80 VYANGEICLDILQ-------NRWTPTY-DVASILTSIQSLFNDPNP--ASPANV--EAATLFKDHKSQYVKRVKETVEKS  147 (153)
T ss_dssp             BCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHTCCCC--SSCSSH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccccccc-------ccCCCcC-cHHHHHHHHHHHHcCCCC--CCcHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997       7899998 999999999999999998  889887  789999999999999999999988


Q ss_pred             HHHH
Q 018254          212 MTFL  215 (359)
Q Consensus       212 m~~~  215 (359)
                      +.+.
T Consensus       148 ~~~~  151 (153)
T d1ayza_         148 WEDD  151 (153)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            7654

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=3e-39  Score=281.45  Aligned_cols=149  Identities=28%  Similarity=0.494  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      +.+||++|++.|++++|.||+|.++++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  ||||+
T Consensus         3 ~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~--HPnV~   80 (154)
T d1yh2a1           3 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIY--HPNID   80 (154)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BTTBC
T ss_pred             HHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCC--cCCcC
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999976  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      .+|+||+++|+++.   .+.|+|++ +|.+||++|++||.+|++  ++|+|.  +|+.++.+++..|.++|+.++.+++
T Consensus        81 ~~g~icl~~l~~~~---~~~w~p~~-~i~~il~~i~~ll~~p~~--~~p~n~--eaa~~~~~~~~~f~~~~r~~~~k~a  151 (154)
T d1yh2a1          81 SAGRICLDVLKLPP---KGAWRPSL-NIATVLTSIQLLMSEPNP--DDPLMA--DISSEFKYNKPAFLKNARQWTEKHA  151 (154)
T ss_dssp             TTCBBCCGGGSCTT---TSCCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCcccccccCCc---cccCCccc-cHHHHHHHHHHHhccCCC--CCchhH--HHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            99999999998532   36899998 999999999999999998  999988  7899999999999999999998865

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=4e-39  Score=280.07  Aligned_cols=146  Identities=26%  Similarity=0.450  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      ..|||++|+++|+++++.||+|.++++|+.+|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  |||||
T Consensus         3 ~~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPni~   80 (149)
T d1j7db_           3 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY--HPNVD   80 (149)
T ss_dssp             SCHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCC--BTTBC
T ss_pred             ccHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCC--CceEC
Confidence            4589999999999999999999999999999999999999999999999999999999999999999999976  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT  213 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~  213 (359)
                      .+|+||+++|.       +.|+|+. ++.+||.+|++||.+|++  ++|+|.  +|+.++.++.+.|+++|+.++.++++
T Consensus        81 ~~G~icl~~l~-------~~w~p~~-~i~~il~~i~~ll~~p~~--~~p~n~--eaa~l~~~~~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_          81 KLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPNP--DDPLAN--DVAEQWKTNEAQAIETARAWTRLYAM  148 (149)
T ss_dssp             TTCBBCCGGGT-------TSCCTTS-CHHHHHHHHHHHHHSCCT--TCTTCC--SHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCcEehHHhc-------CCCCCCc-cHHHHHHHHHHHHhCCCC--CChhhH--HHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            99999999997       7899998 999999999999999988  999988  67999999999999999999988754

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=4.2e-39  Score=281.07  Aligned_cols=148  Identities=28%  Similarity=0.472  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +++.|||++|+++|+++++.||+|.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  |||
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~--HPn   79 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY--HPN   79 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCC--BTT
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCC--CCc
Confidence            346799999999999999999999999999999999999999999999999999999999999999999999986  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      ||.+|.||++++.       +.|+|++ +|.+||.+|++||.+|++  ++|+|.  +|+.+|.++.++|+++|+.++.++
T Consensus        80 I~~~G~icl~~~~-------~~W~p~~-~i~~il~~i~~ll~~P~~--~~p~n~--eaa~l~~~d~~~f~~~~r~~~~~~  147 (152)
T d1jata_          80 IDRLGRICLDVLK-------TNWSPAL-QIRTVLLSIQALLASPNP--NDPLAN--DVAEDWIKNEQGAKAKAREWTKLY  147 (152)
T ss_dssp             BCTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSTTCC--TTHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCeeecccc-------ccCCchh-HHHHHHHHHHHHHcCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHHH
Confidence            9999999999997       6899998 999999999999999988  999998  679999999999999999999876


Q ss_pred             HH
Q 018254          212 MT  213 (359)
Q Consensus       212 m~  213 (359)
                      +.
T Consensus       148 a~  149 (152)
T d1jata_         148 AK  149 (152)
T ss_dssp             SE
T ss_pred             hc
Confidence            43

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=278.24  Aligned_cols=149  Identities=25%  Similarity=0.464  Sum_probs=141.9

Q ss_pred             CCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccccc
Q 018254           49 HFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL  128 (359)
Q Consensus        49 ~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rf  128 (359)
                      +++..++|||++|+++|++++|+||+|.++++|+..|+++|.||+||||+||.|+|.|.||++||++||+|+|.|+++  
T Consensus         2 ~~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--   79 (151)
T d1zdna1           2 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF--   79 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCC--
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999999977  


Q ss_pred             CCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHH
Q 018254          129 NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILS  208 (359)
Q Consensus       129 HPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t  208 (359)
                      ||||+.+|.||+++|.       +.|+|++ +|.+||.+|+++|.+|++  ++|.|.  +++.++.++++.|+++|+.++
T Consensus        80 HPnI~~~G~ic~~~l~-------~~W~p~~-~l~~il~~i~~~l~~p~~--~~p~n~--eaa~~~~~~~~~f~~~ar~~~  147 (151)
T d1zdna1          80 HPNVGANGEICVNVLK-------RDWTAEL-GIRHVLLTIKCLLIHPNP--ESALNE--EAGRLLLENYEEYAARARLLT  147 (151)
T ss_dssp             CTTBCTTSBBCHHHHT-------TTCCTTC-CHHHHHHHHHHHHHSCCG--GGCSSH--HHHHHHHHCHHHHHHHHHHHH
T ss_pred             CceecCCCCccccccc-------ccCCccc-cHHHHHHHHHHHHhCCCC--CchhhH--HHHHHHHHCHHHHHHHHHHHH
Confidence            9999999999999997       7999998 999999999999999998  999988  789999999999999999998


Q ss_pred             HHH
Q 018254          209 CKS  211 (359)
Q Consensus       209 ~k~  211 (359)
                      .++
T Consensus       148 ~~~  150 (151)
T d1zdna1         148 EIH  150 (151)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            763

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=276.96  Aligned_cols=147  Identities=28%  Similarity=0.501  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecC-----CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccccc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYEN-----RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL  128 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~-----~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rf  128 (359)
                      |++||++|+++|++++|.|+++.|.++     |+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  
T Consensus         3 a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--   80 (156)
T d2uyza1           3 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--   80 (156)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--
T ss_pred             HHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccc--
Confidence            789999999999999999999999876     8999999999999999999999999999999999999999999976  


Q ss_pred             CCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHH
Q 018254          129 NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILS  208 (359)
Q Consensus       129 HPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t  208 (359)
                      ||||+.+|.||+++|.+     .++|+|++ ||.+||.+|++||.+|++  ++|+|.  +++.+|.+++++|.++|+.++
T Consensus        81 HPnV~~~G~icl~~l~~-----~~~W~p~~-ti~~il~~i~~ll~~p~~--~~p~n~--eaa~~~~~~~~~f~~~vr~~~  150 (156)
T d2uyza1          81 HPNVYPSGTVSLSILEE-----DKDWRPAI-TIKQILLGIQELLNEPNI--QDPAQA--EAYTIYCQNRVEYEKRVRAQA  150 (156)
T ss_dssp             STTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHHHHH
T ss_pred             cccccccceeeecccCc-----ccccCCcc-cHHHHHHHHHHHhcCCCC--CCccCH--HHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999999964     36899997 999999999999999988  999988  789999999999999999999


Q ss_pred             HHHH
Q 018254          209 CKSM  212 (359)
Q Consensus       209 ~k~m  212 (359)
                      .+++
T Consensus       151 ~k~A  154 (156)
T d2uyza1         151 KKFA  154 (156)
T ss_dssp             HHTC
T ss_pred             HHHC
Confidence            8754

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=4.5e-38  Score=272.98  Aligned_cols=143  Identities=27%  Similarity=0.405  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      +.|||++|++.|+++++.||++.+.++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  ||||+
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPnV~   79 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCY--HPNVD   79 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCC--STTBC
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCC--cccCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999987  99999


Q ss_pred             CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      .+|.||+++|.       +.|+|++ +|.+||++|++||.+|++  ++|.|.  +|+.++ +|.++|+++|+..+.|+
T Consensus        80 ~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~~p~~--~~p~n~--~aa~l~-~n~~~f~k~~~~~~~K~  144 (146)
T d1i7ka_          80 TQGNISLDILK-------EKWSALY-DVRTILLSIQSLLGEPNI--DSPLNT--HAAELW-KNPTAFKKYLQETYSKQ  144 (146)
T ss_dssp             TTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHT-TSHHHHHHHHHHHHHTT
T ss_pred             CCCcccccccc-------ccCCCCc-CHHHHHHHHHHHHhCCCC--CCchhH--HHHHHh-hCHHHHHHHHHHHHHcc
Confidence            99999999997       7899998 899999999999999988  999988  678888 59999999999887664

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-37  Score=272.02  Aligned_cols=149  Identities=24%  Similarity=0.491  Sum_probs=139.8

Q ss_pred             CChhHHHHHHHHHHHHHhc---CCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccc
Q 018254           50 FPAGSHKKIMQEWKILEKH---LPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGL  126 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~---~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~  126 (359)
                      |++.+.+||++|+++|+++   .+.+|++.+.++|+..|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+++
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            5678999999999999875   4579999999999999999999999999999999999999999999999999999986


Q ss_pred             ccCCCcCC-CCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHH
Q 018254          127 RLNPNLYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVF  205 (359)
Q Consensus       127 rfHPNVy~-~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~  205 (359)
                        ||||+. +|.||++++.       +.|+|+. ||.+||.+|++||.+|++  ++|.|.  +|+.+|+++++.|+++|+
T Consensus        81 --Hpni~~~~g~ic~~~~~-------~~W~p~~-~i~~il~~i~~ll~~p~~--~~p~n~--eaa~l~~~~~~~f~~~a~  146 (154)
T d2bepa1          81 --HPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA--VVANQYKQNPEMFKQTAR  146 (154)
T ss_dssp             --BTTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHHHHHHHH
T ss_pred             --CCCeeCCCCcccccccc-------ccCCCcC-CHHHHHHHHHHHHcCCCC--CCchHH--HHHHHHHHCHHHHHHHHH
Confidence              999995 8999999997       8999998 999999999999999998  999887  789999999999999999


Q ss_pred             HHHHHHH
Q 018254          206 ILSCKSM  212 (359)
Q Consensus       206 ~~t~k~m  212 (359)
                      .+|++++
T Consensus       147 ~~t~k~A  153 (154)
T d2bepa1         147 LWAHVYA  153 (154)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhc
Confidence            9998864

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.4e-37  Score=272.72  Aligned_cols=146  Identities=24%  Similarity=0.414  Sum_probs=136.4

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      .++.|||++|+++|+++++.||++.++++|+.+|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++  |||
T Consensus         8 ~~~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~--Hpn   85 (156)
T d2e2ca_           8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW--HPN   85 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BTT
T ss_pred             chHHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCc--CCC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999976  999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      |+.+|.||+++|.       +.|+|.+ +|.+||++|++||.+|++  ++|+|.  +++.+|+ +..+|.+.|+..++.+
T Consensus        86 v~~~G~icl~~l~-------~~Wsp~~-~i~~vl~~i~~ll~~P~~--~~p~n~--~aa~l~~-n~~~y~k~~~e~~~~~  152 (156)
T d2e2ca_          86 VDQSGNICLDILK-------ENWTASY-DVRTILLSLQSLLGEPNN--ASPLNA--QAADMWS-NQTEYKKVLHEKYKTA  152 (156)
T ss_dssp             BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHTTSCCC--SSCSCH--HHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccccccC-------CCCCCcc-cHHHHHHHHHHHHhCCCC--CChhhH--HHHHHHH-CHHHHHHHHHHHHHHH
Confidence            9999999999997       7899998 899999999999999998  999887  6788885 6678999998877765


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      .
T Consensus       153 ~  153 (156)
T d2e2ca_         153 Q  153 (156)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=1.3e-37  Score=273.56  Aligned_cols=151  Identities=22%  Similarity=0.395  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEee-cCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254           55 HKKIMQEWKILEKHLPESIFVRVY-ENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY  133 (359)
Q Consensus        55 ~kRL~kEl~~L~k~~p~gI~v~~~-e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy  133 (359)
                      ..||++|+++|++++++||+|.+. ++|+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++  ||||+
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPnI~   79 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIW--HPNID   79 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCC--CTTBC
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCC--CcccC
Confidence            469999999999999999999985 457999999999999999999999999999999999999999999986  99999


Q ss_pred             CCCceeeccccccCCC------CCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          134 ANGRVCLSLLNTWTGK------KSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       134 ~~GkVCLslL~tw~G~------~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                      .+|.|||++|++|.+.      ..+.|+|++ +|.+||++|++||.+|++  ++|+|.  +|+.++.++++.|+++|+.+
T Consensus        80 ~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~-~i~~iL~~i~~ll~~p~~--~~p~n~--eaa~l~~~~~~~f~~~a~~~  154 (161)
T d1pzva_          80 KEGNVCISILHDPGDDKWGYERPEERWLPVH-TVETILLSVISMLTDPNF--ESPANV--DAAKMQRENYAEFKKKVAQC  154 (161)
T ss_dssp             TTSBBCCGGGCCC---------CCSSCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCH--HHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCccchhhcCCcccccccccccccccCccc-cHHHHHHHHHHHHhCCCC--CCccCH--HHHHHHHHCHHHHHHHHHHH
Confidence            9999999999875422      256799998 999999999999999888  999887  78999999999999999999


Q ss_pred             HHHHH
Q 018254          208 SCKSM  212 (359)
Q Consensus       208 t~k~m  212 (359)
                      +.++.
T Consensus       155 v~k~~  159 (161)
T d1pzva_         155 VRRSQ  159 (161)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98764

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=8.8e-38  Score=271.92  Aligned_cols=146  Identities=18%  Similarity=0.365  Sum_probs=137.1

Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      |+..|.+||++|+++|+++++.||+|.+.++|+..|+++|.||+||||+||.|+|+|.||++||..||+|+|.|+++  |
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~--H   78 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF--H   78 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCC--C
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccc--c
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999977  9


Q ss_pred             CCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254          130 PNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL  207 (359)
Q Consensus       130 PNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~  207 (359)
                      |||| .+|+||+++|.+     .+.|+|++ ||.+||.+|++||.+|++  ++|.|.  +|+.+|.++++.|+++||..
T Consensus        79 pnV~~~~G~iC~~~l~~-----~~~W~p~~-tl~~vL~~I~~ll~~p~~--~~p~n~--eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          79 PNVDPHTGQPCIDFLDN-----PEKWNTNY-TLSSILLALQVMLSNPVL--ENPVNL--EAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             TTBCTTTCCBCCHHHHC-----GGGCCTTC-CHHHHHHHHHHHHTSCCT--TSCSCH--HHHHHHHSCHHHHHHHHHHH
T ss_pred             CceecCcccccccccCc-----hhhcCccc-cHHHHHHHHHHHHhCCCC--CCchhH--HHHHHHHHCHHHHHHHHHhh
Confidence            9999 689999999974     37899998 899999999999998887  999988  78999999999999999854

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=269.82  Aligned_cols=146  Identities=23%  Similarity=0.428  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEee-cCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRVY-ENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~~-e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      |.+||++|+++|++++|.||++.+. ++++..|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+++  ||||
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HpnI   77 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIY--HPNV   77 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCC--BTTB
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCC--cceE
Confidence            4689999999999999999998887 45889999865 999999999999999999999999999999999976  9999


Q ss_pred             CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                      |.+|.||+++|.      .+.|+|++ +|.+||.+|++||.+|++  ++|+|.  +|+.++.++++.|+++|+.++.+++
T Consensus        78 ~~~G~icl~~l~------~~~W~p~~-~i~~il~~i~~ll~~p~~--~~p~n~--eaa~~~~~d~~~f~~~a~~~~~kya  146 (150)
T d1wzva1          78 DENGQICLPIIS------SENWKPCT-KTCQVLEALNVLVNRPNI--REPLRM--DLADLLTQNPELFRKNAEEFTLRFG  146 (150)
T ss_dssp             CTTCBCCCGGGC------TTTCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSH--HHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCccccccc------ccCCCchh-HHHHHHHHHHHHHhCCCC--CCchHH--HHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999999999997      37899998 999999999999999888  999887  7899999999999999999998865


Q ss_pred             H
Q 018254          213 T  213 (359)
Q Consensus       213 ~  213 (359)
                      +
T Consensus       147 ~  147 (150)
T d1wzva1         147 V  147 (150)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=2.4e-37  Score=268.44  Aligned_cols=145  Identities=27%  Similarity=0.561  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      +.|||++|+++|++++|+||++.+ +++|++.|+++|.||+||||+||.|+|.|.||++||++||+|+|.|+++  ||||
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HpnI   79 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY--HPNI   79 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC--BTTB
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCc--CCcc
Confidence            689999999999999999999975 6789999999999999999999999999999999999999999999987  9999


Q ss_pred             CC-CCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254          133 YA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS  211 (359)
Q Consensus       133 y~-~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~  211 (359)
                      +. +|.+|++++.       +.|+|++ ||.+||++|++||.+|++  ++|+|.  +|+.+|.+|+++|+++|+.++.++
T Consensus        80 ~~~~~~~~~~~~~-------~~W~p~~-ti~~il~~i~~ll~~p~~--~~p~n~--eaa~~~~~~~~~f~~~~~~~~~k~  147 (149)
T d1fzya_          80 SSVTGAICLDILK-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDA--EVAQHYLRDRESFNKTAALWTRLY  147 (149)
T ss_dssp             CTTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCCcceeechhhc-------ccCCCcC-CHHHHHHHHHHHHhCCCC--CChhHH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence            95 7889999886       7899998 999999999999999998  999988  789999999999999999999875


Q ss_pred             H
Q 018254          212 M  212 (359)
Q Consensus       212 m  212 (359)
                      +
T Consensus       148 A  148 (149)
T d1fzya_         148 A  148 (149)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=2.5e-36  Score=266.06  Aligned_cols=145  Identities=23%  Similarity=0.515  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHh-------------cCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeee
Q 018254           54 SHKKIMQEWKILEK-------------HLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVH  120 (359)
Q Consensus        54 a~kRL~kEl~~L~k-------------~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~  120 (359)
                      ..+||++|+++|++             +.+.|+.+.+.++|+..|+++|.||+||||+||.|.|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            46899999999976             34579999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccCCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHH
Q 018254          121 YRSFGLRLNPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTA  199 (359)
Q Consensus       121 f~T~i~rfHPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~  199 (359)
                      |.|+++  ||||+ .+|.||++++.       +.|+|++ +|.+||.+|++||.+|++  ++|.|.  +|+.++.+++++
T Consensus        82 F~t~i~--HPni~~~~G~icl~~l~-------~~W~p~~-si~~iL~~I~~ll~~P~~--~dp~n~--eaa~l~~~d~~~  147 (161)
T d2f4za1          82 FVTKIW--HPNISSQTGAICLDILK-------HEWSPAL-TIRTALLSIQAMLADPVP--TDPQDA--EVAKMMIENHPL  147 (161)
T ss_dssp             ESSCCC--BTTBCTTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCH--HHHHHHHHCHHH
T ss_pred             ecCCCC--CCceECCCCCeecCccc-------ccCCCcc-cHHHHHHHHHHHHhCCCC--CCchhH--HHHHHHHHCHHH
Confidence            999987  99985 78999999997       6799998 899999999999999998  999887  789999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018254          200 YNEDVFILSCKSM  212 (359)
Q Consensus       200 Yne~v~~~t~k~m  212 (359)
                      |+++|+.++++++
T Consensus       148 y~~~v~~~t~~~a  160 (161)
T d2f4za1         148 FVQTAKLWTETFA  160 (161)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998753

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=267.41  Aligned_cols=141  Identities=25%  Similarity=0.471  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCC
Q 018254           56 KKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYA  134 (359)
Q Consensus        56 kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~  134 (359)
                      |||++|+++|+++++.|+.+.+ +++|+..|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+++  ||||+.
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPnV~~   78 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIY--HPNIDE   78 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCC--CTTBCT
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCC--CcCCcc
Confidence            7999999999999999998666 677999999998 999999999999999999999999999999999976  999999


Q ss_pred             CCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254          135 NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK  210 (359)
Q Consensus       135 ~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k  210 (359)
                      +|.||+++|++      +.|+|++ +|.+||.+|++||.+|++  ++|++.  +|+.+|.++++.|+++|+.++++
T Consensus        79 ~G~icl~~l~~------~~w~p~~-~i~~il~~i~~ll~~p~~--~~p~n~--~aa~~~~~d~~~f~~~a~~~~~k  143 (144)
T d1c4zd_          79 KGQVCLPVISA------ENWKPAT-KTDQVIQSLIALVNDPQP--EHPLRA--DLAEEYSKDRKKFCKNAEEFTKK  143 (144)
T ss_dssp             TCBBCCTTTSS------SSCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCH--HHHHHHHTCSSTTHHHHHHHHTT
T ss_pred             CCccccccccC------CCCCCcc-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999984      6899998 999999999999999988  899988  78999999999999999998765

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=247.32  Aligned_cols=112  Identities=28%  Similarity=0.538  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEe--ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254           54 SHKKIMQEWKILEKHLPESIFVRV--YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN  131 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p~gI~v~~--~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN  131 (359)
                      +.|||++|+++|++++++|+++.+  .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++.+||||
T Consensus         4 ~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpn   83 (117)
T d2a7la1           4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH   83 (117)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCcccccc
Confidence            469999999999999999998874  567999999999999999999999999999999999999999999998678999


Q ss_pred             cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhc
Q 018254          132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL  173 (359)
Q Consensus       132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~  173 (359)
                      ||.+|+||+++|+       ++|+|++ ||.+||++|++||.
T Consensus        84 v~~~G~iCl~~l~-------~~Wsp~~-ti~~vl~~i~~lLs  117 (117)
T d2a7la1          84 VYSNGHICLSILT-------EDWSPAL-SVQSVCLSIISMLS  117 (117)
T ss_dssp             BCTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHTC
T ss_pred             CcCCCeEEeecCc-------CCCCCcC-cHHHHHHHHHHHhC
Confidence            9999999999997       7899998 99999999999873

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=250.19  Aligned_cols=146  Identities=21%  Similarity=0.386  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL  132 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV  132 (359)
                      +|.|||++|++.|++++++||++.++++|+.+|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+    |+|+
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~----~~~~   76 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP----NGRF   76 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC----CSSB
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCC----Cccc
Confidence            378999999999999999999999999999999999999999999999999999999999999999999998    5555


Q ss_pred             CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHH
Q 018254          133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILS  208 (359)
Q Consensus       133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t  208 (359)
                      +.+|++|+++|..+    .++|+|++ ||.+||++|++||.+|+|..+.+.+... +..++..++.+|+.+++.+.
T Consensus        77 ~~~g~~~~~~l~~~----~~~Wsp~~-ti~~il~~i~~ll~~p~p~~~~~~~~~~-~~~~~~~~~~~f~~k~~~~~  146 (157)
T d2f4wa1          77 KCNTRLCLSITDFH----PDTWNPAW-SVSTILTGLLSFMVEKGPTLGSIETSDF-TKRQLAVQSLAFNLKDKVFC  146 (157)
T ss_dssp             CTTSCBC--------------CCTTC-CHHHHHHHHHHHHHSCCCCTTBCCCCHH-HHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCCCeeeeecccc----CCCCCccC-cHHHHHHHHHHHccCCCCCCCCccccHH-HHHHHHHHHHHHHHHHHHHH
Confidence            56788888877532    47899998 9999999999999999996665555432 34456677777776665544

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=252.86  Aligned_cols=142  Identities=22%  Similarity=0.440  Sum_probs=128.9

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           51 PAGSHKKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      ++.|.+||++|+++|+.  +.++.+.. +++|+..|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+++  |
T Consensus         1 ~~~a~~Rl~kEl~~l~~--~~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~--H   75 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY--H   75 (157)
T ss_dssp             CCHHHHHHHHHHHTCCC--CTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCC--B
T ss_pred             CCHHHHHHHHHHHHhCC--CCCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCC--C
Confidence            35789999999999964  45666554 668999999988 899999999999999999999999999999999987  9


Q ss_pred             CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254          130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC  209 (359)
Q Consensus       130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~  209 (359)
                      ||||.+|+||++++.       +.|+|++ +|.+||.+|++||.+|++  ++|+|.  +|+.++.++..+|+++|+.+++
T Consensus        76 Pnv~~~G~ic~~~~~-------~~W~p~~-~i~~il~~I~~ll~~Pn~--~~p~n~--eaa~l~~~~~~~f~~~v~~~~~  143 (157)
T d1y8xa1          76 PNIDLEGNVCLNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLNK--EAAEVLQNNRRLFEQNVQRSMR  143 (157)
T ss_dssp             TTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCH--HHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecc-------cCCCCCC-cHHHHHHHHHHHHcCCCC--cChHHH--HHHHHHHHCHHHHHHHHHHHHc
Confidence            999999999999996       7899998 999999999999999998  999988  7899999999999999987754

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=5.6e-34  Score=240.79  Aligned_cols=117  Identities=28%  Similarity=0.503  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCC
Q 018254           56 KKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYA  134 (359)
Q Consensus        56 kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~  134 (359)
                      -||+||+++|++++++||.|.+ +++|+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++  ||||+.
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~--Hpni~~   79 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW--HPNVDK   79 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC--CTTBCT
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCC--ccccCC
Confidence            4899999999999999999987 5678999999999999999999999999999999999999999999987  999999


Q ss_pred             CCceeeccccccC------CCCCCCcccCcccHHHHHHHHHHHhccC
Q 018254          135 NGRVCLSLLNTWT------GKKSEKWNPDESTVLQVLVSIQALVLNE  175 (359)
Q Consensus       135 ~GkVCLslL~tw~------G~~~e~WsP~~stI~qVL~sIq~Ll~~p  175 (359)
                      +|+|||++|+++.      +...++|+|++ ||.+||++||+||.+|
T Consensus        80 ~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~-ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          80 NGDVCISILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISMLADP  125 (125)
T ss_dssp             TCBBCCGGGSCC---------CTTSCCTTC-CHHHHHHHHHHHHSCC
T ss_pred             CCEEEeccccCccccccccccccCCcCccC-cHHHHHHHHHHHhhCc
Confidence            9999999998653      33578999998 9999999999999765

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=6.2e-34  Score=235.62  Aligned_cols=108  Identities=28%  Similarity=0.531  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCCC
Q 018254           57 KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANG  136 (359)
Q Consensus        57 RL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~G  136 (359)
                      ||++|+++|++++|.||++.++++|+..|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ .+||||+.+|
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~-~~hpni~~~G   80 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKP-PKHTHVYSNG   80 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSC-CCBTTBCTTS
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEecc-ccCceECCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999986 2599999999


Q ss_pred             ceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhc
Q 018254          137 RVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL  173 (359)
Q Consensus       137 kVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~  173 (359)
                      +||+++|+       ++|+|++ ||.+||++|++||.
T Consensus        81 ~iCl~il~-------~~Wsp~~-ti~~vl~~i~~lls  109 (109)
T d2fo3a1          81 DICLSLLG-------DDYNPSL-SISGLVLSIISMLS  109 (109)
T ss_dssp             BBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHC
T ss_pred             eEEeeccc-------CCCCccC-CHHHHHHHHHHHhC
Confidence            99999997       7899998 99999999999983

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=7.8e-34  Score=249.38  Aligned_cols=152  Identities=19%  Similarity=0.408  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCC
Q 018254           55 HKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYA  134 (359)
Q Consensus        55 ~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~  134 (359)
                      .|||++|+.+|.+++..   +.+ .+|+..|.++|.||+||||+||+|+|+|.||++||++||+|+|.|+++  ||||+.
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~-~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~--HPnI~~   75 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRIL--HPNVDE   75 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC--BTTBCT
T ss_pred             chHHHHHHHHHhcCCCc---CCC-CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCC--CCCCcc
Confidence            48999999999877643   455 479999999999999999999999999999999999999999999986  999985


Q ss_pred             -CCceeeccccccCCCCCCCcccCcccHHHHHHH-HHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254          135 -NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS-IQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM  212 (359)
Q Consensus       135 -~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~s-Iq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m  212 (359)
                       +|.||+++|.       +.|+|.+ ++.++|.. |+.|+..|++  ++|.|.  +|+.+|.+|+..|+++|+.++.+++
T Consensus        76 ~~G~vcl~il~-------~~W~p~~-~i~~il~~~i~~ll~~P~~--~~p~N~--eaa~l~~~n~~~f~~~~k~~~~k~a  143 (158)
T d1yf9a1          76 RSGSVCLDVIN-------QTWTPMY-QLENIFDVFLPQLLRYPNP--SDPLNV--QAAHLLHADRVGFDALLREHVSTHA  143 (158)
T ss_dssp             TTCBBCHHHHH-------HHCCTTC-CTHHHHHTHHHHHHHSCCS--SCCSCH--HHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             Ccccccccccc-------cccCchH-hhhhHHHHHHHHHhcCCCC--CcchhH--HHHHHHHHCHHHHHHHHHHHHHHHC
Confidence             8999999997       7899998 89999865 6788888887  999887  7899999999999999999998765


Q ss_pred             --HHHHhCCCCCcH
Q 018254          213 --TFLLRNPPKNFE  224 (359)
Q Consensus       213 --~~~l~~pp~~Fe  224 (359)
                        ...+..+|..|+
T Consensus       144 ~~~~~~~~~~~~~~  157 (158)
T d1yf9a1         144 TPQKALESIPEAYR  157 (158)
T ss_dssp             CHHHHHHTSCGGGC
T ss_pred             ChhhhcccCCcccC
Confidence              556788888764

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=236.01  Aligned_cols=144  Identities=18%  Similarity=0.372  Sum_probs=122.6

Q ss_pred             ChhHHHHHHHHHHHHHhcCC--CCe-EEEeecCCcceEEEEEec-CCCCCcCCCe-----------EEEEEeCCCCCCCC
Q 018254           51 PAGSHKKIMQEWKILEKHLP--ESI-FVRVYENRIDLLRAVIVG-TAGTPYHDGL-----------FFFDLAFPADYPNH  115 (359)
Q Consensus        51 ss~a~kRL~kEl~~L~k~~p--~gI-~v~~~e~~l~~w~~~I~G-P~gTPYegG~-----------F~f~I~fP~dYP~~  115 (359)
                      |..|.+||++|+++|+++.+  .|+ .+.+.++|+..|++.|.| |++|||++|+           |+|.|.||++||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~   81 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD   81 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhh
Confidence            46789999999999988765  354 477889999999999999 8999999987           99999999999999


Q ss_pred             CCeeeecccccccCCC-cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHH
Q 018254          116 PPMVHYRSFGLRLNPN-LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWE  194 (359)
Q Consensus       116 PP~V~f~T~i~rfHPN-Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~  194 (359)
                      ||+|+|.|+++  ||| ++.+|.||+++|.      .++|+|++ ||.+||++|+++|.+++|-.+.|.+.  .+..+ .
T Consensus        82 PP~v~f~t~i~--hpn~~~~~G~iCl~iL~------~~~WsP~~-ti~~IL~~i~~ll~~~~p~~~~~~~~--~~y~~-~  149 (162)
T d1zuoa1          82 PPFVRVVLPVL--SGGYVLGGGALCMELLT------KQGWSSAY-SIESVIMQINATLVKGKARVQFGANK--NQYNL-A  149 (162)
T ss_dssp             CCEEEEEESCE--ESTTBCGGGBBCCGGGS------TTTCCTTS-CHHHHHHHHHHHHHHTTCEECTTCCT--TCCCH-H
T ss_pred             cceEEEEEEee--ccccccCCceeeccccc------CCCCCCcc-cHHHHHHHHHHHHcCCCCCCCCCcCH--HHHHH-H
Confidence            99999999976  998 6899999999996      47899998 99999999999999998855555554  23333 4


Q ss_pred             HcHHHHHHHHHH
Q 018254          195 KKSTAYNEDVFI  206 (359)
Q Consensus       195 ~~~~~Yne~v~~  206 (359)
                      ++.++|++.|+.
T Consensus       150 ~~~~~y~~~~~~  161 (162)
T d1zuoa1         150 RAQQSYNSIVQI  161 (162)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhHHHHHHHHhh
Confidence            567789888763

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.97  E-value=3.3e-30  Score=221.83  Aligned_cols=123  Identities=17%  Similarity=0.314  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecC----CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccccccc
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYEN----RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRL  128 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~----~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rf  128 (359)
                      .+.+||++|+++|++++++++.+.+.++    |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++  
T Consensus         5 ~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~--   82 (139)
T d2a4da1           5 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN--   82 (139)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC--
T ss_pred             chhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcc--
Confidence            4679999999999999999877776543    6999999999999999999999999999999999999999999987  


Q ss_pred             CCCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccC-CCCCCCCCCC
Q 018254          129 NPNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE-KPYFNEPGHG  185 (359)
Q Consensus       129 HPNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p-~Py~neP~~~  185 (359)
                      ||||+ .+|.+|++.|...     ++|+|++ ||.+||++||+||.+| |+  +.|.+.
T Consensus        83 HpnV~~~~g~~~~~~l~~l-----~~Wsp~~-ti~~iL~~i~slL~~peN~--~~p~~~  133 (139)
T d2a4da1          83 MNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQPP  133 (139)
T ss_dssp             CTTBCTTTCBBCGGGSHHH-----HTCCTTC-CHHHHHHHHHHHHTSTTTT--TCCCCC
T ss_pred             cccCcCCCCEEcceecCcc-----cCCCccC-cHHHHHHHHHHHHCCCCCC--CCCCCC
Confidence            99998 5577776665421     4799998 9999999999999887 55  778776

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.96  E-value=2.3e-30  Score=222.20  Aligned_cols=115  Identities=17%  Similarity=0.286  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhcCC-CCeEEEeec-C--CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254           54 SHKKIMQEWKILEKHLP-ESIFVRVYE-N--RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN  129 (359)
Q Consensus        54 a~kRL~kEl~~L~k~~p-~gI~v~~~e-~--~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH  129 (359)
                      +.+||++|++.++++.+ .++.+...+ +  ++.+|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+++  |
T Consensus         5 ~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~--H   82 (136)
T d1jatb_           5 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN--L   82 (136)
T ss_dssp             HHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC--C
T ss_pred             hHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecccc--c
Confidence            68999999999999865 556655543 3  3888999999999999999999999999999999999999999987  9


Q ss_pred             CCcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCC
Q 018254          130 PNLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP  177 (359)
Q Consensus       130 PNVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~P  177 (359)
                      |||+ .+|.||+++|..      +.|+|++ ||.+||++|++||.+|+.
T Consensus        83 pnV~~~~G~icl~~l~~------~~Wsp~~-ti~~IL~~i~~lL~~P~n  124 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHTL------RDWKRAY-TMETLLLDLRKEMATPAN  124 (136)
T ss_dssp             TTBCTTTCBBCTTSHHH------HTCCTTC-CHHHHHHHHHHHHTSHHH
T ss_pred             cccccCCCeEECCCCcc------cCcCccC-cHHHHHHHHHHHHcCCCC
Confidence            9999 569999999863      7899998 999999999999988754

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.5e-20  Score=156.47  Aligned_cols=115  Identities=19%  Similarity=0.337  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhcCC---CCeEEEeecCCcceEEEEEecCCCCCcCCCeEEE--EEeCCCCCCCCCCeeeeccc---cccc
Q 018254           57 KIMQEWKILEKHLP---ESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFF--DLAFPADYPNHPPMVHYRSF---GLRL  128 (359)
Q Consensus        57 RL~kEl~~L~k~~p---~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f--~I~fP~dYP~~PP~V~f~T~---i~rf  128 (359)
                      ++.+|+..+.+..+   ++..+...++....|.+.|.|+.++||+||.|.+  +|.||.+||.+||.|.|.+.   ..++
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            44567776666554   5677788889999999999999999999999998  77799999999999988864   2367


Q ss_pred             CCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCC
Q 018254          129 NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYF  179 (359)
Q Consensus       129 HPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~  179 (359)
                      |||||.+|+||+++|.        +|.+..+++.++|..|+.+|.++.|.|
T Consensus        98 h~~V~~~G~V~lp~L~--------~W~~~~s~L~~ll~~L~~~f~~e~Pl~  140 (141)
T d1s1qa_          98 GKHVDANGKIYLPYLH--------EWKHPQSDLLGLIQVMIVVFGDEPPVF  140 (141)
T ss_dssp             SSSBCTTCBBCCHHHH--------TCCTTTCCHHHHHHHHHHHHHHSCSEE
T ss_pred             CCeECCCCCCcchhhc--------CCCcccccHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999997        455555599999999999999876643

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.1e-16  Score=138.63  Aligned_cols=113  Identities=18%  Similarity=0.246  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhcCCC---CeEEEeecCCcceEEEEEecCCCCCcCCCe---EEEEEeCCCCCCCCCCeeeecccc---
Q 018254           55 HKKIMQEWKILEKHLPE---SIFVRVYENRIDLLRAVIVGTAGTPYHDGL---FFFDLAFPADYPNHPPMVHYRSFG---  125 (359)
Q Consensus        55 ~kRL~kEl~~L~k~~p~---gI~v~~~e~~l~~w~~~I~GP~gTPYegG~---F~f~I~fP~dYP~~PP~V~f~T~i---  125 (359)
                      .+|+.+|+..+.++.+.   ...+...++....+...+.|.-.++|+|+.   |.+.|.||.+||+.||.|.|.+..   
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            46788888888777663   444556667677788889999999999995   789999999999999999998752   


Q ss_pred             ------cccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccC
Q 018254          126 ------LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE  175 (359)
Q Consensus       126 ------~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p  175 (359)
                            .++|||||.+|+|||++|.+|       |.|. |+|.+||.+|+++|.++
T Consensus       101 ~~~~~~i~~hp~Vd~~G~V~lp~L~~W-------~~~~-s~L~~ll~~l~~~f~~~  148 (152)
T d1uzxa_         101 NTISSSLPIQEYIDSNGWIALPILHCW-------DPAA-MNLIMVVQELMSLLHEP  148 (152)
T ss_dssp             CC----CGGGGGBCTTSCBCCHHHHSC-------CTTT-CCHHHHHHHHHTGGGSC
T ss_pred             cCCCcccccCCCCCCCCcEehHHhcCC-------CCcc-CcHHHHHHHHHHHhcCC
Confidence                  256999999999999999743       4555 59999999999999765

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.5e-05  Score=66.70  Aligned_cols=86  Identities=17%  Similarity=0.335  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCe----------EEEEEeCCCCCCCCCCeeee
Q 018254           52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGL----------FFFDLAFPADYPNHPPMVHY  121 (359)
Q Consensus        52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~----------F~f~I~fP~dYP~~PP~V~f  121 (359)
                      ..|..||..|+..|.+      ||.-...+-..|.-+=.-++||-|.|-+          |.+.+.+|..||..||.+..
T Consensus        24 e~W~~RLKEEy~aLI~------Yv~nNK~~dndWF~lesn~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi~l   97 (162)
T d2in1a1          24 ELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV   97 (162)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcceec
Confidence            4599999999998854      1111111222232222345555555543          44455679999999999986


Q ss_pred             cccccccCCCcCCCCceeecccc
Q 018254          122 RSFGLRLNPNLYANGRVCLSLLN  144 (359)
Q Consensus       122 ~T~i~rfHPNVy~~GkVCLslL~  144 (359)
                      -.-. .--.-.|..|+|||++-.
T Consensus        98 PeLd-GKTaKMYRGGkIClt~HF  119 (162)
T d2in1a1          98 PELD-GKTAKMYRGGKICLTDHF  119 (162)
T ss_dssp             GGGS-SSCSSSCGGGBCCCCTTS
T ss_pred             cccC-CchhhhhcCceeeccccc
Confidence            6532 114567899999997653

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.097  Score=40.44  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhcCCCCeEEEeecCCcceEEEEEec-C-C--CCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           58 IMQEWKILEKHLPESIFVRVYENRIDLLRAVIVG-T-A--GTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        58 L~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~G-P-~--gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      +..|+..|+.--++.+.+....++...+.+.|.- | .  +..-......+.+.||++||..+|.+.+.+.
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc
Confidence            5689999988888777665545444444444332 1 1  1112235678889999999999999987654

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.36  E-value=1.7  Score=33.91  Aligned_cols=72  Identities=13%  Similarity=0.081  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHhcCCCCeEEEeecCC-----cceEEEEEecC-CCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254           53 GSHKKIMQEWKILEKHLPESIFVRVYENR-----IDLLRAVIVGT-AGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF  124 (359)
Q Consensus        53 ~a~kRL~kEl~~L~k~~p~gI~v~~~e~~-----l~~w~~~I~GP-~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~  124 (359)
                      ....+-..|+..|+.=-++.+.+......     .....+.|... .+.....-.+.+.|.||.+||..+|.+.+...
T Consensus        10 ~~~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_          10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             cHHHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC
Confidence            34556678999998766665544322211     11223333321 12233446699999999999999999987654