Citrus Sinensis ID: 018302

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36

MSQWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAVESPLGKL

cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEEEccccccccccccccccHHHHHccccEEEEEEcccccHHHHHHHHHHcccccccccccccccccc

cccHHccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEEEccccccccHccccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEcccHHHHccccccEEcccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHccccHHHcccccHcHcHHHcccccEEEEEEcccHccccccEEEEEEEcHHHcccccEEEEEccccccHHHHHHHHHcccEEEcccccccccccc

msqwlhqrplhnplpnpyplsprnsmtfqfqrpmllvLNRTTLLVLLSLLVVLGVilpwtgtpgfmfpnatsslAKWRDYTLSQAASFVAKNGTIIVCAvsqpylpflnNWLISISRQKHQDQVLVIAEDYATLYKvngrwpghavlvppapdsqtahkfgsqgffnftsrrpchlLHILELGYnvmyndvdmvwlkdpfpylqgdhdvyftddmaavkpldhshdlpppgkkgrtyicscmiylrptdGAKLVMKKWIEELQaepwskakkandqpafnwalnktagqvdlyllpqsafptgglyfknqtwveetkgkhVIIHNNYITGFEKKIKRFRDFGlwlvddhavesplgkl

msqwlhqrplhnplpnpyPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLdhshdlpppgkkGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLvddhavesplgkl

MSQWLHQRplhnplpnpyplsprnSMTFQFQRPMllvlnrttllvllsllvvlgvilPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAVESPLGKL

**************************TFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPA****TAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKP*************GRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKA**ANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHA********

*************************************LNRTTLLVLLSLLVVLGVILPWTGTPGFM**************TLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAVE**L***

*************LP***************QRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNA*S**AKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAV*S*****

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		358	2.2.26 [Sep-21-2011]
Q54RP0		648	UDP-galactose:fucoside al	yes	no	0.726	0.401	0.226	2e-13

>sp\|Q54RP0\|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase OS=Dictyostelium discoideum GN=agtA PE=1 SV=1	Back alignment and function desciption

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 31/291 (10%)

Query: 77  WRDYTLSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYA 132
           +RD TL+    F    + K+  I+ C   + Y  F     I   R   +D ++  +    
Sbjct: 22  FRDMTLNLLKCFEKLSIDKSRYILYCMDDKAYQFFAEFKGIECQRFS-RDDIINSSTSST 80

Query: 133 TLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVD 192
            L+  N       +       S+ A  +G  GF    + +P  +L +L+ GYNV++ D D
Sbjct: 81  QLFHDNNTNDNKGIY------SENAESYGDIGFRAICNEKPLVVLDVLKKGYNVLWTDTD 134

Query: 193 MVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAK 252
           +VW +DPF        ++F  D+       +  D+    ++    IC+   ++R      
Sbjct: 135 IVWKRDPF--------IHFYQDINQENQFTNDDDIDLYVQQDDDDICAGFYFIRSNQRTI 186

Query: 253 LVMKKWI--------EELQAEPWSKAKKANDQPA---FNWALNKTAGQVDLYLLPQSAFP 301
             ++  I        +++    + K++  N +      + + N    ++   LL +  FP
Sbjct: 187 KFIQDSINFLNPCIDDQIAMRLFLKSQGINIKSKNILLSLSENDKKDKIRYRLLDKKLFP 246

Query: 302 TGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAVE 352
            G  YF N    +       IIHNN I G   K  RF ++GLW ++D  ++
Sbjct: 247 NGTNYF-NLKITQRDNITPFIIHNNCIIGHRSKKDRFIEYGLWYINDDEID 296

Specifically catalyzes the transfer of a galactosyl residue to the hydroxyproline-linked saccharide on Skp1 protein (fpaA/fpaB). Catalyzes the formation of a Gal-alpha-1,3-Fuc linkage, leading to Gal-Fuc-Gal-GlcNAc-HyPro143-Skp1.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 3EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		358
255541750		356	conserved hypothetical protein [Ricinus	0.991	0.997	0.841	1e-177
225454397		361	PREDICTED: UDP-galactose:fucoside alpha-	0.946	0.939	0.798	1e-163
449441404		355	PREDICTED: UDP-galactose:fucoside alpha-	0.991	1.0	0.784	1e-162
296085981		1331	unnamed protein product [Vitis vinifera]	0.955	0.256	0.8	1e-161
147777556		309	hypothetical protein VITISV_003084 [Viti	0.854	0.990	0.836	1e-155
297810037		356	hypothetical protein ARALYDRAFT_912111 [	0.977	0.983	0.781	1e-155
30678839		360	rhamnogalacturonan II specific xylosyltr	0.988	0.983	0.778	1e-155
74027164		357	putative alpha 1,3-xylosyltransferase [L	0.994	0.997	0.779	1e-154
225448972		360	PREDICTED: UDP-galactose:fucoside alpha-	0.949	0.944	0.801	1e-153
2191131		444	A_IG002N01.8 gene product [Arabidopsis t	0.988	0.797	0.754	1e-153

>gi\|255541750\|ref\|XP_002511939.1\| conserved hypothetical protein [Ricinus communis] gi\|223549119\|gb\|EEF50608.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/359 (84%), Positives = 325/359 (90%), Gaps = 4/359 (1%)

Query: 1   MSQWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWT 60
           M+ +LHQRPLHN L +PYPLSPRNS   Q Q   + + +RT L+VL SLL++LGV +PWT
Sbjct: 1   MTSFLHQRPLHNSLSDPYPLSPRNSANSQRQ---ISIFSRTGLIVLFSLLLILGVFVPWT 57

Query: 61  GTPGFMF-PNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQK 119
             P  +F     SS+AKWR YTL QAASFVA+NGT+IVCAVSQPYLPFLNNWLISI+RQK
Sbjct: 58  ELPNGIFSATKQSSVAKWRQYTLPQAASFVAQNGTVIVCAVSQPYLPFLNNWLISITRQK 117

Query: 120 HQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHI 179
           HQD+VLVIAEDYATLYKVN +WPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRP HLLH+
Sbjct: 118 HQDKVLVIAEDYATLYKVNEKWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPRHLLHL 177

Query: 180 LELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYIC 239
           LELGYNVMYNDVDMVWL DPF YL+G HDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYIC
Sbjct: 178 LELGYNVMYNDVDMVWLGDPFIYLEGKHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYIC 237

Query: 240 SCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQSA 299
           SCMI+L PT GAKLVMKKWI+ELQA+PWSKAKKANDQPAFNWALNKTAGQVDLYLLPQ+A
Sbjct: 238 SCMIFLHPTVGAKLVMKKWIKELQAQPWSKAKKANDQPAFNWALNKTAGQVDLYLLPQAA 297

Query: 300 FPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAVESPLGKL 358
           FPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHA ESPLGKL
Sbjct: 298 FPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAQESPLGKL 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225454397\|ref\|XP_002279469.1\| PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase [Vitis vinifera] gi\|297745375\|emb\|CBI40455.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449441404\|ref\|XP_004138472.1\| PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase-like [Cucumis sativus] gi\|449495244\|ref\|XP_004159776.1\| PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|296085981\|emb\|CBI31422.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147777556\|emb\|CAN69309.1\| hypothetical protein VITISV_003084 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297810037\|ref\|XP_002872902.1\| hypothetical protein ARALYDRAFT_912111 [Arabidopsis lyrata subsp. lyrata] gi\|297318739\|gb\|EFH49161.1\| hypothetical protein ARALYDRAFT_912111 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30678839\|ref\|NP_849279.1\| rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana] gi\|7267619\|emb\|CAB80931.1\| hypothetical protein [Arabidopsis thaliana] gi\|193885155\|gb\|ACF28391.1\| At4g01220 [Arabidopsis thaliana] gi\|332656595\|gb\|AEE81995.1\| rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|74027164\|gb\|AAZ94713.1\| putative alpha 1,3-xylosyltransferase [Linum usitatissimum]	Back alignment and taxonomy information

>gi\|225448972\|ref\|XP_002273155.1\| PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|2191131\|gb\|AAB61018.1\| A_IG002N01.8 gene product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		358
TAIR\|locus:2124968		360	MGP4 "male gametophyte defecti	0.840	0.836	0.834	4.6e-144
TAIR\|locus:2133392		361	RGXT1 "rhamnogalacturonan xylo	0.840	0.833	0.766	7.9e-133
TAIR\|locus:2133457		367	RGXT2 "rhamnogalacturonan xylo	0.840	0.820	0.726	5.9e-128
TAIR\|locus:2027605		383	RGXT3 "RhamnoGalacturonan spec	0.840	0.785	0.730	9.6e-128
TAIR\|locus:2026831		537	RAY1 "REDUCED ARABINOSE YARIV	0.712	0.474	0.273	6.2e-12
DICTYBASE\|DDB_G0283005		648	agtA "UDP-Gal:fucoside alpha3-	0.731	0.404	0.245	5.7e-11
TAIR\|locus:2058769		644	XEG113 "xyloglucanase 113" [Ar	0.706	0.392	0.273	2.1e-10
TAIR\|locus:2119827		715	AT4G19970 "AT4G19970" [Arabido	0.486	0.243	0.252	7.9e-06
TAIR\|locus:2037248		428	RRA2 "REDUCED RESIDUAL ARABINO	0.670	0.560	0.259	7.9e-06
TAIR\|locus:2156304		367	AT5G44820 "AT5G44820" [Arabido	0.368	0.359	0.244	0.0005

TAIR\|locus:2124968 MGP4 "male gametophyte defective 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1408 (500.7 bits), Expect = 4.6e-144, P = 4.6e-144
 Identities = 252/302 (83%), Positives = 273/302 (90%)

Query:    58 PWTGTPGFMFPNATS-SLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISIS 116
             PW G+P F  PN  S S +KWRDY+L QA  FVAKNGT+IVCAVS PYLPFLNNWLIS+S
Sbjct:    58 PWAGSPLFPSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVS 117

Query:   117 RQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHL 176
             RQKHQDQVLVIAEDYATLYKVN +WPGHAVL+PPA DSQTAHKFGSQGFFNFT+RRP HL
Sbjct:   118 RQKHQDQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHL 177

Query:   177 LHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRT 236
             L ILELGYNVMYNDVDMVWL+DPF YL+G HD YF DDM A+KPLDHSHDLPPPGKKGRT
Sbjct:   178 LEILELGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPLDHSHDLPPPGKKGRT 237

Query:   237 YICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLP 296
             YICSCMI+LRPT+GAKL+MKKWIEEL+ +PWS+AKKANDQP FNWALNKTA QVD+YLL 
Sbjct:   238 YICSCMIFLRPTNGAKLLMKKWIEELETQPWSRAKKANDQPGFNWALNKTANQVDMYLLS 297

Query:   297 QSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRFRDFGLWLVDDHAVESPLG 356
             Q+AFPTGGLYFKN+TWV+ETKGKH IIHNNYI GFEKKIKRFRDF LWLVDDHA ESPLG
Sbjct:   298 QAAFPTGGLYFKNKTWVKETKGKHAIIHNNYIVGFEKKIKRFRDFNLWLVDDHASESPLG 357

Query:   357 KL 358
             KL
Sbjct:   358 KL 359

GO:0009507 "chloroplast" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010306 "rhamnogalacturonan II biosynthetic process" evidence=IMP

GO:0042285 "xylosyltransferase activity" evidence=IDA

GO:0048868 "pollen tube development" evidence=IMP

TAIR\|locus:2133392 RGXT1 "rhamnogalacturonan xylosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2133457 RGXT2 "rhamnogalacturonan xylosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027605 RGXT3 "RhamnoGalacturonan speciﬁc Xylosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026831 RAY1 "REDUCED ARABINOSE YARIV 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0283005 agtA "UDP-Gal:fucoside alpha3-galactosyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2058769 XEG113 "xyloglucanase 113" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2119827 AT4G19970 "AT4G19970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037248 RRA2 "REDUCED RESIDUAL ARABINOSE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2156304 AT5G44820 "AT5G44820" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		358
pfam03407		208	pfam03407, Nucleotid_trans, Nucleotide-diphospho-s	1e-44

>gnl\|CDD\|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase	Back alignment and domain information

 Score =  152 bits (385), Expect = 1e-44
 Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 22/225 (9%)

Query: 119 KHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPD-SQTAHKFGSQGFFNFTSRRPCHLL 177
              + +LV+A D     +     P    L+    D S+    FGS+ +   + RR   LL
Sbjct: 1   GLLENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLL 60

Query: 178 HILELGYNVMYNDVDMVWLKDPFPYLQ-GDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRT 236
            +LELGYN +++DVD+VWL++PFP L   D D+  + D       D              
Sbjct: 61  ELLELGYNFIFSDVDVVWLRNPFPLLYLPDADIIISSDNYDGTTADGLK----------N 110

Query: 237 YICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTA---GQVDLY 293
           ++     Y+RPT+ +  + KKW E L   P       +DQ  FN+ L + A         
Sbjct: 111 WLNGGFFYVRPTNRSIALFKKWAERLLTYP-----GLHDQDVFNYLLREGAAGELGYKCR 165

Query: 294 LLPQSAFPTGGLYFKNQTWVEETKGKHVIIHNNYITGFEKKIKRF 338
            L  + F  G    ++  +V +T  K V +H N  +G + K+ R 
Sbjct: 166 FLDTALF-GGFCQSRDWKYV-QTDKKPVAVHANCCSGTDGKLHRL 208

Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		358
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	100.0
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	98.53
PLN00176		333	galactinol synthase	98.32
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	98.25
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	98.04
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	97.42
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	97.36
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	97.2
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	97.08
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	97.05
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	96.66
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	96.17
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	96.08
PLN03181		453	glycosyltransferase; Provisional	95.97
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	95.79
PF03314		222	DUF273: Protein of unknown function, DUF273; Inter	92.44
PLN02829		639	Probable galacturonosyltransferase	88.74
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	82.83

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

Probab=100.00  E-value=1.3e-40  Score=303.97  Aligned_cols=203  Identities=34%  Similarity=0.579  Sum_probs=172.6

Q ss_pred             cccEEEEEecHHHHHHHhccCCCcEEecCC-CCCcccccccCchhHHHHHhhHHHHHHHHHHcCCcEEEeecceeeecCC
Q 018302          121 QDQVLVIAEDYATLYKVNGRWPGHAVLVPP-APDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDP  199 (358)
Q Consensus       121 ~~~vlVvAlD~~a~~~~~~~~pg~~v~~~~-~~~~~~~~~~gs~~f~~~~~~K~~~l~~lL~~Gy~Vl~sDvDvVWlrdP  199 (358)
                      .+|++|+|+|+++++.|++.++.|..+... .........+|+..|.+++|.|+.+++++|++||+|+++|+||||+|||
T Consensus         3 ~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp   82 (212)
T PF03407_consen    3 IDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDP   82 (212)
T ss_pred             cccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCc
Confidence            589999999999999999888887765543 2334467789999999999999999999999999999999999999999


Q ss_pred             cccc-cCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEecChhHHHHHHHHHHHHHcCccccCCCCCChHH
Q 018302          200 FPYL-QGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQAEPWSKAKKANDQPA  278 (358)
Q Consensus       200 l~~~-~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R~T~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~a  278 (358)
                      ++++ ..++|+.+++|.....+..          ..+..+|+||||+|+|+++++|+++|.+.+.+.     ++.+||.+
T Consensus        83 ~~~~~~~~~Di~~~~d~~~~~~~~----------~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~-----~~~~DQ~~  147 (212)
T PF03407_consen   83 LPYFENPDADILFSSDGWDGTNSD----------RNGNLVNTGFYYFRPTPRTIAFLEDWLERMAES-----PGCWDQQA  147 (212)
T ss_pred             HHhhccCCCceEEecCCCcccchh----------hcCCccccceEEEecCHHHHHHHHHHHHHHHhC-----CCcchHHH
Confidence            9999 7789999999876422111          113457999999999999999999999999874     46679999


Q ss_pred             HHHHHhhcC---CccEEEeccCCCcCCCceeeec-chhhhhc-CCceEEEEeCCcCChHHHHHHH
Q 018302          279 FNWALNKTA---GQVDLYLLPQSAFPTGGLYFKN-QTWVEET-KGKHVIIHNNYITGFEKKIKRF  338 (358)
Q Consensus       279 fN~ll~~~~---~~l~v~~Lp~~~FpsG~~yf~~-~~~~~~~-~~~p~~VH~n~~~g~~~K~~rl  338 (358)
                      ||.++.+..   +++++++||...||||+.||.+ +.|.... +.+||+||+||+.|.++|++||
T Consensus       148 ~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~  212 (212)
T PF03407_consen  148 FNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANCCDGKEGKRQRF  212 (212)
T ss_pred             HHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcCCCChHhHHhhC
Confidence            999999975   7999999999999999999988 2232111 4689999999999999999886

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>PLN03181 glycosyltransferase; Provisional	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		358
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 33/211 (15%), Positives = 73/211 (34%), Gaps = 64/211 (30%)

Query: 173 PCHLLHILELGYNVMYNDVDMVW---------LKDPFPYLQGDHDVYF-----TDDMAAV 218
           P  LL ++   ++V+ +DV +V           K P         +Y       ++  A+
Sbjct: 388 PTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 219 --KPLDH--------SHDLPPPGKKGRTYICSCMIY-LRPTDGAKLV--MKKWIEELQAE 265
               +DH        S DL PP      Y  S + + L+  +  + +   +    + +  
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPERMTLFRMVFLDFR-- 501

Query: 266 PWSKAKKANDQPAFNW--ALNKTAGQVDLYLLPQSAFPTGGLYFKNQTWVEETKGKHVII 323
            + + K  +D  A+N   ++  T  Q+  Y                          ++  
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQLKFY------------------------KPYICD 536

Query: 324 HNNYITGFEKKIKRFRDFGLWLVDDHAVESP 354
           ++     +E+ +    DF L  ++++ + S 
Sbjct: 537 NDPK---YERLVNAILDF-LPKIEENLICSK 563

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		358
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	98.13
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	98.01
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	96.98
3tzt_A		276	Glycosyl transferase family 8; structural genomics	96.96

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

Probab=98.13  E-value=2.1e-05  Score=75.61  Aligned_cols=160  Identities=12%  Similarity=0.084  Sum_probs=94.9

Q ss_pred             EEEEeCcchHHHHHHHHHHhhhcCCcccEEEEEec---HHHHHHHhccCCCcEEecCCCCCccccc---ccCchhHHHHH
Q 018302           96 IVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQTAH---KFGSQGFFNFT  169 (358)
Q Consensus        96 Ivt~~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD---~~a~~~~~~~~pg~~v~~~~~~~~~~~~---~~gs~~f~~~~  169 (358)
                      |+.++|..|+.-+...+.|+++.+-...++|+..|   ++..+.+++.  ++.+..-+..+.....   ..... +...+
T Consensus         7 vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~--~~~v~~v~~l~~~~~~~~~~~~~~-~~~~t   83 (333)
T 1ll2_A            7 VTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIV--FDEVITVDILDSGDSAHLTLMKRP-ELGVT   83 (333)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHH--CSEEEECCTTSTTSTTHHHHHHCG-GGHHH
T ss_pred             EEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHh--CCEEEEEeecCCcchhhccccccc-chHHH
Confidence            33447899999999999999988754555555544   4555566654  3333321111111000   00111 12345


Q ss_pred             hhHHHHHHHHHHcCC-cEEEeecceeeecCCcccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEecC
Q 018302          170 SRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPT  248 (358)
Q Consensus       170 ~~K~~~l~~lL~~Gy-~Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R~T  248 (358)
                      +.|..+.. +  ..| .|++.|+|++.++|+-+.|..+ .+....|.               |+  ...+|+|+|.++++
T Consensus        84 ~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~---------------~~--~~~fNsGvmlin~~  142 (333)
T 1ll2_A           84 LTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP---------------GW--PDCFNSGVFVYQPS  142 (333)
T ss_dssp             HHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS---------------SS--TTSEEEEEEEECCC
T ss_pred             HHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC---------------CC--CcceeeeEEEEeCC
Confidence            55655543 2  345 4999999999999998877643 22211121               11  24799999999997


Q ss_pred             hhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhh
Q 018302          249 DGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNK  285 (358)
Q Consensus       249 ~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~  285 (358)
                      .   ..++++.+.+.+..   .-...||.++|.++.+
T Consensus       143 ~---~~~~~l~~~~~~~~---~~~~~DQ~~LN~~f~~  173 (333)
T 1ll2_A          143 V---ETYNQLLHVASEQG---SFDGGDQGLLNTFFNS  173 (333)
T ss_dssp             H---HHHHHHHHHHHHTC---CTTSSHHHHHHHHTTT
T ss_pred             H---HHHHHHHHHHHhcC---CCCCCCHHHHHHHHHh
Confidence            4   44455655554421   1345799999998864

PyMOL of 1ll2

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		358
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	98.42
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	97.86
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	81.1

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.42  E-value=3.6e-07  Score=82.16  Aligned_cols=172  Identities=13%  Similarity=0.022  Sum_probs=102.2

Q ss_pred             EEEE-eCcchHHHHHHHHHHhhhcCCcccEEEEEec---HHHHHHHhccCCCcEEecCCCCCcc--cccccCchhHHHHH
Q 018302           96 IVCA-VSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQ--TAHKFGSQGFFNFT  169 (358)
Q Consensus        96 Ivt~-~N~~~~~~~~Nwl~sl~~~g~~~~vlVvAlD---~~a~~~~~~~~pg~~v~~~~~~~~~--~~~~~gs~~f~~~~  169 (358)
                      .||. +|.+|+.-+...+.|+++.+-.-.++|+..+   ++..+.+++.  ++.+..-+..+..  .........+...+
T Consensus         6 ~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~t   83 (263)
T d1ll2a_           6 FVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIV--FDEVITVDILDSGDSAHLTLMKRPELGVT   83 (263)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHH--CSEEEECCTTSTTSTTHHHHHHCGGGHHH
T ss_pred             EEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHh--CCcceeEEeecCcchhhhhhhccccchhh
Confidence            3443 6999999999999999998764455555543   5555666655  3333322211111  11111112233455


Q ss_pred             hhHHHHHHHHHHcCCc-EEEeecceeeecCCcccccCCCceeeecCCcccCCCCCCCCCCCCCCCCCcccceeEEEEecC
Q 018302          170 SRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVKPLDHSHDLPPPGKKGRTYICSCMIYLRPT  248 (358)
Q Consensus       170 ~~K~~~l~~lL~~Gy~-Vl~sDvDvVWlrdPl~~~~~~~Dv~~s~D~~~~~~~~~~~~~p~~g~~~~~~iNsGf~~~R~T  248 (358)
                      +.|..+.. +  ..|+ |++.|+|++-++|+-+.|..+.-..+. |.                 ......|+|++.+.++
T Consensus        84 y~Kl~i~~-l--~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~-~~-----------------~~~~~~nsGv~l~~p~  142 (263)
T d1ll2a_          84 LTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFEREELSAAP-DP-----------------GWPDCFNSGVFVYQPS  142 (263)
T ss_dssp             HHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSCSSEEEE-CS-----------------SSTTSEEEEEEEECCC
T ss_pred             hHHHHHhh-h--cccceEEEeCCCEEEecCHHHHhcCCccceec-cC-----------------CCcccccCCcEEECcc
Confidence            56665543 2  3454 999999999999998888643211111 11                 0134789999999999


Q ss_pred             hhHHHHHHHHHHHHHcCccccCCCCCChHHHHHHHhhcCCccEEEecc
Q 018302          249 DGAKLVMKKWIEELQAEPWSKAKKANDQPAFNWALNKTAGQVDLYLLP  296 (358)
Q Consensus       249 ~~t~~~~~~w~~~l~~~~~~~~~~~~DQ~afN~ll~~~~~~l~v~~Lp  296 (358)
                      .....-+.+......      .....||..+|..+...........||
T Consensus       143 ~~~~~~i~~~~~~~~------~~~~~dq~~ln~~~~~~~~~~~~~~l~  184 (263)
T d1ll2a_         143 VETYNQLLHVASEQG------SFDGGDQGLLNTFFNSWATTDIRKHLP  184 (263)
T ss_dssp             HHHHHHHHHHHHHTC------CTTSSHHHHHHHHTTTTTTSCGGGBCC
T ss_pred             HHHHHHHHHHHHhhC------CCChhhhhHHHHHHHhhhccCcccccC
Confidence            877665554433321      235579999999887654433333444

PyMOL of d1ll2a_

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure