Citrus Sinensis ID: 018281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFYSMGDNS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHcccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccEEEEEcccccccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEEccccEcccHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEccccccEEEEEEEcccccccHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccc
Coil and Loop (DISEMBL)
manaywpyfdpeyeslslrinpprasvdnsscpectvvkvdsvnkpgILLEVVQVLSDLDLIITKayissdggwfmDVFHVIDQqgkkitdgkTIDYIEkalgpkghitagaktwpskqvgvhsvgdhtaieligrdrpgLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVnddttcravgdQTRLSLMEEQLKNILrgcddedsekVARTSFSMGFTHVDRRLHQMFfadrdyegggvttadqvdhtpsfkpeitverledkgysvvnvkCRDRAKLMFDIVCTLTDMQYVVFHAAissdgphasQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFYSMGDNS
Flexible Loop (DISEMBL)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIlrgcddedseKVARTSfsmgfthvDRRLHQMFFADRDYEGGGvttadqvdhtpsfkpeitverledkgysvvnvkcrdRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRrrvsevskfsfysmgdns
Low Complexity Region (SEG)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFYSMGDNS
Disordered region (IsUnstruct)
***AYWPYFDPEYESLSLRI**********SCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC********ARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFY******
Disordered Region (DISOPRED)
***AYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID**************************HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFA******************PSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSK***Y******
Disordered Region (DISEMBL)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFYSMGDNS
Disordered Region (DISPRO)
*ANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK******AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC******************H****L**MFFADRDY**************PSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFYSMG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEVSKFSFYSMGDNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.203	0.078	0.370	2e-08
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.296	0.111	0.330	6e-08
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.223	0.084	0.382	7e-08
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.189	0.072	0.405	9e-08
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.170	0.065	0.358	2e-07
Q8G312	934	[Protein-PII] uridylyltra	yes	no	0.254	0.097	0.326	2e-07
A5VN81	934	[Protein-PII] uridylyltra	yes	no	0.254	0.097	0.326	2e-07
C0RGK0	934	[Protein-PII] uridylyltra	yes	no	0.254	0.097	0.326	2e-07
Q8YES3	934	[Protein-PII] uridylyltra	yes	no	0.254	0.097	0.326	2e-07
Q57FN0	934	[Protein-PII] uridylyltra	yes	no	0.254	0.097	0.326	2e-07

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPRA + N+     +V++V+ +++PG+L E+   LSDL L I  A+I++ G   +D F+V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G+KI     I  I   L
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhizobium loti (strain MAFF303099) (taxid: 266835)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 58.9 bits (141), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 10  DPEYESLSLRIN----PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITK 65
           D  + S S R+     PPR  +DN++    TV++V+  ++PG+L +V   LS   L I+ 
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898

Query: 66  AYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPS 117
           A+I++ G   +DVF+V D  G KITD   +  + + L     +T+   T P+
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETL--LASLTSAPVTTPA 948

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PP   + NS   + TV++V+ +++PG+L E+  VLSDL L I  A I++ G   +D F+V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G+KI++     YI   L
Sbjct: 885 ADLVGQKISNENRRAYITARL 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PP  ++ NS   + TV++V+ +++PG+L E+  VLSDL L I  A I++ G   +D F+V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883

Query: 82  IDQQGKKIT 90
            D  G+KI+
Sbjct: 884 TDLVGQKIS 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR  +DN++    TV++V+  ++PG+L ++ + L++L L I+ A IS+ G   +DVF+V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G K+T    +  I + L
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain 1330) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1 (strain 9-941) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella abortus biovar 1 (strain 9-941) (taxid: 262698)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
302142726	466	unnamed protein product [Vitis vinifera]	0.952	0.731	0.814	1e-168
359492290	465	PREDICTED: uncharacterized protein LOC10	0.952	0.733	0.814	1e-168
225457853	447	PREDICTED: uncharacterized protein LOC10	0.952	0.762	0.814	1e-168
255558468	447	amino acid binding protein, putative [Ri	0.952	0.762	0.820	1e-167
224066763	444	predicted protein [Populus trichocarpa]	0.944	0.761	0.820	1e-164
224082380	445	predicted protein [Populus trichocarpa]	0.946	0.761	0.817	1e-163
356509344	445	PREDICTED: uncharacterized protein LOC10	0.946	0.761	0.794	1e-160
356515959	445	PREDICTED: uncharacterized protein LOC10	0.946	0.761	0.785	1e-158
356552731	448	PREDICTED: uncharacterized protein LOC10	0.952	0.761	0.776	1e-157
356546978	449	PREDICTED: uncharacterized protein LOC10	0.952	0.759	0.771	1e-156

>gi|302142726|emb|CBI19929.3| unnamed protein product [Vitis vinifera]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/345 (81%), Positives = 309/345 (89%), Gaps = 4/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 20  MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 79

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 80  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 139

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 140 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 199

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 200 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 257

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 258 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 315

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISSDGP+ASQEY+IRHMDGC LD EGEKERVIKCLEAAIRRRVSE
Sbjct: 316 ISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSE 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492290|ref|XP_003634395.1| PREDICTED: uncharacterized protein LOC100250578 isoform 2 [Vitis vinifera]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/345 (81%), Positives = 309/345 (89%), Gaps = 4/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 19  MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 78

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 79  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 138

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 139 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 198

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 199 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 256

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 257 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 314

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISSDGP+ASQEY+IRHMDGC LD EGEKERVIKCLEAAIRRRVSE
Sbjct: 315 ISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSE 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457853|ref|XP_002268570.1| PREDICTED: uncharacterized protein LOC100250578 isoform 1 [Vitis vinifera] gi|147789965|emb|CAN73861.1| hypothetical protein VITISV_007291 [Vitis vinifera]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/345 (81%), Positives = 309/345 (89%), Gaps = 4/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 1   MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 61  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 121 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 180

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 181 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 238

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 239 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISSDGP+ASQEY+IRHMDGC LD EGEKERVIKCLEAAIRRRVSE
Sbjct: 297 ISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSE 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558468|ref|XP_002520259.1| amino acid binding protein, putative [Ricinus communis] gi|223540478|gb|EEF42045.1| amino acid binding protein, putative [Ricinus communis]

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 283/345 (82%), Positives = 309/345 (89%), Gaps = 4/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS RINPPR SVDN+SC ECT++KVDS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENLSTRINPPRVSVDNTSCNECTLIKVDSMNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMD+FHV DQQGKKI D KTIDYIEKALGPK +     KTWP K+V
Sbjct: 61  FIITKAYISSDGGWFMDIFHVTDQQGKKIIDSKTIDYIEKALGPKEYNKDELKTWPGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGD+TAIELIGRDRPGLLSEI+AVLANL FNVAAAEVWTHNRRIACV+YVND TTC
Sbjct: 121 GVHSVGDYTAIELIGRDRPGLLSEITAVLANLHFNVAAAEVWTHNRRIACVVYVNDYTTC 180

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           R V D TRLS+MEEQLKNILRGC  ED EK +RTSFSMGFTH+DRRLHQMFFADRDYEGG
Sbjct: 181 RPVDDPTRLSVMEEQLKNILRGC--EDDEKASRTSFSMGFTHIDRRLHQMFFADRDYEGG 238

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           GVT  ++V++  SFKP+ITVER  +KGYSVV+V C+DRAKL+FDIVCTLTDMQYVVFHA 
Sbjct: 239 GVT--NEVEYPSSFKPKITVERCGEKGYSVVSVCCKDRAKLLFDIVCTLTDMQYVVFHAT 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISSDGP+ASQEYYIRHMDGC LDTEGEKERVIKCLEAAIRRRV E
Sbjct: 297 ISSDGPYASQEYYIRHMDGCTLDTEGEKERVIKCLEAAIRRRVCE 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066763|ref|XP_002302203.1| predicted protein [Populus trichocarpa] gi|222843929|gb|EEE81476.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/345 (82%), Positives = 306/345 (88%), Gaps = 7/345 (2%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA+  WPYFDPEYE+LS RINPPR SVDN+SC + T+VKVDS+NKPGILLEVVQVL+DLD
Sbjct: 1   MASVCWPYFDPEYENLSTRINPPRVSVDNTSCNDSTLVKVDSMNKPGILLEVVQVLTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           LIITKAYISSDGGWFMDVFHV DQQGKKITD KTIDYIEKALGPK        TW  K+V
Sbjct: 61  LIITKAYISSDGGWFMDVFHVTDQQGKKITDIKTIDYIEKALGPKSQ--EEVTTWADKRV 118

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVG HTAIELIG+DRPGLLSEISAVLANL FNV AAEVWTHN RIACV+YVNDDTT 
Sbjct: 119 GVHSVGGHTAIELIGKDRPGLLSEISAVLANLHFNVVAAEVWTHNSRIACVVYVNDDTTS 178

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+ME+QLKNILRGC+++++    RTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 179 RAVADPTRLSIMEDQLKNILRGCENDEA---GRTSFSMGFTHVDRRLHQMLFADRDYEGG 235

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V T  +VD+ PS KP+ITVER EDKGYSVV V+C+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 236 IVAT--EVDYPPSIKPKITVERCEDKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHAT 293

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISSDGPHASQEYYIRHMDGC+LDTEGEKERVIKCLEAAIRRRVSE
Sbjct: 294 ISSDGPHASQEYYIRHMDGCVLDTEGEKERVIKCLEAAIRRRVSE 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082380|ref|XP_002306671.1| predicted protein [Populus trichocarpa] gi|222856120|gb|EEE93667.1| predicted protein [Populus trichocarpa]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 282/345 (81%), Positives = 301/345 (87%), Gaps = 6/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS RINPPR SVDN+SC + T++KVDS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENLSTRINPPRVSVDNTSCSDSTLIKVDSMNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           LIITKAYISSDGGWFMDVFHV DQQGKKI D KTIDYIEKALGPKG       TW  K V
Sbjct: 61  LIITKAYISSDGGWFMDVFHVTDQQGKKIADLKTIDYIEKALGPKGQ--EEVTTWSGKPV 118

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIEL GRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACV+YVNDDTT 
Sbjct: 119 GVHSVGDHTAIELTGRDRPGLLSEISAVLANLHFNVVAAEVWTHNRRIACVVYVNDDTTS 178

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS ME+QLKNILRGCDD+  EK  RTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 179 RAVDDPTRLSAMEDQLKNILRGCDDD--EKEGRTSFSMGFTHVDRRLHQMLFADRDYEGG 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V T  ++   PSFKP+ITVE  E+KGYSVV V+C+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 IVAT--EIHDPPSFKPKITVEHCEEKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISSD PHASQEYYIRHMDGC+LDTEGEK+RVIKCLEAAIRRRVSE
Sbjct: 295 ISSDAPHASQEYYIRHMDGCVLDTEGEKDRVIKCLEAAIRRRVSE 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509344|ref|XP_003523410.1| PREDICTED: uncharacterized protein LOC100789173 [Glycine max]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/345 (79%), Positives = 301/345 (87%), Gaps = 6/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S R+NPPR S+DN+SC +CT++KVDSVNKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRMNPPRVSMDNASCHDCTLIKVDSVNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEKALGPK   T G K WPSK+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKALGPKSQSTEGVKNWPSKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIGRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLHFNVFAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +AV +  RLSLMEEQL NILRGC   D EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QAVDEANRLSLMEEQLNNILRGC---DGEKVARTSFSMGSTHMDRRLHQMLFADRDYESY 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V  A +VD  PS +P+IT+ER E+KGYSVV+VKC+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 AV--AREVDSPPSLRPKITIERCEEKGYSVVSVKCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           +SSDGP+A QEY+IRHMDGC LDT+GEKERVI+C+EAAIRRRVSE
Sbjct: 295 VSSDGPYALQEYFIRHMDGCTLDTQGEKERVIQCIEAAIRRRVSE 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515959|ref|XP_003526664.1| PREDICTED: uncharacterized protein LOC100797293 [Glycine max]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/345 (78%), Positives = 296/345 (85%), Gaps = 6/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S R+NPPR SVDN+SC +CT++K+DSVNKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRMNPPRVSVDNASCHDCTLIKIDSVNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            +ITKAYISSDGGWFMDVFHV DQQGKKITD KTID IEKALGPK   T G K WPSK V
Sbjct: 61  FVITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDLIEKALGPKSKSTEGVKNWPSKHV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGD+TAIELIGRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSVGDYTAIELIGRDRPGLLSEISAVLANLHFNVFAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +   D  RLSLMEEQL NILRGC   D EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QVADDPKRLSLMEEQLNNILRGC---DGEKVARTSFSMGSTHMDRRLHQMLFADRDYESY 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V  A +VD  PS +P IT+ER E+KGYSVV+VKC+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 AV--AREVDSPPSLRPRITIERCEEKGYSVVSVKCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           +SSDGP+A QEY+IRHMDGC LDT+GEKERVI+C+EAAIRRRVSE
Sbjct: 295 VSSDGPYALQEYFIRHMDGCTLDTQGEKERVIQCIEAAIRRRVSE 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552731|ref|XP_003544716.1| PREDICTED: uncharacterized protein LOC100789044 [Glycine max]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/345 (77%), Positives = 301/345 (87%), Gaps = 4/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S RINPPR SVDN SC +CT++K DS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRINPPRVSVDNDSCHDCTLIKFDSINKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEK LGPKG  T G   W  K+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKTLGPKGQSTEGVNCWQGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHS+GDHTAIELIGRDRPGLLSEISAVLA+L+FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSIGDHTAIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +A+ D  RLS+MEEQL +ILRGC  ED EKVARTSF+MGFTH+DRRLHQM FADRDYE  
Sbjct: 180 QAMDDSKRLSIMEEQLNHILRGC--EDDEKVARTSFTMGFTHMDRRLHQMLFADRDYESV 237

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G+TT D VD  PSF+P+I +ER+ +KGYSVV+V+C+DRAKLMFDIVCTLTDM+YVVFHA 
Sbjct: 238 GLTTTD-VDCPPSFRPKIRIERIVEKGYSVVSVRCKDRAKLMFDIVCTLTDMEYVVFHAT 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISS+G +ASQEY+IRHMDGC LDTEGEKERVIKC+EAAI+RRVSE
Sbjct: 297 ISSEGQYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIQRRVSE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546978|ref|XP_003541896.1| PREDICTED: uncharacterized protein LOC100797658 [Glycine max]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/345 (77%), Positives = 297/345 (86%), Gaps = 4/345 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           M    WPYFDPEYE+ S RINPPR SVDN SC +CT++K DS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MTKVCWPYFDPEYENFSNRINPPRVSVDNDSCHDCTLIKFDSINKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEK LGPKG  T G K+W  K+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKTLGPKGQSTEGVKSWKGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHS+GDHT IELIGRDRPGLLSEISAVLA+L+FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSIGDHTVIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +A+ D  RLS++EEQL +ILRGC  ED EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QAMDDSKRLSIIEEQLNHILRGC--EDDEKVARTSFSMGITHMDRRLHQMLFADRDYESA 237

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           GVTT D VD  P F+P I +ER+ +KGYSVV+VKC+DRAKLMFDIVCTLTDM+YVVFHA 
Sbjct: 238 GVTTTD-VDCPPCFRPNIRIERIVEKGYSVVSVKCKDRAKLMFDIVCTLTDMEYVVFHAT 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
           ISS+G +ASQEY+IRHMDGC LDTEGEKER IKC+EAAI+RRVSE
Sbjct: 297 ISSEGQYASQEYFIRHMDGCTLDTEGEKERAIKCIEAAIQRRVSE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.952	0.752	0.762	8.6e-143
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.913	0.718	0.541	1.7e-91
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.899	0.743	0.528	1.8e-85
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.581	0.416	0.495	1.3e-84
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.930	0.730	0.511	3.4e-84
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.958	0.719	0.462	1.7e-73
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.583	0.473	0.477	6.7e-49
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.824	0.657	0.408	8.5e-49
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.815	0.712	0.215	3.4e-05
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.212	0.252	0.272	9.9e-05

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
 Identities = 263/345 (76%), Positives = 291/345 (84%)

Query:     1 MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
             MA  YWPYFDPEYE+LS RINPP  S+DN+SC ECT+VKVDS+NKPGILLEVVQVL+DLD
Sbjct:     1 MAKVYWPYFDPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLD 60

Query:    61 LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
             L ITKAYISSDGGWFMDVFHV DQQG K+TD KTIDYIEK LGPKGH +A   TWP K+V
Sbjct:    61 LTITKAYISSDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRV 120

Query:   121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
             GVHS+GDHT+IE+I RDRPGLLSE+SAVLA+L  NV AAE WTHNRRIACVLYVND+ T 
Sbjct:   121 GVHSLGDHTSIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATS 180

Query:   181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
             RAV D  RLS MEEQL N+LRGC+++D EK ARTS S+G THVDRRLHQMFFADRDYE  
Sbjct:   181 RAVDDPERLSSMEEQLNNVLRGCEEQD-EKFARTSLSIGSTHVDRRLHQMFFADRDYEA- 238

Query:   241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
              VT  D    +  F+P+ITVE  E+KGYSV+NV C DR KLMFDIVCTLTDMQY+VFHA 
Sbjct:   239 -VTKLDD-SASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHAT 296

Query:   301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
             ISS G HASQEY+IRH DGC LDTEGEKERV+KCLEAAI RRVSE
Sbjct:   297 ISSSGSHASQEYFIRHKDGCTLDTEGEKERVVKCLEAAIHRRVSE 341

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 182/336 (54%), Positives = 235/336 (69%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D EYE L  R+NPPR  +DN SC + TV++VDS N+ GILLEVVQ+L+DL+L ITKAYIS
Sbjct:    12 DNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYIS 71

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHT 129
             SDGGWFMDVF+V DQ G K+TD   +DYI+K+LGP+   +   ++     VGV    D T
Sbjct:    72 SDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-----VGVIPSTDST 126

Query:   130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL 189
              IEL G DRPGLLSE+SAVL +L+ +V  AE+WTHN R A V+ V DD T   + D  RL
Sbjct:   127 VIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERL 186

Query:   190 SLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVD 249
             S ++  L+N+L+G    ++ + A+T  S G  H DRRLHQM F DRDYE   V     + 
Sbjct:   187 SRIKNLLRNVLKG---SNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQ 243

Query:   250 HTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHAS 309
                  +P++ V+   DK YSVV V+C+DR KL+FD VCTLTDMQYVVFH ++ ++G  A 
Sbjct:   244 DERQ-RPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAF 302

Query:   310 QEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
             QEYY+RH+DG  + +E EK+RVI+CLEAAI+RRVSE
Sbjct:   303 QEYYVRHIDGSPVKSEAEKQRVIQCLEAAIKRRVSE 338

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 178/337 (52%), Positives = 234/337 (69%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D EY  L  R+NPPR  +DN++  + TV++VDSVNK G LLEVVQVL+D++L+I KAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQ-VGVHSVGDH 128
             SDGGWFMDVF VIDQ G KI D + +DYI+K +       AG    P +  VGV    ++
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRI----ESNAGWFIPPLRSSVGVMPTDEY 118

Query:   129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             T+IEL G DRPGLLSE+SAVL +L  NV  AE+WTHN R A V++V D++T  A+ D  R
Sbjct:   119 TSIELAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIR 178

Query:   189 LSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQV 248
             LS ++E L N++R        + A+T FS   TH +RRLHQ+ F DRDYEG  V  A   
Sbjct:   179 LSTIKELLCNVVR---TNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYEG--VKRA--- 230

Query:   249 DHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHA 308
               T + +P +T+  +E K Y+VV ++ +DR KL+FD+VCTLTDMQYVVFH  +S++   A
Sbjct:   231 -RTSASRPSVTLMNIE-KDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEA 288

Query:   309 SQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
              QE+YIRH+DG  +++E E+ERVI+CLEAAI RR SE
Sbjct:   289 YQEFYIRHVDGLPINSEAEQERVIQCLEAAIERRASE 325

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 106/214 (49%), Positives = 141/214 (65%)

Query:     1 MANAYWPYFDPEYESLSLRI-NPP-RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSD 58
             M    WPYFDP++++L  RI  PP R  +DN S  +CTVVKV+S NK G+LLEVVQ+L+D
Sbjct:     1 MQKVCWPYFDPDFDNLGERIYGPPCRVYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTD 60

Query:    59 LDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH----ITAGAKT 114
             ++LIITK+YISSDGGWFMDVFHV D+ G K+TD   I++I+ A+G        I A    
Sbjct:    61 MNLIITKSYISSDGGWFMDVFHVKDEHGNKLTDKSVINHIKHAIGTSRRESDFIKASEAN 120

Query:   115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV 174
               S +  +   G+HTAIE+ G DRPGL SEI A  A+L  NV  A  W+HN R+AC+ YV
Sbjct:   121 NNSLEPQLADHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLACIAYV 180

Query:   175 NDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDS 208
             +DD T   + D +RL+ +E+ L  ++R   D  S
Sbjct:   181 SDDNTHTPIDDPSRLASIEDHLSTVIRATADPAS 214

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 173/338 (51%), Positives = 222/338 (65%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D E      R+NPPR  +DN  C + TV+KVDS NK GILLEVVQVL++L+L I KAYIS
Sbjct:    12 DDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYIS 71

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHT 129
             SDGGWFMDVF+V DQ G K+TD   ++YI K+LGP    +  + +  S  +GV    D+T
Sbjct:    72 SDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPD-ESSCFSPSMRST-IGVKQSVDYT 129

Query:   130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL 189
              +EL G DRPGLLSE+ AVL +L+ NV  AE+WTH  + A VL V D+ TC A+ D  RL
Sbjct:   130 VVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERL 189

Query:   190 SLMEEQLKNILRGCDDEDSEKVARTSFSMGF--THVDRRLHQMFFADRDYEGGGVTTADQ 247
             S + + L  +L G       +  +T+ S     TH DR+LHQ+ FADRDY+       D 
Sbjct:   190 SKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWE-NNVDD 248

Query:   248 VDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH 307
              D      P++ V  L D  YS+V +KC+DR KL+FD V TLTDM YVV HA+I ++GP 
Sbjct:   249 EDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQ 308

Query:   308 ASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
             A QEYYIRH DG  + +E E++RVIKCL+AAI+RRVSE
Sbjct:   309 AYQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSE 346

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 166/359 (46%), Positives = 223/359 (62%)

Query:     1 MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
             M  AY P  D E ESL  RINPPR  VDN S PECT++KVDS NK GILL++VQVL+DLD
Sbjct:     2 MEIAYQPRIDSEIESLVERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLD 61

Query:    61 LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL--GPKGHITAGAKTWPSK 118
             L+I+K YISSDG WFMDVFHV DQ G K+TD   I YI++A+     G IT   ++   +
Sbjct:    62 LVISKCYISSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLKR 121

Query:   119 QVGVHSVG-DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDD 177
             +V    V  +HTA E+ G +RPGLLSEISAVL+++  +V AA  WTH+ R A V+Y+ D 
Sbjct:   122 EVQQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDG 181

Query:   178 TTCRAVGDQTRLSLMEEQLKNILRGCD--DEDSEKVART----SFSMGFTHVDRRLHQMF 231
                  + D  R + +++ L  ++       + S  V R        +G+ H +RRLH++ 
Sbjct:   182 FNGGPIIDPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELM 241

Query:   232 FADRDYEG--GGVTTADQVDHTPSFKPE---ITVERLEDKGYSVVNVKCRDRAKLMFDIV 286
             + + DYE         D+ D     + E   +T+E     GYS+VNVKCRDR KL+FD V
Sbjct:   242 YGEGDYENCFDCDCFGDRCDALWRGRCERIHVTIEACN--GYSMVNVKCRDRPKLLFDTV 299

Query:   287 CTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
             C L ++Q+VVFHA   + G  A QEY+IR  +G  L+TEG++ER+  CL AAI RR S+
Sbjct:   300 CALKELQFVVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRRASQ 358

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 104/218 (47%), Positives = 146/218 (66%)

Query:   129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             TA+EL G DR GLLSE+ AVL++L  +V  A++WTHN R+A V+Y+ D  +   + D  R
Sbjct:   114 TALELTGTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHR 173

Query:   189 LSLMEEQLKNILRGCDDEDSEKVARTSFSM-GFTHVDRRLHQMFFADRDYEGGGVTTADQ 247
             +S +E +LKN+L G  D D    A+T  ++    H++RRLHQ+ F DRDYE      + +
Sbjct:   174 ISKIEGRLKNVLNG--DNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYE----RRSKK 227

Query:   248 VDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH 307
              + +P     +TV+   ++GYSVVNV CRDR KL+FD+VCTLTDM+Y VFHA I++    
Sbjct:   228 HERSPMVV--VTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQ 285

Query:   308 ASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE 345
             A  E+YIRH DG  + +E E++RVI+CLEAA+ RR  E
Sbjct:   286 AHLEFYIRHKDGSPISSEAERQRVIQCLEAAVERRALE 323

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 130/318 (40%), Positives = 180/318 (56%)

Query:    12 EYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD 71
             EYE L +R+N PR  +DN  CP  TVVK+DS   PGILLE VQ+L+D++L I KAYISSD
Sbjct:     9 EYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISSD 68

Query:    72 GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAI 131
             G W MDVFHV D  G K+TD   I YIEK++    H     KT      G+      TA+
Sbjct:    69 GKWNMDVFHVSDLNGDKLTDENLIRYIEKSI-ETSHY---CKT--EGYTGL------TAL 116

Query:   132 ELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAV-GDQTRLS 190
             EL G DR GLLSE+ AVLA+L  +V  A+ WTHN RIA ++YV D  +   + GD  R+ 
Sbjct:   117 ELTGTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQ 176

Query:   191 LMEEQLKNILRGCDDEDSEKVARTSFSMGF-THVDRRLHQMFFADRDYEGG-GVTTAD-- 246
              +E QL+N+L+   D+  +   RT  S G  TH++RRLHQ  F DRDYE    +  +   
Sbjct:   177 RVEGQLRNLLKA--DDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEKKFDIEKSPIV 234

Query:   247 QVDHTPSFKPEITVERLEDKGYSVVNVKCR--DRAKLMFDI-VCTLTDMQYVVFHAAISS 303
              V + P     +   + +D+   + +V C   D A ++F   + T+ +  ++ F+    S
Sbjct:   235 SVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVR-HS 293

Query:   304 DGPHASQEYYIRHMDGCI 321
             DG   S E   + +  C+
Sbjct:   294 DGHPVSSEPERQRLIQCL 311

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 67/311 (21%), Positives = 134/311 (43%)

Query:    36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
             +V+ ++  +K G+  ++ ++L    L I +  +S+DG W   VF VI   GK  T    +
Sbjct:    21 SVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWCYLVFWVI---GKPNTRWNLL 77

Query:    96 DYIEKALGPKGHITAG-AKTWPS-KQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLR 153
                     P      G ++ + S  +     + D   ++L   DR GLL +++ VL  L 
Sbjct:    78 KMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLACSDRTGLLYDVTEVLYKLE 137

Query:   154 FNVAAAEV-WTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVA 212
              N+   ++  T + ++  + +V D  T   +G   R + + E L++ + G D   S  + 
Sbjct:   138 INIEKVKISTTPDGKVMDLFFVTD--TRELLGTVKRRNEVYEYLRDAI-G-DSMISYDIE 193

Query:   213 RTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVN 272
                  +        + +  F+  D  G   +      HT S    I V+      +++++
Sbjct:   194 LVGPEITACSTSSSVAETLFSS-DVSGEHSSGL----HTSS-NVSIAVDNSLSSAHTLIH 247

Query:   273 VKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGC-ILDTEGEKER 330
             + C+D   L++DI+ T  D    + +   +   G +   + +I   DG  ILD+  +   
Sbjct:   248 ITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDLFIVQSDGRKILDSS-KLNA 306

Query:   331 VIKCLEAAIRR 341
             +I  L A +++
Sbjct:   307 LITRLRAELQQ 317

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
 Identities = 21/77 (27%), Positives = 41/77 (53%)

Query:    23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
             P   +D  + PE T+V++   N+ G L++ ++ L DL L + K  +S++G      F + 
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    83 DQQ-GKKITDGKTIDYI 98
              +  G+K+ D   ++ I
Sbjct:   155 KRDTGRKVEDPDLLEQI 171

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	5e-43
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	8e-39
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	2e-31
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	5e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-13
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	2e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-11
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-10
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	8e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	6e-08
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-07
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	4e-07
pfam01842	66	pfam01842, ACT, ACT domain	1e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	5e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	7e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-05
pfam01842	66	pfam01842, ACT, ACT domain	3e-05
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	4e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	6e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	8e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	4e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	8e-04
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	0.002
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	0.003
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.003
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	0.003
cd04928	68	cd04928, ACT_TyrKc, Uncharacterized, N-terminal AC	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  143 bits (362), Expect = 5e-43
 Identities = 56/75 (74%), Positives = 62/75 (82%)

Query: 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGE 327
           YSVV V+CRDR KL+FD+VCTLTDM YVVFHA I +DG  A QEYYIRH DG  L TEGE
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 328 KERVIKCLEAAIRRR 342
           ++RVIKCLEAAI RR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  132 bits (334), Expect = 8e-39
 Identities = 54/72 (75%), Positives = 58/72 (80%)

Query: 35  CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKT 94
           CT+VKVDS  KPGILLE VQVL+DLDL ITKAYISSDGGWFMDVFHV DQ G K+TD   
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 95  IDYIEKALGPKG 106
           I YIEK+LG   
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  112 bits (283), Expect = 2e-31
 Identities = 43/74 (58%), Positives = 54/74 (72%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           TAIEL G DRPGLLSE+ AVLA+L  NV  A  WTHN R+ACV+YV D+ T   + D  R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 189 LSLMEEQLKNILRG 202
           L+ +E++L N+LRG
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +EL   DRPGLL++++ VLA L  N+ +A++ T   R   V YV D        D  R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL--DPER 58

Query: 189 LSLMEEQLKNIL 200
              +   L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 71.4 bits (176), Expect = 5e-16
 Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 36  TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
           TVV+V + ++PG+L ++ +VL+DL L I  A IS+ G   +DVF+V D  G+ + D + I
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 96  DYIEKAL 102
             +E+AL
Sbjct: 60  ARLEEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEK 328
           +VV V   DR  L+ DI   L D+   +  A IS+ G  A   +Y+   DG  LD E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 329 ERVIKCLEAAI 339
            R+ + LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +E+   DRPGLL++I+ VLA+L  N+  A + T   R   V YV D        D  R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL--DPER 58

Query: 189 LSLMEEQLKNIL 200
           ++ +EE L++ L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 32/81 (39%), Positives = 52/81 (64%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++DN +    TV++V+  ++PG+L ++ + LSDL+L I  A+I++ G   +DVF+V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G KIT+      I +AL
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 61.4 bits (150), Expect = 3e-10
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 23/166 (13%)

Query: 67  YISSDGGWFMDVFHVIDQQGKKITDGKTI----DYIEKALGPKGHITA----GAKTWPSK 118
           + ++DG   +D F + D  G+   + + +      IE AL   G +        +T P K
Sbjct: 766 FTTTDG-RALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL--SGEVRLPEALAKRTKPKK 822

Query: 119 QVGVHSV-----------GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR 167
           +     V              T IE+ GRDRPGLL +++  L++L  N+A+A + T+  R
Sbjct: 823 RARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGER 882

Query: 168 IACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVAR 213
              V YV  D     + ++ R + +   L   L   + E       
Sbjct: 883 AVDVFYVT-DLFGLKITNEARQAAIRRALLAALAEGEAEARAARPP 927

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 46  PGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKT----IDYIEK 100
           PG+  +V   L+ L L +  A + ++  G  +D F V D  G      +     +  +  
Sbjct: 679 PGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVD 738

Query: 101 ALGPKGHITAGAKTWPSKQVGV-------------HSVGDHTAIELIGRDRPGLLSEISA 147
            L              +++  +              +    T +E+   DRPGLL+ +  
Sbjct: 739 VLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR 798

Query: 148 VLANLRFNVAAAEVWTHNRRIACVLYVND 176
            L  L  ++ +A++ T   +   V YV D
Sbjct: 799 TLEELGLSIQSAKITTFGEKAEDVFYVTD 827

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 51.3 bits (124), Expect = 8e-09
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 36  TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
           TV+++ ++++PG+L +V +VL++L L I  A I++ G    DVF+V D  G+   D +  
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQ 59

Query: 96  DYIEKALG 103
           + +  ALG
Sbjct: 60  EALRAALG 67

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 26/71 (36%), Positives = 45/71 (63%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++ N++  + T+++V ++++PG+L  V + L +L L I  A I++ G    DVF+V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 82  IDQQGKKITDG 92
            D  G K+TD 
Sbjct: 826 TDLFGLKLTDE 836

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGD 185
            D T +E+   DRPGLL+ ++ V A+L  ++ +A++ T   R+  V  V  D   +A+  
Sbjct: 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV-TDADGQALNA 847

Query: 186 QTRLSLMEEQLKNIL 200
           + R SL++  L+ +L
Sbjct: 848 ELRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG 103
           ++ G+L +V +V  +  L +T+A IS+ G   ++VF+V D  G  + D KTI+ + + +G
Sbjct: 10  DRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68

Query: 104 P 104
           P
Sbjct: 69  P 69

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +E+   DRPGLL+E+   LA+   N+ +    T   +               V D+  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKA-------GIVFIVVVVDEED 53

Query: 189 LSLMEEQLKNILR 201
           L    E LK +L 
Sbjct: 54  LEAALEALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 17/142 (11%)

Query: 52  VVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKALG-----P 104
            V  +  L+L I  A I +S   + +D + V+D  G+ I  +   I+ I + L      P
Sbjct: 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780

Query: 105 KGHITAGAKTWPSK--------QVGVHS--VGDHTAIELIGRDRPGLLSEISAVLANLRF 154
             + T   +  P +        QV + +      T +E+I  DRPGLL+ I  +      
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840

Query: 155 NVAAAEVWTHNRRIACVLYVND 176
           ++  A++ T   R+  V ++ D
Sbjct: 841 SLQNAKIATLGERVEDVFFITD 862

Length = 895

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           ++PG+   +   L  L L I  A I ++  G+ +D F V+D  G+ I + + +  I +AL
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++  ++  + TV++V ++++PG+L  +  V +DL L +  A I++ G    DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 82  IDQQGKKITD 91
            D  G+ +  
Sbjct: 838 TDADGQALNA 847

Length = 867

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG--GWFMDVFHVIDQQG 86
          TV++V   ++PG+L EV   L+D  + I     S+ G     + +  V+D++ 
Sbjct: 1  TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEED 53

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 17/70 (24%), Positives = 39/70 (55%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           P + ++ N +    TV+++ + ++PG+L  + ++  + DL +  A I++ G    DVF +
Sbjct: 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860

Query: 82  IDQQGKKITD 91
            D   + ++D
Sbjct: 861 TDADNQPLSD 870

Length = 895

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQG 86
          + V   ++PG+L +V+ VL++  + IT     + G G   D+F V+D  G
Sbjct: 1  LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG 50

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR 166
           + + G DRPGLL+++ +VLA    N+ + E  T   
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGD 36

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 30/204 (14%)

Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
           D+PGL ++++  LA L  +V  A+V T    +A   +V  D        +     + + L
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGL 736

Query: 197 KNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKP 256
            ++L G   +     AR +                               ++ H  +  P
Sbjct: 737 VDVLAGLAKDPDTISARRA----------------------------RRRRLQHF-AVPP 767

Query: 257 EITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316
            +T+     +  +++ V+  DR  L+  +  TL ++   +  A I++ G  A   +Y+  
Sbjct: 768 RVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827

Query: 317 MDGCILDTEGEKERVIKCLEAAIR 340
           + G  L T+ E++R+++ L A++ 
Sbjct: 828 LFGLKL-TDEEEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA 169
           I +   DRPGLL++I+ V+A  + N+ +    T +  +A
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLA 39

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

Query: 73  GWFMDVFHVIDQQGKKITDGKTIDYIE----KALGPKGHITAGAKTWPSKQVGVHSV--- 125
           G+ +D F V+D   + +     I+ +E    + L  +  +   +K   S+QV    +   
Sbjct: 717 GYALDTFQVLDP-EEDVHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPR 775

Query: 126 --------GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163
                   G +  + +   DRPGLL  I+ VLA  R +V  A++ T
Sbjct: 776 VDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821

Length = 856

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACV---LYVND 176
             +E+   DRPGLL++I+ V++N + N+ +    + +  IA +   L V D
Sbjct: 5   ADLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKD 55

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           ++  + L+VV  +    L I  A I +S  G+ +D F V +  GK +   +    +E+AL
Sbjct: 686 DQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRR-RQLEQAL 744

Query: 103 GPKGHITAGAKTWPSKQVGVH------------------SVGDHTAIELIGRDRPGLLSE 144
                  A       K                          + T +EL   DR GLL++
Sbjct: 745 -----TKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQ 799

Query: 145 ISAVLANLRFNVAAAEVWT 163
           +S V + L  N+  A++ T
Sbjct: 800 VSQVFSELNLNLLNAKITT 818

Length = 854

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 42  SVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGK---TIDY 97
           S ++P +   V   L   +L +  A I +S  G  MD F V++  G  ++  +       
Sbjct: 708 SPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKA 767

Query: 98  IEKALGPKGHITAGAKTWPSK--------QVG---VHSVGDHTAIELIGRDRPGLLSEIS 146
           +E+AL          +  P+K        +V     H+    + +ELI  D+PGLL+ + 
Sbjct: 768 LEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDR-RSYMELIALDQPGLLARVG 826

Query: 147 AVLANLRFNVAAAEVWT 163
            + A+L  ++  A + T
Sbjct: 827 KIFADLGISLHGARITT 843

Length = 884

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR    + + P+ TV++V + ++PG+L  + + L    + +  A +++ G   +DVF+V
Sbjct: 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYV 753

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
               G  + D +    +E+A+
Sbjct: 754 TGAAGGPLADAR--AAVEQAV 772

Length = 774

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQ---GKKITDG 92
           ++K+   ++ G+L +V +VL +L+L I +  +S+   G  +D+F + D +     K    
Sbjct: 2   LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRRE 61

Query: 93  KTIDYIEKALGPKG 106
           +T DY+   LG   
Sbjct: 62  ETYDYLRAVLGDSM 75

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153200 cd04928, ACT_TyrKc, Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVI 82
          +   + +KP +L ++  +L DL L I +A+  S+D G  +D+F V 
Sbjct: 4  ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.98
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.98
PRK05007	884	PII uridylyl-transferase; Provisional	99.98
PRK05007	884	PII uridylyl-transferase; Provisional	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.97
PRK04374	869	PII uridylyl-transferase; Provisional	99.97
PRK03059	856	PII uridylyl-transferase; Provisional	99.97
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.96
PRK05092	931	PII uridylyl-transferase; Provisional	99.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.96
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK05092	931	PII uridylyl-transferase; Provisional	99.95
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.95
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.95
PRK03381	774	PII uridylyl-transferase; Provisional	99.94
PRK03059	856	PII uridylyl-transferase; Provisional	99.94
PRK03381	774	PII uridylyl-transferase; Provisional	99.93
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.9
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.86
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.84
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.75
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.71
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.67
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.64
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.64
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.63
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.61
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.61
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.61
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.6
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.54
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.52
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.46
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.37
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.37
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.37
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.32
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.32
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.3
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.3
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.22
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.0
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.9
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.77
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.73
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.54
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.53
COG4747	142	ACT domain-containing protein [General function pr	98.51
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.51
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.5
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.45
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.41
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.38
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.25
PRK00194	90	hypothetical protein; Validated	98.14
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.12
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.12
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.11
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.1
PRK00194	90	hypothetical protein; Validated	98.08
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.04
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.0
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.99
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.97
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.95
COG4747	142	ACT domain-containing protein [General function pr	97.93
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.75
COG3830	90	ACT domain-containing protein [Signal transduction	97.73
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.73
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.63
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.62
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.6
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.58
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.56
PRK07431	587	aspartate kinase; Provisional	97.5
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.5
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.49
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.46
COG3830	90	ACT domain-containing protein [Signal transduction	97.41
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.35
PRK07431	587	aspartate kinase; Provisional	97.3
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.26
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.22
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.2
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.15
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.14
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.11
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.1
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.09
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.08
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.06
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.03
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.03
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.02
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.01
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.01
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.01
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.0
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.96
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.93
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.93
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.9
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.87
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.83
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.78
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.75
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.74
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.73
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.72
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.72
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.62
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.62
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.57
PRK08577	136	hypothetical protein; Provisional	96.56
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.54
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.52
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.51
PRK04435	147	hypothetical protein; Provisional	96.51
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.46
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.43
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.38
cd02116	60	ACT ACT domains are commonly involved in specifica	96.35
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.33
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.27
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.26
PRK04435	147	hypothetical protein; Provisional	96.26
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.26
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.26
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.25
PRK08577	136	hypothetical protein; Provisional	96.24
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.2
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.16
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.06
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.01
PRK06635	404	aspartate kinase; Reviewed	95.98
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.95
PRK07334	403	threonine dehydratase; Provisional	95.94
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.91
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.8
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.8
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.79
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.6
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.58
cd02116	60	ACT ACT domains are commonly involved in specifica	95.41
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.39
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.27
PRK07334	403	threonine dehydratase; Provisional	95.23
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.23
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.22
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.21
PRK06635	404	aspartate kinase; Reviewed	95.08
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.99
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.94
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.82
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.81
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.78
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	94.52
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.49
PRK06291	465	aspartate kinase; Provisional	94.41
PRK08210	403	aspartate kinase I; Reviewed	94.26
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.22
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	94.13
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.9
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.88
PRK11899	279	prephenate dehydratase; Provisional	93.8
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.8
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.62
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	93.49
PRK09034	454	aspartate kinase; Reviewed	93.48
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.13
PRK06291	465	aspartate kinase; Provisional	93.07
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.03
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	92.71
PRK08210	403	aspartate kinase I; Reviewed	92.62
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.48
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.34
COG1707	218	ACT domain-containing protein [General function pr	92.23
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	92.18
COG1707	218	ACT domain-containing protein [General function pr	92.18
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	92.07
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	91.8
PRK06382	406	threonine dehydratase; Provisional	91.49
PRK09034	454	aspartate kinase; Reviewed	91.38
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.36
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	91.2
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.19
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	91.17
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	91.05
PRK08818	370	prephenate dehydrogenase; Provisional	90.61
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.59
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.53
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	90.27
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.98
PRK06382	406	threonine dehydratase; Provisional	89.89
PLN02551	521	aspartokinase	89.83
PRK09181	475	aspartate kinase; Validated	89.49
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	89.44
PRK06545	359	prephenate dehydrogenase; Validated	88.67
PRK06545	359	prephenate dehydrogenase; Validated	88.59
PRK08198	404	threonine dehydratase; Provisional	88.53
PRK09084	448	aspartate kinase III; Validated	88.44
PRK06349	426	homoserine dehydrogenase; Provisional	88.23
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.18
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	88.09
PRK11899	279	prephenate dehydratase; Provisional	88.01
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	87.83
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	87.26
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.55
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	86.31
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	85.86
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	85.73
PRK06349	426	homoserine dehydrogenase; Provisional	85.56
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	84.73
PRK08818	370	prephenate dehydrogenase; Provisional	84.43
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	84.39
PRK08198	404	threonine dehydratase; Provisional	84.07
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	83.71
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	83.62
PRK12483	521	threonine dehydratase; Reviewed	83.14
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	83.13
COG2150	167	Predicted regulator of amino acid metabolism, cont	83.09
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	82.98
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	82.86
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	82.86
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	81.91
PRK09224	504	threonine dehydratase; Reviewed	81.77
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	81.47
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	81.23
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	81.17
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	80.87
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	80.86
COG4492	150	PheB ACT domain-containing protein [General functi	80.75
PRK11898	283	prephenate dehydratase; Provisional	80.65
PLN02551	521	aspartokinase	80.03

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.98  E-value=3e-31  Score=282.53  Aligned_cols=197  Identities=20%  Similarity=0.281  Sum_probs=166.7

Q ss_pred             CCCCCCCCCChH----HHHHHhhc-CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCE
Q 018281            1 MANAYWPYFDPE----YESLSLRI-NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGW   74 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~-~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~   74 (358)
                      |+++||.+++|+    |++++... ..|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+
T Consensus       638 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~  717 (854)
T PRK01759        638 CPEDYFLRNTPKQIAWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY  717 (854)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE
Confidence            689999999999    88888665 56888999999999999999999999999999999999999999999998 8999


Q ss_pred             EEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC----CCcc---------cCCceeeeecCCCCeEEEEEEeCCcccH
Q 018281           75 FMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT----AGAK---------TWPSKQVGVHSVGDHTAIELIGRDRPGL  141 (358)
Q Consensus        75 ~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~----~~~r---------~~~~~~v~~~~~~~~t~v~V~~~DrpGL  141 (358)
                      ++|+|+|++++|.++. +..+++|++.|...+...    ..++         .++++.++++.+..+|+|+|.++|||||
T Consensus       718 alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL  796 (854)
T PRK01759        718 VLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL  796 (854)
T ss_pred             EEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence            9999999999999875 445555555544333221    1011         1223345557888999999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       142 L~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      ||+|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.|+.++++ +.|+++|.++|
T Consensus       797 L~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        797 LAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence            99999999999999999999999999999999999 68999976655 88999998776

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.98  E-value=4.5e-31  Score=281.13  Aligned_cols=185  Identities=16%  Similarity=0.245  Sum_probs=161.3

Q ss_pred             eeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          120 VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       120 v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ++++.+.++++|+|+++||||||++|+++|+.+|+||.+|+|.| .+|++.|+|+|++ .+|.++ +++++++|++.|.+
T Consensus       669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~-~~~~~~~l~~~L~~  746 (854)
T PRK01759        669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLL-EFDRRRQLEQALTK  746 (854)
T ss_pred             EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCC-CHHHHHHHHHHHHH
Confidence            44577789999999999999999999999999999999999998 8999999999999 588888 46788999999999


Q ss_pred             HHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCc
Q 018281          199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR  278 (358)
Q Consensus       199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Dr  278 (358)
                      +|.+...    .  ....        ++.+      +             ..++.++|+|.|+|+.+..+|+|+|.|+||
T Consensus       747 aL~~~~~----~--~~~~--------~~~~------~-------------~~~~~~~~~V~~dn~~s~~~T~iev~a~Dr  793 (854)
T PRK01759        747 ALNTNKL----K--KLNL--------EENH------K-------------LQHFHVKTEVRFLNEEKQEQTEMELFALDR  793 (854)
T ss_pred             HHcCCCC----c--chhc--------cccc------c-------------ccCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence            9987543    0  1100        0100      0             016788999999999999999999999999


Q ss_pred             chhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       279 pGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      |||||+|+++|.++|++|++|||+|.|++|+|+|||++.+|.|+.++ ++++|+++|.++|+
T Consensus       794 pGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~-~~~~l~~~L~~~l~  854 (854)
T PRK01759        794 AGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEE-ERKALKSRLLSNLS  854 (854)
T ss_pred             hHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChH-HHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999975 44999999998874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.98  E-value=9.9e-31  Score=279.41  Aligned_cols=187  Identities=17%  Similarity=0.215  Sum_probs=163.0

Q ss_pred             eeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          120 VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       120 v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      +++..+.++++|+|+++||||||++|+++|+.+|+||.+|+|+| .+|++.|+|+|++ .+|.++ +++++++|++.|.+
T Consensus       693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~-~~~~~~~I~~~L~~  770 (884)
T PRK05007        693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPL-SQDRHQVIRKALEQ  770 (884)
T ss_pred             EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCC-CHHHHHHHHHHHHH
Confidence            44567779999999999999999999999999999999999998 6679999999999 688888 46788999999999


Q ss_pred             HHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCc
Q 018281          199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR  278 (358)
Q Consensus       199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Dr  278 (358)
                      +|.+...    .  .. .       .++..      +.            ..++.++++|.|+|+.+..+|+|+|.|.||
T Consensus       771 aL~~~~~----~--~~-~-------~~~~~------~~------------~~~~~~~~~V~~d~~~s~~~TvlEV~a~DR  818 (884)
T PRK05007        771 ALTQSSP----Q--PP-K-------PRRLP------AK------------LRHFNVPTEVSFLPTHTDRRSYMELIALDQ  818 (884)
T ss_pred             HHcCCCC----C--cc-c-------ccccc------cc------------cCCCCCCCEEEEccCCCCCeEEEEEEeCCc
Confidence            9977543    0  11 1       11110      10            016788999999999999999999999999


Q ss_pred             chhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281          279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (358)
Q Consensus       279 pGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  341 (358)
                      |||||+|+++|.++|++|++|+|+|.|++|+|+|||++.+|.|+. ++.++.|+++|.++|+.
T Consensus       819 pGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        819 PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             hHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999 67899999999999976

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=8.6e-31  Score=279.88  Aligned_cols=199  Identities=20%  Similarity=0.275  Sum_probs=167.8

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCC
Q 018281            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~--~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g   73 (358)
                      |+++||.+++|+    |++++.+.  .+|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|
T Consensus       661 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg  740 (884)
T PRK05007        661 CRADYFLRHTPNQLAWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG  740 (884)
T ss_pred             CChHHhcCCCHHHHHHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC
Confidence            689999999999    99999876  57899999999999999999999999999999999999999999999998 678


Q ss_pred             EEEEEEEEEeCCCCCCCChhHHHHHHH----HHCCCCCCCC-Ccc---------cCCceeeeecCCCCeEEEEEEeCCcc
Q 018281           74 WFMDVFHVIDQQGKKITDGKTIDYIEK----ALGPKGHITA-GAK---------TWPSKQVGVHSVGDHTAIELIGRDRP  139 (358)
Q Consensus        74 ~~~d~f~V~~~~g~~~~~~~~~~~l~~----~L~~~~~~~~-~~r---------~~~~~~v~~~~~~~~t~v~V~~~Drp  139 (358)
                      +++|+|+|++.+|.++. +..+++|++    +|.+...... .++         .++++.++++.++.+|+|+|.++|||
T Consensus       741 ~alD~F~V~d~~g~~~~-~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRp  819 (884)
T PRK05007        741 MAMDTFIVLEPDGSPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQP  819 (884)
T ss_pred             eEEEEEEEECCCCCCCC-HHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence            99999999999998874 344444554    4543321111 111         11223445578889999999999999


Q ss_pred             cHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       140 GLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      ||||+|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.++. +++.+.|+++|.++|..
T Consensus       820 GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999 6889886 67788999999988854

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=2.1e-30  Score=276.90  Aligned_cols=202  Identities=18%  Similarity=0.293  Sum_probs=168.6

Q ss_pred             CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCC---CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe
Q 018281            1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSC---PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~---~~p~V~~~~~~~---~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (358)
                      |+++||.+++++    |++++..+   +.|.|.+.+.+.   .+.++|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus       660 ~~~~Y~l~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T  739 (895)
T PRK00275        660 LGDDYFLRHTAGDIAWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT  739 (895)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE
Confidence            689999999999    99999875   467787887775   58999999999999999999999999999999999987


Q ss_pred             -eCCEEEEEEEEEeCCCCCCC-ChhHHHHHHHHHCCCCCCC----C--Ccc---------cCCceeeeecCCCCeEEEEE
Q 018281           71 -DGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT----A--GAK---------TWPSKQVGVHSVGDHTAIEL  133 (358)
Q Consensus        71 -~~g~~~d~f~V~~~~g~~~~-~~~~~~~l~~~L~~~~~~~----~--~~r---------~~~~~~v~~~~~~~~t~v~V  133 (358)
                       .+|+++|+|+|++++|.++. ++..+++|++.|...+..+    .  .++         .++.+.+..+.+.++|+|+|
T Consensus       740 t~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V  819 (895)
T PRK00275        740 SSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEI  819 (895)
T ss_pred             cCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEE
Confidence             79999999999999999754 3355565655554333211    1  111         11222344577789999999


Q ss_pred             EeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCC
Q 018281          134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (358)
Q Consensus       134 ~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~  203 (358)
                      +++||||||++|+++|+.+|+||++|+|.|.++++.|+|||++ .+|.++.+++++++|++.|.++|.+.
T Consensus       820 ~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        820 IAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999 68999888788999999999999654

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=7e-29  Score=263.78  Aligned_cols=199  Identities=21%  Similarity=0.276  Sum_probs=160.9

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCEEEEec-CCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eC
Q 018281            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDN-SSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG   72 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~--~~p~V~~~~-~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~   72 (358)
                      |+++||.+++++    |++++..+  +.|.|.+.. .+..+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus       649 l~~~Y~~~~~~~~I~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~  728 (869)
T PRK04374        649 MPDENFLRFRPEQLAWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPH  728 (869)
T ss_pred             CCchhhcCCCHHHHHHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCC
Confidence            789999999999    99998774  456666544 67779999999999999999999999999999999999998 89


Q ss_pred             CEEEEEEEEEeCCCCCCCC-hhHHHHHHHHHCCCCCCCC-Ccc----------cCCceeeeecCCCCeEEEEEEeCCccc
Q 018281           73 GWFMDVFHVIDQQGKKITD-GKTIDYIEKALGPKGHITA-GAK----------TWPSKQVGVHSVGDHTAIELIGRDRPG  140 (358)
Q Consensus        73 g~~~d~f~V~~~~g~~~~~-~~~~~~l~~~L~~~~~~~~-~~r----------~~~~~~v~~~~~~~~t~v~V~~~DrpG  140 (358)
                      |+++|+|+|++++|..... ....+.|+++|.+...... .++          .++.+.+.++.+.++|+|+|++.||||
T Consensus       729 g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG  808 (869)
T PRK04374        729 DAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG  808 (869)
T ss_pred             CEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence            9999999999988864211 1234555556655332111 111          112223444677799999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       141 LL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ||++|+++|+.+|+||++|+|+|.++++.|+|||++ .+|.++.++++ +.|+++|.++|+
T Consensus       809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            999999999999999999999999999999999999 58888766555 899999998874

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=6.4e-29  Score=264.52  Aligned_cols=196  Identities=20%  Similarity=0.306  Sum_probs=160.2

Q ss_pred             CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eC
Q 018281            1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG   72 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~---~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~   72 (358)
                      |+++||.+++|+    |++++.++   +.|.|.+.+.+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .+
T Consensus       637 ~~~~Yf~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~  716 (856)
T PRK03059        637 LDVGYFLRHDAADIAWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRH  716 (856)
T ss_pred             CChHHhccCCHHHHHHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCC
Confidence            689999999999    99999875   46888898888889999999999999999999999999999999999987 89


Q ss_pred             CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC----CC--Cccc---------CCceeeeecCCCCeEEEEEEeCC
Q 018281           73 GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI----TA--GAKT---------WPSKQVGVHSVGDHTAIELIGRD  137 (358)
Q Consensus        73 g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~----~~--~~r~---------~~~~~v~~~~~~~~t~v~V~~~D  137 (358)
                      |+++|+|+|++++|. ...+..+++|++.|...+..    ..  .++.         ++...+..+.+.++|+|+|+++|
T Consensus       717 g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~D  795 (856)
T PRK03059        717 GYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSAND  795 (856)
T ss_pred             CeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCC
Confidence            999999999998777 34444555555554433322    11  1110         11122334667799999999999


Q ss_pred             cccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          138 RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       138 rpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      |||||++|+++|+.+|+||++|+|+|.++++.|+|+|++    .+..+++++++|++.|.++|+
T Consensus       796 rpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        796 RPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999966    224467888999999988764

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.96  E-value=1.2e-28  Score=263.87  Aligned_cols=198  Identities=22%  Similarity=0.280  Sum_probs=166.4

Q ss_pred             CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eC
Q 018281            1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG   72 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~---~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~   72 (358)
                      |+++||.+++|+    |++++.++   +.|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .+
T Consensus       627 ~~~~y~~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~  706 (850)
T TIGR01693       627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKD  706 (850)
T ss_pred             CCchhhcCCCHHHHHHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecC
Confidence            689999999999    99999875   46889888877789999999999999999999999999999999999995 89


Q ss_pred             CEEEEEEEEEeCCCCCCCChhHHHHHHHH----HCCCCCCCC--Ccc-----------cCCceeeeecCCCCeEEEEEEe
Q 018281           73 GWFMDVFHVIDQQGKKITDGKTIDYIEKA----LGPKGHITA--GAK-----------TWPSKQVGVHSVGDHTAIELIG  135 (358)
Q Consensus        73 g~~~d~f~V~~~~g~~~~~~~~~~~l~~~----L~~~~~~~~--~~r-----------~~~~~~v~~~~~~~~t~v~V~~  135 (358)
                      |+++|+|+|++.+|.++.+++.+++|++.    |.+....+.  ..+           .++++.++++.+..+|+|+|.|
T Consensus       707 g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~  786 (850)
T TIGR01693       707 GVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRA  786 (850)
T ss_pred             CEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEE
Confidence            99999999999999988776555555544    444322111  111           1122334557788999999999


Q ss_pred             CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       136 ~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      .||||||++|+++|.++|+||.+|+|.|.++++.|+|+|++ ..|.|+.+ ++.+.|+++|.++|
T Consensus       787 ~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       787 LDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             CCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999 68888876 77888999988765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.3e-28  Score=262.15  Aligned_cols=202  Identities=23%  Similarity=0.333  Sum_probs=170.5

Q ss_pred             CCCCCCCCCChH----HHHHHhhc----CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-e
Q 018281            1 MANAYWPYFDPE----YESLSLRI----NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D   71 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~----~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~   71 (358)
                      |+++||.+++++    |++++...    .++.|.+++.+..+.++|+|+++||||||++||++|+.+||||++|+|+| .
T Consensus       690 ~~~~yf~~~~~~~i~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~  769 (931)
T PRK05092        690 HYPAYWLAVDLDTQARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT  769 (931)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec
Confidence            689999999999    99999875    33688899888889999999999999999999999999999999999998 7


Q ss_pred             CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC----CCC--cc-----------cCCceeeeecCCCCeEEEEEE
Q 018281           72 GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI----TAG--AK-----------TWPSKQVGVHSVGDHTAIELI  134 (358)
Q Consensus        72 ~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~----~~~--~r-----------~~~~~~v~~~~~~~~t~v~V~  134 (358)
                      +|+++|+|+|++++|.+..+++.++.|++.|...+..    +..  ++           .++.+.++++.+..+|+|+|.
T Consensus       770 dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~  849 (931)
T PRK05092        770 DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVN  849 (931)
T ss_pred             CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEE
Confidence            9999999999999888766655666666655433321    110  11           012233455777789999999


Q ss_pred             eCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCC
Q 018281          135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (358)
Q Consensus       135 ~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~  203 (358)
                      ++||||||++|+++|+++|+||.+|+|.|.++++.|+|+|++ .+|.++.++++++.|++.|.++|.+.
T Consensus       850 ~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        850 GRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             ECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999 68999988888899999999999654

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.96  E-value=3.5e-28  Score=260.27  Aligned_cols=186  Identities=22%  Similarity=0.320  Sum_probs=160.6

Q ss_pred             ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE-ecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~-T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      .....+.|+|+|+++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|+|++ .+|.++.+++++++|++.|.++|
T Consensus       662 ~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L  740 (850)
T TIGR01693       662 GTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVL  740 (850)
T ss_pred             ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence            34457999999999999999999999999999999999999 48999999999999 68888877778999999999999


Q ss_pred             cCCCCCcchhhccccccccccchhhh-hhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcc
Q 018281          201 RGCDDEDSEKVARTSFSMGFTHVDRR-LHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRA  279 (358)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Drp  279 (358)
                      .+...      .+..+..      ++ ..      +.            ..++.++|+|.|+|+.+.++|+|+|.|.|||
T Consensus       741 ~~~~~------~~~~~~~------~~~~~------~~------------~~~~~~~~~V~~d~~~s~~~t~~~v~~~Drp  790 (850)
T TIGR01693       741 AGLAK------DPDTISA------RRARR------RR------------LQHFAVPPRVTILNTASRKATIMEVRALDRP  790 (850)
T ss_pred             cCCCc------ccccccc------ccCCc------cc------------ccCCCCCCeEEEccCCCCCeEEEEEEECCcc
Confidence            87543      1111100      00 10      00            1157889999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      ||||+|+++|.++|++|++|+|.|.|+++.|+|||++..|.|+.+ ++++.|+++|.++|
T Consensus       791 Gll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       791 GLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999997 78899999999876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1e-27  Score=256.28  Aligned_cols=188  Identities=20%  Similarity=0.278  Sum_probs=162.5

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCC-ChHHHHHHHHHHHHHHcCC
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVG-DQTRLSLMEEQLKNILRGC  203 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~-~~~~~~~L~~~L~~~L~~~  203 (358)
                      .+.+.|.|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|++ .+|.++. +++++++|++.|.++|.+.
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            47999999999999999999999999999999999987 7899999999999 5888753 4578999999999999876


Q ss_pred             CCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHH
Q 018281          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMF  283 (358)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~  283 (358)
                      ..      +...+       .+|..      +.            ..++.++++|.|+++.+.++|+|+|.|.||||||+
T Consensus       781 ~~------~~~~~-------~~~~~------~~------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa  829 (895)
T PRK00275        781 DD------YPTII-------QRRVP------RQ------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLA  829 (895)
T ss_pred             Cc------cchhh-------hhhhh------hh------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHH
Confidence            53      11111       12211      00            01567889999999999999999999999999999


Q ss_pred             HHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccCC
Q 018281          284 DIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE  345 (358)
Q Consensus       284 ~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~~  345 (358)
                      +|+.+|..+|++|..|+|.|.|++|.|+|||++.+|.++.+++.+++|+++|.++|....++
T Consensus       830 ~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~  891 (895)
T PRK00275        830 RIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEK  891 (895)
T ss_pred             HHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999998888999999999999766544

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=7.8e-27  Score=248.22  Aligned_cols=181  Identities=20%  Similarity=0.230  Sum_probs=155.6

Q ss_pred             cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       123 ~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ....+.+.|+|+++|+||||++||++|+.+|+||.+|+|+| .+|.+.|+|+|.+ ..+.+   .++++++++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence            45668999999999999999999999999999999999998 8999999999999 46654   3568889999999998


Q ss_pred             CCCCCcchhhccccccccccchhhh-hhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcch
Q 018281          202 GCDDEDSEKVARTSFSMGFTHVDRR-LHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK  280 (358)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpG  280 (358)
                      +...      +.. +       .+| ..      +.            ..++.++|+|.|+|+.+.++|+|+|.|.||||
T Consensus       761 ~~~~------~~~-~-------~~~~~~------~~------------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG  808 (869)
T PRK04374        761 GDLQ------KVR-P-------ARRAVP------RQ------------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPG  808 (869)
T ss_pred             CCCC------ccc-c-------ccccCc------cc------------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence            7543      111 1       011 10      10            12678999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      |||+|+.+|+++|++|++|+|+|.|++|.|+|||++.+|.++.+++ +++|+++|.++|+
T Consensus       809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~-~~~l~~~L~~~l~  867 (869)
T PRK04374        809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESA-RQALRDALCACLD  867 (869)
T ss_pred             HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999988754 4999999999885

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.2e-26  Score=248.11  Aligned_cols=194  Identities=21%  Similarity=0.386  Sum_probs=165.3

Q ss_pred             eecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       121 ~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ......+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|++ .+|.+..+++++++|++.|.++
T Consensus       725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~  803 (931)
T PRK05092        725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDA  803 (931)
T ss_pred             EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHH
Confidence            3456668999999999999999999999999999999999998 8999999999999 5787776778899999999999


Q ss_pred             HcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcc
Q 018281          200 LRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRA  279 (358)
Q Consensus       200 L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~Drp  279 (358)
                      +.+...      +...+       .+|...     +. .          ..++.++|+|.|+|+.+.++|+|+|.+.|||
T Consensus       804 l~~~~~------~~~~~-------~~r~~~-----~~-~----------~~~~~~~~~V~~~~~~s~~~t~i~I~~~Drp  854 (931)
T PRK05092        804 LSGEVR------LPEAL-------AKRTKP-----KK-R----------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRP  854 (931)
T ss_pred             HcCCCC------Ccccc-------ccccCc-----cc-c----------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcC
Confidence            976543      12111       111100     00 0          1157888999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccC
Q 018281          280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVS  344 (358)
Q Consensus       280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~  344 (358)
                      |||++|+++|.++|++|.+|+|.|.|+++.|+|||++.+|.++.+++.+++|+++|.++|.....
T Consensus       855 GLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~  919 (931)
T PRK05092        855 GLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEA  919 (931)
T ss_pred             cHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999999999999988899999999999965443

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.9e-27  Score=237.14  Aligned_cols=198  Identities=21%  Similarity=0.273  Sum_probs=160.5

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCC
Q 018281            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (358)
Q Consensus         1 ~~~~yf~~~~~~----h~~~~~~~--~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g   73 (358)
                      +.++||.+++++    |++++.++  ++|.|.++..+..+.++|+||++|+|.||+.+|+.+...|+||++|+|+| .+|
T Consensus       644 ~~~~yflr~~~~~iawH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG  723 (867)
T COG2844         644 CYANYFLRHSARDIAWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG  723 (867)
T ss_pred             ccccceeecCHHHHhHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC
Confidence            467899999999    99999876  77999988888889999999999999999999999999999999999998 899


Q ss_pred             EEEEEEEEEeCCCCCCCChhHHHHHHHHH----CCCCCCCCCcc----------cCCceeeeecCCCCeEEEEEEeCCcc
Q 018281           74 WFMDVFHVIDQQGKKITDGKTIDYIEKAL----GPKGHITAGAK----------TWPSKQVGVHSVGDHTAIELIGRDRP  139 (358)
Q Consensus        74 ~~~d~f~V~~~~g~~~~~~~~~~~l~~~L----~~~~~~~~~~r----------~~~~~~v~~~~~~~~t~v~V~~~Drp  139 (358)
                      +++|+|+|++++|.++.. .+...++..|    ...-..+..++          .+|+..+....+...|+++|.+.|||
T Consensus       724 ~alDtfiv~~~~g~~~~~-dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRp  802 (867)
T COG2844         724 YALDTFIVLEPDGFPVEE-DRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRP  802 (867)
T ss_pred             ceeeeEEEecCCCCccch-hHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcc
Confidence            999999999999998774 3444444333    32222221111          11222233366668999999999999


Q ss_pred             cHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       140 GLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      |||++++++|++++++|++|+|+|.|+++.|+|+|++ ..|.++. ++..+.+.+.|.+++.
T Consensus       803 GLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         803 GLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             cHHHHHHHHHHhcccceeeeeeccccccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999 6888884 4555666666665554

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-26  Score=234.53  Aligned_cols=187  Identities=18%  Similarity=0.262  Sum_probs=159.2

Q ss_pred             ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      .....+.+.|.|+++|+|.||+.+++++...|+||++|+|+| .+|++.|+|+|+++ +|.++. +.+...++..|.+++
T Consensus       678 ~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~~~l  755 (867)
T COG2844         678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELIEAL  755 (867)
T ss_pred             ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHHHHH
Confidence            355568899999999999999999999999999999999998 89999999999994 888885 677788888888888


Q ss_pred             cCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcch
Q 018281          201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK  280 (358)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpG  280 (358)
                      .+...      .+ ..       .+|++      +   .         ..+|.++|+|.|.|+.+..+|+|||.+.||||
T Consensus       756 ~s~~~------~~-~~-------~~r~~------r---~---------~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpG  803 (867)
T COG2844         756 LSGKA------QP-PR-------RRRIP------R---K---------LRHFPIPPRVTILPTASNDKTVLEVRALDRPG  803 (867)
T ss_pred             hcCCC------CC-cc-------ccccC------c---c---------cceeccCCceeeccccCCCceEEEEEeCCccc
Confidence            65433      11 00       01211      0   0         12789999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhcc
Q 018281          281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRV  343 (358)
Q Consensus       281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~  343 (358)
                      ||++|+.+|.+++++|++|+|+|.|++|+|+|||++..|.++. ++.++.+.+.|.+++....
T Consensus       804 LLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~~~~  865 (867)
T COG2844         804 LLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALLPND  865 (867)
T ss_pred             HHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999996 5677888888888887654

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=8.3e-26  Score=238.72  Aligned_cols=180  Identities=21%  Similarity=0.237  Sum_probs=149.7

Q ss_pred             ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ... .+.+.|+|+|+||||||++|+++|+.+|+||++|+|+|.+|.+.|+|+|.+ ..|.+.    .++++++.|.++|.
T Consensus       594 ~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~  667 (774)
T PRK03381        594 PAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALD  667 (774)
T ss_pred             eCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHc
Confidence            345 789999999999999999999999999999999999999999999999999 467643    25789999999998


Q ss_pred             CCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchh
Q 018281          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKL  281 (358)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGL  281 (358)
                      +...      ....+       .+|..... + + .           ..++..++.|.++|+.+.++|+|+|.|+|||||
T Consensus       668 ~~~~------~~~~~-------~~~~~~~~-~-~-~-----------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGL  720 (774)
T PRK03381        668 GDLD------VLARL-------AAREAAAA-A-V-P-----------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGL  720 (774)
T ss_pred             CCCc------hhhhh-------hccccccc-c-c-c-----------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhH
Confidence            7533      11111       01100000 0 0 0           116788999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          282 MFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       282 L~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      |++|+.+|+++|+||.+|+|.|.|++|.|+|||++.+|.++.++  ++.|+++|+
T Consensus       721 la~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        721 LARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            99999999999999999999999999999999999999999974  788888875

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.2e-25  Score=237.47  Aligned_cols=183  Identities=20%  Similarity=0.272  Sum_probs=154.1

Q ss_pred             ecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       122 ~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      .....+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|.+ ..|. ..+++++++|++.|.++|
T Consensus       672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l  749 (856)
T PRK03059        672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERL  749 (856)
T ss_pred             ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHH
Confidence            355668999999999999999999999999999999999987 8999999999999 4565 445678999999999999


Q ss_pred             cCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcch
Q 018281          201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK  280 (358)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpG  280 (358)
                      .++..      +...+       .+|..      +.            ..++..+++|.|+++.+.++|+|+|.|+||||
T Consensus       750 ~~~~~------~~~~~-------~~~~~------~~------------~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG  798 (856)
T PRK03059        750 AEQAP------LPEPS-------KGRLS------RQ------------VKHFPITPRVDLRPDERGQYYILSVSANDRPG  798 (856)
T ss_pred             cCCCC------cchhh-------ccccc------cc------------ccCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence            87653      11111       11110      10            11678899999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       281 LL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      ||++|+.+|+.+|++|..|+|.|.|++|.|+|||.   +.++.+++++++|+++|.++|+
T Consensus       799 LLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        799 LLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999994   4446677888999999998875

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=5.8e-25  Score=232.30  Aligned_cols=173  Identities=21%  Similarity=0.231  Sum_probs=143.0

Q ss_pred             CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHH
Q 018281           21 NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEK  100 (358)
Q Consensus        21 ~~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~  100 (358)
                      ..|.|.+++.+ .+.++|+|+|+||||||++||++|+.+||||++|+|+|.+|+++|+|+|.++.|.+...+...+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            56889998888 89999999999999999999999999999999999999999999999999988876544556777888


Q ss_pred             HHCCCCCCCC---Ccc-c-------C--Ccee--eeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC
Q 018281          101 ALGPKGHITA---GAK-T-------W--PSKQ--VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (358)
Q Consensus       101 ~L~~~~~~~~---~~r-~-------~--~~~~--v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~  165 (358)
                      +|.+.+....   .++ .       .  .+..  +.++.+.++|+|+|.++||||||++|+++|+.+|+||.+|+|.|.|
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            8876432110   010 0       0  1112  3346667899999999999999999999999999999999999999


Q ss_pred             CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281          166 RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (358)
Q Consensus       166 ~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~  197 (358)
                      +++.|+|||++ .+|.++.++  .+.|+++|.
T Consensus       745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence            99999999999 689888653  567777653

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.90  E-value=2.6e-23  Score=155.58  Aligned_cols=75  Identities=75%  Similarity=1.236  Sum_probs=72.3

Q ss_pred             eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhc
Q 018281          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR  342 (358)
Q Consensus       268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~  342 (358)
                      ||+|+|.|+|||||||+|+++|.++|++|++|+|+|+|++|.|+|||++.+|.|+.+++++++|+++|.++|.++
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999998753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.86  E-value=1.1e-21  Score=145.73  Aligned_cols=69  Identities=23%  Similarity=0.305  Sum_probs=66.5

Q ss_pred             eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      +|+|+|.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||++.+|.|+.+++.+++|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999999999999989999998876

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=1.3e-20  Score=141.04  Aligned_cols=71  Identities=17%  Similarity=0.319  Sum_probs=68.0

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE--ecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS--SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~--T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      |+|+|.|+|||||||+|+++|+++|++|++|+|+  |.|++++|+||| +.+|.|+.++++++.|+++|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999  999999999999 8899999999999999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=1.1e-17  Score=125.16  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=70.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      +|+|+|.|+||||||++|+++|.++|++|..|+|.|.|+++.|+|||++ .+|.|+.++++.+.|+++|.+++..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 7999999999999999999988854

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=8.5e-17  Score=119.59  Aligned_cols=69  Identities=22%  Similarity=0.325  Sum_probs=64.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~  197 (358)
                      +|+|+|.++||||||++|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.|+.++++.+.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999999 69999988888888888775

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=5.1e-16  Score=116.28  Aligned_cols=72  Identities=14%  Similarity=0.196  Sum_probs=67.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE--ecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~--T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      |+++|.++|||||||+|+++|.++|++|..|+|.  |.|+++.|+||| + .+|.++.++++.+.|+++|.+++..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999  999999999999 6 5788898889999999999988754

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.64  E-value=4.6e-15  Score=131.26  Aligned_cols=161  Identities=12%  Similarity=0.154  Sum_probs=115.3

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCC
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD  204 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~  204 (358)
                      ...+++|++.|+||||+++.|+++|+++||||.+.+....+|.+.-++.++.+        +..++.|+..|...- ...
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l~-~~~   75 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLKG-AEL   75 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhhh-hhc
Confidence            45788999999999999999999999999999999999999999999988662        235677888777532 222


Q ss_pred             CCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHH
Q 018281          205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFD  284 (358)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~  284 (358)
                      .      +...+        +|...     .. ..                       ... ....++|.+.||||++++
T Consensus        76 ~------L~i~v--------~~~~~-----~~-~~-----------------------~~~-~~~~v~v~G~DrPGIV~~  111 (190)
T PRK11589         76 D------LLIVM--------KRTTA-----RP-RP-----------------------AMP-ATVWVQVEVADSPHLIER  111 (190)
T ss_pred             C------eEEEE--------Eeccc-----cc-cc-----------------------cCC-ceEEEEEEECCCCCHHHH
Confidence            2      12211        12100     00 00                       010 124699999999999999


Q ss_pred             HHHHhhcCCeEEEEEEEEecCC--ceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          285 IVCTLTDMQYVVFHAAISSDGP--HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       285 I~~~l~~~~v~I~~a~i~T~g~--~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      ||++|+++|+||...+-.|++.  ...+.|.+.-.-.-|-.  ...+.|+.+|....+
T Consensus       112 vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l~~  167 (190)
T PRK11589        112 FTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKALCT  167 (190)
T ss_pred             HHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHHHH
Confidence            9999999999999999999985  67777777643333321  235667766665444

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.64  E-value=1.8e-15  Score=114.02  Aligned_cols=72  Identities=18%  Similarity=0.313  Sum_probs=68.1

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCC-CCcCCCHHHHHHHHHHHHHHHh
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMD-GCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~-g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      |+|+|.++|||||+++|+.+|+++|+||..|+|.|.|+++.|+|||++.+ |.++.++++++++++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999988 8888888888999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.63  E-value=5.8e-15  Score=130.65  Aligned_cols=153  Identities=16%  Similarity=0.214  Sum_probs=110.6

Q ss_pred             CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCC---C
Q 018281           32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH---I  108 (358)
Q Consensus        32 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~---~  108 (358)
                      ...+++|+++|+|||||.++|+++|+++||||.+.++...+|.+.-++.|.   +.+    .....|+..|.....   .
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence            457899999999999999999999999999999999999999988777773   333    356777877764331   1


Q ss_pred             CCC-cccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCC--e----eEEEEEEEeCCCCC
Q 018281          109 TAG-AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--R----IACVLYVNDDTTCR  181 (358)
Q Consensus       109 ~~~-~r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~--~----~~d~F~v~~~~~g~  181 (358)
                      ... ++.....   -......+.++|.+.||||++++++++|+++|+||.+.+..|.+.  .    +...|.+.-| .+ 
T Consensus        78 ~i~v~~~~~~~---~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~-  152 (190)
T PRK11589         78 LIVMKRTTARP---RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-AS-  152 (190)
T ss_pred             EEEEEeccccc---cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CC-
Confidence            111 1111110   011122589999999999999999999999999999999888653  2    3444444443 22 


Q ss_pred             CCCChHHHHHHHHHHHHHHc
Q 018281          182 AVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       182 ~~~~~~~~~~L~~~L~~~L~  201 (358)
                           .....|+.+|.+.++
T Consensus       153 -----~~~~~L~~~l~~l~~  167 (190)
T PRK11589        153 -----QDAANIEQAFKALCT  167 (190)
T ss_pred             -----CCHHHHHHHHHHHHH
Confidence                 225678888887554

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=6.7e-15  Score=110.89  Aligned_cols=72  Identities=57%  Similarity=0.927  Sum_probs=66.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCC-CCCCCChHHHHHHHHHHHHHHc
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTT-CRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~-g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      |+|+|+++||||||++|+++|+.+|+||++|+++|.++++.|+|+|++ .+ +.++.++++++++++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999 46 7777778889999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=5.9e-15  Score=111.76  Aligned_cols=71  Identities=18%  Similarity=0.361  Sum_probs=65.0

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe-cCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-DGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T-~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  341 (358)
                      +++|.|+||||||++|+.+|+++|++|.+|+|.| .|+++.|+|||++.+|. ..+++++++++++|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence            5899999999999999999999999999999996 89999999999998777 55677889999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.61  E-value=4.4e-15  Score=111.57  Aligned_cols=69  Identities=29%  Similarity=0.483  Sum_probs=63.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  104 (358)
                      ++|.|+++||||||+++|++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999985 899999999999988887777788888888764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.60  E-value=6.2e-15  Score=110.77  Aligned_cols=71  Identities=21%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      +.|+|.++||||||++|+.+|+.+|++|.+|+|.|. ++++.|+|||++.+|.++.+++++++|++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            579999999999999999999999999999999988 58999999999999999887788899999987654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.54  E-value=7.3e-14  Score=105.75  Aligned_cols=71  Identities=23%  Similarity=0.394  Sum_probs=63.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      +++|+++||||||++++++|+.+|+||.+|+|+| .+|++.|+|+|++ ..+. ..++++++++++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 9999999999999 4555 44668889999999988854

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.52  E-value=8.3e-14  Score=102.25  Aligned_cols=52  Identities=29%  Similarity=0.401  Sum_probs=49.6

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK   87 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~   87 (358)
                      .+|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~   54 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG   54 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence            58999999999999999999999999999999997 79999999999998876

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.46  E-value=4.2e-13  Score=113.97  Aligned_cols=157  Identities=13%  Similarity=0.181  Sum_probs=119.7

Q ss_pred             CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCC---C
Q 018281           32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH---I  108 (358)
Q Consensus        32 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~---~  108 (358)
                      ..++++|++++.||||+...+|+...++||||+++|+.+.|+.+.-++.+.   |.|    +...+|+..|...-.   .
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCe
Confidence            456799999999999999999999999999999999999999888665553   444    567889998875332   1


Q ss_pred             CC-CcccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCC
Q 018281          109 TA-GAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGD  185 (358)
Q Consensus       109 ~~-~~r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~  185 (358)
                      .. +.|..+...   ..+...+.+.|.+.||||++.++|++|..+|+||.+....|  ..+.-...|.+.- .-+-|.. 
T Consensus        75 ~v~m~rt~~~~~---~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~-  149 (176)
T COG2716          75 LVVMKRTGAHPT---PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN-  149 (176)
T ss_pred             EEEEeecCCCcc---CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc-
Confidence            11 123333321   35567789999999999999999999999999999988887  4555666777766 3444542 


Q ss_pred             hHHHHHHHHHHHHHHc
Q 018281          186 QTRLSLMEEQLKNILR  201 (358)
Q Consensus       186 ~~~~~~L~~~L~~~L~  201 (358)
                       -.+..|+++|++.++
T Consensus       150 -~~i~~l~~~f~al~~  164 (176)
T COG2716         150 -LSISALRDAFEALCD  164 (176)
T ss_pred             -CcHHHHHHHHHHHHH
Confidence             456779999887543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.37  E-value=5e-12  Score=94.66  Aligned_cols=68  Identities=31%  Similarity=0.578  Sum_probs=62.0

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  104 (358)
                      +.|+|+++|+||+|++|+++|+.+|+||++|.++|.+++++|+|+|+++++.+. +++.+++|++.|..
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~   69 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP   69 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999998889999999999988876 55688889988864

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.37  E-value=9.5e-12  Score=129.49  Aligned_cols=144  Identities=13%  Similarity=0.098  Sum_probs=115.4

Q ss_pred             EEEEEEe-CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCCCc
Q 018281          129 TAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDED  207 (358)
Q Consensus       129 t~v~V~~-~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~~~  207 (358)
                      ..++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.+...|.|.. ..|.+. ++   ..+++.+..++.+..+  
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~--  618 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELP--  618 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCC--
Confidence            5677777 9999999999999999999999999999 888999999999 577765 33   5688888877776554  


Q ss_pred             chhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHHHHH
Q 018281          208 SEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVC  287 (358)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~I~~  287 (358)
                        .  .            .                          .-+|.+.+.+      +++||++.||||+|+.|+.
T Consensus       619 --~--~------------~--------------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~  650 (693)
T PRK00227        619 --D--P------------A--------------------------PGITATFWHG------NILEVRTEDRRGALGALLG  650 (693)
T ss_pred             --c--c------------c--------------------------CCCCceEeeC------cEEEEEeCccccHHHHHHH
Confidence              0  0            0                          1124455554      6899999999999999999


Q ss_pred             HhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          288 TLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       288 ~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      +|.    +|.+|+++|.|..+.|.||+..        .....++.+++..+|.
T Consensus       651 ~l~----~~~~~~~~~~g~~~~~~~~~~~--------~~~r~~~~~~~~~~~~  691 (693)
T PRK00227        651 VLP----DLLWITASTPGATMIVQAALKP--------GFDRATVERDVTRVLA  691 (693)
T ss_pred             Hhh----hhhhHhhcCCCcceEEEEEecC--------cccHHHHHHHHHHHHh
Confidence            999    8999999999999999999972        1234566666666653

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.37  E-value=6e-12  Score=107.00  Aligned_cols=160  Identities=14%  Similarity=0.137  Sum_probs=117.6

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCC
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD  204 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~  204 (358)
                      ..++++|++++.||||+...|++...++||||.++++...|+.+..+..|+.+     |   +...+|+..|.. +..+.
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-----~---dav~~le~~l~~-l~~~~   72 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-----W---DAVTLLEATLPL-LGAEL   72 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-----H---HHHHHHHHHhhc-ccccC
Confidence            34678999999999999999999999999999999999999999999999883     3   456778887763 44434


Q ss_pred             CCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHH
Q 018281          205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFD  284 (358)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~  284 (358)
                      +      +...+        +|.         .+              ..    .   ........++|.+.||||++.+
T Consensus        73 ~------L~v~m--------~rt---------~~--------------~~----~---~a~~~~v~v~v~a~DrpgIv~~  108 (176)
T COG2716          73 D------LLVVM--------KRT---------GA--------------HP----T---PANPAPVWVYVDANDRPGIVEE  108 (176)
T ss_pred             C------eEEEE--------eec---------CC--------------Cc----c---CCCCceEEEEEEecCCccHHHH
Confidence            3      12111        111         00              00    0   0111234689999999999999


Q ss_pred             HHHHhhcCCeEEEEEEEEecCCc--eEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          285 IVCTLTDMQYVVFHAAISSDGPH--ASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       285 I~~~l~~~~v~I~~a~i~T~g~~--a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      +|+.|..+|++|++....|+...  ....|.+.-.-+-|..-  ....|++++.+..
T Consensus       109 ~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al~  163 (176)
T COG2716         109 FTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEALC  163 (176)
T ss_pred             HHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHHH
Confidence            99999999999999999987643  55678887555666553  4567777766544

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.32  E-value=1.3e-11  Score=92.49  Aligned_cols=67  Identities=21%  Similarity=0.317  Sum_probs=60.4

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      |.|.|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.|+|+|.+.+|.++ ++++.++++++|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999889999999999999988 5677777777664

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.32  E-value=1.5e-11  Score=90.30  Aligned_cols=65  Identities=22%  Similarity=0.361  Sum_probs=56.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      +.|.|+++||||||++++++|+.+|+||.+|+|+| .+|++.|+|+|.+ .+|.      .-..|+++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCcc------chHHHHHHHHHhh
Confidence            57899999999999999999999999999999998 8999999999999 4553      2245777777655

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.30  E-value=4.6e-11  Score=124.41  Aligned_cols=144  Identities=13%  Similarity=0.090  Sum_probs=117.5

Q ss_pred             EEEEEEe-cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 018281           36 TVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (358)
Q Consensus        36 ~~v~v~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~  114 (358)
                      ..++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+.++....+.++..+.+.+...   ..
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  622 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP---AP  622 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc---cC
Confidence            4677776 9999999999999999999999999999 88888999999888888777777888888887766532   22


Q ss_pred             CCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHH
Q 018281          115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEE  194 (358)
Q Consensus       115 ~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~  194 (358)
                      .++..+.+.     ++++|.+.||||+|+.++++|.    +|..|++.|.|..++|.|++...   .      ....++.
T Consensus       623 ~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~---~------~r~~~~~  684 (693)
T PRK00227        623 GITATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG---F------DRATVER  684 (693)
T ss_pred             CCCceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc---c------cHHHHHH
Confidence            333333222     7999999999999999999999    89999999999999999999862   1      1245777


Q ss_pred             HHHHHHc
Q 018281          195 QLKNILR  201 (358)
Q Consensus       195 ~L~~~L~  201 (358)
                      .+..+|.
T Consensus       685 ~~~~~~~  691 (693)
T PRK00227        685 DVTRVLA  691 (693)
T ss_pred             HHHHHHh
Confidence            7766664

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.30  E-value=2.3e-11  Score=90.07  Aligned_cols=70  Identities=23%  Similarity=0.375  Sum_probs=63.5

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      |.|.|.++||||+|++|+++|.++|++|.++++.|.++.+.|.|++++.+|.+ .+++..++++++|..+|
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence            57999999999999999999999999999999999888999999999999999 45578888999887653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.22  E-value=1.2e-10  Score=86.12  Aligned_cols=69  Identities=35%  Similarity=0.555  Sum_probs=62.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      |.+.|.++|+||+|++|+++|+.+|++|.++++.+.++.+.++|++++ .++.+. +.+++++|++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999998789999999999 577774 567888899988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.00  E-value=4.1e-09  Score=77.56  Aligned_cols=69  Identities=32%  Similarity=0.421  Sum_probs=60.8

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHH
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA  338 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~  338 (358)
                      +.|.|.++|+||+|++|+++|+++|++|.++.+.+.++...+.|++...+|.+ .++++.++++++|...
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence            36889999999999999999999999999999999878999999999888777 4456788888888754

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.90  E-value=1.8e-08  Score=74.05  Aligned_cols=69  Identities=39%  Similarity=0.645  Sum_probs=59.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      +.+.|.++|+||+|++|+++|+++|++|.++.+.+.+++..+.|++.. .++.+. +.+++++|++.|...
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999997669999999998 465553 457888888888654

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.77  E-value=7.4e-08  Score=72.77  Aligned_cols=65  Identities=23%  Similarity=0.434  Sum_probs=55.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      +.+|++.|+||||+++.++++|+++|+||.+.+..+.++++...+.+..+        +...++|+++|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999883        346688888888644

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.73  E-value=1.3e-07  Score=71.47  Aligned_cols=62  Identities=26%  Similarity=0.337  Sum_probs=50.3

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (358)
Q Consensus        35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~  103 (358)
                      +.+|+++|+||||+++.++++|+++||||.+.++.+.+|.+.-.+.|.-+       +...++|++.|.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~   63 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALE   63 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHH
Confidence            57899999999999999999999999999999999999999888888644       235566776665

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.54  E-value=3.1e-07  Score=69.06  Aligned_cols=64  Identities=22%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      +++|.|+||||++++++++|+++|+||.+.+..+.++++...|.+..| .+      ...+.|++.|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHHH
Confidence            378999999999999999999999999999988888888888888774 22      12467888887654

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.53  E-value=5.1e-07  Score=68.33  Aligned_cols=47  Identities=23%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~   82 (358)
                      ++|++.|+||||+.++|++.|+++||||.+.+.++.+|++.-.+.+.
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~   48 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE   48 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence            68999999999999999999999999999999999888886555554

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.51  E-value=3.9e-06  Score=67.16  Aligned_cols=113  Identities=23%  Similarity=0.278  Sum_probs=84.1

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCC
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWP  116 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~  116 (358)
                      +|.|+..|+||-|..++.+|...|+||..-.|.-.+..-+-.++|..+           +.-.++|.+.-.         
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~gF---------   64 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAGF---------   64 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCCc---------
Confidence            689999999999999999999999999988886555544545555322           122445554321         


Q ss_pred             ceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          117 SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       117 ~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      .+       ...-++-|..+|+||-|++|+.+|.++++|+..+..++ ....+.-+|.+.+
T Consensus        65 ~V-------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          65 TV-------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             EE-------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            11       12237888999999999999999999999999999987 5566666665544

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.51  E-value=8e-07  Score=67.26  Aligned_cols=62  Identities=21%  Similarity=0.382  Sum_probs=51.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      +++++.|+||||++++|+++|+++|+||.+.+.++.++++.-.+.+..+     .   ...+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-----~---~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-----W---DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-----c---ccHHHHHHHHHH
Confidence            6899999999999999999999999999999999988888666666652     1   124678877776

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.50  E-value=1.5e-06  Score=62.90  Aligned_cols=63  Identities=24%  Similarity=0.250  Sum_probs=46.9

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~  337 (358)
                      |.|.|.++||||+|++|+++|+++|+||.++...+.++.....|.+...      +....+++.++|.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV------DEEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE------EGHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC------CCCCHHHHHHHHHc
Confidence            4689999999999999999999999999999999888753333333321      12445566666554

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.45  E-value=6.3e-07  Score=63.36  Aligned_cols=66  Identities=23%  Similarity=0.411  Sum_probs=54.8

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  104 (358)
                      ++|+|.|||+.||-.++|+++.+.|++|..+++.|+|.+++-+|+|.......   .-.+..|+..|.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~---~~rW~lLK~RL~~   66 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI---KVRWDLLKNRLMS   66 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC---cccHHHHHHHHHh
Confidence            47999999999999999999999999999999999999999999998653221   1245666666653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.41  E-value=2.8e-06  Score=61.43  Aligned_cols=61  Identities=25%  Similarity=0.449  Sum_probs=46.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCC--eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~--~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      |.|.|.++||||+|++++++|+++|+||..+.+.+.++  ....++...+         ....+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999999555  3333333333         2344566666665

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.38  E-value=1.4e-06  Score=65.46  Aligned_cols=50  Identities=16%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCC
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQG   86 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g   86 (358)
                      +|+|.|+||||+.++++++|+.+||||.+.+..+.++.+.-.|.+.-+.+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~   50 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS   50 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence            37899999999999999999999999999998888888887788865543

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.25  E-value=3.1e-06  Score=65.63  Aligned_cols=66  Identities=20%  Similarity=0.363  Sum_probs=53.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      .++++.|+|+||++++|+++|+++|+||.+.+..+.++.+.-.+.+..| . ..    ...+.|++.|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-~~----~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-SN----LDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-CC----CCHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999988887777777763 1 01    12467888888644

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.14  E-value=8.8e-06  Score=63.28  Aligned_cols=66  Identities=21%  Similarity=0.393  Sum_probs=52.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      .+++++.|+||||++++++++|+++|+||.+....+.++.+.-.+.+..+  +.+.    ..+.|++.|.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~l   68 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEEL   68 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHHH
Confidence            67999999999999999999999999999999998887776666666552  1122    236677777763

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.12  E-value=7.5e-06  Score=63.46  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=43.2

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ   84 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~   84 (358)
                      ..|++.|+|+||++++|+++|+.+||||.+.+..+.++.+.-.+.+.-+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence            5789999999999999999999999999999999988877766666544

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.12  E-value=1.6e-05  Score=59.48  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=45.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      +|++.|+||||++++|+++|+++|+||.+.+..+.  ++.+.-.+.+..| .+ +    ...+.|++.|....
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~-~~-~----~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE-GF-D----LSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC-CC-C----CCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999973  2332222233221 00 0    12567888877643

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.11  E-value=1.5e-05  Score=60.39  Aligned_cols=64  Identities=23%  Similarity=0.385  Sum_probs=48.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC------CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN------RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~------~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      +|++.|+|+||++++|+++|+++|+||.+.+..+.+      +.+.-.+.+..| .+      .....|++.|....
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHHHH
Confidence            378999999999999999999999999999999865      444444555442 11      12467888887643

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.10  E-value=2.1e-05  Score=58.84  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (358)
                      +|++.|+||||++++|++.|+++||||.+.+.++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            4789999999999999999999999999999997

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.08  E-value=1.3e-05  Score=62.37  Aligned_cols=48  Identities=25%  Similarity=0.335  Sum_probs=42.6

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (358)
Q Consensus        35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~   82 (358)
                      .+.|+|.|+|+||+++++++.|+.+|+||.+.+..+.++.+.-.+.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            578999999999999999999999999999999988888777655554

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.04  E-value=2.8e-05  Score=58.94  Aligned_cols=48  Identities=25%  Similarity=0.288  Sum_probs=40.4

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeC------CEEEEEEEEEeC
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG------GWFMDVFHVIDQ   84 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~------g~~~d~f~V~~~   84 (358)
                      +|+|.|+|+||++++|++.|+.+|+||.+.+..+.+      +.+.-.+.+.-+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p   54 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP   54 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence            478999999999999999999999999999999855      555555666544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.00  E-value=2e-05  Score=55.85  Aligned_cols=67  Identities=18%  Similarity=0.341  Sum_probs=58.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ++|+|.|+|+.||=.++++++.+.|++|..+.+.|.|....-+|+|.. .. .++  +-+|..|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~-~~-~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP-RP-PSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec-CC-CCC--cccHHHHHHHHHhc
Confidence            479999999999999999999999999999999999999999999987 32 223  36789999998764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.99  E-value=0.00012  Score=69.28  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=37.2

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE--eeCCEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS--SDGGWFM   76 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~--t~~g~~~   76 (358)
                      ...+|+|.|+|||||.++|+++|+++|+||.+.+.+  +..+.++
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff   52 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF   52 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE
Confidence            456899999999999999999999999999999998  4444444

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.97  E-value=0.00023  Score=67.07  Aligned_cols=46  Identities=11%  Similarity=0.202  Sum_probs=40.3

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~   82 (358)
                      .|+|.|+|+||+.++|++.|+++|+||.+.+.+.  .+|++.-.+.+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~   49 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQ   49 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEE
Confidence            5899999999999999999999999999999998  457777555554

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.95  E-value=7.6e-05  Score=56.56  Aligned_cols=62  Identities=13%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec--CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~--g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      +.|.|.+.||||+|++|++++.+.|++|..+.+.+.  ++.+.-.|.+.-      .+.++++.|.+.|+
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~   70 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHC
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHH
Confidence            469999999999999999999999999999999985  456777777753      33456666665544

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.93  E-value=0.0012  Score=53.06  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=76.1

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCCCcch
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSE  209 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~~~~~  209 (358)
                      +|.|...++||=|+..+..|.++|+||.-..|.-.++...-.+.|..|         +.   -.+.|++    ...    
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~---------d~---A~~~Lee----~gF----   64 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP---------DE---AHSVLEE----AGF----   64 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh---------HH---HHHHHHH----CCc----
Confidence            688999999999999999999999999977776555433333333331         11   1122221    100    


Q ss_pred             hhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHHHHHHh
Q 018281          210 KVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTL  289 (358)
Q Consensus       210 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~I~~~l  289 (358)
                                                                     .|.+       -.++-|...|+||=|..|+.+|
T Consensus        65 -----------------------------------------------~Vr~-------~dVlaVEmeD~PG~l~~I~~vl   90 (142)
T COG4747          65 -----------------------------------------------TVRE-------TDVLAVEMEDVPGGLSRIAEVL   90 (142)
T ss_pred             -----------------------------------------------EEEe-------eeEEEEEecCCCCcHHHHHHHH
Confidence                                                           0111       1268889999999999999999


Q ss_pred             hcCCeEEEEEEEEe-cCCceEEEEEE
Q 018281          290 TDMQYVVFHAAISS-DGPHASQEYYI  314 (358)
Q Consensus       290 ~~~~v~I~~a~i~T-~g~~a~d~F~v  314 (358)
                      .+.++|+.++-..+ ..++|.=.|.+
T Consensus        91 ~d~diNldYiYAFv~ek~KAlli~r~  116 (142)
T COG4747          91 GDADINLDYIYAFVTEKQKALLIVRV  116 (142)
T ss_pred             hhcCcCceeeeeeeecCceEEEEEEh
Confidence            99999999998754 44455544443

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.75  E-value=0.00023  Score=53.93  Aligned_cols=63  Identities=24%  Similarity=0.405  Sum_probs=48.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~  197 (358)
                      .+.+.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+.-.|.+.-.       +.++++.+-..|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999983  6777877877762       3455555555544

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.73  E-value=5.1e-05  Score=58.22  Aligned_cols=68  Identities=19%  Similarity=0.307  Sum_probs=53.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ..+|+|.|+||||+.+.++++|+++|+||.+-.-+-..+.+.-.+.+.-+  ..    ......++..|.....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence            56899999999999999999999999999988777788888777777652  11    1234567777766543

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.73  E-value=0.00016  Score=68.45  Aligned_cols=69  Identities=16%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      ...++|+|.|+||||+++.|+++|+++|+||.+.+..+  .++.+...+.+..  +..+    ..++.|++.|.+..
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~l~   74 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAALA   74 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999  7776555555443  1122    23577888888644

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.63  E-value=0.00047  Score=51.12  Aligned_cols=60  Identities=7%  Similarity=0.164  Sum_probs=46.2

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      |.|.+.||||+|.+|++++++.|++|......+.. ..+.-.|-+.-      .+..+++++.++|.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev------~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA------PSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc------CCHHHHHHHHHHHh
Confidence            78999999999999999999999999998887653 45555565542      33456677766655

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.62  E-value=0.0017  Score=61.57  Aligned_cols=49  Identities=20%  Similarity=0.224  Sum_probs=42.5

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~   82 (358)
                      ..+.|+|.|+||||+.+.|+++|+.+||||.+.+.++  .+|.+.-.+.+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~   55 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE   55 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence            4678999999999999999999999999999999998  777655545543

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.60  E-value=0.00022  Score=65.42  Aligned_cols=43  Identities=19%  Similarity=0.361  Sum_probs=39.2

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFM   76 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~   76 (358)
                      ...++++.|+|+|||.++|++.|..+||||.++..++  .+|+++
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF   50 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF   50 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE
Confidence            5679999999999999999999999999999999998  367765

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.58  E-value=0.00081  Score=49.83  Aligned_cols=60  Identities=12%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~  197 (358)
                      +.|.+.||||+|++|+.++++.|+||......+ ..+.+...|.+.-.       +.++++.+...|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHh
Confidence            678999999999999999999999999888876 35666666766552       3355666666655

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.56  E-value=0.0024  Score=60.44  Aligned_cols=51  Identities=18%  Similarity=0.198  Sum_probs=41.9

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEEeC
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQ   84 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~~~   84 (358)
                      ....|+|.|+||||+.+++|++|+++|+||.+.+.++  .++.+.-.+.+..+
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p   58 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE   58 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC
Confidence            3578999999999999999999999999999999986  45666545555434

>PRK07431 aspartate kinase; Provisional

Probab=97.50  E-value=0.11  Score=54.29  Aligned_cols=220  Identities=13%  Similarity=0.140  Sum_probs=127.9

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281           33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (358)
Q Consensus        33 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (358)
                      .+...|.|++.   +.||+.+++..+|...|+||....  + .+..+ +|.|...+.     ++..+.|++.+.-.....
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence            36778899874   899999999999999999996544  3 33222 355542211     246677777774332211


Q ss_pred             ---CC-cccCCceeeeecCCCCeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC--CeeEEEEEEEeCCCCC
Q 018281          110 ---AG-AKTWPSKQVGVHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HN--RRIACVLYVNDDTTCR  181 (358)
Q Consensus       110 ---~~-~r~~~~~~v~~~~~~~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~--~~~~d~F~v~~~~~g~  181 (358)
                         +. .+......-......+...|++. .++.+|+++++...|.++|++|..-.... .+  |...-.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence               11 11111111112334455566665 56889999999999999999998664432 22  22233344333     


Q ss_pred             CCCChHHHHHHHHHHHHHHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEe
Q 018281          182 AVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVE  261 (358)
Q Consensus       182 ~~~~~~~~~~L~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~  261 (358)
                           ..+......+.+ +.....       .                                          ..+.+.
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~-------~------------------------------------------~~i~~~  516 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP-------G------------------------------------------AEVEDG  516 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC-------C------------------------------------------ceEEEe
Confidence                 122222222222 221111       0                                          112222


Q ss_pred             cCCCCceeEEEEEeC---CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEE-EEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281          262 RLEDKGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQE-YYIRHMDGCILDTEGEKERVIKCLEA  337 (358)
Q Consensus       262 n~~~~~~t~l~v~~~---DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~-F~v~~~~g~~l~~~~~~~~l~~~L~~  337 (358)
                      +    +.+.|.|.+.   .+||++.++.++|.+.|++|....  |   ..... |.|.         .+..++.-++|..
T Consensus       517 ~----~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV~---------~~~~~~av~~Lh~  578 (587)
T PRK07431        517 P----AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T---SEIRTSCVVA---------EDDGVKALQAVHQ  578 (587)
T ss_pred             C----CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEEe---------HHHHHHHHHHHHH
Confidence            2    4567888874   889999999999999999997666  2   33333 4443         2455666677776


Q ss_pred             HH
Q 018281          338 AI  339 (358)
Q Consensus       338 ~l  339 (358)
                      .+
T Consensus       579 ~f  580 (587)
T PRK07431        579 AF  580 (587)
T ss_pred             Hh
Confidence            66

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.50  E-value=0.0006  Score=64.54  Aligned_cols=68  Identities=10%  Similarity=0.163  Sum_probs=51.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ..++|+|.|+||||+++.++++|+++|+||.+....+  .++.+...+.+..| .+  .    ....|+++|.+...
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~--~----~~~~L~~~L~~l~~   75 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG--L----DEDALRAGFAPIAA   75 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC--C----CHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999986  44455555555442 12  1    24678888876443

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.49  E-value=0.00047  Score=65.29  Aligned_cols=69  Identities=12%  Similarity=0.240  Sum_probs=49.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE--ecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~--T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      ..++|+|.|+||||+++.|+++|+++|+||.+...+  +..+.+..++.+.. .....+    ..+.|++.|.+..
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~l~   78 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQPVA   78 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHHHH
Confidence            456899999999999999999999999999999997  44454444433443 111122    2456777777643

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.46  E-value=0.00067  Score=50.62  Aligned_cols=57  Identities=11%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      |+|.+.||+|+|++|+.++++.|++|.+..+.+. +.    .+++-    .+.+.++++.|.++|+
T Consensus         3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i----~v~~~~~L~~li~~L~   59 (74)
T cd04877           3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNF----PTIEFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEe----EecCHHHHHHHHHHHh
Confidence            7899999999999999999999999999999875 22    22221    1223456666665554

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.41  E-value=0.00011  Score=56.50  Aligned_cols=48  Identities=23%  Similarity=0.294  Sum_probs=41.3

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (358)
Q Consensus        35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~   82 (358)
                      ..+|+|.+.||||+.+.++++|+++|.||++-..+--+|++.-.+.|.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~   50 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence            468999999999999999999999999999877777778776555553

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.35  E-value=0.001  Score=62.74  Aligned_cols=66  Identities=18%  Similarity=0.174  Sum_probs=50.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      +|+|.|+||||+++.|+++|+++|+||.+...++.  ++++.-.+.+..+  +.++    ..+.|++.|.+++.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~   69 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALA   69 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999984  4776666666552  2112    24567777776343

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK07431 aspartate kinase; Provisional

Probab=97.30  E-value=0.1  Score=54.48  Aligned_cols=192  Identities=15%  Similarity=0.167  Sum_probs=111.8

Q ss_pred             ecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceee
Q 018281           42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV  120 (358)
Q Consensus        42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~~~~~~v  120 (358)
                      ..+.+|++++|...|..+|+||.--.... .++..--.|.+...+-     +...+.|+ .|...+..         .. 
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~-~l~~~~~~---------~~-  341 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAE-AIAPALGG---------AE-  341 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHH-HHHHHcCC---------Cc-
Confidence            47889999999999999999999765543 2333333577743211     11112222 12211111         01 


Q ss_pred             eecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281          121 GVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (358)
Q Consensus       121 ~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~  197 (358)
                       .....+...|.+.|.   ++||+++++..+|.+.|++|....  +  ....-.|.|..          ...++..+.|+
T Consensus       342 -i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh  406 (587)
T PRK07431        342 -VLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVC  406 (587)
T ss_pred             -EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHH
Confidence             122346678888876   799999999999999999996544  2  22233344433          23445556677


Q ss_pred             HHHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEE-eC
Q 018281          198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVK-CR  276 (358)
Q Consensus       198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~-~~  276 (358)
                      +.+.....       ...+.      +-+.       + .+             -..-+-|..+.    +...|++. .+
T Consensus       407 ~~f~~~~~-------~~~~~------~~~~-------~-~~-------------~~~v~gIa~~~----~~~~i~l~~~~  448 (587)
T PRK07431        407 EAFELEDS-------QIEIN------PTAS-------G-QD-------------EPEVRGVALDR----NQAQLAIRNVP  448 (587)
T ss_pred             HHhccCCc-------ccccC------cccc-------C-CC-------------CCcEEEEEccC----CEEEEEECCCC
Confidence            66643322       11110      0010       0 00             01112233222    34455554 57


Q ss_pred             CcchhHHHHHHHhhcCCeEEEEEEEE
Q 018281          277 DRAKLMFDIVCTLTDMQYVVFHAAIS  302 (358)
Q Consensus       277 DrpGLL~~I~~~l~~~~v~I~~a~i~  302 (358)
                      ++||++++|...|.++|++|....-.
T Consensus       449 ~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        449 DRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             CCccHHHHHHHHHHHcCCeEEEEEec
Confidence            88999999999999999999998653

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.26  E-value=0.0032  Score=45.74  Aligned_cols=61  Identities=18%  Similarity=0.229  Sum_probs=42.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-----CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-----~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      +.|.++|+||+|++|+.+|+++|+||.+......     .+...-.|.+...       +.++++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            3578899999999999999999999998876653     2444444444441       23455566665543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.22  E-value=0.0027  Score=46.07  Aligned_cols=34  Identities=9%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD  304 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~  304 (358)
                      +.|.++|+||+|++|+++|++.|++|.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3578899999999999999999999998876643

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.20  E-value=0.0016  Score=50.94  Aligned_cols=78  Identities=10%  Similarity=0.066  Sum_probs=53.8

Q ss_pred             CCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccC
Q 018281          265 DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVS  344 (358)
Q Consensus       265 ~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~  344 (358)
                      ...+| |.+...|+||+|.+|+..|+.+|+||.+..+.-.+....-.+.+.-. +     +...+++.+.|.+.+     
T Consensus         6 ~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~-----~~~i~Qi~kQL~KLi-----   73 (96)
T PRK08178          6 HDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D-----DQRLEQMISQIEKLE-----   73 (96)
T ss_pred             CCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C-----chHHHHHHHHHhCCc-----
Confidence            33555 99999999999999999999999999999987555544444444322 1     246677766655332     


Q ss_pred             CceEEEEEec
Q 018281          345 EVSKFSFYSM  354 (358)
Q Consensus       345 ~~~~~~~~~~  354 (358)
                      ..+++.-+++
T Consensus        74 dVikV~~l~~   83 (96)
T PRK08178         74 DVLKVRRNQS   83 (96)
T ss_pred             CEEEEEECCC
Confidence            4555555543

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.15  E-value=0.0024  Score=58.67  Aligned_cols=66  Identities=15%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..+++++.|+|+||+++.|++.|+++|+||.++.-++  ..|++...-.+..  .+.+.    ..+.|+..|..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence            5689999999999999999999999999999999997  2455433333333  12322    34567777665

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.14  E-value=0.0035  Score=54.86  Aligned_cols=65  Identities=18%  Similarity=0.346  Sum_probs=48.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ..+.+.+.|+||+|++|+++|+.+|+||.+..+..  ..+...-++.+..        +...++.|+++|.+.++
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence            47899999999999999999999999999999975  4444433333322        12336778888877553

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.11  E-value=0.0037  Score=47.00  Aligned_cols=62  Identities=18%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..+.+...|+||+|++|+++|...|+||.+..+.- .. +...-++.+..        ++..++.|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            47899999999999999999999999999888763 33 33333333332        23455666666554

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.10  E-value=0.0033  Score=46.80  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=32.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~  164 (358)
                      .+.|.+.||+|+|++|+.++++.|+||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.09  E-value=0.0038  Score=45.38  Aligned_cols=44  Identities=7%  Similarity=0.038  Sum_probs=36.9

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEE
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR  315 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~  315 (358)
                      .+.|..+|+||.|++|+.+|.+.|+||.+..+...++.  -.|.+.
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            47889999999999999999999999999998766553  455554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.08  E-value=0.0038  Score=45.54  Aligned_cols=60  Identities=13%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~  337 (358)
                      .+.+..+|+||.|++|++.|+++|++|.+.......  ....-.|.++.        +...+++.+.|.+
T Consensus         3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~--------~~~~~~~~~~L~~   64 (69)
T cd04909           3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT--------QEDRERAKEILKE   64 (69)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC--------HHHHHHHHHHHHH
Confidence            478899999999999999999999999988766542  23444555542        1345566666553

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.06  E-value=0.0037  Score=47.72  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..+.+...|+||.|++|+++|...|+||.+..+..  ..+...-++.+..   |    ++..++.+...|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence            36899999999999999999999999999999875  3333344444431   1    33555666666654

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.03  E-value=0.0044  Score=45.97  Aligned_cols=61  Identities=11%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCcCCCHH-HHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEG-EKERVIKCLE  336 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~l~~~~-~~~~l~~~L~  336 (358)
                      .|.|.+.||||+|++|+++|++.|++|......+.. +.+.=.|-+..      .+.. ++++|.++|.
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v------~~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT------STMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc------CchHHHHHHHHHHHh
Confidence            378999999999999999999999999999875533 34444455532      2222 5566655554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.03  E-value=0.0036  Score=47.07  Aligned_cols=64  Identities=14%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE-ecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS-SDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~-T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      .|.+...|+||+|.+|+..|+.+|+||.+..+. |..+.......+..      .++...++|.+.|.+.+
T Consensus         4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~------~~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV------CTENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE------CCHHHHHHHHHHHhCCc
Confidence            489999999999999999999999999999987 43333333322222      12456677776665433

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.02  E-value=0.0047  Score=48.36  Aligned_cols=38  Identities=29%  Similarity=0.501  Sum_probs=34.2

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT  163 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T  163 (358)
                      .....+.+...|+||+|++|++.|+..|+||.+..+.-
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~   43 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLP   43 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEee
Confidence            45567999999999999999999999999999988764

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.01  E-value=0.0038  Score=54.59  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      .+.|.+.|+||+|++|+..|+++|+||.+..+..........+-+.-. |    ++...++|++.|.+.++
T Consensus         4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~----~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G----DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C----CHHHHHHHHHHHHHHhH
Confidence            599999999999999999999999999999996532332224444322 1    12236677777765554

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.01  E-value=0.0023  Score=44.78  Aligned_cols=46  Identities=28%  Similarity=0.348  Sum_probs=38.5

Q ss_pred             EEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEe
Q 018281           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVID   83 (358)
Q Consensus        38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~   83 (358)
                      |.+..+|+||.+++++.+|.++|+||....+... ++..+-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            4578999999999999999999999999998774 477776676643

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.01  E-value=0.0066  Score=45.00  Aligned_cols=61  Identities=21%  Similarity=0.356  Sum_probs=45.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChH-HHHHHHHHHH
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQT-RLSLMEEQLK  197 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~~~~g~~~~~~~-~~~~L~~~L~  197 (358)
                      .+.+.+.|+||++++|+++|+++|+||......+. ++.+.-.|.+...       +.+ .++.|-++|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence            57899999999999999999999999999877653 4555566666541       123 5566666555

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.00  E-value=0.0026  Score=44.50  Aligned_cols=46  Identities=22%  Similarity=0.345  Sum_probs=38.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC-CeeEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~-~~~~d~F~v~~  176 (358)
                      +.+..+|+||.|++++.+|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35788999999999999999999999999988754 66666666655

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.96  E-value=0.0071  Score=43.70  Aligned_cols=59  Identities=12%  Similarity=0.184  Sum_probs=42.3

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CC-ceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GP-HASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~-~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      |.+.+.|+||+|.+|+.+|+++|++|.+....+. ++ .+.=.|.+. .     .+ .+.+.+.+.|.
T Consensus         3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~l~~~l~   63 (72)
T cd04878           3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE-G-----DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE-C-----CH-HHHHHHHHHHh
Confidence            7889999999999999999999999999998775 33 333333332 1     12 35556655554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.93  E-value=0.0018  Score=47.89  Aligned_cols=70  Identities=17%  Similarity=0.328  Sum_probs=49.2

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE--ecCCceEEEEEEEe-CCCCcCCCHHHHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS--SDGPHASQEYYIRH-MDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~--T~g~~a~d~F~v~~-~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      .+|+.++-||-.+||+|-||+.+|+.|.+|.|.  ..+++...+|-+.- ..++.+..+....++.+.+.+.+
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999995  34666666544432 22334554444555555554443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.93  E-value=0.0087  Score=43.60  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~  164 (358)
                      +.+.+..+|+||.|+++++.|+++|+||.+......
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            468899999999999999999999999998877664

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.90  E-value=0.0045  Score=44.96  Aligned_cols=46  Identities=15%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      ..+.|..+|+||.|++++.+|.++|+||.+..+...++.  .++.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            468889999999999999999999999999988775443  4555543

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.87  E-value=0.0088  Score=45.19  Aligned_cols=50  Identities=6%  Similarity=0.164  Sum_probs=39.6

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-ceEEEEEEEeCCCC
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGC  320 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-~a~d~F~v~~~~g~  320 (358)
                      .+.+..+|+||.|++|...|+++|+||.+......+. ...=.|||.. +|.
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~   53 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH   53 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC
Confidence            4777889999999999999999999999998776544 4455777754 344

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.83  E-value=0.0083  Score=44.19  Aligned_cols=61  Identities=10%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      .|.|.+.|+||+|.+|+++|.++|++|......+..  +.+.=.|.+..      .+..+++++.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHH
Confidence            388999999999999999999999999999876543  33333332221      23455566655554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.78  E-value=0.01  Score=51.06  Aligned_cols=64  Identities=19%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      .+++|...|+||.|++|+++|+.+|+||.+..+...  .+...-++.+..        ++..++.|..+|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence            368899999999999999999999999998887753  344444555533        2355667777776533

acetohydroxyacid synthase is a synonym.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.75  E-value=0.0075  Score=46.05  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=45.2

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-e-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  104 (358)
                      .+.++..|+||.|++|++.|+..|+||.+-.+. | ..|..--++.+.  .|.    +...++|.+.|..
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~d----~~~ieqI~kQL~K   67 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQD----DTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CCC----HHHHHHHHHHHhC
Confidence            589999999999999999999999999998886 4 344443333332  122    3566777777754

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.74  E-value=0.007  Score=43.53  Aligned_cols=44  Identities=7%  Similarity=-0.010  Sum_probs=36.8

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEE
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYI  314 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v  314 (358)
                      +.|.+.|+||+|.+|+++|.++|++|.+..+...+  +.+.-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999987754  445445555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.73  E-value=0.013  Score=50.60  Aligned_cols=64  Identities=14%  Similarity=0.351  Sum_probs=47.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-c-CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-H-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~-~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      ..++|...|+||.|++|+++|+.+|+||.+..+.. . .+...-++.+..        ++..++++..+|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence            47899999999999999999999999999888765 3 345555555543        2355677777766533

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.72  E-value=0.0062  Score=43.53  Aligned_cols=46  Identities=13%  Similarity=0.096  Sum_probs=35.1

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEE
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR  315 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~  315 (358)
                      ++.|..+||||-|.+++.+|+++|+||.+......+......++++
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~   46 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFR   46 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEE
Confidence            3678899999999999999999999999887654432233344444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.72  E-value=0.014  Score=42.98  Aligned_cols=45  Identities=20%  Similarity=0.370  Sum_probs=35.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-C-CeeEEEEEE
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-N-RRIACVLYV  174 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~-~~~~d~F~v  174 (358)
                      .+.+.+.|+||++++++++|.++|+||......+. + +.+.-.+.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~   48 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT   48 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence            57888999999999999999999999998887653 3 444433433

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.62  E-value=0.022  Score=40.99  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=36.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEE
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN  175 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~  175 (358)
                      .+.+.+.|+||+|++|+.+|.++|++|......+.  ++.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   49 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE   49 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence            46788999999999999999999999999988764  34444444443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.62  E-value=0.012  Score=50.70  Aligned_cols=65  Identities=11%  Similarity=0.141  Sum_probs=47.3

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      +|.|...|+||.|.+|+..|+++|+||.+..+...++...-.+.++- +|    ++...++|.+.|.+.+
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~----d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG----DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC----CHHHHHHHHHHHhcCc
Confidence            48999999999999999999999999999988755544333343432 22    2356677777766444

acetohydroxyacid synthase is a synonym.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.57  E-value=0.013  Score=44.13  Aligned_cols=61  Identities=21%  Similarity=0.321  Sum_probs=44.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..+.+...|+||.|++++++|...|+||.+..+..  .++...-++.+.+   .      ..++.|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhc
Confidence            57899999999999999999999999999999875  3444444454422   2      334556665554

>PRK08577 hypothetical protein; Provisional

Probab=96.56  E-value=0.05  Score=45.62  Aligned_cols=41  Identities=12%  Similarity=0.132  Sum_probs=35.9

Q ss_pred             CCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC
Q 018281          265 DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG  305 (358)
Q Consensus       265 ~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g  305 (358)
                      ....+.|.|.+.|+||+|++|+++|++++++|.+....+..
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            33466799999999999999999999999999999887653

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.54  E-value=0.016  Score=50.07  Aligned_cols=66  Identities=14%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      +|.|...|+||.|.+|+..|+++|+||.+..+....+...-.+.++- +|    ++...+++.+.|.+.++
T Consensus         4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~----~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SG----DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-EC----CHHHHHHHHHHHhcccc
Confidence            58999999999999999999999999999987654433333333331 12    24567778777665443

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.52  E-value=0.014  Score=42.07  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS  303 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T  303 (358)
                      |.+.+.||||.|.+|++.|.++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678899999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.51  E-value=0.022  Score=41.12  Aligned_cols=47  Identities=19%  Similarity=0.431  Sum_probs=36.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEe
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND  176 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~  176 (358)
                      .+.+.++|+||.|++++..|.+++++|.+....+. ++...-.|.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~   49 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG   49 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence            57889999999999999999999999998887764 344443444433

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=96.51  E-value=0.045  Score=46.63  Aligned_cols=82  Identities=12%  Similarity=0.164  Sum_probs=55.4

Q ss_pred             CCCCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCCcCCCH-HHHHHHHHHHHHHHh
Q 018281          263 LEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTE-GEKERVIKCLEAAIR  340 (358)
Q Consensus       263 ~~~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~~l~~~-~~~~~l~~~L~~~l~  340 (358)
                      ........|.+...||||+|++|.++|++.|+||......+. ++.+.=.|-|...      +. .++++|.++|.    
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs------~~~~~L~~Li~~L~----  133 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS------SMEGDIDELLEKLR----  133 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC------ChHHHHHHHHHHHH----
Confidence            344566779999999999999999999999999998876543 3345555555431      11 24555554443    


Q ss_pred             hccCCceEEEEEecC
Q 018281          341 RRVSEVSKFSFYSMG  355 (358)
Q Consensus       341 ~~~~~~~~~~~~~~~  355 (358)
                      . .+...++++.+++
T Consensus       134 ~-i~gV~~V~i~~~~  147 (147)
T PRK04435        134 N-LDGVEKVELIGME  147 (147)
T ss_pred             c-CCCcEEEEEEecC
Confidence            3 2356777777653

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.46  E-value=0.02  Score=41.24  Aligned_cols=44  Identities=30%  Similarity=0.409  Sum_probs=35.0

Q ss_pred             EEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-e-CCEEEEEEEE
Q 018281           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHV   81 (358)
Q Consensus        38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~V   81 (358)
                      +.+.++|+||.+++++..|+++|+||....... . ++...-.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            577899999999999999999999999888765 2 4554433444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.43  E-value=0.012  Score=42.26  Aligned_cols=44  Identities=25%  Similarity=0.419  Sum_probs=37.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC--CeeEEEEEE
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYV  174 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~--~~~~d~F~v  174 (358)
                      +.+.+.|+||++++|+++|.++|+||.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57889999999999999999999999999988743  666666666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.38  E-value=0.0036  Score=45.46  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=35.7

Q ss_pred             EEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEE
Q 018281           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV   81 (358)
Q Consensus        38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V   81 (358)
                      +.+.+.|+||++++++.+|+..|+||......+.+|.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            67789999999999999999999999887655555666655544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.35  E-value=0.023  Score=37.85  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP  306 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~  306 (358)
                      |.+.++|+||++.+|.++|.+++++|..........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~   36 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGD   36 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCC
Confidence            467899999999999999999999999999876543

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.33  E-value=0.042  Score=42.78  Aligned_cols=70  Identities=13%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-ceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      ..|.|-+..+|+||-|+++-..|+++|||+.+..-.-... .-+=.|||.. +|.  .+ ...+++-+.|...|.
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi-eg~--~~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL-DKK--SA-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE-EcC--CC-HHHHHHHHHHHHHhC
Confidence            4466777889999999999999999999999998875443 4455777854 565  23 344444455554443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.27  E-value=0.0037  Score=45.45  Aligned_cols=44  Identities=9%  Similarity=0.025  Sum_probs=34.5

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEE
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI  314 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v  314 (358)
                      +-+.+.||||+|.+|+.+|.+.|++|.+....+.++.+.=.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888766555444444443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.26  E-value=0.022  Score=41.16  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=36.3

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEE
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHV   81 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V   81 (358)
                      ++.+.++|+||.+++++..|+++|+||.+....+. ++...-.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   47 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL   47 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence            57889999999999999999999999998887764 4554433444

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=96.26  E-value=0.041  Score=46.90  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=55.4

Q ss_pred             EEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 018281           24 RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (358)
Q Consensus        24 ~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L  102 (358)
                      ..-+.....+....+.+.+.|+||++++|+.+|+.+|+||....... .+|.+.-.|.+...+.     ...++.|...|
T Consensus        58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L  132 (147)
T PRK04435         58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKL  132 (147)
T ss_pred             eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHH
Confidence            44555555667789999999999999999999999999999888766 4676665666643211     12456666666


Q ss_pred             CC
Q 018281          103 GP  104 (358)
Q Consensus       103 ~~  104 (358)
                      ..
T Consensus       133 ~~  134 (147)
T PRK04435        133 RN  134 (147)
T ss_pred             Hc
Confidence            53

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.26  E-value=0.065  Score=40.37  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEe
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND  176 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~  176 (358)
                      +.+.+..+|+||.|+++...|+++|+||.+...... .+...-.|+|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            356677899999999999999999999998887663 445566788766

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.26  E-value=0.023  Score=42.72  Aligned_cols=61  Identities=11%  Similarity=0.173  Sum_probs=44.4

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe-c-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-D-GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA  338 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T-~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~  338 (358)
                      .|.+...++||.|.+|+..|...|.||.+..+.- . ++...=++-+ . +      +...++|.+.|.+.
T Consensus         5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~------~~~i~ql~kQL~KL   67 (76)
T PRK11152          5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S------ERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C------CchHHHHHHHHhcC
Confidence            5999999999999999999999999999999874 3 3333334433 2 1      23566777666543

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.25  E-value=0.037  Score=38.77  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG  305 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g  305 (358)
                      |.|.+.|+||++.+|++.|.+++++|....+...+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence            46789999999999999999999999999987765

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK08577 hypothetical protein; Provisional

Probab=96.24  E-value=0.055  Score=45.35  Aligned_cols=53  Identities=30%  Similarity=0.449  Sum_probs=42.5

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEe
Q 018281          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (358)
Q Consensus       124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~  176 (358)
                      .....+.+.|.+.|+||+|++|+++|+++|+||.+....+.  ++.+.-.|.+.-
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev  106 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL  106 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence            44568899999999999999999999999999999888773  344445555544

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.20  E-value=0.058  Score=37.76  Aligned_cols=46  Identities=28%  Similarity=0.437  Sum_probs=36.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC-CeeEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~-~~~~d~F~v~~  176 (358)
                      +.+.+.|+||.+..++..|.+++++|....+...+ +...-.|.+..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV   47 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence            45779999999999999999999999999887754 44444455544

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.16  E-value=0.022  Score=41.67  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=36.7

Q ss_pred             EEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (358)
Q Consensus        38 v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~   82 (358)
                      +.+..+|+||.++++++.|+++|+||.+.....  .++...-.|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            467899999999999999999999999887754  456666556553

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.06  E-value=0.047  Score=40.20  Aligned_cols=33  Identities=15%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT  163 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T  163 (358)
                      +.+..+|+||-|++++..|+++|+||.+.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            577899999999999999999999999886554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.01  E-value=0.033  Score=40.69  Aligned_cols=46  Identities=24%  Similarity=0.445  Sum_probs=36.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND  176 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~  176 (358)
                      +.+..+|+||.++++++.|+++|+||.+.....  .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            456899999999999999999999999887755  3456655565544

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK06635 aspartate kinase; Reviewed

Probab=95.98  E-value=0.19  Score=49.96  Aligned_cols=107  Identities=20%  Similarity=0.289  Sum_probs=67.9

Q ss_pred             EEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 018281           36 TVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK  113 (358)
Q Consensus        36 ~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r  113 (358)
                      ..|+|. ..++||.++++..+|.+.|+||....... .+|..--.|.|...+.     +...+.|++ +...+...    
T Consensus       263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~~----  332 (404)
T PRK06635        263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGAE----  332 (404)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCcc----
Confidence            344444 47899999999999999999999654443 3334444566642111     122333333 11111110    


Q ss_pred             cCCceeeeecCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCCcEEEE
Q 018281          114 TWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       114 ~~~~~~v~~~~~~~~t~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A  159 (358)
                           .  .....+...+.|.+   +++||.++++.++|++.|+||...
T Consensus       333 -----~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        333 -----S--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             -----e--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence                 0  12334667788876   689999999999999999999864

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.95  E-value=0.04  Score=40.55  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=30.1

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD  304 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~  304 (358)
                      +.+..+|+||-|.++++.|+++|+||.+....-.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6778899999999999999999999998876543

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.94  E-value=0.04  Score=54.79  Aligned_cols=63  Identities=17%  Similarity=0.194  Sum_probs=47.5

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-----CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-----GPHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-----g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~  337 (358)
                      +.|+|.+.||||+|.+|+++|++.++||.+....+.     +..+.=.|.|.      +.+.+++++|.+.|+.
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            569999999999999999999999999999998764     33444444443      2334677777777663

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.91  E-value=0.02  Score=40.86  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~  164 (358)
                      ++.+..+|+||-|++++++|.++|+||.+......
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~   35 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE   35 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence            36788999999999999999999999988876553

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.80  E-value=0.085  Score=38.46  Aligned_cols=47  Identities=28%  Similarity=0.442  Sum_probs=36.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEE
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN  175 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~  175 (358)
                      +.+.+..+|+||.|.+++.+|.++|+||.+....-.  ++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            478899999999999999999999999998765432  34444445543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.80  E-value=0.31  Score=48.31  Aligned_cols=106  Identities=17%  Similarity=0.278  Sum_probs=68.0

Q ss_pred             CeEEEEEE---ecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      +...|+|.   ..++||.++++..+|.+.|+||..-.....+.  --.|.|...+     .+...+.|++.+... ..  
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~--~Is~~V~~~d-----~~~a~~~L~~~~~~~-~~--  328 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSET--SISLTVDETD-----ADEAVRALKDQSGAA-GL--  328 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCc--eEEEEEeHHH-----HHHHHHHHHHHHHhc-CC--
Confidence            44567777   57889999999999999999997443321221  1235563211     012334444433211 10  


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~  158 (358)
                             ..  .....+...|.|.+.   ++||+++++..+|.+.|+||..
T Consensus       329 -------~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       329 -------DR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             -------ce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence                   01  123346778888875   7899999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.79  E-value=0.033  Score=40.24  Aligned_cols=54  Identities=20%  Similarity=0.337  Sum_probs=37.8

Q ss_pred             CcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          137 DRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       137 DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      |+||.|.+|+++|...|+||.+..+..  .++...-++.+..  +.      ..++.|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhc
Confidence            789999999999999999999999987  4455555555544  11      334556665554

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.60  E-value=0.072  Score=39.67  Aligned_cols=48  Identities=4%  Similarity=0.106  Sum_probs=37.9

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCC
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDG  319 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g  319 (358)
                      |-+..+|+||-|+++-..|+.+|||+.+..-.... ..-+=.|||.. +|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~-~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC-EV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE-Ec
Confidence            55566899999999999999999999998876544 34556777754 45

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.58  E-value=0.077  Score=56.45  Aligned_cols=73  Identities=25%  Similarity=0.147  Sum_probs=52.1

Q ss_pred             EEEecCCC-CceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHH
Q 018281          258 ITVERLED-KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKC  334 (358)
Q Consensus       258 V~v~n~~~-~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~  334 (358)
                      |.|+.... .-.+.|.|.+.||+|||.+|+++|++.++||..+.+.+..  ..+.-.|-|.-      .+-.++.+|.+.
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~  728 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGK  728 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence            55654322 2345789999999999999999999999999999988753  44555555542      334566666665


Q ss_pred             HH
Q 018281          335 LE  336 (358)
Q Consensus       335 L~  336 (358)
                      |.
T Consensus       729 L~  730 (743)
T PRK10872        729 LN  730 (743)
T ss_pred             Hh
Confidence            54

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.41  E-value=0.068  Score=35.45  Aligned_cols=35  Identities=37%  Similarity=0.619  Sum_probs=31.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~  165 (358)
                      |.+.++|+||++++++++|..+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987643

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.39  E-value=0.076  Score=38.73  Aligned_cols=47  Identities=19%  Similarity=0.349  Sum_probs=37.1

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEE
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~   82 (358)
                      +.+.+..+|+||.+.+++.+|+++|+||.+....-  .++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            47889999999999999999999999999876543  345555445553

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.27  E-value=0.046  Score=40.53  Aligned_cols=70  Identities=23%  Similarity=0.212  Sum_probs=46.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      |+++++-||-.||++|-+|..+|+-|.+|+|.-  .+++-..+|.+.-...+..+........+.+.+...|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999965  4455444443332112333433333445555555444

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.23  E-value=0.14  Score=51.03  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=50.0

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-----CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-----~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      .-.+.|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.|.-       .+.++++.+...|++
T Consensus       324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            344789999999999999999999999999999998764     455555555544       134566667666664

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.23  E-value=0.17  Score=37.45  Aligned_cols=49  Identities=4%  Similarity=0.110  Sum_probs=38.2

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCC
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGC  320 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~  320 (358)
                      +-+..+|+||-|++|...|+++|+||.+..-.-. +....=.|||.- .|.
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~-~~~   51 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF-EGH   51 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ECC
Confidence            3455689999999999999999999999976543 446777888864 343

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.22  E-value=0.047  Score=39.47  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=35.9

Q ss_pred             CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHH
Q 018281          277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (358)
Q Consensus       277 DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~  337 (358)
                      |+||.|.+|+..|...|+||.+..+....+...-.+.++- .|.    +...+.|.+.|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v-~~~----~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV-SGD----DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE-ES-----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE-eeC----chhHHHHHHHHhc
Confidence            7899999999999999999999999874333333333332 121    1245556655543

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.21  E-value=0.13  Score=38.47  Aligned_cols=50  Identities=8%  Similarity=0.066  Sum_probs=39.2

Q ss_pred             EEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCc
Q 018281          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCI  321 (358)
Q Consensus       271 l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~  321 (358)
                      |-+..+|+||-|+++-..|+.+|+|+.+..-.... ...+=.|||.. +|.+
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~-e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC-ECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE-EcCH
Confidence            44556899999999999999999999999887544 44566788864 4554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=95.08  E-value=1.4  Score=43.72  Aligned_cols=109  Identities=16%  Similarity=0.187  Sum_probs=67.2

Q ss_pred             eEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCC
Q 018281          128 HTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDD  205 (358)
Q Consensus       128 ~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~  205 (358)
                      ...|++. ..++||+++++..+|.+.|+||....... .++...-.|.+..          +..+...+.|++ +.....
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~  330 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG  330 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC
Confidence            3344444 46789999999999999999999643332 2223445555543          122223333333 110000


Q ss_pred             CcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEe---CCcchhH
Q 018281          206 EDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RDRAKLM  282 (358)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~---~DrpGLL  282 (358)
                                           .                            ..|.+.+    +.+.+.|.+   .++||++
T Consensus       331 ---------------------~----------------------------~~i~~~~----~ia~isvvG~~~~~~~g~~  357 (404)
T PRK06635        331 ---------------------A----------------------------ESVTYDD----DIAKVSVVGVGMRSHPGVA  357 (404)
T ss_pred             ---------------------c----------------------------ceEEEcC----CeEEEEEECCCCCCCchHH
Confidence                                 0                            1122221    455677765   6999999


Q ss_pred             HHHHHHhhcCCeEEEEEE
Q 018281          283 FDIVCTLTDMQYVVFHAA  300 (358)
Q Consensus       283 ~~I~~~l~~~~v~I~~a~  300 (358)
                      ++|.++|++.|++|....
T Consensus       358 a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        358 AKMFEALAEEGINIQMIS  375 (404)
T ss_pred             HHHHHHHHHCCCCEEEEE
Confidence            999999999999998863

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.99  E-value=2.5  Score=41.85  Aligned_cols=108  Identities=19%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             CCeEEEEEE---eCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          126 GDHTAIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       126 ~~~t~v~V~---~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      .+...|+|.   ..++||+++++..+|.++|++|...... ..+ ..-.|.|..          +..++..+.|++.+..
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~-~~Is~~V~~----------~d~~~a~~~L~~~~~~  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSE-TSISLTVDE----------TDADEAVRALKDQSGA  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCC-ceEEEEEeH----------HHHHHHHHHHHHHHHh
Confidence            355577887   5688999999999999999999744322 111 222344432          1223333334432210


Q ss_pred             CCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEe---CCcc
Q 018281          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RDRA  279 (358)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~---~Drp  279 (358)
                       ..                     .                            ..|.+++    +.++|.|.+   .++|
T Consensus       326 -~~---------------------~----------------------------~~i~~~~----~~a~IsvVG~~~~~~~  351 (401)
T TIGR00656       326 -AG---------------------L----------------------------DRVEVEE----GLAKVSIVGAGMVGAP  351 (401)
T ss_pred             -cC---------------------C----------------------------ceEEEeC----CeEEEEEECCCcccCc
Confidence             00                     0                            1122222    456777777   4799


Q ss_pred             hhHHHHHHHhhcCCeEEEEE
Q 018281          280 KLMFDIVCTLTDMQYVVFHA  299 (358)
Q Consensus       280 GLL~~I~~~l~~~~v~I~~a  299 (358)
                      |+++++.++|.+.|++|...
T Consensus       352 g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       352 GVASEIFSALEEKNINILMI  371 (401)
T ss_pred             cHHHHHHHHHHHCCCcEEEE
Confidence            99999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.94  E-value=0.024  Score=43.50  Aligned_cols=73  Identities=18%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             EEEEEeCC-cchhHHHHHHHhhcCCeEEEEEEEEe-----cC----CceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          270 VVNVKCRD-RAKLMFDIVCTLTDMQYVVFHAAISS-----DG----PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       270 ~l~v~~~D-rpGLL~~I~~~l~~~~v~I~~a~i~T-----~g----~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      ++.|.++| ++|.+++|+++|+++|+||...+=-+     .+    ....-.|.|+   |.+ .   ..+.|+.+|... 
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~-~---~~~~lr~~L~~l-   72 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQP-A---DLEALRAALLEL-   72 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCC-C---CHHHHHHHHHHH-
Confidence            37889999 99999999999999999997655321     12    2445567675   333 2   245666665522 


Q ss_pred             hhccCCceEEEEE
Q 018281          340 RRRVSEVSKFSFY  352 (358)
Q Consensus       340 ~~~~~~~~~~~~~  352 (358)
                        ..+-++.++++
T Consensus        73 --a~elgvDIavQ   83 (84)
T cd04871          73 --ASELNVDIAFQ   83 (84)
T ss_pred             --hcccCceEEEe
Confidence              22225666654

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.82  E-value=0.38  Score=35.53  Aligned_cols=46  Identities=17%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      +.+..+|+||-|+++...|+++|+||..-.... .+....-.|+|.-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~   48 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF   48 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            345568999999999999999999999886665 3435566777766

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.81  E-value=0.17  Score=53.72  Aligned_cols=73  Identities=3%  Similarity=0.020  Sum_probs=51.7

Q ss_pred             EEEecCCC-CceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-ceEEEEEEEeCCCCcCCCHHHHHHHHHHH
Q 018281          258 ITVERLED-KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCL  335 (358)
Q Consensus       258 V~v~n~~~-~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-~a~d~F~v~~~~g~~l~~~~~~~~l~~~L  335 (358)
                      |.++.... .-.+.|.|.+.||+|+|.+|++++++.++||.++.+.+..+ .+.-.|-|.-      .+-.++..|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            55654322 23456899999999999999999999999999999887653 4444555542      2345666666555


Q ss_pred             H
Q 018281          336 E  336 (358)
Q Consensus       336 ~  336 (358)
                      .
T Consensus       689 r  689 (702)
T PRK11092        689 R  689 (702)
T ss_pred             h
Confidence            4

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.78  E-value=0.022  Score=43.65  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=43.7

Q ss_pred             EEEEEeCC-cccHHHHHHHHHHhCCCcEEEEEEEe---------cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          130 AIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWT---------HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       130 ~v~V~~~D-rpGLL~~I~~~L~~~g~nI~~A~i~T---------~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      +|+|.|+| +.|++++++++|+++|+||.+.+-.+         ......-.|.+..+    +    ...+.|+..|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~----~~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P----ADLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C----CCHHHHHHHHHH
Confidence            47999999 99999999999999999997654432         11244556777653    1    123568888775

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=94.52  E-value=0.23  Score=52.72  Aligned_cols=73  Identities=8%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             EEEecC-CCCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCcCCCHHHHHHHHHHH
Q 018281          258 ITVERL-EDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCL  335 (358)
Q Consensus       258 V~v~n~-~~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L  335 (358)
                      |.++.. ...-.+.|.|.+.||+|+|.+|+++++..++||.++.+.+.. +.+.-.|-|.      +.+-.++..|...|
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L  672 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI  672 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence            456543 223345789999999999999999999999999999998764 3343344443      23345666665555


Q ss_pred             H
Q 018281          336 E  336 (358)
Q Consensus       336 ~  336 (358)
                      .
T Consensus       673 ~  673 (683)
T TIGR00691       673 K  673 (683)
T ss_pred             h
Confidence            4

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.49  E-value=0.32  Score=35.37  Aligned_cols=59  Identities=17%  Similarity=0.260  Sum_probs=39.7

Q ss_pred             EEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          132 ELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       132 ~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      .|.-+|+||-|.+++.++.. |.||...+-...+ +.+.-.+.+..       .+++..+.+.+.|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-------PDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            57789999999999999999 9999987655432 22222233332       124566777777664

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=94.41  E-value=1.4  Score=44.67  Aligned_cols=106  Identities=14%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      +...|+|.+.   +.||+++++..+|..+|+||.-....+....  -+|.|...+ .    +...+.|++.+......  
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d-~----~~av~~L~~~~~~~~~~--  390 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEAD-L----EKALKALRREFGEGLVR--  390 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHH-H----HHHHHHHHHHHHHhcCc--
Confidence            4456777754   7899999999999999999986544433322  235554211 1    12345555555421110  


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~  158 (358)
                              .  .....+...|.|.|.   +++|+++++..+|...|+||..
T Consensus       391 --------~--i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~  431 (465)
T PRK06291        391 --------D--VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKM  431 (465)
T ss_pred             --------c--eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEE
Confidence                    0  123346677888876   6999999999999999999984

>PRK08210 aspartate kinase I; Reviewed

Probab=94.26  E-value=1.8  Score=42.94  Aligned_cols=99  Identities=17%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             CeEEEEEEecCC-cchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 018281           34 ECTVVKVDSVNK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (358)
Q Consensus        34 ~~~~v~v~~~Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  112 (358)
                      +...|+|.+.+. ||.+++|...|.+.|+||.-...+. . .  -+|.+...         ..+++.+.|... ...   
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~--is~~v~~~---------~~~~a~~~l~~~-~~~---  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-E--VVFTVSDE---------DSEKAKEILENL-GLK---  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-e--EEEEEcHH---------HHHHHHHHHHHh-CCc---
Confidence            445666765444 9999999999999999999764432 2 1  23555421         122333333321 110   


Q ss_pred             ccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281          113 KTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (358)
Q Consensus       113 r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~  158 (358)
                               .....+...|.|.+.   ++||+++++..+|.+.|+||..
T Consensus       333 ---------v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        333 ---------PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             ---------EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence                     112345667777775   7999999999999999999974

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.22  E-value=0.35  Score=35.18  Aligned_cols=59  Identities=10%  Similarity=0.058  Sum_probs=41.2

Q ss_pred             EEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          272 NVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       272 ~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      .|.-+||||=|..+++++.. |.||....-.-.+.....++..-.     +.++++.+++.++|.
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie-----~~~~~~~~~i~~~L~   60 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ-----VPDREDLAELKERLE   60 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE-----eCCHHHHHHHHHHHH
Confidence            56789999999999999999 999988876544433333333322     233567777777765

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=94.13  E-value=0.21  Score=36.20  Aligned_cols=45  Identities=16%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             ceeEEEEEeC----CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe
Q 018281          267 GYSVVNVKCR----DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH  316 (358)
Q Consensus       267 ~~t~l~v~~~----DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~  316 (358)
                      ++..|.|.++    |.||+++.|..+|++.|++|....  |   .-.+.|.|..
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            5678888887    899999999999999999998877  2   2356666653

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.90  E-value=0.3  Score=39.81  Aligned_cols=52  Identities=8%  Similarity=0.086  Sum_probs=40.9

Q ss_pred             eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCC
Q 018281          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGC  320 (358)
Q Consensus       268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~  320 (358)
                      .|.|-+..+|+||-|++|-..|+.+|||+.+..-...+.. -.=.|||. .+|.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId-ieg~   93 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR-CEVH   93 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE-EEeC
Confidence            4557777799999999999999999999999998766544 44567775 3454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.88  E-value=0.94  Score=35.18  Aligned_cols=50  Identities=10%  Similarity=0.162  Sum_probs=40.6

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      ..+.+.+..+|+||-|+++...|+.+|+|+....... .+....-.|+|.-
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi   63 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL   63 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            4466777779999999999999999999999888776 3444566788876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=93.80  E-value=0.28  Score=46.34  Aligned_cols=53  Identities=8%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCCc
Q 018281          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCI  321 (358)
Q Consensus       268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~~  321 (358)
                      .|.|-+..+|+||.||++-.+|+++|||+.+..-.-.+.+ -+=.||| |..|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCC
Confidence            5667777799999999999999999999999998755544 5557777 456754

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.80  E-value=0.36  Score=51.52  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=49.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~  197 (358)
                      ...|.|.+.||+|||++|+.+++..++||.+..+.+.  ++.+...|.|.-.       +..++.++-..|+
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L~  730 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999874  5666666666551       3355666666655

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.62  E-value=0.52  Score=50.21  Aligned_cols=74  Identities=14%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             EEEecCCCC-CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 018281           25 ASVDNSSCP-ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (358)
Q Consensus        25 V~~~~~~~~-~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L  102 (358)
                      |.|+..... -...|.|.+.||+|+|++|+.+++..++||.+.+..+. ++.+...|.+.-      .+-..++.|-..|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            466543222 23488899999999999999999999999999998774 456554555531      2224556666666


Q ss_pred             CC
Q 018281          103 GP  104 (358)
Q Consensus       103 ~~  104 (358)
                      ..
T Consensus       689 r~  690 (702)
T PRK11092        689 RV  690 (702)
T ss_pred             hC
Confidence            54

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=93.49  E-value=0.47  Score=50.05  Aligned_cols=51  Identities=16%  Similarity=0.161  Sum_probs=41.5

Q ss_pred             EEEEecCC-CCceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc
Q 018281          257 EITVERLE-DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH  307 (358)
Q Consensus       257 ~V~v~n~~-~~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~  307 (358)
                      .|+++.+. ..-.+.|.|.+.||+|||.+|+++|+..++||......+.+++
T Consensus       615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~  666 (701)
T COG0317         615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQ  666 (701)
T ss_pred             EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCc
Confidence            45566553 3455679999999999999999999999999999998876444

>PRK09034 aspartate kinase; Reviewed

Probab=93.48  E-value=2.5  Score=42.76  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             eEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 018281           35 CTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (358)
Q Consensus        35 ~~~v~v~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  111 (358)
                      .+.|++.+   .++||.++++...|+++|+||.--   +.+. .--.|.|...+-.   . ..+..+...|...+...  
T Consensus       308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~~~---~-a~~~~l~~el~~~~~~~--  377 (454)
T PRK09034        308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQLT---P-KKEDEILAEIKQELNPD--  377 (454)
T ss_pred             EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHHhh---H-HHHHHHHHHHHHhhCCc--
Confidence            44556653   678999999999999999999864   2222 2234777532110   0 01123333333222110  


Q ss_pred             cccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEE
Q 018281          112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEV  161 (358)
Q Consensus       112 ~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i  161 (358)
                             .  .....+...|.+.|.   ++||+++++..+|.+.|+||.....
T Consensus       378 -------~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        378 -------E--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ  421 (454)
T ss_pred             -------e--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence                   0  123346678888654   7899999999999999999986544

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.13  E-value=0.43  Score=44.84  Aligned_cols=54  Identities=6%  Similarity=0.128  Sum_probs=44.0

Q ss_pred             ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCCc
Q 018281          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCI  321 (358)
Q Consensus       267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~~  321 (358)
                      ..|.|-+..+|+||-|+++-..|+.+|||+.+....-.+.. ..=.||| |-.|+.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCc
Confidence            46778888899999999999999999999999998755555 4455666 566766

>PRK06291 aspartate kinase; Provisional

Probab=93.07  E-value=8.4  Score=39.10  Aligned_cols=111  Identities=17%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       126 ~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      .+...|+|.+.   +.||+++++..+|.++|++|......+..  ..-.|.|..          ...++..+.|++.+..
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~----------~d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE----------ADLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence            35567788764   68999999999999999999865333211  222344433          1222333334443321


Q ss_pred             CCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeC---Ccc
Q 018281          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA  279 (358)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~---Drp  279 (358)
                      ...                                                  ..|++.+    +..+|.|.+.   ++|
T Consensus       387 ~~~--------------------------------------------------~~i~~~~----~~a~IsvvG~gm~~~~  412 (465)
T PRK06291        387 GLV--------------------------------------------------RDVTFDK----DVCVVAVVGAGMAGTP  412 (465)
T ss_pred             hcC--------------------------------------------------cceEEeC----CEEEEEEEcCCccCCc
Confidence            000                                                  0122222    4567888774   799


Q ss_pred             hhHHHHHHHhhcCCeEEEEEEEE
Q 018281          280 KLMFDIVCTLTDMQYVVFHAAIS  302 (358)
Q Consensus       280 GLL~~I~~~l~~~~v~I~~a~i~  302 (358)
                      |++.++..+|.+.|++|....-.
T Consensus       413 gv~~rif~aL~~~~I~v~~isqg  435 (465)
T PRK06291        413 GVAGRIFSALGESGINIKMISQG  435 (465)
T ss_pred             ChHHHHHHHHHHCCCCEEEEEec
Confidence            99999999999999999865543

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.03  E-value=0.51  Score=42.54  Aligned_cols=53  Identities=21%  Similarity=0.289  Sum_probs=42.1

Q ss_pred             cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEE
Q 018281          123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVN  175 (358)
Q Consensus       123 ~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~  175 (358)
                      +..+....+.+...|+||.+..++.+|.++|+||...++..  .++.+.-+..+.
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD  197 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID  197 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence            34445667788889999999999999999999999999987  456655555443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.71  E-value=1.1  Score=33.27  Aligned_cols=46  Identities=11%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      +.+..+|+||-|+++...|+.+|+|+..-.... .+....-.|+|.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            445558999999999999999999999887776 4444566788876

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK08210 aspartate kinase I; Reviewed

Probab=92.62  E-value=8.6  Score=38.13  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=28.0

Q ss_pred             CeEEEEEEeCCc-ccHHHHHHHHHHhCCCcEEEEEE
Q 018281          127 DHTAIELIGRDR-PGLLSEISAVLANLRFNVAAAEV  161 (358)
Q Consensus       127 ~~t~v~V~~~Dr-pGLL~~I~~~L~~~g~nI~~A~i  161 (358)
                      +...|+|.+.+. ||.+++|..+|.++|+||.....
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~  305 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINI  305 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence            455667766554 99999999999999999987633

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.48  E-value=0.93  Score=48.25  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=51.6

Q ss_pred             EEEecCCC-CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 018281           25 ASVDNSSC-PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (358)
Q Consensus        25 V~~~~~~~-~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L  102 (358)
                      |.|..... .-.+.|.|.+.||+|+|++|+.+++..++||.+.++.+. ++.+.-.|.|.      +.+-..+..|...|
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L  672 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI  672 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence            45654322 233588899999999999999999999999999999775 56655445553      12224556666666


Q ss_pred             CC
Q 018281          103 GP  104 (358)
Q Consensus       103 ~~  104 (358)
                      ..
T Consensus       673 ~~  674 (683)
T TIGR00691       673 KT  674 (683)
T ss_pred             hC
Confidence            53

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.34  E-value=0.56  Score=33.91  Aligned_cols=46  Identities=26%  Similarity=0.467  Sum_probs=34.9

Q ss_pred             CCeEEEEEEeC----CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          126 GDHTAIELIGR----DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       126 ~~~t~v~V~~~----DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      .+...|+|.++    |.||++++++..|++.|++|....  |   ...+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            35667888887    799999999999999999998665  2   3345566655

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.23  E-value=0.47  Score=40.85  Aligned_cols=47  Identities=15%  Similarity=0.413  Sum_probs=37.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CC-eeEEEEEEEe
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NR-RIACVLYVND  176 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~-~~~d~F~v~~  176 (358)
                      -+.+.+.++||.|.++++.++++|.||..++.+.. +| .+.-.|-+.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence            46788999999999999999999999999999983 33 3444444443

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=92.18  E-value=0.15  Score=46.56  Aligned_cols=50  Identities=16%  Similarity=0.174  Sum_probs=38.7

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEE--EEEEEe
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMD--VFHVID   83 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d--~f~V~~   83 (358)
                      ...+|.++..|.||.+++|+|+|+..|.||.+--+.-.....+-  +.+++.
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~G  127 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQG  127 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEec
Confidence            44689999999999999999999999999998888653333333  445543

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.18  E-value=0.42  Score=41.15  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.7

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCC
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g   73 (358)
                      -+.+.+.|+||.|.++++.++++|.||.-|+.+. .+|
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g   41 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG   41 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence            4778899999999999999999999999999997 455

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=92.07  E-value=1.6  Score=32.52  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=37.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      +.+..+|+||-|+++...|+.+|+|+..-+... .+....-.|+|.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            445568999999999999999999999888776 4455667788876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=91.80  E-value=15  Score=40.23  Aligned_cols=114  Identities=12%  Similarity=0.137  Sum_probs=71.3

Q ss_pred             CCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          125 VGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       125 ~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ..+...|+|.+.   .+||+++++..+|.++|++|......+ . ...-.|.|..          +..+.....|++.+.
T Consensus       312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-S-e~sIsf~V~~----------~d~~~av~~L~~~f~  379 (819)
T PRK09436        312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-S-EYSISFCVPQ----------SDAAKAKRALEEEFA  379 (819)
T ss_pred             eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-C-CceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence            456678888765   689999999999999999997554332 1 1223344443          122233333443331


Q ss_pred             CCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeC---Cc
Q 018281          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DR  278 (358)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~---Dr  278 (358)
                      ....       .           .+.                            ..|++.+    +..+|.|.+.   ++
T Consensus       380 ~el~-------~-----------~~~----------------------------~~i~~~~----~valIsvvG~gm~~~  409 (819)
T PRK09436        380 LELK-------E-----------GLL----------------------------EPLEVEE----NLAIISVVGDGMRTH  409 (819)
T ss_pred             HHhc-------c-----------CCc----------------------------ceEEEeC----CEEEEEEEccCcccC
Confidence            1110       0           000                            1233332    5667888775   78


Q ss_pred             chhHHHHHHHhhcCCeEEEEEE
Q 018281          279 AKLMFDIVCTLTDMQYVVFHAA  300 (358)
Q Consensus       279 pGLL~~I~~~l~~~~v~I~~a~  300 (358)
                      ||++.++-++|.+.|++|....
T Consensus       410 ~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        410 PGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             cCHHHHHHHHHHHCCCCEEEEE
Confidence            9999999999999999998765

>PRK06382 threonine dehydratase; Provisional

Probab=91.49  E-value=1.5  Score=43.65  Aligned_cols=68  Identities=28%  Similarity=0.243  Sum_probs=49.1

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE----e-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW----T-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~----T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      .....+.+.|.-+|+||-|.+++..|.++|+||.+....    . ..+...-.|.|...       +++..+.|.+.|.+
T Consensus       326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            355678999999999999999999999999999877664    2 23455666666551       22444456666654

>PRK09034 aspartate kinase; Reviewed

Probab=91.38  E-value=14  Score=37.32  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=30.1

Q ss_pred             ceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS  303 (358)
Q Consensus       267 ~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T  303 (358)
                      +.+.|.|.+   .++||++.++-.+|.+.|++|....-.+
T Consensus       384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            445677754   4799999999999999999999886444

>TIGR00657 asp_kinases aspartate kinase

Probab=91.36  E-value=8.5  Score=38.70  Aligned_cols=108  Identities=21%  Similarity=0.281  Sum_probs=65.6

Q ss_pred             CeEEEEEEec-CC-cchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 018281           34 ECTVVKVDSV-NK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (358)
Q Consensus        34 ~~~~v~v~~~-Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  111 (358)
                      +...|+|.+. .. +|.++++...|..+|+||.-....+...  --.|.|...+ .    +...+.|..... ....   
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~--sIs~~I~~~~-~----~~a~~~L~~~~~-~~~~---  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSET--SISFTVDKED-A----DQAKTLLKSELN-LSAL---  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCc--eEEEEEEHHH-H----HHHHHHHHHHHH-hcCc---
Confidence            4455666653 33 7999999999999999998665333221  1235554221 0    112222222111 0000   


Q ss_pred             cccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281          112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (358)
Q Consensus       112 ~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~  160 (358)
                            ..  .....+...|++.+.   +.||+++++..+|+..|+||....
T Consensus       370 ------~~--I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 ------SS--VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ------ce--EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                  01  123446778888654   789999999999999999997654

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.20  E-value=2.5  Score=32.18  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=39.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ++.|.-+|+||-|++++.+|.  +.||....-.. ..+...-.+.+..+ ++     ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence            577889999999999999999  66666444332 22444444444441 11     3556667776654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.19  E-value=0.83  Score=41.18  Aligned_cols=48  Identities=15%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV   81 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V   81 (358)
                      ....+.+.-.|+||...+|+.+|.++|+||-..++..  .+|.++-++.|
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            3445667779999999999999999999999999986  57877755444

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=91.17  E-value=13  Score=37.55  Aligned_cols=120  Identities=14%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             CCeEEEEEEe-c--CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281           33 PECTVVKVDS-V--NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (358)
Q Consensus        33 ~~~~~v~v~~-~--DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (358)
                      .+.+.|+|.+ .  ..+|..++|.+.|..+|+||.--........  -.|.+...+.     +...+.|++...+... +
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~  376 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-E  376 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-e
Confidence            4556677774 2  3459999999999999999974433322222  3477743211     1344455554443321 1


Q ss_pred             CCcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       110 ~~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                                  .....+.-.|.+.+.   ..||..+++..+|++.|+||....    .....-.|.|..
T Consensus       377 ------------v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~  430 (447)
T COG0527         377 ------------VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE  430 (447)
T ss_pred             ------------EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence                        112235556777754   678999999999999999999766    223344555544

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=91.05  E-value=4.8  Score=43.85  Aligned_cols=113  Identities=16%  Similarity=0.203  Sum_probs=72.0

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281           33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (358)
Q Consensus        33 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (358)
                      .+...|+|.+.   .+||+++++...|.++|+||.-....+ +.. --+|.|...+.     +...+.|++.+...+...
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~-sIsf~V~~~d~-----~~av~~L~~~f~~el~~~  385 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEY-SISFCVPQSDA-----AKAKRALEEEFALELKEG  385 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCc-eEEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence            35567888754   689999999999999999997554443 222 22466643211     123444554443222110


Q ss_pred             CCcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (358)
Q Consensus       110 ~~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~  160 (358)
                           ... .  .....+...|.|.|.   ++||+++++..+|.+.|+||....
T Consensus       386 -----~~~-~--i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        386 -----LLE-P--LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             -----Ccc-e--EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence                 000 1  123346778888876   789999999999999999998543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=90.61  E-value=0.57  Score=46.03  Aligned_cols=50  Identities=12%  Similarity=0.062  Sum_probs=39.3

Q ss_pred             ceeEEEEEeC-CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeC
Q 018281          267 GYSVVNVKCR-DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHM  317 (358)
Q Consensus       267 ~~t~l~v~~~-DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~  317 (358)
                      ..+.|.+.-+ |+||-|++|+.+|+++||||.+..+ .....-+-.|||...
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            3456777776 9999999999999999999999999 333333434998754

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.59  E-value=1.3  Score=46.90  Aligned_cols=64  Identities=27%  Similarity=0.354  Sum_probs=46.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCe-eEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR-IACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~-~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~  197 (358)
                      -.+.|.|.+.||+|+|++|+.+|+..++||......+.++. +.-.|.+.-       .+...+..+-..|.
T Consensus       626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~  690 (701)
T COG0317         626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK  690 (701)
T ss_pred             eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence            45678999999999999999999999999999998875433 444444444       13345555555554

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.53  E-value=2.5  Score=32.10  Aligned_cols=60  Identities=10%  Similarity=0.034  Sum_probs=36.8

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      ++.|.-+||||=|.+++++|...  ||....-.-. .+.+.-.+-+...+|     ++..+++.+.|.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~~a--nI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~   63 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPR--NITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLK   63 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhCCC--ceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHH
Confidence            57888999999999999999944  4443333222 233443343432211     456677776665

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=90.27  E-value=1.3  Score=43.86  Aligned_cols=53  Identities=8%  Similarity=0.189  Sum_probs=42.5

Q ss_pred             eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEE-ecCCceEEEEEEEeCCCCc
Q 018281          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS-SDGPHASQEYYIRHMDGCI  321 (358)
Q Consensus       268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~-T~g~~a~d~F~v~~~~g~~  321 (358)
                      .|.|-+..+|+||.|+++-.+|+.+|||+.+..-. +.+..-+=.|||- ..|..
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid-~eg~~  350 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLD-VQANL  350 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEE-EeCCC
Confidence            56677778899999999999999999999999987 4445566677774 56644

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.98  E-value=0.64  Score=46.38  Aligned_cols=49  Identities=27%  Similarity=0.341  Sum_probs=43.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEE
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN  175 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~  175 (358)
                      ....|.+.-.|+||.++.|+.+|+++|+||...+..+.++.+.-+|-+.
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D  385 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD  385 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence            6678888999999999999999999999999999988887777766553

>PRK06382 threonine dehydratase; Provisional

Probab=89.89  E-value=1.8  Score=43.04  Aligned_cols=65  Identities=12%  Similarity=0.252  Sum_probs=44.9

Q ss_pred             CceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe----c-CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS----D-GPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       266 ~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T----~-g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      ...+.|.|.-+||||-|.+|++.|.++|+||.+.....    . -+.+.=+|-|..      .++...++|.+.|.
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet------~~~~~~~~v~~~L~  397 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV------RGQDHLDRILNALR  397 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe------CCHHHHHHHHHHHH
Confidence            35678999999999999999999999999998876641    1 123333444432      12345556666655

>PLN02551 aspartokinase

Probab=89.83  E-value=16  Score=37.69  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=77.7

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChh---HHHHHHHHHCCCCC
Q 018281           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGK---TIDYIEKALGPKGH  107 (358)
Q Consensus        34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~---~~~~l~~~L~~~~~  107 (358)
                      +.+.|+|.+.   +.+|.++++...|..+|+||.--  .+..  .--+|.+...+ .+ ..+.   ..+.+...|.. +.
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~-~~-~~~~i~~~l~~l~~el~~-~~  437 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSK-LW-SRELIQQELDHLVEELEK-IA  437 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhH-hh-hhhhHHHHHHHHHHHhhc-CC
Confidence            4567777654   68999999999999999999855  2322  22346664322 11 0000   11112122221 00


Q ss_pred             CCCCcccCCceeeeecCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCC
Q 018281          108 ITAGAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGD  185 (358)
Q Consensus       108 ~~~~~r~~~~~~v~~~~~~~~t~v~V~~~--DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~  185 (358)
                                 .  .....+...|.|.|.  .+||+++++..+|...|+||......+  ....-.|.|..         
T Consensus       438 -----------~--V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga--SeinIS~vV~~---------  493 (521)
T PLN02551        438 -----------V--VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA--SKVNISLIVND---------  493 (521)
T ss_pred             -----------e--EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC--CCcEEEEEEeH---------
Confidence                       1  123346667777764  689999999999999999997544332  22233354544         


Q ss_pred             hHHHHHHHHHHHHHH
Q 018281          186 QTRLSLMEEQLKNIL  200 (358)
Q Consensus       186 ~~~~~~L~~~L~~~L  200 (358)
                       ...++.-+.|++.+
T Consensus       494 -~d~~~Av~aLH~~F  507 (521)
T PLN02551        494 -DEAEQCVRALHSAF  507 (521)
T ss_pred             -HHHHHHHHHHHHHH
Confidence             23344455566555

>PRK09181 aspartate kinase; Validated

Probab=89.49  E-value=5.1  Score=40.80  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=66.8

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      +.+.|+|.+.   +.+|+.+++...|.++|+||.  .+.+..  .--+|.|...  .     ...+++.+.|...+... 
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~~~-  395 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYPNA-  395 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcCCc-
Confidence            4556666543   689999999999999999998  333322  2234666432  1     12233333443322211 


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeCC--cccHHHHHHHHHHhCCCcEEEE
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGRD--RPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~D--rpGLL~~I~~~L~~~g~nI~~A  159 (358)
                              .+  .. .+...|.+.|..  +||+.+++..+|.+.|+||..-
T Consensus       396 --------~i--~~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i  435 (475)
T PRK09181        396 --------EV--TV-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLAL  435 (475)
T ss_pred             --------eE--EE-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEE
Confidence                    11  22 567788888765  8999999999999999999743

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=89.44  E-value=1.2  Score=38.29  Aligned_cols=66  Identities=18%  Similarity=0.352  Sum_probs=45.8

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      .-++.+.-.|.||.|+++++.|+..|+||.+..+.- .. +...-++.+ .   |    ++...+++...|....+
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~---g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-S---G----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-c---C----CcchHHHHHHHHHhhcc
Confidence            346788899999999999999999999999988864 33 322223332 2   1    22445677777776543

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.67  E-value=1.5  Score=42.86  Aligned_cols=50  Identities=10%  Similarity=0.078  Sum_probs=40.1

Q ss_pred             ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe
Q 018281          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH  316 (358)
Q Consensus       267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~  316 (358)
                      .++.|.|.-+||||-|..|+..|...||||.+.+|.-..+...-++.+..
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            56679999999999999999999999999999999644444444444443

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.59  E-value=1.9  Score=42.14  Aligned_cols=52  Identities=15%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      -..++.|.|.-+|+||-+++++..|...|+||.+.+|.-..+...-++.+.-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            3577899999999999999999999999999999999764444444444444

>PRK08198 threonine dehydratase; Provisional

Probab=88.53  E-value=4.1  Score=40.43  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=33.9

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW  162 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~  162 (358)
                      ......+.|.-+|+||-|+++...+.+.|.||.+....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            44566899999999999999999999999999988765

>PRK09084 aspartate kinase III; Validated

Probab=88.44  E-value=23  Score=35.76  Aligned_cols=103  Identities=16%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      +...|+|.+.   +.+|.++++...|.++|+||.--.  +. . .--+|.|...+-.........+++...|.. +.   
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss-e-~sIs~~i~~~~~~~~~~~~~~~~l~~el~~-~~---  376 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS-E-VSVSLTLDTTGSTSTGDTLLTQALLTELSQ-LC---  376 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc-C-cEEEEEEechhhhhhhhHHHHHHHHHHHhc-CC---
Confidence            4556777654   689999999999999999998554  22 2 223466653221110001122344444432 10   


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCC
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRF  154 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~  154 (358)
                              .  .....+...|.+.|.   ++||+++++..+|...++
T Consensus       377 --------~--i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        377 --------R--VEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             --------e--EEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence                    0  122346778888886   789999999999987543

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.23  E-value=1.9  Score=43.23  Aligned_cols=47  Identities=9%  Similarity=0.160  Sum_probs=37.7

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEe
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH  316 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~  316 (358)
                      .|.+...|+||.|.+|+.+|.+++++|.+..-..........+++++
T Consensus       350 ylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        350 YLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             EEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            49999999999999999999999999998865543334455666665

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.18  E-value=0.78  Score=45.75  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHH
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIE   99 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~   99 (358)
                      ....|.+.-+|+||.+++|+..|+++|+||...+..+.++.++-+|-+   ++. + +++.++.|+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~~-~-~~~~~~~i~  397 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DAD-Y-AEEALDALK  397 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CCC-C-cHHHHHHHH
Confidence            556788899999999999999999999999999998888877755433   332 2 234555555

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=88.09  E-value=1.4  Score=40.52  Aligned_cols=50  Identities=26%  Similarity=0.400  Sum_probs=38.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEE--EEEEEe
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIAC--VLYVND  176 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d--~F~v~~  176 (358)
                      ...++.+...|.||.+.+|+++|+..|+||.+.-+--....+..  +..++.
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~G  127 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQG  127 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEec
Confidence            44588899999999999999999999999998887653333332  444554

>PRK11899 prephenate dehydratase; Provisional

Probab=88.01  E-value=4.4  Score=38.24  Aligned_cols=49  Identities=18%  Similarity=0.143  Sum_probs=41.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      .|.+.+..+|+||.|+++..+|+.+|+|+..-...- .++...-.|||.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            566777779999999999999999999999888876 4555677888876

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=87.83  E-value=2  Score=34.94  Aligned_cols=49  Identities=12%  Similarity=0.049  Sum_probs=38.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec-CCeeEEEEEEEe
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND  176 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~-~~~~~d~F~v~~  176 (358)
                      .+.+.+..+|+||-|+++...|+.+|+|+........ +....-.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            4666666799999999999999999999998877763 344455677765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=87.26  E-value=6.2  Score=27.66  Aligned_cols=34  Identities=9%  Similarity=0.051  Sum_probs=27.9

Q ss_pred             EEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281          270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS  303 (358)
Q Consensus       270 ~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T  303 (358)
                      .|.+.+   .+.||++++|.++|.+.|+++....-.+
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~   39 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS   39 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            455655   5889999999999999999998885543

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.55  E-value=6.2  Score=38.78  Aligned_cols=67  Identities=19%  Similarity=0.240  Sum_probs=46.6

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-----cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-----~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ......+.|.-+|+||.|++++..+.++|.||.+..-..     ..+.+.-.+.+...       +++..+.|.+.|.+
T Consensus       302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD  373 (380)
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            345558999999999999999999999999998875441     22444455555441       23455566666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=86.31  E-value=6  Score=29.81  Aligned_cols=64  Identities=25%  Similarity=0.348  Sum_probs=51.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      .+.+.+...++|+.|.++-++....|+.+.....++  .+|.+.-.|.|..+   .++      +.|.+.|++..
T Consensus         3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~------~lL~~QLeKl~   68 (86)
T COG3978           3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSV------DLLTSQLEKLY   68 (86)
T ss_pred             eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CCh------HHHHHHHHHHc
Confidence            468899999999999999999999999999988888  36777777777552   333      45777777654

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=85.86  E-value=6.1  Score=45.67  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             CCCCCCCCChH----HHHHHhhcC---CCEEEEecCC--CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--
Q 018281            2 ANAYWPYFDPE----YESLSLRIN---PPRASVDNSS--CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--   70 (358)
Q Consensus         2 ~~~yf~~~~~~----h~~~~~~~~---~p~V~~~~~~--~~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--   70 (358)
                      +.+|=..|+|+    +..+++++.   ...+.+....  .++.+.+.+|.+.+|..|+++.-+|..+|+.|.+.+-+.  
T Consensus       447 p~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~  526 (1528)
T PF05088_consen  447 PASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIR  526 (1528)
T ss_pred             CHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceee
Confidence            45677778888    677777663   3455554332  336789999999999999999999999999999998875  


Q ss_pred             e-C--CEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281           71 D-G--GWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (358)
Q Consensus        71 ~-~--g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~  103 (358)
                      . +  ...+..|.+..+.+.........+.++++|.
T Consensus       527 ~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~  562 (1528)
T PF05088_consen  527 RADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE  562 (1528)
T ss_pred             cCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence            2 2  3467779998777765444455556665554

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=85.73  E-value=6.7  Score=29.13  Aligned_cols=26  Identities=8%  Similarity=-0.015  Sum_probs=24.1

Q ss_pred             eCCcchhHHHHHHHhhcCCeEEEEEE
Q 018281          275 CRDRAKLMFDIVCTLTDMQYVVFHAA  300 (358)
Q Consensus       275 ~~DrpGLL~~I~~~l~~~~v~I~~a~  300 (358)
                      .+++||++++|-.+|+++|++|....
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~   36 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLIT   36 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence            47899999999999999999999984

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=85.56  E-value=4.3  Score=40.68  Aligned_cols=52  Identities=19%  Similarity=0.295  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      ....+.+.+...|+||.|++|+++|.++|+||.+.......+....++.++.
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            3456789999999999999999999999999997766544334455666666

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=84.73  E-value=9.6  Score=28.26  Aligned_cols=56  Identities=9%  Similarity=0.053  Sum_probs=36.2

Q ss_pred             eCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCc-CCCHHHHHHHHHHHHH
Q 018281          275 CRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCI-LDTEGEKERVIKCLEA  337 (358)
Q Consensus       275 ~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~-l~~~~~~~~l~~~L~~  337 (358)
                      ..+.||++++|-++|++.|++|.+..-   ++   +.+-++-..... +.+ +..++|.+.|..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~---~~isftv~~~~~~~~~-~~~~~l~~el~~   67 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE---TNVTVSLDPDPNGLDP-DVLDALLDDLNQ   67 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEe---CC---CEEEEEEeCcccccch-HHHHHHHHHHHh
Confidence            368899999999999999999999842   33   334333222221 232 345566666553

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=84.43  E-value=2.5  Score=41.54  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=37.5

Q ss_pred             CeEEEEEEeC-CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       127 ~~t~v~V~~~-DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      ..+.+.+.-+ |+||.|++++.+|..+|+||.+-++.- .....-.|+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~-~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR-TPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec-ccCceEEEEEEE
Confidence            4667777776 999999999999999999999999832 222222288766

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=84.39  E-value=3.7  Score=35.40  Aligned_cols=62  Identities=21%  Similarity=0.269  Sum_probs=44.2

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-e-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  104 (358)
                      -.+.+.-.|.||.++++++.|+..|+||.+-.+. | .++..--++.+.   |.    +...++|.+.|..
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~k   68 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNK   68 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHh
Confidence            4678889999999999999999999999998885 5 344333333332   11    2355666666653

>PRK08198 threonine dehydratase; Provisional

Probab=84.07  E-value=6.3  Score=39.08  Aligned_cols=36  Identities=14%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS   69 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~   69 (358)
                      ....+.|.-+|+||-|++++.+++..|.||.+-...
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            445889999999999999999999999999998875

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=83.71  E-value=39  Score=37.19  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=63.8

Q ss_pred             CeEEEEEE---ecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      +.+.|+|.   ..+.+|.+++|...|..+|+||.--  .+. + .--+|.+.+.+.  ......++.+...|.. +.   
T Consensus       321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e-~sis~~i~~~~~--~~~~~~~~~l~~~l~~-~~---  390 (861)
T PRK08961        321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-E-TNVTVSLDPSEN--LVNTDVLAALSADLSQ-IC---  390 (861)
T ss_pred             CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-C-CEEEEEEccccc--cchHHHHHHHHHHHhh-cC---
Confidence            45566774   3468999999999999999999643  232 2 222355543221  1011234444445542 11   


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcE
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNV  156 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI  156 (358)
                              .+  ....+...|.|+|.   .+||+.+++..+|.+.|+++
T Consensus       391 --------~i--~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        391 --------RV--KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             --------cE--EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence                    01  12235678888886   78999999999999977655

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=83.62  E-value=62  Score=35.41  Aligned_cols=103  Identities=12%  Similarity=0.070  Sum_probs=65.1

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      +.+.|+|.+.   +.||.++++..+|..+|+||.--...+. +. .-.|.+...         ..+.+.+.|.... .. 
T Consensus       316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~~---------~~~~~~~~l~~~~-~~-  382 (810)
T PRK09466        316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTSE---------VADSALKLLDDAA-LP-  382 (810)
T ss_pred             CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeHH---------HHHHHHHHHHhhc-CC-
Confidence            4456677654   7789999999999999999975443322 22 223445311         1123333333211 10 


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEE
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~  158 (358)
                             ..+  ....+...|.|.|.   .+||+.+++..+|.+.|+++..
T Consensus       383 -------~~i--~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~  424 (810)
T PRK09466        383 -------GEL--KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW  424 (810)
T ss_pred             -------CcE--EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence                   111  22346778889885   6899999999999999999853

>PRK12483 threonine dehydratase; Reviewed

Probab=83.14  E-value=34  Score=35.34  Aligned_cols=118  Identities=16%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC-CCCC-
Q 018281           33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK-GHIT-  109 (358)
Q Consensus        33 ~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-~~~~-  109 (358)
                      .....+.|.-+||||-|.+++.+|...  ||.+..-.. ..+. ..+++...-.+.    ++..+.|.+.|.+. +... 
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR----HDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence            355678889999999999999999988  888766554 2233 333444332221    12236777777532 2111 


Q ss_pred             ---C-CcccCCceeeee--cCCCCeEEEEEEeCCcccHHHHHHHHHHh-CCCcEE
Q 018281          110 ---A-GAKTWPSKQVGV--HSVGDHTAIELIGRDRPGLLSEISAVLAN-LRFNVA  157 (358)
Q Consensus       110 ---~-~~r~~~~~~v~~--~~~~~~t~v~V~~~DrpGLL~~I~~~L~~-~g~nI~  157 (358)
                         . ..+...+.-|.-  .....--.+.|.-|.|||-|.+++.+|.. .+++-.
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF  470 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLF  470 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeee
Confidence               0 000000000100  01123346778889999999999999985 244443

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=83.13  E-value=8.7  Score=36.19  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..|.+-+..+|+||.|+++.+.|+.+|+|+......- .++...-.|+|.-  .|. ..+    ..++++|.+
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~-~~~----~~v~~AL~e  258 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGH-IDD----PLVKEALEE  258 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecC-cCc----HhHHHHHHH
Confidence            4778888888999999999999999999998877775 4555667788866  344 222    345555554

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=83.09  E-value=2  Score=36.84  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             CeEEEEEE--ecCCcchHHHHHHHHhhCCceEEEEEE
Q 018281           34 ECTVVKVD--SVNKPGILLEVVQVLSDLDLIITKAYI   68 (358)
Q Consensus        34 ~~~~v~v~--~~DrpGLl~~i~~~L~~~glnI~~A~I   68 (358)
                      ++-+|+++  ..+.||+++.+++.++++||+|..+-.
T Consensus        92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            44455555  477899999999999999999997654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.98  E-value=3.2  Score=42.81  Aligned_cols=52  Identities=21%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEE
Q 018281          123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYV  174 (358)
Q Consensus       123 ~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v  174 (358)
                      +-.+....+-+...|+||.+..++..|.++++||...++..  .++.+.-++.+
T Consensus       447 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        447 DAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             EeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            33445566677789999999999999999999999999876  44555555544

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=82.86  E-value=14  Score=25.85  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=26.4

Q ss_pred             EEEEEe---CCcccHHHHHHHHHHhCCCcEEEEEE
Q 018281          130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAEV  161 (358)
Q Consensus       130 ~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~i  161 (358)
                      .|.+.|   ++.||+++++.++|.+.|+++.....
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~   37 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ   37 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            466666   47899999999999999999976543

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=82.86  E-value=12  Score=26.24  Aligned_cols=34  Identities=9%  Similarity=0.108  Sum_probs=28.0

Q ss_pred             EEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281          270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS  303 (358)
Q Consensus       270 ~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T  303 (358)
                      .|.+.+   .++||+++++.++|.+.|+++....-.+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            455655   4789999999999999999998886544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=81.91  E-value=10  Score=26.89  Aligned_cols=27  Identities=15%  Similarity=0.090  Sum_probs=24.2

Q ss_pred             eCCcchhHHHHHHHhhcCCeEEEEEEE
Q 018281          275 CRDRAKLMFDIVCTLTDMQYVVFHAAI  301 (358)
Q Consensus       275 ~~DrpGLL~~I~~~l~~~~v~I~~a~i  301 (358)
                      .+|+||.+.++.++|.+.|++|....-
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~   35 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQ   35 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence            479999999999999999999996654

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK09224 threonine dehydratase; Reviewed

Probab=81.77  E-value=52  Score=33.79  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC-CCCC---
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK-GHIT---  109 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-~~~~---  109 (358)
                      ....+.|.-|||||-|.+++.+|.  +.||..-+-.-.+.....+|+...-.+.    ++-.+.|.+.|.+. ....   
T Consensus       327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls  400 (504)
T PRK09224        327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS  400 (504)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence            456788889999999999999999  6888876554322222334444332221    12256677777532 1110   


Q ss_pred             -C-CcccCCceeeee--cCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE
Q 018281          110 -A-GAKTWPSKQVGV--HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW  162 (358)
Q Consensus       110 -~-~~r~~~~~~v~~--~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~  162 (358)
                       . ..+...+.-|.-  .....--.+.|.-|.|||-|-+....|. -+.||..-+=.
T Consensus       401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence             0 000000000000  0112334678889999999999999776 77888877764

>TIGR00657 asp_kinases aspartate kinase

Probab=81.47  E-value=62  Score=32.48  Aligned_cols=34  Identities=12%  Similarity=0.084  Sum_probs=28.8

Q ss_pred             ceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEE
Q 018281          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA  300 (358)
Q Consensus       267 ~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~  300 (358)
                      +.+.+.|.+   .++||++++|.++|++.|++|....
T Consensus       377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            456777754   4889999999999999999998876

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=81.23  E-value=17  Score=25.74  Aligned_cols=28  Identities=21%  Similarity=0.531  Sum_probs=24.8

Q ss_pred             EEEEEeC---CcccHHHHHHHHHHhCCCcEE
Q 018281          130 AIELIGR---DRPGLLSEISAVLANLRFNVA  157 (358)
Q Consensus       130 ~v~V~~~---DrpGLL~~I~~~L~~~g~nI~  157 (358)
                      .|.+.|.   +.||+++++..+|.+.|+++.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            5677775   789999999999999999996

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=81.17  E-value=3.1  Score=42.94  Aligned_cols=50  Identities=14%  Similarity=0.323  Sum_probs=39.3

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEE
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYV  174 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v  174 (358)
                      ...+..+-+...|+||.+..++..|.++++||...++..  .++.+.-++.+
T Consensus       448 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~  499 (525)
T TIGR01327       448 EPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL  499 (525)
T ss_pred             ecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc
Confidence            345556667779999999999999999999999988876  45565555544

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=80.87  E-value=15  Score=25.50  Aligned_cols=59  Identities=14%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             EEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          270 VVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       270 ~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      .+.+.+   .++||++.++.++|++.|++|......+.+  ..=.|.+..         +..+++.+.|.+.+
T Consensus         3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~---------~~~~~~~~~Lh~~~   64 (66)
T cd04924           3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE---------DDGWAAVKAVHDEF   64 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH---------HHHHHHHHHHHHHh
Confidence            455555   478999999999999999999888664422  222355543         34455555555544

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=80.86  E-value=10  Score=37.32  Aligned_cols=61  Identities=10%  Similarity=0.184  Sum_probs=41.9

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEe--c---CCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS--D---GPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T--~---g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      .|.|.-+||||-|.++++.+++.|.||....-.-  .   -+.+.=.+.|..      .+++..++|.+.|.
T Consensus       307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet------~~~~~~~~i~~~L~  372 (380)
T TIGR01127       307 RIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET------RGKEHLDEILKILR  372 (380)
T ss_pred             EEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe------CCHHHHHHHHHHHH
Confidence            5899999999999999999999999998875431  1   123333333332      12355666766665

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=80.75  E-value=11  Score=31.29  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=51.2

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..-+.+.+.-.||.|.|+++-.++++.++||...+..- ..|++.-+..+.. . +  .  +...+.+-+.|+.
T Consensus        70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~-s-s--m--~~~V~~ii~kl~k  137 (150)
T COG4492          70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT-S-S--M--EKDVDKIIEKLRK  137 (150)
T ss_pred             ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc-h-h--h--hhhHHHHHHHHhc
Confidence            35567888999999999999999999999999888776 7888888877765 2 1  1  2344555555553

>PRK11898 prephenate dehydratase; Provisional

Probab=80.65  E-value=9.2  Score=36.16  Aligned_cols=53  Identities=6%  Similarity=0.089  Sum_probs=39.5

Q ss_pred             eeEEEEEeCC-cchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCc
Q 018281          268 YSVVNVKCRD-RAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCI  321 (358)
Q Consensus       268 ~t~l~v~~~D-rpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~  321 (358)
                      .|-|-+...+ +||-|+++-..|+++|||+.+..-.-.. ..-+=.|||. .+|..
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd-~eg~~  250 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFID-VEGHI  250 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEE-EEccC
Confidence            4556666654 6999999999999999999999887543 3455677775 45654

>PLN02551 aspartokinase

Probab=80.03  E-value=78  Score=32.73  Aligned_cols=139  Identities=12%  Similarity=0.258  Sum_probs=81.3

Q ss_pred             CCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          125 VGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       125 ~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      ..+.+.|+|.+.   +.+|+++++...|.++|++|....  +. + ..-.|.+..    ..+   ...+.+++.+...+.
T Consensus       363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e-~sIs~~v~~----~~~---~~~~~i~~~l~~l~~  431 (521)
T PLN02551        363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-E-VSISLTLDP----SKL---WSRELIQQELDHLVE  431 (521)
T ss_pred             CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-C-CEEEEEEeh----hHh---hhhhhHHHHHHHHHH
Confidence            345567788655   689999999999999999998662  21 1 223455544    111   112233333332211


Q ss_pred             CCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEe--CCcc
Q 018281          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC--RDRA  279 (358)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~--~Drp  279 (358)
                      . ..                    +.                            ..|.+.+    +..+|.|.+  ..+|
T Consensus       432 e-l~--------------------~~----------------------------~~V~v~~----~vAiISvVG~~~~~~  458 (521)
T PLN02551        432 E-LE--------------------KI----------------------------AVVNLLQ----GRSIISLIGNVQRSS  458 (521)
T ss_pred             H-hh--------------------cC----------------------------CeEEEeC----CEEEEEEEccCCCCc
Confidence            1 10                    00                            1133222    455677765  3689


Q ss_pred             hhHHHHHHHhhcCCeEEEEEEEEecCCceEEE-EEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQE-YYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~-F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      |++.++-++|.+.||+|......+   ..... |.|.+         ...++.-++|...+
T Consensus       459 gvaariF~aLa~~gInV~mIsqga---SeinIS~vV~~---------~d~~~Av~aLH~~F  507 (521)
T PLN02551        459 LILEKVFRVLRTNGVNVQMISQGA---SKVNISLIVND---------DEAEQCVRALHSAF  507 (521)
T ss_pred             cHHHHHHHHHHHCCCCeEEEEecC---CCcEEEEEEeH---------HHHHHHHHHHHHHH
Confidence            999999999999999998876543   22333 44432         34455556666555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1u8s_A	192	Glycine cleavage system transcriptional repressor,	4e-09
2nyi_A	195	Unknown protein; protein structure initiative, PSI	7e-07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID 96
           V+     ++PGI  EVV++++     I  + I+  G  F  +  +             I 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS-------GSPSNIT 60

Query: 97  YIEKALGPKGHITAGAKTW-PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
            +E  L   G           +      +      + +   D+ GL  + +   A  +  
Sbjct: 61  RVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIG 120

Query: 156 VAAAEVWTHNRR 167
           +A+    T ++ 
Sbjct: 121 MASLSAQTISKD 132

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 48.2 bits (114), Expect = 7e-07
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID 96
           VV V   ++ GI+ +    L ++   +  + ++  GG F  +  V             ++
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALE 66

Query: 97  YIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNV 156
                        +                    + + G D  G++  ++AVLA    N+
Sbjct: 67  SALPGFQISTRRASSVAERHVSPDTREYE-----LYVEGPDSEGIVEAVTAVLAKKGANI 121

Query: 157 AAAEVWTH 164
              E  T 
Sbjct: 122 VELETETL 129

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             I ++G D+ G+ ++I+ V++    N+    +   +    C L +        V +  +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 189 LSLMEEQLKNI 199
           L+ + ++L+ +
Sbjct: 59  LTTLMDKLRKV 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 30/204 (14%), Positives = 58/204 (28%), Gaps = 54/204 (26%)

Query: 164 HNRRIACVLYVN--DDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFT 221
             + I  V      D+  C+ V D  +  L +E++ +I+   D           F     
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLRLFWT-LL 72

Query: 222 HVDRRLHQMFFAD---RDYEGGGVTTADQV-DHTPSFKPEITVERLEDKGYSVV------ 271
                + Q F  +    +Y    + +  +     PS    + +E+  D+ Y+        
Sbjct: 73  SKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKY 129

Query: 272 NVKCRDRAKLMFDI---VCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEK 328
           NV    R +    +   +  L   + V+        G           + G      G  
Sbjct: 130 NVS---RLQPYLKLRQALLELRPAKNVLID------G-----------VLGS-----G-- 162

Query: 329 ERVIK-CLEAAIRRRVSEVSKFSF 351
               K  +   +        K  F
Sbjct: 163 ----KTWVALDVCLSYKVQCKMDF 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.79
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.74
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.7
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.93
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.87
2f06_A	144	Conserved hypothetical protein; structural genomic	98.45
2f06_A	144	Conserved hypothetical protein; structural genomic	98.28
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.27
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.19
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.99
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.93
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.87
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.79
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.76
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.74
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.64
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.63
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.63
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.48
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.47
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.47
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.44
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.43
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.42
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.39
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.29
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.19
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.15
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.13
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.99
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.9
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.77
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.73
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.58
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.54
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.43
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.37
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.23
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.06
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.89
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.57
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.54
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.52
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.52
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	95.36
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.61
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	92.81
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	91.34
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.11
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	91.09
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.76
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	90.6
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.32
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	90.05
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.72
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	87.53
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.82
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.78
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	86.63
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	85.67
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	83.25
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	82.74
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	82.2
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	81.61

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.79  E-value=2.3e-18  Score=152.66  Aligned_cols=158  Identities=16%  Similarity=0.097  Sum_probs=115.3

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC-c
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG-A  112 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~-~  112 (358)
                      ..++|+|+|+||||||++|+++|+.+||||++|++++..|.+.-.|.|..+..   ..+...+.|++.|........+ .
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeE
Confidence            46799999999999999999999999999999999986666655777764421   2223578899999754421100 1


Q ss_pred             ccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecC--CeeEEEEEEEeCCCCCCCCChHHHH
Q 018281          113 KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLS  190 (358)
Q Consensus       113 r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~--~~~~d~F~v~~~~~g~~~~~~~~~~  190 (358)
                      +..+..  . ......++|+|.|+|||||+++|+++|+++|+||.+++.+|.+  .+..+.|++.. ..+.+  +... +
T Consensus        81 ~~~~~~--~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~-~~~~~--~~~~-~  153 (195)
T 2nyi_A           81 SVAERH--V-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS-RVAFP--FPLY-Q  153 (195)
T ss_dssp             CC------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE-EEEEE--GGGH-H
T ss_pred             EEEeCC--c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE-EEEcC--CCcc-H
Confidence            100111  1 3344678999999999999999999999999999999999966  55667888776 33322  2344 7


Q ss_pred             HHHHHHHHHHc
Q 018281          191 LMEEQLKNILR  201 (358)
Q Consensus       191 ~L~~~L~~~L~  201 (358)
                      .|++.|.....
T Consensus       154 ~l~~~l~~~a~  164 (195)
T 2nyi_A          154 EVVTALSRVEE  164 (195)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78888886543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=4.1e-18  Score=151.08  Aligned_cols=160  Identities=13%  Similarity=0.108  Sum_probs=116.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCCC
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE  206 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~~  206 (358)
                      ..++|+|+|+|||||+++|+++|+++|+||.++++++..+.+.-.|.+..+  ..  ....+++.|++.|...+.+ .  
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~-~--   76 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQIS-T--   76 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEE-E--
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHh-c--
Confidence            467999999999999999999999999999999999977776668888762  21  1223445555555432211 0  


Q ss_pred             cchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHHHH
Q 018281          207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIV  286 (358)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~I~  286 (358)
                            .  +       ..++       +               .   .+    . ......++|+|.|+|||||+++|+
T Consensus        77 ------~--~-------~~~~-------~---------------~---~~----~-~~~~~~~iltv~g~DrpGiva~Vt  111 (195)
T 2nyi_A           77 ------R--R-------ASSV-------A---------------E---RH----V-SPDTREYELYVEGPDSEGIVEAVT  111 (195)
T ss_dssp             ------E--E-------CCCC---------------------------------C-CTTEEEEEEEEEEECCTTHHHHHH
T ss_pred             ------C--C-------eEEE-------E---------------e---CC----c-CCCCcEEEEEEEeCCCcCHHHHHH
Confidence                  0  0       0011       0               0   01    0 233467889999999999999999


Q ss_pred             HHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281          287 CTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (358)
Q Consensus       287 ~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  341 (358)
                      ++|+++|+||..++..|.+  +++.+.|+++...+.+  ++.. +.|+++|.....+
T Consensus       112 ~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a~~  165 (195)
T 2nyi_A          112 AVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVEEE  165 (195)
T ss_dssp             HHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHHHH
Confidence            9999999999999999998  7789999998766544  2334 7788887765544

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.74  E-value=4.5e-17  Score=143.92  Aligned_cols=160  Identities=13%  Similarity=0.169  Sum_probs=117.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCCC
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE  206 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~~  206 (358)
                      ..++|+|.|+||||++++|+++|+++|+||.++++++..+.+...|.+..+        ...++.|++.|...+.. .. 
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~~~-~~-   74 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLGQQ-HD-   74 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHHHH-HT-
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHHHh-cC-
Confidence            457899999999999999999999999999999999977877778888762        13567888888875522 11 


Q ss_pred             cchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHHHH
Q 018281          207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIV  286 (358)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~I~  286 (358)
                           +...+        ++..      +                   ++     +......++|+|.|+||||++++|+
T Consensus        75 -----~~~~~--------~~~~------~-------------------~~-----~~~~~~~~~l~v~~~D~~Gil~~v~  111 (192)
T 1u8s_A           75 -----LITMM--------KRTS------P-------------------HD-----HQTHAYTVEVYVESDDKLGLTEKFT  111 (192)
T ss_dssp             -----CEEEE--------EEEC------C-------------------CC-----CCCCSEEEEEEEEESCCTTHHHHHH
T ss_pred             -----CEEEE--------EeCC------C-------------------CC-----CccCCceEEEEEEeCCCccHHHHHH
Confidence                 11111        1110      0                   01     1333466789999999999999999


Q ss_pred             HHhhcCCeEEEEEEEEecCC----ceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281          287 CTLTDMQYVVFHAAISSDGP----HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (358)
Q Consensus       287 ~~l~~~~v~I~~a~i~T~g~----~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  341 (358)
                      ++|+++|+||..++..|.++    ++.+.|+++...+.+  ++...+.|+++|.....+
T Consensus       112 ~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~  168 (192)
T 1u8s_A          112 QFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTA  168 (192)
T ss_dssp             HHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHH
Confidence            99999999999999999985    689999998765433  223567888888765554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.70  E-value=1.6e-16  Score=140.37  Aligned_cols=155  Identities=16%  Similarity=0.207  Sum_probs=108.6

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCC---CCCC
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG---HITA  110 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~---~~~~  110 (358)
                      ..++|+|+|+||||+|++|+++|+.+|+||.++++++.+|.+.-.|.|..+.       ...+.|++.|....   ....
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence            3578999999999999999999999999999999999777777678886431       24455665554221   1111


Q ss_pred             Cc-ccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCC----eeEEEEEEEeCCCCCCCCC
Q 018281          111 GA-KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR----RIACVLYVNDDTTCRAVGD  185 (358)
Q Consensus       111 ~~-r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~----~~~d~F~v~~~~~g~~~~~  185 (358)
                      .. +...+.   .......++|+|.|+||||++++|+++|+++|+||.+++..|.+.    +..+.|+++. ..+.+  +
T Consensus        78 ~~~~~~~~~---~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~-~~~~~--~  151 (192)
T 1u8s_A           78 MMKRTSPHD---HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI-SARVD--S  151 (192)
T ss_dssp             EEEEECCCC---CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE-EEEEC--T
T ss_pred             EEEeCCCCC---CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE-EEeCC--C
Confidence            00 111110   123346789999999999999999999999999999999999763    4667777766 22222  1


Q ss_pred             hHHHHHHHHHHHHHHc
Q 018281          186 QTRLSLMEEQLKNILR  201 (358)
Q Consensus       186 ~~~~~~L~~~L~~~L~  201 (358)
                      ....+.|++.|.....
T Consensus       152 ~~~~~~l~~~l~~~~~  167 (192)
T 1u8s_A          152 GCNLMQLQEEFDALCT  167 (192)
T ss_dssp             TSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            2345778888876543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.93  E-value=2.5e-08  Score=97.59  Aligned_cols=151  Identities=13%  Similarity=0.085  Sum_probs=100.6

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC---CCCCCCC
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG---PKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~---~~~~~~~  110 (358)
                      ..++|+|.|+|||||.+.|+++|+.+||||.+.+.++.+|++.-...+.-+... ..    .+.|++.|.   +.+....
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~----~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-AD----GPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HT----SHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CC----HHHHHHHHHHHHHHcCeEE
Confidence            467899999999999999999999999999999999988887655555422111 01    134444443   2222211


Q ss_pred             Ccc-cCCceeeeecCCCCeEEEEEEeCC-cccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHH
Q 018281          111 GAK-TWPSKQVGVHSVGDHTAIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR  188 (358)
Q Consensus       111 ~~r-~~~~~~v~~~~~~~~t~v~V~~~D-rpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~  188 (358)
                      ..+ ......   .....+..+++.+++ +||++.+|+.++.++|+||...+..+......-.|.+..+ .    .+   
T Consensus        86 ~~~~~~~~~~---~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~-~----~~---  154 (415)
T 3p96_A           86 SIERSDDVPI---IREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP-P----GA---  154 (415)
T ss_dssp             EEEECSSSCS---SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC-T----TC---
T ss_pred             EEEECCcccc---cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC-C----CC---
Confidence            111 001100   133467899999999 9999999999999999999988887744444444666552 1    11   


Q ss_pred             HHHHHHHHHHHH
Q 018281          189 LSLMEEQLKNIL  200 (358)
Q Consensus       189 ~~~L~~~L~~~L  200 (358)
                      .+.++..|.+.+
T Consensus       155 ~~~l~~~l~~l~  166 (415)
T 3p96_A          155 DEALRTALNRVS  166 (415)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            245666666544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.87  E-value=1.6e-07  Score=91.86  Aligned_cols=157  Identities=14%  Similarity=0.065  Sum_probs=104.5

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCC
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDD  205 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~  205 (358)
                      ...++|+|.|+||||+++.|+++|+++|+||.+...++.+|.+.-...+..+ ..     ....+.|++.|... ..+..
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~-~~-----~~~~~~l~~~l~~~-~~~~~   82 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP-AD-----VADGPALRHDVEAA-IRKVG   82 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC-HH-----HHTSHHHHHHHHHH-HHHTT
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec-CC-----cCCHHHHHHHHHHH-HHHcC
Confidence            3567999999999999999999999999999999999988887666666552 11     01236688887753 33232


Q ss_pred             CcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCC-cchhHHH
Q 018281          206 EDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD-RAKLMFD  284 (358)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~D-rpGLL~~  284 (358)
                            +...+        .+.          +.             ...+       .......+.+.++| +||++.+
T Consensus        83 ------~~~~~--------~~~----------~~-------------~~~~-------~~~~~~~~~llg~~~~~~~~~~  118 (415)
T 3p96_A           83 ------LDVSI--------ERS----------DD-------------VPII-------REPSTHTIFVLGRPITAAAFGA  118 (415)
T ss_dssp             ------CEEEE--------EEC----------SS-------------SCSS-------CCCCSEEEEEEESSCCHHHHHH
T ss_pred             ------eEEEE--------EEC----------Cc-------------cccc-------CCCCcEEEEEEeCCCCHHHHHH
Confidence                  12111        000          00             0000       11244569999999 9999999


Q ss_pred             HHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          285 IVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       285 I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      |+.+|.++|+||.....-+......-.|++...   +    ...++++.+|.....
T Consensus       119 i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~---~----~~~~~l~~~l~~l~~  167 (415)
T 3p96_A          119 VAREVAALGVNIDLIRGVSDYPVIGLELRVSVP---P----GADEALRTALNRVSS  167 (415)
T ss_dssp             HHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC---T----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccceeeccCCCceEEEEEeeCC---C----CCHHHHHHHHHHHhh
Confidence            999999999999998877744444444777532   2    124556666555443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.45  E-value=3.5e-06  Score=70.13  Aligned_cols=109  Identities=20%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r~  114 (358)
                      ..|+|..+|+||.++++++.|++.|+||..-.+.. .+.. +-.|.+.        +.   +..++.|... ...     
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~-~~~~~~~--------d~---~~a~~~L~~~-G~~-----   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFG-ILRGIVS--------DP---DKAYKALKDN-HFA-----   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCE-EEEEEES--------CH---HHHHHHHHHT-TCC-----
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCC-EEEEEeC--------CH---HHHHHHHHHc-CCe-----
Confidence            57889999999999999999999999999887764 3321 2224321        11   2223333321 110     


Q ss_pred             CCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEE
Q 018281          115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVL  172 (358)
Q Consensus       115 ~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F  172 (358)
                         .       ....++.+..+|+||.+++++++|++.|+||.....+..++...-.|
T Consensus        69 ---v-------~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           69 ---V-------NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             ---E-------EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             ---E-------eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence               0       01246777889999999999999999999998766653233333333

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.28  E-value=2.3e-05  Score=65.03  Aligned_cols=111  Identities=15%  Similarity=0.100  Sum_probs=72.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCCCCCc
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDED  207 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~~~~~  207 (358)
                      ...++|..+|+||.++++++.|++.|+||....+....+...  +.++..       +++   ..++.|.+.  + ..  
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~--~~~~~~-------d~~---~a~~~L~~~--G-~~--   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGIVS-------DPD---KAYKALKDN--H-FA--   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEES-------CHH---HHHHHHHHT--T-CC--
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE--EEEEeC-------CHH---HHHHHHHHc--C-Ce--
Confidence            357889999999999999999999999999877753222111  222221       222   233333321  1 00  


Q ss_pred             chhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCCcchhHHHHHH
Q 018281          208 SEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVC  287 (358)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~DrpGLL~~I~~  287 (358)
                                         .       .                               .+.++-+..+|+||.+++|++
T Consensus        69 -------------------v-------~-------------------------------~~svv~v~~~d~pGvla~i~~   91 (144)
T 2f06_A           69 -------------------V-------N-------------------------------ITDVVGISCPNVPGALAKVLG   91 (144)
T ss_dssp             -------------------E-------E-------------------------------EEEEEEEEEESSTTHHHHHHH
T ss_pred             -------------------E-------e-------------------------------eeeEEEEEeCCCCcHHHHHHH
Confidence                               0       0                               113577788999999999999


Q ss_pred             HhhcCCeEEEEEEEEecCCceEEEE
Q 018281          288 TLTDMQYVVFHAAISSDGPHASQEY  312 (358)
Q Consensus       288 ~l~~~~v~I~~a~i~T~g~~a~d~F  312 (358)
                      +|++.|+||.+......+.++.=.|
T Consensus        92 ~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           92 FLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             HHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             HHHHCCCCEEEEEEEccCCcEEEEE
Confidence            9999999998766553334444333

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.27  E-value=5.3e-06  Score=63.23  Aligned_cols=67  Identities=15%  Similarity=0.345  Sum_probs=53.3

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      ..+.++|.++||||++++|+++|+++|+||.+....+.++.+.-.+.+..+ +      ...++.|.+.|.+..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~-~------~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-E------KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-S------CCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC-C------CCCHHHHHHHHHHHH
Confidence            457899999999999999999999999999999998876777777777552 1      123567777777543

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.19  E-value=1.3e-05  Score=61.02  Aligned_cols=50  Identities=20%  Similarity=0.213  Sum_probs=43.6

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEe
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID   83 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~   83 (358)
                      ....|+|.|+||||++++|+++|+.+|+||.+....+.+|.+.-.+.+.-
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~   53 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS   53 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe
Confidence            35689999999999999999999999999999999987787776666643

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.99  E-value=3.4e-05  Score=58.01  Aligned_cols=48  Identities=6%  Similarity=0.079  Sum_probs=40.5

Q ss_pred             eeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEE
Q 018281          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR  315 (358)
Q Consensus       268 ~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~  315 (358)
                      .+.|.|.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~   52 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF   52 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence            356899999999999999999999999999999988666555555554

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.93  E-value=5.4e-05  Score=56.86  Aligned_cols=50  Identities=18%  Similarity=0.381  Sum_probs=41.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      -.+.+.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+..
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~   53 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV   53 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence            35678999999999999999999999999999999886555555565555

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.87  E-value=0.00021  Score=66.43  Aligned_cols=115  Identities=13%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC---CCCCC
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG---PKGHI  108 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~---~~~~~  108 (358)
                      ..+.|+|.|+|||||.++|++.|+++||||.+.+.++  .+|++.-...+.-+.+. .+    .+.|++.|.   ..+..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~----~~~L~~~f~~la~~~~m   79 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-IP----LASLRTGFGVIAAKFTM   79 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-CC----HHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-CC----HHHHHHHHHHHHHHcCC
Confidence            3478999999999999999999999999999999986  47877655555433321 11    344555443   22221


Q ss_pred             CCCcccCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe
Q 018281          109 TAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT  163 (358)
Q Consensus       109 ~~~~r~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T  163 (358)
                                .+..........|-|...-+-.-|.+|......-.+++.-+-+.+
T Consensus        80 ----------~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           80 ----------GWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             ----------EEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             ----------EEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence                      112221222334444444445567777777766666554444444

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.79  E-value=0.00031  Score=59.88  Aligned_cols=110  Identities=14%  Similarity=0.180  Sum_probs=75.2

Q ss_pred             CCeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        33 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      .+...|+|. .+|+||.+++|..+|+.+|+||.--.... .+|...-+|.|...+.     +...+.|++ +...+... 
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~~-   95 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGAA-   95 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTCS-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCCc-
Confidence            366788888 59999999999999999999998765542 3465555677742111     122233332 32222210 


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeCC---cccHHHHHHHHHHhCCCcEEEE
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~D---rpGLL~~I~~~L~~~g~nI~~A  159 (358)
                              .+  ....+...+.|.+.+   +||+++++..+|.+.|+||...
T Consensus        96 --------~i--~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           96 --------SI--DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             --------EE--EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             --------eE--EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence                    11  223477899999887   9999999999999999999873

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.76  E-value=0.0006  Score=63.22  Aligned_cols=48  Identities=15%  Similarity=0.133  Sum_probs=41.2

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV   81 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V   81 (358)
                      ..+.|+|.|+|||||.++|++.|+++|+||.+.+.++  ..|++.-...+
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   56 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF   56 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEE
Confidence            3478999999999999999999999999999999997  46777644444

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.74  E-value=0.0002  Score=66.85  Aligned_cols=49  Identities=24%  Similarity=0.367  Sum_probs=42.0

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEee--CCEEEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI   82 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~V~   82 (358)
                      ....++|.|+|||||.++|++.|+++||||.+++.++.  +|++.-...+.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~   71 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR   71 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence            45789999999999999999999999999999999984  78776544443

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.64  E-value=0.0016  Score=55.41  Aligned_cols=112  Identities=14%  Similarity=0.078  Sum_probs=73.6

Q ss_pred             CCCeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          125 VGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       125 ~~~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      ..+...|+|. .+|+||.+++|..+|+++|+||....... .+|...-.|.|...       +.   ++..+.|.+ +..
T Consensus        22 ~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~-------~~---~~a~~~l~~-~~~   90 (167)
T 2re1_A           22 DKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG-------DY---KQTLEILSE-RQD   90 (167)
T ss_dssp             ECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG-------GH---HHHHHHHHH-SST
T ss_pred             cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech-------HH---HHHHHHHHH-HHH
Confidence            3466788888 49999999999999999999998655432 23433444555431       11   223333333 111


Q ss_pred             CCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCC---cc
Q 018281          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD---RA  279 (358)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~D---rp  279 (358)
                      +..                                                . ..|.+.+    +.+.+.|.+.+   +|
T Consensus        91 ~l~------------------------------------------------~-~~i~~~~----~~a~vsvvG~~m~~~~  117 (167)
T 2re1_A           91 SIG------------------------------------------------A-ASIDGDD----TVCKVSAVGLGMRSHV  117 (167)
T ss_dssp             TTT------------------------------------------------C-SEEEEES----SEEEEEEECSSCTTCC
T ss_pred             HcC------------------------------------------------C-ceEEecC----CEEEEEEECCCcCCCc
Confidence            111                                                0 1233322    56789999877   99


Q ss_pred             hhHHHHHHHhhcCCeEEEEEE
Q 018281          280 KLMFDIVCTLTDMQYVVFHAA  300 (358)
Q Consensus       280 GLL~~I~~~l~~~~v~I~~a~  300 (358)
                      |+++++.++|.+.|++|.+..
T Consensus       118 Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A          118 GVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             CHHHHHHHHHHHTTCCCCEEE
T ss_pred             CHHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999999943

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.63  E-value=0.0012  Score=61.18  Aligned_cols=48  Identities=25%  Similarity=0.240  Sum_probs=41.3

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV   81 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V   81 (358)
                      ..+.+++.|+|||||.++|++.|+++||||.+.+.++  .+|++.-...+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   55 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV   55 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE
Confidence            4578999999999999999999999999999999986  47777644433

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.63  E-value=0.00081  Score=62.51  Aligned_cols=48  Identities=13%  Similarity=0.096  Sum_probs=41.2

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV   81 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V   81 (358)
                      ..+.+++.|+|||||.++|++.|+++|+||.+.+.++  ..|++.-...+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   58 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF   58 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE
Confidence            4578999999999999999999999999999999997  46777644433

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.48  E-value=0.00043  Score=64.29  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ..++++|.|+||||+++.|+++|+++|+||.+...++  ..|.+.-...+..+ .. ..    ..+.|++.|...
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~-~~----~~~~L~~~f~~l   73 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA-AK-VI----PLASLRTGFGVI   73 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES-SC-CC----CHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC-CC-CC----CHHHHHHHHHHH
Confidence            4578999999999999999999999999999999975  56666555555442 11 12    246688877653

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.47  E-value=0.00049  Score=63.83  Aligned_cols=67  Identities=10%  Similarity=0.028  Sum_probs=50.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      ..++++|.|+||||+++.|+++|+++|+||.+...++  ..+++.-...+..+ .  ..    ..+.|++.|....
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~--~~----~~~~L~~~f~~la   75 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP-D--DF----DEAGFRAGLAERS   75 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-S--SC----CHHHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC-C--CC----CHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999986  45665444444331 1  12    2467888887543

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.47  E-value=0.0013  Score=56.51  Aligned_cols=110  Identities=18%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CCeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEee---CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC
Q 018281           33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (358)
Q Consensus        33 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~  108 (358)
                      .+.+.|+|. .+|+||.+++|...|++.|+||.--...+.   +|..--.|.+...         ..++..+.|..... 
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~-   82 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQV-   82 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTT-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHH-
Confidence            467788884 699999999999999999999986655542   3333334776531         11223334433111 


Q ss_pred             CCCcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEE
Q 018281          109 TAGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       109 ~~~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A  159 (358)
                      ..    ... .+  ....+...|.|.|.   ++||+++++..+|++.|+||...
T Consensus        83 ~~----~~~-~v--~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           83 QG----NWT-NV--LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             TT----TCS-EE--EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             hc----CCC-eE--EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            00    011 11  22346778888876   89999999999999999999873

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.44  E-value=0.00046  Score=64.05  Aligned_cols=66  Identities=20%  Similarity=0.313  Sum_probs=48.2

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ...+++++.|+||||+++.|+++|+++|+||.++..++  ..|++.-...+..+  +  .    .++.|++.|...
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~--~----~~~~L~~~f~~l   72 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP--V--A----GVNDFNSAFGKV   72 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--C---------CHHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC--C--C----CHHHHHHHHHHH
Confidence            34679999999999999999999999999999999985  45665444433331  1  1    134677777653

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.43  E-value=0.00046  Score=64.44  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=49.5

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ...++++|.|+||||+++.|+++|+++|+||.++..++.  .|++.....+..+  ....    ..+.|++.|..
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD--TLPF----DLDGFREAFTP   88 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG--GSSS----CHHHHHHHHHH
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC--CCCC----CHHHHHHHHHH
Confidence            355799999999999999999999999999999999873  5665544444331  1111    24667777764

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.42  E-value=0.00052  Score=63.82  Aligned_cols=69  Identities=13%  Similarity=0.204  Sum_probs=48.9

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ...+++++.|+||||++++|+++|+++|+||.++..++  ..|++.-...+..+......    ..+.|++.|..
T Consensus         8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~   78 (292)
T 3lou_A            8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEP   78 (292)
T ss_dssp             CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHH
T ss_pred             CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHH
Confidence            34679999999999999999999999999999999986  55665444444331001011    24667777764

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.39  E-value=0.0091  Score=51.17  Aligned_cols=141  Identities=11%  Similarity=0.125  Sum_probs=87.1

Q ss_pred             CCCCeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEec---CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          124 SVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       124 ~~~~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~---~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ...+.+.|+|. .+|+||.+++|...|++.|+||......+.   ++...-.|.+..          ...++..+.|.+ 
T Consensus        11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-   79 (178)
T 2dtj_A           11 TDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-   79 (178)
T ss_dssp             EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-
T ss_pred             ecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-
Confidence            34466777874 689999999999999999999986655543   333333355544          112222233322 


Q ss_pred             HcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeC---
Q 018281          200 LRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---  276 (358)
Q Consensus       200 L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~---  276 (358)
                      +.....                                                 ...|.+.+    +.+.|.|.+.   
T Consensus        80 ~~~~~~-------------------------------------------------~~~v~~~~----~~a~VsvVG~gm~  106 (178)
T 2dtj_A           80 LQVQGN-------------------------------------------------WTNVLYDD----QVGKVSLVGAGMK  106 (178)
T ss_dssp             TTTTTT-------------------------------------------------CSEEEEES----CEEEEEEEEECCT
T ss_pred             HHHhcC-------------------------------------------------CCeEEEeC----CeEEEEEEcCCcc
Confidence            111000                                                 01233332    5667888875   


Q ss_pred             CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281          277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (358)
Q Consensus       277 DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  341 (358)
                      ++||+++++.++|++.||||.+..  |- + ..-.|.|..         +..++..++|.+.+..
T Consensus       107 ~~~Gv~arif~aLa~~~InI~~is--tS-e-~~Is~vV~~---------~d~~~Av~~Lh~~F~l  158 (178)
T 2dtj_A          107 SHPGVTAEFMEALRDVNVNIELIS--TS-E-IRISVLIRE---------DDLDAAARALHEQFQL  158 (178)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCEEE--EE-T-TEEEEEEEG---------GGHHHHHHHHHHHHTC
T ss_pred             cCccHHHHHHHHHHHCCCCEEEEE--cC-C-CeEEEEEeH---------HHHHHHHHHHHHHHcc
Confidence            899999999999999999999854  32 2 333455532         3455555666666643

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.29  E-value=0.021  Score=58.20  Aligned_cols=224  Identities=15%  Similarity=0.135  Sum_probs=133.2

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281           33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (358)
Q Consensus        33 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (358)
                      .+...|.|++.   .+||+.+++..+|+..|+||.--.  +. ..- -+|.|...+.     +...+.|.+.+.... .+
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~-Is~vI~~~d~-----~~Av~aLh~~f~~~~-t~  422 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVK-VSCVIDQRDA-----DRAIAALSNAFGVTL-SP  422 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSE-EEEEEEGGGH-----HHHHHHHHHHTTCCB-CC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCE-EEEEEcHHHH-----HHHHHHHHHhhcccC-CC
Confidence            46789999975   799999999999999999997554  33 322 2355543211     245666777765321 11


Q ss_pred             CCcccC-C-ceee-eecCCCCeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEec----CC--eeEEEEEEEeCCC
Q 018281          110 AGAKTW-P-SKQV-GVHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH----NR--RIACVLYVNDDTT  179 (358)
Q Consensus       110 ~~~r~~-~-~~~v-~~~~~~~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~----~~--~~~d~F~v~~~~~  179 (358)
                      ...+.. . ...| ......+...|+|. .+|+||+.++|.+.|+++|+||..-.....    +|  ...-.|.+..   
T Consensus       423 ~~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---  499 (600)
T 3l76_A          423 PKNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---  499 (600)
T ss_dssp             CCCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---
T ss_pred             ccccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---
Confidence            000000 0 0011 12234466677765 589999999999999999999964444321    24  2333455544   


Q ss_pred             CCCCCChHHHHHHHHHHHHHHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEE
Q 018281          180 CRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEIT  259 (358)
Q Consensus       180 g~~~~~~~~~~~L~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  259 (358)
                             +.++...+.|.+ +.....                                                 ..+|.
T Consensus       500 -------~d~~~a~~~l~~-~~~~~~-------------------------------------------------~~~v~  522 (600)
T 3l76_A          500 -------GDSSQAEAILQP-LIKDWL-------------------------------------------------DAAIV  522 (600)
T ss_dssp             -------HHHHHHHHHHHH-HTTTST-------------------------------------------------TCEEE
T ss_pred             -------HHHHHHHHHHHH-HHHhcC-------------------------------------------------CceEE
Confidence                   233333333333 221111                                                 01244


Q ss_pred             EecCCCCceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          260 VERLEDKGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       260 v~n~~~~~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      +++    +...|.|.+   ..+||+.+++-++|++.||||.+..  |- + ..=.+.|..         +..++.-++|.
T Consensus       523 ~~~----~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tS-E-i~Is~vV~~---------~~~~~Av~alh  585 (600)
T 3l76_A          523 VNK----AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TS-E-IKISCVVPQ---------DRGVDALKAAH  585 (600)
T ss_dssp             EEC----CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--EC-S-SEEEEEEEG---------GGHHHHHHHHH
T ss_pred             EeC----CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cC-C-ceEEEEEeH---------HHHHHHHHHHH
Confidence            433    567788876   6999999999999999999998877  21 1 122344442         34455556777


Q ss_pred             HHHhhcc
Q 018281          337 AAIRRRV  343 (358)
Q Consensus       337 ~~l~~~~  343 (358)
                      .++.-..
T Consensus       586 ~~F~l~~  592 (600)
T 3l76_A          586 SAFNLAG  592 (600)
T ss_dssp             HHTTTTS
T ss_pred             HHhCCCC
Confidence            7765433

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.19  E-value=0.064  Score=54.67  Aligned_cols=205  Identities=13%  Similarity=0.138  Sum_probs=119.2

Q ss_pred             eEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEe-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 018281           35 CTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (358)
Q Consensus        35 ~~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  112 (358)
                      .+.|++. .++.||..++|...|+.+|+||.--.... .+|..--+|.|...+-     +...+.++ .+...+..... 
T Consensus       270 ~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~-~~~~el~~~~~-  342 (600)
T 3l76_A          270 QAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTS-AIAPALRSYPE-  342 (600)
T ss_dssp             CEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHH-HHGGGGSSSTT-
T ss_pred             EEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHH-HHHHHhhcccc-
Confidence            3455555 47999999999999999999995333222 4565555677743211     11222222 23322210000 


Q ss_pred             ccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHH
Q 018281          113 KTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL  189 (358)
Q Consensus       113 r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~  189 (358)
                       ......|  ....+...|.|.|.   .+||+.+++..+|.+.|+||....  |-  ...-.|.|..          +..
T Consensus       343 -~~~~~~v--~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~----------~d~  405 (600)
T 3l76_A          343 -ADQEAEI--IVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQ----------RDA  405 (600)
T ss_dssp             -CSSSSEE--EEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEG----------GGH
T ss_pred             -ccCccee--EecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcH----------HHH
Confidence             0001112  23347788999976   799999999999999999997654  22  2234455544          222


Q ss_pred             HHHHHHHHHHHcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCcee
Q 018281          190 SLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYS  269 (358)
Q Consensus       190 ~~L~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t  269 (358)
                      ++..+.|++.+.....       +. .        .+.       ...             ....-+-|..+.    +.+
T Consensus       406 ~~Av~aLh~~f~~~~t-------~~-~--------~~~-------~~~-------------~~~~v~Gia~~~----~~a  445 (600)
T 3l76_A          406 DRAIAALSNAFGVTLS-------PP-K--------NQT-------DTS-------------HLPAVRGVALDQ----DQA  445 (600)
T ss_dssp             HHHHHHHHHHTTCCBC-------CC-C--------CCC-------C----------------CCSCCEEEEEC----SEE
T ss_pred             HHHHHHHHHhhcccCC-------Cc-c--------ccc-------ccc-------------ccCceEEEEeeC----CEE
Confidence            3444556665532211       00 0        000       000             011223455554    445


Q ss_pred             EEEEE-eCCcchhHHHHHHHhhcCCeEEEEEEEEe
Q 018281          270 VVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISS  303 (358)
Q Consensus       270 ~l~v~-~~DrpGLL~~I~~~l~~~~v~I~~a~i~T  303 (358)
                      .|.|. .+|+||+.++|-..|++.||+|....-+.
T Consensus       446 ~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~  480 (600)
T 3l76_A          446 QIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQ  480 (600)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecc
Confidence            66664 59999999999999999999998776554

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.15  E-value=0.0025  Score=54.10  Aligned_cols=109  Identities=14%  Similarity=0.207  Sum_probs=73.6

Q ss_pred             CCeEEEEEEe-cCCcchHHHHHHHHhhCCceEEEEEEEee---CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC
Q 018281           33 PECTVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (358)
Q Consensus        33 ~~~~~v~v~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~  108 (358)
                      .+.+.|+|.+ +|+||.++++..+|++.|+||.--.....   .|..--+|.|...+...  ..+.++++...+.  +  
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~--a~~~L~~~~~~~~--~--   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQE--ALEALEPVLAEIG--G--   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHH--HHHHHHHHHHHHC--C--
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHH--HHHHHHHHHHHhC--C--
Confidence            4678888886 89999999999999999999986544322   34455567775321110  0012222333332  1  


Q ss_pred             CCCcccCCceeeeecCCCCeEEEEEEeCC---cccHHHHHHHHHHhCCCcEEEE
Q 018281          109 TAGAKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       109 ~~~~r~~~~~~v~~~~~~~~t~v~V~~~D---rpGLL~~I~~~L~~~g~nI~~A  159 (358)
                      .          +  ....+...+.|.|.+   +||.++++..+|++.|+||...
T Consensus        88 ~----------v--~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 E----------A--ILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             E----------E--EEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             c----------E--EEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence            1          1  123467789999876   9999999999999999999543

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.13  E-value=0.0017  Score=55.08  Aligned_cols=63  Identities=16%  Similarity=0.263  Sum_probs=50.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-c-CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-H-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~-~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ...+.|.+.|+||+|++|+++|++.|+||.+..+.+ . .+...-+|.+..        +...++.|.++|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcC
Confidence            357899999999999999999999999999999875 4 356666666654        24567778777775

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.00  E-value=0.023  Score=47.94  Aligned_cols=137  Identities=18%  Similarity=0.155  Sum_probs=84.2

Q ss_pred             CCCeEEEEEEe-CCcccHHHHHHHHHHhCCCcEEEEEEEec---CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHH
Q 018281          125 VGDHTAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (358)
Q Consensus       125 ~~~~t~v~V~~-~DrpGLL~~I~~~L~~~g~nI~~A~i~T~---~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L  200 (358)
                      ..+...|+|.+ +|+||.++++.++|++.|+||........   .|...-.|.|...       +.   ++..+.|.+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-------d~---~~a~~~L~~~~   82 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-------FA---QEALEALEPVL   82 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-------GH---HHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-------HH---HHHHHHHHHHH
Confidence            45677788876 89999999999999999999986443321   2344455666541       11   22223333211


Q ss_pred             cCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeCC---
Q 018281          201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD---  277 (358)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~D---  277 (358)
                       .                       .+                       .  .  .|.+++    +.+.+.|.+.+   
T Consensus        83 -~-----------------------~~-----------------------~--~--~v~~~~----~~a~vsvVG~gm~~  107 (167)
T 2dt9_A           83 -A-----------------------EI-----------------------G--G--EAILRP----DIAKVSIVGVGLAS  107 (167)
T ss_dssp             -H-----------------------HH-----------------------C--C--EEEEEC----SEEEEEEEESSGGG
T ss_pred             -H-----------------------Hh-----------------------C--C--cEEEeC----CEEEEEEECCCccc
Confidence             0                       00                       0  0  233322    56788898876   


Q ss_pred             cchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          278 RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       278 rpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      +||+++++.++|.+.|+||....  |- +. .=.|.|..         +..++.-++|..++
T Consensus       108 ~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~~---------~d~~~Av~~Lh~~f  156 (167)
T 2dt9_A          108 TPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIPA---------EYAEAALRAVHQAF  156 (167)
T ss_dssp             STHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEG---------GGHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEeH---------HHHHHHHHHHHHHH
Confidence            99999999999999999996653  32 32 44455543         23444445555444

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.99  E-value=0.0024  Score=54.25  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-c-CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-H-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~-~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ...+.|...|+||+|++|+++|++.|+||.+..+.. . .+...-+|.+..        +...++.|.++|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCC
Confidence            468899999999999999999999999999999875 4 466666777765        235667777777753

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.90  E-value=0.0029  Score=53.73  Aligned_cols=63  Identities=11%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC--CceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG--PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      .|.|.+.||||+|++|+.+|++.|+||.+..+.+..  +...=+|-+.   |.    +..+++|.+.|.+..
T Consensus         5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d----~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD----EKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC----HHHHHHHHHHHHHST
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc----HHHHHHHHHHHcCCC
Confidence            599999999999999999999999999999997543  3344455554   21    467788887777443

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.77  E-value=0.011  Score=50.99  Aligned_cols=138  Identities=20%  Similarity=0.254  Sum_probs=85.5

Q ss_pred             CCeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEe-e--CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC
Q 018281           33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-D--GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (358)
Q Consensus        33 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~  108 (358)
                      .+.+.|+|. .+|+||.+++|...|+..|+||.--.... .  +|..--+|+|...+...  ..+.++.+...|.    .
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~----~   87 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIG----F   87 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHC----C
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcC----c
Confidence            356677765 69999999999999999999997554432 2  56655668775321110  0112222222231    1


Q ss_pred             CCCcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCC
Q 018281          109 TAGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGD  185 (358)
Q Consensus       109 ~~~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~  185 (358)
                               ..+  ....+...|.|.|.   ++||+.+++..+|.+.|+||....  |-  ...-.|.|..         
T Consensus        88 ---------~~v--~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tS--ei~Is~vV~~---------  143 (181)
T 3s1t_A           88 ---------SQL--LYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRD---------  143 (181)
T ss_dssp             ---------SEE--EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEG---------
T ss_pred             ---------ceE--EEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEeH---------
Confidence                     011  12246678888866   899999999999999999998765  21  2233455544         


Q ss_pred             hHHHHHHHHHHHHHHc
Q 018281          186 QTRLSLMEEQLKNILR  201 (358)
Q Consensus       186 ~~~~~~L~~~L~~~L~  201 (358)
                       +..++.-+.|++.+.
T Consensus       144 -~d~~~Av~aLH~~f~  158 (181)
T 3s1t_A          144 -TELDKAVVALHEAFG  158 (181)
T ss_dssp             -GGHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHc
Confidence             222344456666663

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.73  E-value=0.0041  Score=52.61  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=43.2

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~  336 (358)
                      .|+|.|.||+|||.+|+++|.+.++||..+.+.+.|.     +|+...    ..+......|...+.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~----~~~~~~~~~L~~~l~   59 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA----ELEFESFSSLMAEIR   59 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC----CCCHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE----eCCHHHHHHHHHHHH
Confidence            3889999999999999999999999999999987643     555433    122345555555544

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.58  E-value=0.1  Score=45.15  Aligned_cols=111  Identities=21%  Similarity=0.200  Sum_probs=72.5

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-ee-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 018281           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (358)
Q Consensus        35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  112 (358)
                      ...|.|...|+||.|++|+++|+..|+||.+-.+. |. .|..--++.|...       +..++.|.+.|......-.-.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidVikV~  101 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEVVKVT  101 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCceEEEE
Confidence            46899999999999999999999999999998886 53 4666656666532       246788888887543221000


Q ss_pred             ccCC--ceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEE
Q 018281          113 KTWP--SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       113 r~~~--~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A  159 (358)
                      ....  ...|    ......+.|.+...   -..|.++....+.+|++.
T Consensus       102 dl~~~~~~~v----~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv  143 (193)
T 2fgc_A          102 PIDPLPENRV----EREMALIKVRFDED---KQEIFQLVEIFRGKIIDV  143 (193)
T ss_dssp             ECCSSGGGEE----EEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEE
T ss_pred             EecCCCCccc----eeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEE
Confidence            0001  1111    11334566665432   677777777778777764

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.54  E-value=0.0077  Score=51.09  Aligned_cols=111  Identities=12%  Similarity=0.053  Sum_probs=69.0

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-e-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK  113 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~r  113 (358)
                      ..|.|...|+||+|++|+++|+..|+||.+..+.. . .|..--+|.|..   .    +..++.|.+.|......-.-.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~---d----~~~leql~kQL~Kl~dV~~V~~   77 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG---P----DEIVEQITKQLNKLIEVVKLID   77 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE---C----HHHHHHHHHHHHHSTTEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec---c----HHHHHHHHHHhcCCCCEEEEEE
Confidence            57899999999999999999999999999999974 4 577766666742   1    3566777777764322110011


Q ss_pred             cCCceeeeecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEE
Q 018281          114 TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       114 ~~~~~~v~~~~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A  159 (358)
                      ......|    ......+.|.+..  .--..|.+.....+.+|++.
T Consensus        78 ~~~~~~v----~rEl~liKv~~~~--~~r~~i~~~~~~fra~ivdv  117 (165)
T 2pc6_A           78 LSSEGYV----ERELMLVKVRAVG--KDREEMKRLADIFRGNIIDV  117 (165)
T ss_dssp             GGGSCEE----EEEEEEEEEECCT--HHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCccee----eeEEEEEEEeCCc--ccHHHHHHHHHHcCCEEEEE
Confidence            1111111    1123345555532  23355666666777777754

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.43  E-value=0.011  Score=51.19  Aligned_cols=63  Identities=17%  Similarity=0.380  Sum_probs=48.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEE-ecC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~-T~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ...++|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.+..+        ...++.|.++|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcC
Confidence            56899999999999999999999999999998886 444 556666777651        1345666666654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.37  E-value=0.15  Score=43.71  Aligned_cols=139  Identities=10%  Similarity=0.124  Sum_probs=84.8

Q ss_pred             CCeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEe-c--CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHc
Q 018281          126 GDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-H--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (358)
Q Consensus       126 ~~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~--~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~  201 (358)
                      .+.+.|+|. .+|+||.+++|..+|+++|+||..-.... .  .|...-.|.+...       +.+   ...+.|.+.. 
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-------~~~---~a~~~L~~~~-   82 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------VGP---AAVEKLDSLR-   82 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-------THH---HHHHHHHHTH-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-------HHH---HHHHHHHHHH-
Confidence            355556554 67999999999999999999997544332 2  4555566777551       112   2222222210 


Q ss_pred             CCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeC---Cc
Q 018281          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DR  278 (358)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~---Dr  278 (358)
                      .                       .+        .                  ...|.+++    +...+.|.+.   ++
T Consensus        83 ~-----------------------el--------~------------------~~~v~~~~----~va~VsvVG~gm~~~  109 (181)
T 3s1t_A           83 N-----------------------EI--------G------------------FSQLLYDD----HIGKVSLIGAGMRSH  109 (181)
T ss_dssp             H-----------------------HH--------C------------------CSEEEEES----CEEEEEEEEECCTTC
T ss_pred             H-----------------------hc--------C------------------cceEEEeC----CEEEEEEEecccccC
Confidence            0                       00        0                  01233332    5567887765   89


Q ss_pred             chhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281          279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (358)
Q Consensus       279 pGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  341 (358)
                      ||+.+++.++|++.||||.+..  |-  ...=.|.|..         +..++.-++|..++..
T Consensus       110 ~Gvaa~~f~aLa~~~InI~~Is--tS--ei~Is~vV~~---------~d~~~Av~aLH~~f~l  159 (181)
T 3s1t_A          110 PGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRD---------TELDKAVVALHEAFGL  159 (181)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEG---------GGHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEeH---------HHHHHHHHHHHHHHcC
Confidence            9999999999999999999877  22  2223355543         3444555666666643

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.23  E-value=0.077  Score=51.66  Aligned_cols=109  Identities=21%  Similarity=0.285  Sum_probs=73.9

Q ss_pred             CeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEee---CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 018281           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (358)
Q Consensus        34 ~~~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (358)
                      +.+.|+|. .+|+||.+++|...|++.|+||.--.+.|.   +|...-+|.|...  .   .+...+.|++ +...+...
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~--~---~~~a~~~l~~-~~~~~~~~  336 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS--D---GRRAMEILKK-LQVQGNWT  336 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT--T---HHHHHHHHHH-HHTTTTCS
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech--h---HHHHHHHHHH-HHHHcCCc
Confidence            44566777 699999999999999999999986655443   4545556777531  1   1123334443 33333211


Q ss_pred             CCcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEE
Q 018281          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAA  159 (358)
Q Consensus       110 ~~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A  159 (358)
                               .+  ....+...+.|.+.   ++||.++++..+|.+.|+||...
T Consensus       337 ---------~v--~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          337 ---------NV--LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             ---------EE--EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             ---------eE--EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence                     11  12346778888875   79999999999999999999843

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.06  E-value=0.032  Score=46.91  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=45.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      .|.|.|.||+|+|++|+.+|..+++||....+.+. |.    +++.-+     ..+.+.+..|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999766 33    445442     1134556667766664

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.89  E-value=0.018  Score=50.73  Aligned_cols=47  Identities=19%  Similarity=0.183  Sum_probs=35.6

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe-e----CCEEEEEEEE
Q 018281           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D----GGWFMDVFHV   81 (358)
Q Consensus        35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~----~g~~~d~f~V   81 (358)
                      ...|.|.+.||||+|++|+.+|++++.||...+..+ .    ++.+.-.+-+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV   55 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   55 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEE
Confidence            457899999999999999999999999999999988 3    5666544444

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.57  E-value=0.58  Score=45.37  Aligned_cols=138  Identities=13%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             CeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEec---CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcC
Q 018281          127 DHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (358)
Q Consensus       127 ~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~---~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~  202 (358)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||......|.   .|...-.|.|...       +.++   ..+.|.+ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~~~---a~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DGRR---AMEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------THHH---HHHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hHHH---HHHHHHH-HHH
Confidence            45567777 589999999999999999999986655442   3434445666441       1222   2233332 211


Q ss_pred             CCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEe---CCcc
Q 018281          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RDRA  279 (358)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~---~Drp  279 (358)
                      +..                                                 ...|.+++    +...+.|.+   .++|
T Consensus       332 ~~~-------------------------------------------------~~~v~~~~----~~a~vsvVG~gm~~~~  358 (421)
T 3ab4_A          332 QGN-------------------------------------------------WTNVLYDD----QVGKVSLVGAGMKSHP  358 (421)
T ss_dssp             TTT-------------------------------------------------CSEEEEEC----CEEEEEEECGGGTSCT
T ss_pred             HcC-------------------------------------------------CceEEEeC----CeEEEEEEccCcccCc
Confidence            111                                                 01233322    566788887   4899


Q ss_pred             hhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhh
Q 018281          280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (358)
Q Consensus       280 GLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  341 (358)
                      |++.++.++|.+.||||....  |-  ...=.|.|..         +..++.-++|..++-.
T Consensus       359 Gv~a~~f~aL~~~~InI~~is--~S--e~~is~vV~~---------~d~~~Av~~Lh~~f~~  407 (421)
T 3ab4_A          359 GVTAEFMEALRDVNVNIELIS--TS--EIRISVLIRE---------DDLDAAARALHEQFQL  407 (421)
T ss_dssp             THHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEG---------GGHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHCCCCEEEEE--cC--CCeEEEEEeH---------HHHHHHHHHHHHHHhc
Confidence            999999999999999999554  32  2223354543         3445555666666643

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.54  E-value=0.084  Score=46.08  Aligned_cols=145  Identities=11%  Similarity=0.116  Sum_probs=83.6

Q ss_pred             CCCCeEEEEEE-eCCcccHHHHHHHHHHhCCCcEEEEEEEe---cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          124 SVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT---HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       124 ~~~~~t~v~V~-~~DrpGLL~~I~~~L~~~g~nI~~A~i~T---~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ...+...|+|. .+|+||+.++|..+|++.|+||..--...   .++.....|.+...          ..+.....|.+.
T Consensus        31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~----------d~~~~~~~l~~~  100 (200)
T 4go7_X           31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD----------VGPAAVEKLDSL  100 (200)
T ss_dssp             EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG----------GHHHHHHHHHTT
T ss_pred             ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh----------hHHHHHHHHHHH
Confidence            34466677776 58999999999999999999998643322   23344445666541          112222222211


Q ss_pred             HcCCCCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEE---eC
Q 018281          200 LRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVK---CR  276 (358)
Q Consensus       200 L~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~---~~  276 (358)
                      ..                        .+       .                   ...|.+++    +...+.|.   -+
T Consensus       101 ~~------------------------~~-------~-------------------~~~v~~~~----~iakVSvVG~GM~  126 (200)
T 4go7_X          101 RN------------------------EI-------G-------------------FSQLLYDD----HIGKVSLIGAGMR  126 (200)
T ss_dssp             HH------------------------HH-------C-------------------CSEEEEEC----CEEEEEEEEESCT
T ss_pred             Hh------------------------hh-------c-------------------eeeEEEec----Ceeeeeeeccccc
Confidence            00                        00       0                   01233332    34455555   48


Q ss_pred             CcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHhhccCC
Q 018281          277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSE  345 (358)
Q Consensus       277 DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~~  345 (358)
                      .+||+..++-++|++.||||....  | .+ ..=.|.|..         ++.++--++|..+..-..++
T Consensus       127 ~~~GVaak~F~aLa~~~INI~mIs--t-SE-i~IS~vV~~---------~d~~~Av~aLH~~F~L~~~~  182 (200)
T 4go7_X          127 SHPGVTATFCEALAAVGVNIELIS--T-SE-IRISVLCRD---------TELDKAVVALHEAFGLGGDE  182 (200)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCEEE--E-CS-SEEEEEEEG---------GGHHHHHHHHHHHHTC----
T ss_pred             cCCCcHHHHHHHHHHCCCCEEEEE--c-cC-CEEEEEEeH---------HHHHHHHHHHHHHhCCCCCc
Confidence            899999999999999999999885  2 22 222344532         34444456777776544444

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.52  E-value=0.019  Score=50.27  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             CCeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEe---eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC
Q 018281           33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS---DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (358)
Q Consensus        33 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~  108 (358)
                      .+...|+|. .+|+||..++|.+.|++.|+||---....   .++.....|.+...         ..+.....|..... 
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~---------d~~~~~~~l~~~~~-  102 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD---------VGPAAVEKLDSLRN-  102 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG---------GHHHHHHHHHTTHH-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh---------hHHHHHHHHHHHHh-
Confidence            467788887 59999999999999999999998544432   24555556777532         11222222221110 


Q ss_pred             CCCcccCCceeeeecCCCCeEEEEEE---eCCcccHHHHHHHHHHhCCCcEEEEE
Q 018281          109 TAGAKTWPSKQVGVHSVGDHTAIELI---GRDRPGLLSEISAVLANLRFNVAAAE  160 (358)
Q Consensus       109 ~~~~r~~~~~~v~~~~~~~~t~v~V~---~~DrpGLL~~I~~~L~~~g~nI~~A~  160 (358)
                      .    ... ..+  ....+...|.|.   .+.+||+.+++..+|++.|+||..-.
T Consensus       103 ~----~~~-~~v--~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          103 E----IGF-SQL--LYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             H----HCC-SEE--EEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             h----hce-eeE--EEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            0    000 011  122345566666   45799999999999999999998654

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.52  E-value=0.021  Score=50.30  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=30.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEec
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~  164 (358)
                      ...+.|.+.||||+|++|+++|+++++||...+..+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~   40 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLI   40 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEcc
Confidence            4678999999999999999999999999999999884

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=92.81  E-value=0.35  Score=44.39  Aligned_cols=54  Identities=7%  Similarity=0.017  Sum_probs=43.2

Q ss_pred             ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC-ceEEEEEEEeCCCCc
Q 018281          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCI  321 (358)
Q Consensus       267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~-~a~d~F~v~~~~g~~  321 (358)
                      ..|.|-+..+|+||-||++-..|+.+|||+.+..-.-.+. .-+=.|||- -+|+.
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD-~eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYAD-FIGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEE-EESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEE-EecCC
Confidence            4566777778999999999999999999999999875444 466677774 56765

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=91.34  E-value=0.48  Score=44.10  Aligned_cols=54  Identities=15%  Similarity=0.126  Sum_probs=42.8

Q ss_pred             ceeEEEEEeC-CcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeCCCCc
Q 018281          267 GYSVVNVKCR-DRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCI  321 (358)
Q Consensus       267 ~~t~l~v~~~-DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~~g~~  321 (358)
                      ..|-|-+..+ |+||-||++-..|+.+|||+.+..-.-.+ ..-+=.|||- .+|+.
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD-~eg~~  255 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSID-ADGHA  255 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEE-EESCT
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEE-EeCCC
Confidence            5677777885 99999999999999999999999887444 4455677774 56765

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.11  E-value=1.1  Score=42.11  Aligned_cols=52  Identities=6%  Similarity=0.031  Sum_probs=39.3

Q ss_pred             eEEEEEeC--CcchhHHHHHHHhhcCCeEEEEEEEEecCCc-eEEEEEEEeCCCCc
Q 018281          269 SVVNVKCR--DRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCI  321 (358)
Q Consensus       269 t~l~v~~~--DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~-a~d~F~v~~~~g~~  321 (358)
                      |.+-+..+  |+||-||++-..|+.+|||+.+..-.-.+.+ -+=.||| |-+|+.
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~  261 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAP  261 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCT
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCc
Confidence            33444444  7999999999999999999999998755555 4456666 567765

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=91.09  E-value=0.77  Score=45.89  Aligned_cols=52  Identities=21%  Similarity=0.307  Sum_probs=42.7

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEe
Q 018281          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND  176 (358)
Q Consensus       125 ~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~  176 (358)
                      .+.+..+.+.-+|+||.+..|+..|.++|+||.+.++..  .++.+.-.+.+..
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~  504 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ  504 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC
Confidence            445678888999999999999999999999999999986  4566665555544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.76  E-value=0.59  Score=45.11  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=44.2

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      +...+.+.-.|+||.+..|+.+|.++|+||......+.++.+.-++.+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            45678899999999999999999999999999999998888877776655

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=90.60  E-value=0.74  Score=41.85  Aligned_cols=51  Identities=6%  Similarity=0.057  Sum_probs=41.6

Q ss_pred             ceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEecC-CceEEEEEEEeC
Q 018281          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHM  317 (358)
Q Consensus       267 ~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~a~d~F~v~~~  317 (358)
                      ..|.|-+..   +|+||-||++-..|+.+|||+.+..-.-.+ ..-+=.|||-..
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence            456677777   899999999999999999999999987544 456678888543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.32  E-value=0.83  Score=44.09  Aligned_cols=49  Identities=14%  Similarity=0.231  Sum_probs=42.3

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (358)
Q Consensus        34 ~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~   82 (358)
                      +...+.+.-.|+||.+.+|+.+|.++|+||......+.++.++-++-+.
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            4567889999999999999999999999999999999888877555553

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=90.05  E-value=0.53  Score=46.11  Aligned_cols=106  Identities=14%  Similarity=0.195  Sum_probs=67.5

Q ss_pred             eEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 018281           35 CTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (358)
Q Consensus        35 ~~~v~v~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  111 (358)
                      .+.|+|.+   ++.||..++|..+|+.+|+||.--  .+...  --+|.|...+-.. ......+.++..+.    ..  
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~~-~~~~~~~el~~~~~----~~--  366 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLDG-KCDKIIEEIKKQCN----PD--  366 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHTT-THHHHHHHHHHHSC----CS--
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHHH-HHHHHHHHHHHhcC----CC--
Confidence            45567774   689999999999999999999732  22222  2347775332111 00122333333322    10  


Q ss_pred             cccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281          112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (358)
Q Consensus       112 ~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~  160 (358)
                             .|  ....+...|.|.|.   .+||+.+++..+|.+.|+||....
T Consensus       367 -------~v--~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          367 -------SI--EIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             -------EE--EEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             -------cE--EEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence                   11  12236678898876   589999999999999999998543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.72  E-value=0.99  Score=45.09  Aligned_cols=49  Identities=20%  Similarity=0.124  Sum_probs=39.8

Q ss_pred             CceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec--CCceEEEEEE
Q 018281          266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYI  314 (358)
Q Consensus       266 ~~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~--g~~a~d~F~v  314 (358)
                      ..+..|-+.-+|+||.+..|+..|.++||||..+++.-.  |+.+.=.+.+
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v  502 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL  502 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE
Confidence            355668899999999999999999999999999999754  4455544444

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=87.53  E-value=2.5  Score=41.29  Aligned_cols=107  Identities=12%  Similarity=0.135  Sum_probs=68.2

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHcCC
Q 018281          127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (358)
Q Consensus       127 ~~t~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~L~~~  203 (358)
                      +.+.|+|.+   .+.||++++|..+|+++|++|....  +  +...-.|.|... +   +.  .....+.+.|...+.  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~--~~~~is~~V~~~-d---~~--~~~~~~~~el~~~~~--  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--S--GVDSVSLVIEDC-K---LD--GKCDKIIEEIKKQCN--  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--E--ETTEEEEEEEHH-H---HT--TTHHHHHHHHHHHSC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--c--CCCEEEEEEecc-h---HH--HHHHHHHHHHHHhcC--
Confidence            455678875   6899999999999999999997532  2  122334656541 0   00  011222222322111  


Q ss_pred             CCCcchhhccccccccccchhhhhhhhhcccccccCCCCCCCccCCCCCCCCCEEEEecCCCCceeEEEEEeC---Ccch
Q 018281          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAK  280 (358)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~n~~~~~~t~l~v~~~---DrpG  280 (358)
                                                                         ...|.+++    +...|.|.+.   .+||
T Consensus       365 ---------------------------------------------------~~~v~v~~----~vA~VSvVG~gM~~~~G  389 (446)
T 3tvi_A          365 ---------------------------------------------------PDSIEIHP----NMALVATVGTGMAKTKG  389 (446)
T ss_dssp             ---------------------------------------------------CSEEEEEE----EEEEEEEECGGGSSCTT
T ss_pred             ---------------------------------------------------CCcEEEeC----CeEEEEEECCCccCChh
Confidence                                                               01233332    5567888874   5999


Q ss_pred             hHHHHHHHhhcCCeEEEEEE
Q 018281          281 LMFDIVCTLTDMQYVVFHAA  300 (358)
Q Consensus       281 LL~~I~~~l~~~~v~I~~a~  300 (358)
                      +..++-++|.+.||||....
T Consensus       390 vaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          390 IANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             HHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEE
Confidence            99999999999999998865

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.82  E-value=1.9  Score=41.68  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=44.4

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEE
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN  175 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~  175 (358)
                      .+...|.+.-+|.||.|..|..+|+++|+||..-...|.++.+.-+.-+.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            35689999999999999999999999999999999999998886666554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.78  E-value=2.7  Score=40.63  Aligned_cols=49  Identities=6%  Similarity=0.021  Sum_probs=43.5

Q ss_pred             ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEE
Q 018281          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR  315 (358)
Q Consensus       267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~  315 (358)
                      ..+.|-+.-.++||.|..|+.+|+++|+||......|.|+-+.-+.-|.
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            4567888899999999999999999999999999999999987776553

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=86.63  E-value=11  Score=37.46  Aligned_cols=138  Identities=15%  Similarity=0.168  Sum_probs=83.4

Q ss_pred             CeEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCC-ChhHHHHHHHHHCCCCCCC
Q 018281           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT  109 (358)
Q Consensus        34 ~~~~v~v~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~-~~~~~~~l~~~L~~~~~~~  109 (358)
                      +.+.|+|.+   .++||..++|..+|+.+|+||.--  .|...  --+|.|...+..... ..+.++.+...|....   
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~--sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~---  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEV--SISLTLDPSKLWSRELIQQELDHVVEELEKIA---  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETT--EEEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCC--eEEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence            456677774   678999999999999999999855  23222  223666432211100 1234455555554311   


Q ss_pred             CCcccCCceeeeecCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChH
Q 018281          110 AGAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT  187 (358)
Q Consensus       110 ~~~r~~~~~~v~~~~~~~~t~v~V~~~--DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~  187 (358)
                               .+.  ...+...|.|.|.  ..||+.+++..+|.+.|+||....-  -.....-.|.|..          +
T Consensus       413 ---------~v~--~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsq--GsSei~Is~vV~~----------~  469 (510)
T 2cdq_A          413 ---------VVN--LLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQ--GASKVNISFIVNE----------A  469 (510)
T ss_dssp             ---------EEE--EEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEE--CTTCSEEEEEEEH----------H
T ss_pred             ---------eEE--EeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEe--cCCcceEEEEEeH----------H
Confidence                     111  1235667888876  7889999999999999999975321  1222334455544          3


Q ss_pred             HHHHHHHHHHHHHc
Q 018281          188 RLSLMEEQLKNILR  201 (358)
Q Consensus       188 ~~~~L~~~L~~~L~  201 (358)
                      ..++.-+.|++.+-
T Consensus       470 d~~~Av~aLH~~f~  483 (510)
T 2cdq_A          470 EAEGCVQALHKSFF  483 (510)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            33445555666553

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=85.67  E-value=1.6  Score=42.72  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=28.6

Q ss_pred             eEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEE
Q 018281          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI  301 (358)
Q Consensus       269 t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i  301 (358)
                      +-|.+...|+||.|.+|+.+|.++||+|.+..=
T Consensus       360 yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          360 YYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            348999999999999999999999999988653

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=83.25  E-value=4.8  Score=36.73  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..|.|.+..+|+||-|+++.+.|+.+|+|+..-+..- .++...-.|+|.-  .|.. .+    +.+++.|.+
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~~-~d----~~v~~aL~~  264 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGHR-ED----QNVHNALEN  264 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESCT-TS----HHHHHHHHH
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecCC-Cc----HHHHHHHHH
Confidence            3566667778999999999999999999999888876 4455677888876  3543 23    235555554

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=82.74  E-value=1.7  Score=35.84  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=68.2

Q ss_pred             CeEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 018281           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (358)
Q Consensus        34 ~~~~v~v~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (358)
                      +...|+|.+   ++.||..+++..+|+..|+||.--.  +...  --+|+|.+.+        ....+.+.|.. ..   
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~--------~~~~il~~l~~-~~---   80 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK--------NLPDIVRALSD-IG---   80 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT--------THHHHHHHHTT-TE---
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH--------HHHHHHHHHhc-cC---
Confidence            567888874   6889999999999999999995322  3222  2346664221        12333334443 11   


Q ss_pred             CcccCCceeeeecCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       111 ~~r~~~~~~v~~~~~~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                              .+  ....+...|.+.|.   ++||+.+++..+|.  |+||....-.+-  ...-.|.|..
T Consensus        81 --------~v--~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~S--e~~is~vv~~  135 (157)
T 3mah_A           81 --------DV--TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGS--NYNVSVLVKA  135 (157)
T ss_dssp             --------EE--EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSS--SSCEEEEEEG
T ss_pred             --------eE--EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCC--CCEEEEEEcH
Confidence                    11  12235678888875   68999999999999  888875432221  2234455544

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=82.20  E-value=6.5  Score=35.58  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=40.9

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       127 ~~t~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      ..|.|.+..   +|+||-|+++.+.|+.+|+|+..-+..- .++...-.|+|.-
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  238 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA  238 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence            455666666   8999999999999999999999888876 4455677888877

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=81.61  E-value=6.6  Score=36.39  Aligned_cols=50  Identities=22%  Similarity=0.211  Sum_probs=40.5

Q ss_pred             CeEEEEEEeC-CcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       127 ~~t~v~V~~~-DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      ..|.|.+..+ |+||.|+++.+.|+.+|+|+...+..- .++...-.|+|.-
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  251 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA  251 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence            5677777775 999999999999999999998888775 4444566788866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	3e-05
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	2e-04

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA---CVLYVNDDT 178
             + +I  ++ G+L +++ ++A    N+  A+ +           ++Y   + 
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG 54

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV 174
           S+  H  I  +G DRPG+ +E+  ++     N+  + +    +    ++ +
Sbjct: 1   SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.83
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.79
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.65
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.6
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.24
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.21
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.79
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.72
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.69
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.63
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.53
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.52
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.5
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.43
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.42
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.42
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.26
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.23
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.2
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.02
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.96
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.88
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.16
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.42
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	93.86
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	92.89
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	89.6
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	87.47
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.34
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.3
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	84.16
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.1

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.83  E-value=1.4e-08  Score=75.67  Aligned_cols=65  Identities=17%  Similarity=0.400  Sum_probs=57.1

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       126 ~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..+++|++.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|..+        +..+++|+..|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999998888888762        3456788888875

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.79  E-value=2.4e-08  Score=74.41  Aligned_cols=64  Identities=22%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281           33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (358)
Q Consensus        33 ~~~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~  103 (358)
                      ..+++|+++|+||||++++++++|+++||||.+++.++.++.+.-.+.|.-+       +...++|++.|.
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~   66 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLP   66 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHH
Confidence            4678999999999999999999999999999999999999988877777532       133456666554

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.65  E-value=8.5e-08  Score=70.76  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ   85 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~   85 (358)
                      ++|++.|+||||++++++++|+++|+||.+.+.++.++.+.-.+.+..+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~   52 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE   52 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEec
Confidence            57999999999999999999999999999999999888887767665443

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.60  E-value=1.7e-07  Score=69.08  Aligned_cols=63  Identities=16%  Similarity=0.382  Sum_probs=52.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ++|++.|+||||++++++++|+++|+||.+....+.++.+.-.+.+..+ .+.      ..+.|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cCC------CHHHHHHHHHH
Confidence            6899999999999999999999999999999999988888777777763 221      13567777765

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.24  E-value=1.7e-06  Score=64.96  Aligned_cols=66  Identities=14%  Similarity=0.235  Sum_probs=47.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCC--------eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--------RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~--------~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ...|.|.|+|||||+++|+++|+++|+||.+....|..+        .+...+.+..| .+      .....|++.|...
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p-~~------~~~~~l~~~l~~l   78 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SG------CNLMQLQEEFDAL   78 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TT------SCHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcC-cc------ccHHHHHHHHHHH
Confidence            456889999999999999999999999999999877432        23333334443 22      2246788888764


Q ss_pred             H
Q 018281          200 L  200 (358)
Q Consensus       200 L  200 (358)
                      .
T Consensus        79 ~   79 (93)
T d1u8sa2          79 C   79 (93)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.21  E-value=1.4e-06  Score=65.41  Aligned_cols=68  Identities=10%  Similarity=-0.004  Sum_probs=46.7

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCC----ceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHH
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP----HASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~----~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  339 (358)
                      .|.|.|+|||||+++|+++|+++|+||..+.-.|+..    ...+.|..+-...-|-  ....+.|+++|....
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~--~~~~~~l~~~l~~l~   79 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALC   79 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCc--cccHHHHHHHHHHHH
Confidence            4678899999999999999999999999999887654    3455677654322221  123566766665443

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.79  E-value=4.8e-05  Score=53.74  Aligned_cols=47  Identities=26%  Similarity=0.281  Sum_probs=42.4

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEe
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID   83 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~   83 (358)
                      +|.|..+|+||-|++++++|.+.|+||.....+..+++.+-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999988888887788753

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.72  E-value=6e-05  Score=53.22  Aligned_cols=47  Identities=13%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      +|.|..+|+||-|++++++|.+.|+||.....+..++.+.-.|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999988888877777755

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.69  E-value=7.6e-05  Score=52.49  Aligned_cols=46  Identities=22%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEE
Q 018281           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (358)
Q Consensus        37 ~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~   82 (358)
                      .+.|+..||||.|++++++|+..|+||.+-.+....+..+-.|.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            5899999999999999999999999999998876555555556553

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.63  E-value=6.1e-05  Score=54.07  Aligned_cols=48  Identities=6%  Similarity=0.014  Sum_probs=34.6

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecC-Cc--eEEEEEEEeC
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PH--ASQEYYIRHM  317 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g-~~--a~d~F~v~~~  317 (358)
                      -|.|.+.||||+|.+|+.+|+++++||.+....+.. +.  ..-.|++.+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            489999999999999999999999999999877632 23  4456666543

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=0.00024  Score=50.93  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEe--eCCEEEEEEEEEeCCCCCCCChhHHHHHHH
Q 018281           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEK  100 (358)
Q Consensus        35 ~~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~  100 (358)
                      ...+.+.-.|+||.+++|+++|+..|+||....+.+  .+|.++-++.+   ++. + +++..++|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v---D~~-~-~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQD-V-PDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SSC-C-CHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc---CCC-c-cHHHHHHHHc
Confidence            356788889999999999999999999999999976  57777654444   332 2 2456666664

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=0.00033  Score=50.19  Aligned_cols=48  Identities=23%  Similarity=0.321  Sum_probs=40.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEE
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYV  174 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v  174 (358)
                      ..+.+.+.-.|+||.+++|+.+|.++|+||....+.+  .++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            3467888899999999999999999999999999876  55666555554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.50  E-value=0.00024  Score=49.87  Aligned_cols=47  Identities=21%  Similarity=0.228  Sum_probs=39.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      .+.|...|+||.|++++++|.+.|+||.+..+....+...-.|.+.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            58999999999999999999999999999888765555555554433

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.43  E-value=3.6e-05  Score=55.35  Aligned_cols=47  Identities=15%  Similarity=0.384  Sum_probs=35.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCee--EEEEEEEe
Q 018281          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRI--ACVLYVND  176 (358)
Q Consensus       130 ~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~--~d~F~v~~  176 (358)
                      -|.|.+.||||+|++|+.+++++|+||......+ ..|.+  ...+++..
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            5789999999999999999999999999999887 55543  45566655

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.42  E-value=0.00034  Score=49.88  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=48.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~~  199 (358)
                      ..+.+...|+||+|++|++.|+..|+||.+..+.-  ..+...-++.+..        +++.++++...|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCC
Confidence            47889999999999999999999999999999874  4455555566655        245667777777653

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.00039  Score=49.64  Aligned_cols=63  Identities=17%  Similarity=0.361  Sum_probs=45.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       128 ~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T--~~~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ...+.+...|+||+|++|++.|+..|+||.+..+..  ..+...-++.+..        +++.++.+...|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g--------~~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG--------DDKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE--------CTTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc--------CHHHHHHHHHHHhC
Confidence            357899999999999999999999999999999875  3444444555544        12344555555543

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00071  Score=48.00  Aligned_cols=62  Identities=16%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 018281          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (358)
Q Consensus       129 t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~-~~~~d~F~v~~~~~g~~~~~~~~~~~L~~~L~~  198 (358)
                      ..+.+...|+||+|++|++.|+..|+||.+..+.- .. +...-++.+..        +++.++.+...|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~--------~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            36889999999999999999999999999999874 33 33333333322        24556677777665

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.0028  Score=45.69  Aligned_cols=45  Identities=4%  Similarity=-0.032  Sum_probs=38.5

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEE
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI  314 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v  314 (358)
                      .|.+.-.|+||.|.+|+++|.+.|+||......+.++.+...-.+
T Consensus        13 rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          13 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             EEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            477778999999999999999999999999999888766654333

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.0016  Score=47.10  Aligned_cols=48  Identities=23%  Similarity=0.327  Sum_probs=39.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEE
Q 018281          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV  174 (358)
Q Consensus       127 ~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v  174 (358)
                      ....+.+.-.|+||.+++|+++|.++|+||.+....+.++....+..+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            345788889999999999999999999999999888866555444444

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.0036  Score=44.44  Aligned_cols=62  Identities=29%  Similarity=0.341  Sum_probs=45.8

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-e-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  104 (358)
                      ..|.++..|+||+|++|++.|+..|+||.+-.+. | ..|..--++.+.   |.    +...++|.+.|..
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~---g~----~~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK---GD----DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE---EC----TTHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE---cC----HHHHHHHHHHHhC
Confidence            4789999999999999999999999999999886 4 456544344443   22    1355677666653

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0012  Score=46.83  Aligned_cols=66  Identities=12%  Similarity=0.201  Sum_probs=47.8

Q ss_pred             EEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHHHHHHHh
Q 018281          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (358)
Q Consensus       270 ~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  340 (358)
                      .|.+...|+||+|.+|+..|+.+|+||.+..+.-..+...-.|-+.-. |    ++...+++.+.|.+.++
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-~----~~~~i~qi~kQL~Klid   68 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G----DEKVLEQIEKQLHKLVD   68 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S----CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-C----CHHHHHHHHHHHhCCCC
Confidence            488999999999999999999999999999998434444444444321 2    24566777766665443

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.88  E-value=0.0021  Score=45.64  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-e-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (358)
Q Consensus        36 ~~v~v~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~  103 (358)
                      ..|.++..|+||.|++|++.|+..|+||.+-.+. | ..|..--++.+...       ++..++|.+.|.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~-------~~~i~qi~kQL~   65 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-------DEIVEQITKQLN   65 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-------HHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECC-------HHHHHHHHHHHh
Confidence            3688999999999999999999999999999996 5 56666555555421       235556665554

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.16  E-value=0.0048  Score=45.76  Aligned_cols=53  Identities=8%  Similarity=0.118  Sum_probs=43.0

Q ss_pred             ceeEEEEEeCCcchhHHHHHHHhhcCCeEEEEEEEEec-CCceEEEEEEEeCCCC
Q 018281          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGC  320 (358)
Q Consensus       267 ~~t~l~v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T~-g~~a~d~F~v~~~~g~  320 (358)
                      +.|-|-+..+|+||-|+++-..|+++|||+.+..-.-. +....=.|||. .+|+
T Consensus        15 ~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id-~eg~   68 (97)
T d1phza1          15 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTY-LDKR   68 (97)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEEC-BCGG
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEE-cccC
Confidence            56778888999999999999999999999999887744 44455578884 5665

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.42  E-value=0.031  Score=39.61  Aligned_cols=47  Identities=9%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             EEeCCcchhHHHHHHHhhcCCeEEEEEEEEe-cCCceEEEEEEEeCCCC
Q 018281          273 VKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-DGPHASQEYYIRHMDGC  320 (358)
Q Consensus       273 v~~~DrpGLL~~I~~~l~~~~v~I~~a~i~T-~g~~a~d~F~v~~~~g~  320 (358)
                      +...|+||-|+++-..|+++|||+.+..-.- .+..-+=.|||.. +|.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~-~g~   54 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA-DSA   54 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE-SCC
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ecC
Confidence            3457999999999999999999999998874 4445666788865 565

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.86  E-value=0.3  Score=34.19  Aligned_cols=46  Identities=20%  Similarity=0.267  Sum_probs=37.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       131 v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      +.+...|+||.|+++...|+++|+|+..-...- .+....-.|+|.-
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            344457999999999999999999999888775 4445667788877

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.89  E-value=0.11  Score=37.94  Aligned_cols=53  Identities=8%  Similarity=0.102  Sum_probs=42.4

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCcEEEEEEEe-cCCeeEEEEEEEe
Q 018281          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (358)
Q Consensus       124 ~~~~~t~v~V~~~DrpGLL~~I~~~L~~~g~nI~~A~i~T-~~~~~~d~F~v~~  176 (358)
                      ...+.|-|.+..+|+||.|+++...|+++|+|+....... .+....-.|||.-
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            3346678888889999999999999999999998777765 4444566788865

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=89.60  E-value=0.34  Score=32.59  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=41.1

Q ss_pred             EEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHC
Q 018281           37 VVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (358)
Q Consensus        37 ~v~v~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~  103 (358)
                      .|++.+   +++||+.+++..+|+..|+||.--...+..-.  -.|.|.+.+.     ++..+.|++.+-
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~--Is~~V~~~d~-----~~Av~~Lh~~F~   65 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVN--ISFVIDEKDL-----LNCVRKLHEKFI   65 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSE--EEEEEEGGGH-----HHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccce--EEEEEeHHHH-----HHHHHHHHHHHh
Confidence            577776   69999999999999999999986554443332  2377754322     245566666553

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=87.47  E-value=0.54  Score=34.21  Aligned_cols=65  Identities=11%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             CeEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEeeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC
Q 018281           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (358)
Q Consensus        34 ~~~~v~v~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~  105 (358)
                      +...|++.|   +++||+.+++..+|+..|+||.--...+..-  --+|.|...+.     +...+.|++.+...
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d~-----~~a~~~L~~~f~~~   81 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEEDV-----DKALKALKREFGDF   81 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTTH-----HHHHHHHHHHHCCC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHHH-----HHHHHHHHHHHHhh
Confidence            567899987   7999999999999999999999655444222  12477743211     35677788877543

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.34  E-value=1.5  Score=31.57  Aligned_cols=67  Identities=12%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             EEEecCCCCceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEEEecCCceEEEEEEEeCCCCcCCCHHHHHHHHHH
Q 018281          258 ITVERLEDKGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKC  334 (358)
Q Consensus       258 V~v~n~~~~~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~~l~~~  334 (358)
                      |.+.+    +.+.|.|.+   +++||++.+|-.+|++.|++|....-.+ . ...=.|.|..         .+.++..++
T Consensus         9 I~~~~----nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~-S-e~~Isf~V~~---------~d~~~a~~~   73 (100)
T d2hmfa3           9 ISTIK----NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS-S-ETNISLVVSE---------EDVDKALKA   73 (100)
T ss_dssp             EEEEE----EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC-T-TCCEEEEECS---------TTHHHHHHH
T ss_pred             EEecC----CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC-C-cceEEEEEeH---------HHHHHHHHH
Confidence            55544    567899987   7999999999999999999999865333 2 2334566643         234455556


Q ss_pred             HHHHH
Q 018281          335 LEAAI  339 (358)
Q Consensus       335 L~~~l  339 (358)
                      |.+.+
T Consensus        74 L~~~f   78 (100)
T d2hmfa3          74 LKREF   78 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66555

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.30  E-value=0.44  Score=34.11  Aligned_cols=35  Identities=6%  Similarity=0.162  Sum_probs=31.4

Q ss_pred             ceeEEEEEe---CCcchhHHHHHHHhhcCCeEEEEEEE
Q 018281          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAI  301 (358)
Q Consensus       267 ~~t~l~v~~---~DrpGLL~~I~~~l~~~~v~I~~a~i  301 (358)
                      +.+.|.|.+   .++||++++|-.+|++.|++|.....
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~   49 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT   49 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence            567899986   59999999999999999999999863

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.16  E-value=0.55  Score=33.57  Aligned_cols=35  Identities=14%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHhCCCcEEEEE
Q 018281          126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (358)
Q Consensus       126 ~~~t~v~V~~~---DrpGLL~~I~~~L~~~g~nI~~A~  160 (358)
                      .+.+.|+|.+.   ++||+++++..+|++.|+||..-.
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            46678899864   999999999999999999998764

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.10  E-value=2.6  Score=27.88  Aligned_cols=45  Identities=13%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             EEEEEe---CCcccHHHHHHHHHHhCCCcEEEEEEEecCCeeEEEEEEEe
Q 018281          130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (358)
Q Consensus       130 ~v~V~~---~DrpGLL~~I~~~L~~~g~nI~~A~i~T~~~~~~d~F~v~~  176 (358)
                      .|.+.|   .++||+.+++..+|.+.|+||......+  ....-.|.|..
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~--Se~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS--SEVNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESS--CSSEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecC--ccceEEEEEeH
Confidence            567776   5899999999999999999998544332  22345566655