Citrus Sinensis ID: 018258

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MDNSDASVDLAEVPSKGSVEQRESAVINPNSAAVSEASAGASGCSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSVGSNNSDSAPE
ccccccccccccccccccHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cccccccEcccccccccccccccccccccccHccHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
mdnsdasvdlaevpskgsveqresavinpnsaavseasagasgcsteerSEAQgiikkdvsvsesddtlknrkpentetrrksSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERkqnsvgsnnsdsape
mdnsdasvdlaevpskgsveqresavinpnsaavseASAGASGCSTEerseaqgiikkdvsvsesddtlknrkpentetrrksskrtfksekEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENaflkskceksdfTLIELVEERERMKKQleksknqkeKLESLCRSlqaerkqnsvgsnnsdsape
MDNSDASVDLAEVPSKGSVEQRESAVINPNsaavseasagasgcsTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSVGSNNSDSAPE
*********************************************************************************************FLEFTLKYQQVLAERDAAMAVRDKLESLC**********************************AIK*V************************LKQLADQYALTEQQYAQKLKQKTLELQIGELK****************LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFK***************************DFTLIEL***********************************************
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*****************************************************GIIKKDVSV*************************FKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERER***************ESLCRSLQA*****************
******S*D****************************************SEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDNSDASVDLAEVPSKGSVEQRESAVINPNSAAVSEASAGASGCSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxCEKSDFTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSVGSNNSDSAPE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
P40222546 Alpha-taxilin OS=Homo sap yes no 0.707 0.465 0.375 3e-30
Q6PAM1554 Alpha-taxilin OS=Mus musc yes no 0.665 0.431 0.384 8e-30
Q9NUQ3528 Gamma-taxilin OS=Homo sap no no 0.654 0.445 0.370 5e-27
Q8BHN1524 Gamma-taxilin OS=Mus musc no no 0.654 0.448 0.370 6e-27
Q8VBT1 685 Beta-taxilin OS=Mus muscu no no 0.671 0.351 0.344 2e-25
Q8N3L3 684 Beta-taxilin OS=Homo sapi no no 0.665 0.349 0.343 4e-24
Q9I969 676 Beta-taxilin OS=Gallus ga no no 0.665 0.353 0.355 5e-24
Q9BZA4181 Putative gamma-taxilin-li no no 0.286 0.569 0.388 2e-10
>sp|P40222|TXLNA_HUMAN Alpha-taxilin OS=Homo sapiens GN=TXLNA PE=1 SV=3 Back     alignment and function desciption
 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 157/274 (57%), Gaps = 20/274 (7%)

Query: 106 AERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKL 165
            E   A+  R KLESLCRELQR N+ L +E  + + E +  R ++++ FQ  + D+ +++
Sbjct: 229 GEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQM 288

Query: 166 EEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKL 225
           E+  +      +EN  L   LK+L +QY L E+   +  K K L+ Q+ + K++Q +E L
Sbjct: 289 EQHNERNSKLRQENMELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEML 348

Query: 226 --VQEQSQMK---LYAEQV-SQLLA-----TEKNLRLQLTADGEKFQQFQDALVKSNEVF 274
              +E+ Q +   L  E V SQ +       E +L+ QL    EKF++FQ+ L KS+EVF
Sbjct: 349 KEAEERHQREKDFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVF 408

Query: 275 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334
            TFKQE+EKM K IK+L+KE    +S+ E S+  L+E+ EE+    K+LE  + + ++LE
Sbjct: 409 TTFKQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEMAEEKTVRDKELEGLQVKIQRLE 468

Query: 335 SLCRSLQAER-------KQNSVGSNNS--DSAPE 359
            LCR+LQ ER       +  S G   S  DS PE
Sbjct: 469 KLCRALQTERNDLNKRVQDLSAGGQGSLTDSGPE 502
May be involved in intracellular vesicle traffic and potentially in calcium-dependent exocytosis in neuroendocrine cells.
Homo sapiens (taxid: 9606)
>sp|Q6PAM1|TXLNA_MOUSE Alpha-taxilin OS=Mus musculus GN=Txlna PE=2 SV=1 Back     alignment and function description
>sp|Q9NUQ3|TXLNG_HUMAN Gamma-taxilin OS=Homo sapiens GN=TXLNG PE=1 SV=2 Back     alignment and function description
>sp|Q8BHN1|TXLNG_MOUSE Gamma-taxilin OS=Mus musculus GN=Txlng PE=1 SV=1 Back     alignment and function description
>sp|Q8VBT1|TXLNB_MOUSE Beta-taxilin OS=Mus musculus GN=Txlnb PE=2 SV=2 Back     alignment and function description
>sp|Q8N3L3|TXLNB_HUMAN Beta-taxilin OS=Homo sapiens GN=TXLNB PE=1 SV=3 Back     alignment and function description
>sp|Q9I969|TXLNB_CHICK Beta-taxilin OS=Gallus gallus GN=TXLNB PE=2 SV=1 Back     alignment and function description
>sp|Q9BZA4|CY15B_HUMAN Putative gamma-taxilin-like protein CYorf15B OS=Homo sapiens GN=CYorf15B PE=5 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
225449112418 PREDICTED: alpha-taxilin [Vitis vinifera 0.905 0.777 0.806 1e-140
224112989 461 predicted protein [Populus trichocarpa] 0.991 0.772 0.721 1e-139
255577691454 taxilin, putative [Ricinus communis] gi| 0.974 0.770 0.724 1e-136
356574595436 PREDICTED: alpha-taxilin-like [Glycine m 0.949 0.782 0.719 1e-133
449452112457 PREDICTED: alpha-taxilin-like [Cucumis s 0.961 0.754 0.696 1e-131
357443361426 Beta-taxilin [Medicago truncatula] gi|35 0.905 0.762 0.742 1e-130
388508408426 unknown [Medicago truncatula] 0.905 0.762 0.739 1e-129
297792389412 hypothetical protein ARALYDRAFT_495147 [ 0.888 0.774 0.711 1e-119
22327703404 uncharacterized protein [Arabidopsis tha 0.894 0.794 0.702 1e-118
42573650405 uncharacterized protein [Arabidopsis tha 0.894 0.792 0.7 1e-117
>gi|225449112|ref|XP_002276892.1| PREDICTED: alpha-taxilin [Vitis vinifera] gi|296086051|emb|CBI31492.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/325 (80%), Positives = 287/325 (88%)

Query: 31  SAAVSEASAGASGCSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKS 90
           S  V+       G +TE  S+A     KDVS SES + LKNRK E +E +RKS+KRTFKS
Sbjct: 94  SPKVTNKGCSEPGEATEGGSDAPTTHLKDVSSSESIEHLKNRKLETSEVKRKSAKRTFKS 153

Query: 91  EKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDL 150
           EKEFLEF+LKYQQV+AERD A+AVRDKLESLCRELQRQNK+LMDECKRVS+EGQ LRLDL
Sbjct: 154 EKEFLEFSLKYQQVIAERDTAIAVRDKLESLCRELQRQNKLLMDECKRVSAEGQTLRLDL 213

Query: 151 SAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLE 210
           S KFQDAIKDVS KLEEQKD+CLSQLKENEMLR  LKQLADQY L+EQQ+AQKLKQKTLE
Sbjct: 214 STKFQDAIKDVSSKLEEQKDECLSQLKENEMLRNKLKQLADQYTLSEQQFAQKLKQKTLE 273

Query: 211 LQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKS 270
           LQ+ +LK +QHEEKL+QEQSQMKLYAEQVSQLL TEK+LRLQLTADGEKFQQFQ+AL+KS
Sbjct: 274 LQLADLKNQQHEEKLIQEQSQMKLYAEQVSQLLTTEKSLRLQLTADGEKFQQFQEALLKS 333

Query: 271 NEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 330
           NEVFETFKQEIEKMAKSIKELKKEN FLKSK EKSD TLIELVEERER+KKQLEK KNQK
Sbjct: 334 NEVFETFKQEIEKMAKSIKELKKENIFLKSKSEKSDVTLIELVEERERLKKQLEKMKNQK 393

Query: 331 EKLESLCRSLQAERKQNSVGSNNSD 355
           EKLESLCRSLQAER+QNS+GSN SD
Sbjct: 394 EKLESLCRSLQAERRQNSIGSNASD 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112989|ref|XP_002316353.1| predicted protein [Populus trichocarpa] gi|222865393|gb|EEF02524.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577691|ref|XP_002529722.1| taxilin, putative [Ricinus communis] gi|223530824|gb|EEF32688.1| taxilin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356574595|ref|XP_003555431.1| PREDICTED: alpha-taxilin-like [Glycine max] Back     alignment and taxonomy information
>gi|449452112|ref|XP_004143804.1| PREDICTED: alpha-taxilin-like [Cucumis sativus] gi|449485922|ref|XP_004157311.1| PREDICTED: alpha-taxilin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357443361|ref|XP_003591958.1| Beta-taxilin [Medicago truncatula] gi|355481006|gb|AES62209.1| Beta-taxilin [Medicago truncatula] Back     alignment and taxonomy information
>gi|388508408|gb|AFK42270.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297792389|ref|XP_002864079.1| hypothetical protein ARALYDRAFT_495147 [Arabidopsis lyrata subsp. lyrata] gi|297309914|gb|EFH40338.1| hypothetical protein ARALYDRAFT_495147 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22327703|ref|NP_199897.2| uncharacterized protein [Arabidopsis thaliana] gi|19698943|gb|AAL91207.1| unknown protein [Arabidopsis thaliana] gi|31711880|gb|AAP68296.1| At5g50840 [Arabidopsis thaliana] gi|332008616|gb|AED95999.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42573650|ref|NP_974921.1| uncharacterized protein [Arabidopsis thaliana] gi|332008617|gb|AED96000.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2157946405 AT5G50840 [Arabidopsis thalian 0.821 0.728 0.765 8.2e-115
UNIPROTKB|E1BGS4561 LOC100852159 "Uncharacterized 0.793 0.508 0.360 2.3e-39
UNIPROTKB|Q9I969 676 TXLNB "Beta-taxilin" [Gallus g 0.810 0.430 0.344 2.6e-39
UNIPROTKB|F1P0Q4 677 TXLNB "Beta-taxilin" [Gallus g 0.810 0.429 0.344 2.6e-39
UNIPROTKB|P40222546 TXLNA "Alpha-taxilin" [Homo sa 0.793 0.521 0.360 2.9e-39
UNIPROTKB|F1NLI4366 TXLNA "Uncharacterized protein 0.743 0.729 0.363 4.8e-39
UNIPROTKB|E2QYI1550 TXLNA "Uncharacterized protein 0.752 0.490 0.362 4.8e-39
UNIPROTKB|J9PA47561 TXLNA "Uncharacterized protein 0.752 0.481 0.362 4.8e-39
MGI|MGI:105968554 Txlna "taxilin alpha" [Mus mus 0.752 0.487 0.362 6.1e-39
UNIPROTKB|F1S6Z6 676 TXLNB "Uncharacterized protein 0.816 0.433 0.321 5.6e-37
TAIR|locus:2157946 AT5G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 228/298 (76%), Positives = 266/298 (89%)

Query:    61 SVSESDDTLKNRKPENT-ETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLE 119
             ++S+  D+LK +K +   E++RK SK  FKSEKEFLEF LKYQQVL+ERD+A+ VRDKLE
Sbjct:   107 TLSKEMDSLKPKKQQEVVESKRKGSKNMFKSEKEFLEFMLKYQQVLSERDSAITVRDKLE 166

Query:   120 SLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKEN 179
             SLCRELQRQNKMLM+ECKRVS+EGQ LR DLS KFQDAI DVSIKL+EQK++ L+QLKEN
Sbjct:   167 SLCRELQRQNKMLMEECKRVSTEGQTLRSDLSTKFQDAIMDVSIKLDEQKNESLTQLKEN 226

Query:   180 EMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQV 239
             EMLRT LK LADQ+ L+EQQ+ Q+LKQKTLELQI  LKIKQHEEKL+ EQSQMK+YA+QV
Sbjct:   227 EMLRTKLKHLADQFMLSEQQHEQRLKQKTLELQISALKIKQHEEKLIHEQSQMKVYADQV 286

Query:   240 SQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLK 299
             SQLL+TEKNLRLQLT+DG+KFQQFQDALVKSNEVFETFKQEI+KM+K+IKEL+KENAFLK
Sbjct:   287 SQLLSTEKNLRLQLTSDGDKFQQFQDALVKSNEVFETFKQEIDKMSKAIKELRKENAFLK 346

Query:   300 SKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSVGSNNSDSA 357
             +K EKSD TLIELVEERER+KK LEK+K QK+KLESLCRSLQAERKQ    +N++DSA
Sbjct:   347 NKTEKSDITLIELVEERERLKKLLEKTKKQKDKLESLCRSLQAERKQKE--TNSTDSA 402
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|E1BGS4 LOC100852159 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9I969 TXLNB "Beta-taxilin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0Q4 TXLNB "Beta-taxilin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P40222 TXLNA "Alpha-taxilin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLI4 TXLNA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYI1 TXLNA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PA47 TXLNA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:105968 Txlna "taxilin alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S6Z6 TXLNB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
pfam09728309 pfam09728, Taxilin, Myosin-like coiled-coil protei 4e-67
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
COG4942 420 COG4942, COG4942, Membrane-bound metallopeptidase 0.002
pfam09728 309 pfam09728, Taxilin, Myosin-like coiled-coil protei 0.003
pfam04156186 pfam04156, IncA, IncA protein 0.004
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein Back     alignment and domain information 
 Score =  213 bits (545), Expect = 4e-67
 Identities = 126/285 (44%), Positives = 176/285 (61%), Gaps = 7/285 (2%)

Query: 67  DTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQ 126
           +TL  R  E  +  ++  K   K +K   +   +  ++ +E   A+  R KLESLCRELQ
Sbjct: 25  ETLIKRLAELLKEMKRLEKDLKKLQKRGEQLQKEKDKLQSEHSKAILARSKLESLCRELQ 84

Query: 127 RQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNL 186
           + NK L +E K  S E +  R +L+ KFQ  +KD+  ++EE  +      +ENE LR  L
Sbjct: 85  KHNKTLKEENKARSDEEEEKRKELTEKFQSTLKDIQDQMEEHSNPNHKLCEENEELREKL 144

Query: 187 KQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAE-------QV 239
           K+L +QY L EQ + + LK K LE Q+ + K++Q +E+  QEQ + K   E       QV
Sbjct: 145 KELIEQYELREQHFEKLLKTKDLEQQLNDAKLEQAQEQAEQEQEKHKREKEILLKEAAQV 204

Query: 240 SQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLK 299
           S L  TEK LR QL    +KF++FQD L KSNEVF TFKQE+EKM+K IK+L+KEN   K
Sbjct: 205 STLKETEKELRAQLNLYSDKFKEFQDTLNKSNEVFLTFKQEMEKMSKKIKKLEKENLAWK 264

Query: 300 SKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 344
            K EKS+  L+E+ EER++  K++EK K + +KLE LCR+LQAER
Sbjct: 265 RKWEKSNKALLEMAEERQKRDKEIEKLKKKIDKLEKLCRALQAER 309

Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription. Length = 309
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein Back     alignment and domain information
>gnl|CDD|217933 pfam04156, IncA, IncA protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 100.0
KOG1850391 consensus Myosin-like coiled-coil protein [Cytoske 100.0
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.57
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.42
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.26
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.03
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.0
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.98
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.36
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.34
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.28
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 96.2
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.14
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.91
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 95.91
KOG2008 426 consensus BTK-associated SH3-domain binding protei 95.34
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.0
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.99
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 94.86
KOG0933 1174 consensus Structural maintenance of chromosome pro 94.44
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.57
PF13870177 DUF4201: Domain of unknown function (DUF4201) 93.56
PF00038312 Filament: Intermediate filament protein; InterPro: 93.55
PRK04778569 septation ring formation regulator EzrA; Provision 93.05
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 92.84
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 92.75
PRK11637 428 AmiB activator; Provisional 92.38
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.99
PF00038312 Filament: Intermediate filament protein; InterPro: 91.48
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 91.17
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 90.86
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 90.84
PRK03918 880 chromosome segregation protein; Provisional 90.36
KOG2129 552 consensus Uncharacterized conserved protein H4 [Fu 90.27
KOG0996 1293 consensus Structural maintenance of chromosome pro 90.16
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.05
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 89.85
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 89.79
PRK02224 880 chromosome segregation protein; Provisional 89.57
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 89.4
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 87.75
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 86.79
PRK11637 428 AmiB activator; Provisional 86.54
KOG0971 1243 consensus Microtubule-associated protein dynactin 86.31
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 85.95
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 85.86
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 85.73
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 84.9
PRK02224 880 chromosome segregation protein; Provisional 84.85
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 84.82
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 83.02
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 82.77
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 82.69
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 82.66
PHA02562 562 46 endonuclease subunit; Provisional 82.6
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 81.38
KOG0977546 consensus Nuclear envelope protein lamin, intermed 81.35
PF09789 319 DUF2353: Uncharacterized coiled-coil protein (DUF2 80.97
PF13851201 GAS: Growth-arrest specific micro-tubule binding 80.94
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 80.52
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 80.52
PRK01156 895 chromosome segregation protein; Provisional 80.35
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information 
Probab=100.00  E-value=1.8e-73  Score=553.74  Aligned_cols=282  Identities=47%  Similarity=0.631  Sum_probs=274.8

Q ss_pred             ccccccccCCCCCchhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHH
Q 018258           63 SESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSE  142 (359)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~r~~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~e  142 (359)
                      .+-++.+..+-.+....+|+.++.+..+++.+..+.+.+++++.|++++|++|+|||+||||||++|+.|++|+++++++
T Consensus        21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~e  100 (309)
T PF09728_consen   21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRARE  100 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 018258          143 GQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHE  222 (359)
Q Consensus       143 ee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~  222 (359)
                      ++.+|.+|++||+++|+||+++|+++++.+.+++++|..|++|||+|++||++||.||++++++++||+||++|||++++
T Consensus       101 ee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~  180 (309)
T PF09728_consen  101 EEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQ  180 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258          223 EKLVQEQSQMKLYAE-------QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKEN  295 (359)
Q Consensus       223 e~~~~Ek~q~k~l~e-------qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn  295 (359)
                      ..+.++..++..+.+       +|..|.++|.+|+.||++|++||++||+||+|||++|+|||+||++|+|+|++||||+
T Consensus       181 ~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~  260 (309)
T PF09728_consen  181 EEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKEN  260 (309)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888       9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258          296 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER  344 (359)
Q Consensus       296 ~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER  344 (359)
                      ..|++|||+||++||+|++||+.+.++++.+++|+++|++|||+||+||
T Consensus       261 ~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er  309 (309)
T PF09728_consen  261 QTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER  309 (309)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999999997

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1m1j_C 409 Fibrinogen gamma chain; coiled coils, disulfide ri 6e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 72.6 bits (178), Expect = 4e-14
 Identities = 59/308 (19%), Positives = 126/308 (40%), Gaps = 11/308 (3%)

Query: 46   TEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVL 105
             +  +E + + +K   + E  + L+ +    TE   ++ +   +   +  E      ++ 
Sbjct: 874  QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME 933

Query: 106  AERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKL 165
            A  +       +L++  +++Q+Q   L ++ +   +  Q L+L+        IK +   +
Sbjct: 934  ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA-DGKIKKMEDDI 992

Query: 166  EEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKT-LELQIGELKIK-QHEE 223
               +D      KE ++L   +  L    A  E++     K K   E  I EL+++ + EE
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 224  KLVQE--------QSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFE 275
            K  QE        + +     EQ+++L A    L+ QL    E+ Q     L        
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112

Query: 276  TFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 335
               ++I ++   I +L+++    K+   K++    +L EE E +K +LE + +     + 
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

Query: 336  LCRSLQAE 343
            L  S   +
Sbjct: 1173 LRGSDYKD 1180
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.75
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.89
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.74
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.18
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.96
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 94.02
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 93.46
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 92.53
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 92.31
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 90.62
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 90.44
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 89.91
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.82
3trt_A77 Vimentin; cytoskeleton, intermediate filament, alp 87.25
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 85.3
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 84.35
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.31
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 83.85
2v4h_A110 NF-kappa-B essential modulator; transcription, met 83.42
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 83.1
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 82.01
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 81.55
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.13  E-value=0.11  Score=45.05  Aligned_cols=26  Identities=8%  Similarity=-0.036  Sum_probs=14.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHh
Q 018258           84 SKRTFKSEKEFLEFTLKYQQVLAERD  109 (359)
Q Consensus        84 ~k~~~~ler~~~~~~~~~~qv~~Er~  109 (359)
                      .++|..++.++-.+......+..+..
T Consensus         5 ~~~~~~l~~~~~~~~~~~~~l~~~l~   30 (284)
T 1c1g_A            5 KKKMQMLKLDKENALDRADEAEADKK   30 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            35556666666666655555554443
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A* Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00