Citrus Sinensis ID: 018319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLSNINDKSHQIEV
Secondary Structure (PSIPRED)
ccccccHHHEEHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHEEEEcccccccccEEEEEEEcccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEccccccccccEcccccccccccccccccccEEEEEcHHHHccccccccccccEEEccccEEHHHHHHHEHHHHHHHcccccccccccccccccEEHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEc
Coil and Loop (DISEMBL)
MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRalnygkemernrdlSEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSpyiahvrsqfgladpfvsrccsKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVshvrlpniKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVAtqqasnpvhtvanslslpglqlitkklelpvkivfprnlfggvtpggnatdfMMLGLGDMAMPAMLLALVLCFdhrkssntvslfdlhsskghkyiwYALPGYAIGLVTAlsagvpstlgpVIVMSWVRKDLDELWEGtlsnindkshqiev
Flexible Loop (DISEMBL)
MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRalnygkemernrDLSEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPrnlfggvtpgGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWegtlsnindkshqiev
Low Complexity Region (SEG)
MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFmmlglgdmampamllalVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLSNINDKSHQIEV
Disordered region (IsUnstruct)
***LWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKE**********SIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLS***********
Disordered Region (DISOPRED)
**PLWKLLYLLEPAPVTLILTAVAVTFGSAFRA*********************RSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWE***************
Disordered Region (DISEMBL)
MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLSNINDKSHQIEV
Disordered Region (DISPRO)
*EPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERN**LSEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSS*****F****SKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLS***********
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLSNINDKSHQIEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q93Z32	372	Signal peptide peptidase-	yes	no	1.0	0.962	0.806	1e-173
Q7G7C7	371	Signal peptide peptidase-	yes	no	1.0	0.964	0.716	1e-151
Q9CUS9	384	Signal peptide peptidase-	yes	no	0.924	0.861	0.316	7e-43
Q8TCT6	385	Signal peptide peptidase-	yes	no	0.924	0.859	0.305	9e-41
Q8TCT9	377	Minor histocompatibility	no	no	0.818	0.777	0.267	2e-23
Q9D8V0	378	Minor histocompatibility	no	no	0.807	0.764	0.273	5e-23
Q5Z413	542	Signal peptide peptidase-	no	no	0.731	0.483	0.288	7e-21
Q53P98	534	Signal peptide peptidase-	no	no	0.723	0.485	0.271	3e-20
P49049	468	Intramembrane protease 2	yes	no	0.539	0.412	0.276	1e-17
Q9JJF9	523	Signal peptide peptidase-	no	no	0.684	0.468	0.277	2e-17

>sp|Q93Z32|SIPL1_ARATH Signal peptide peptidase-like 1 OS=Arabidopsis thaliana GN=SPPL1 PE=2 SV=1

 Score =  607 bits (1566), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/372 (80%), Positives = 327/372 (87%), Gaps = 14/372 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LW LLYLLEPAP TLI+TAV VTF SAFRALNYGKEMERNRD SEASI LD SQALM
Sbjct: 1   METLWTLLYLLEPAPATLIVTAVTVTFASAFRALNYGKEMERNRDFSEASITLDSSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSSCSL+LMFYLFSSVSQLLTA TA+ASVSSLF+ LSPY  ++++Q GL+DPF+SRC
Sbjct: 61  IPVMSSCSLLLMFYLFSSVSQLLTAFTAIASVSSLFYWLSPYAVYMKTQLGLSDPFLSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ LLL+AC   VVAWL+SGHW+LNNLLGI+ICIAFVSHVRLPNIKICAMLLV
Sbjct: 121 CSKSFTRIQGLLLVACAMTVVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLV 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMV+VATQQASNPVHTVANSL+LPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFFSERFFGANVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG +A+DFMMLGLGDMA+PAMLLALVLCFDHRK+ + V++FDL SSKGHK
Sbjct: 241 FPRNLLGGVVPGVSASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDLKSSKGHK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEG-TL 346
           YIWYALPGYAIGLV AL+AG             VPSTLGPVI MSW RKDL ELWEG  L
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFMSWRRKDLAELWEGPAL 360

Query: 347 SNINDKSHQIEV 358
           SN  +KSH+IE+
Sbjct: 361 SNPIEKSHEIEI 372

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|Q7G7C7|SIPL1_ORYSJ Signal peptide peptidase-like 1 OS=Oryza sativa subsp. japonica GN=SPPL1 PE=2 SV=1

 Score =  536 bits (1380), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/371 (71%), Positives = 303/371 (81%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LWKL YLLEPA + LILTAV+V + SA RAL++G+EMERN D SEASI LDRSQALM
Sbjct: 1   MESLWKLSYLLEPASLALILTAVSVAYASASRALDHGREMERNLDFSEASITLDRSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IP+ SSCSL+LMFYLFSSVS L+TA TAVAS  +LFFCLSPY+  VRS+ G+ DPFVSRC
Sbjct: 61  IPLASSCSLLLMFYLFSSVSHLVTAFTAVASAMALFFCLSPYVNCVRSRLGVGDPFVSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSK  TR+Q LL+  C   VVAWLVSGHW+LNNLLGI+ICIAFVSHVRLPNIKICA+LLV
Sbjct: 121 CSKPFTRLQGLLVAICVGTVVAWLVSGHWLLNNLLGISICIAFVSHVRLPNIKICALLLV 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYD+FWVFFSERFFGANVMVSVATQ+ASNPVHTVAN LSLPGLQLITKKLELPVK+V
Sbjct: 181 CLFVYDVFWVFFSERFFGANVMVSVATQKASNPVHTVANKLSLPGLQLITKKLELPVKLV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPR+L GG+ PG +  D+MMLGLGDMA+P MLLALVL FDHRK  +     D+  SK  K
Sbjct: 241 FPRSLMGGLAPGSSPGDYMMLGLGDMAIPGMLLALVLSFDHRKIKDMSVSQDMPPSKQRK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           Y+WYAL GY +GLVTAL+AG             VPSTLGPV+ MSW+R +L ELWEG+  
Sbjct: 301 YVWYALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLGPVMYMSWLRNELWELWEGSRP 360

Query: 348 NINDKSHQIEV 358
            INDK+H +EV
Sbjct: 361 IINDKAHLLEV 371

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9CUS9|SPPL3_MOUSE Signal peptide peptidase-like 3 OS=Mus musculus GN=Sppl3 PE=2 SV=3

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 193/376 (51%), Gaps = 45/376 (11%)

Query: 17  TLILTAVAVTFGSAFRALNYGKE-MERNRDL-----------SEASIM-LDRSQALMIPV 63
           T +++ + + +GS FR+LN   E  ++ +D            +  SI  +D +QAL +P+
Sbjct: 20  TFLISILLIVYGS-FRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPI 78

Query: 64  MSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSK 123
            +S SL++MF+ F SV  + T  TAV +  +  F L P   ++       +     CC +
Sbjct: 79  GASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCGR 138

Query: 124 SLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLF 183
             T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+  +LL  L 
Sbjct: 139 -FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGLL 197

Query: 184 VYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKLELPVKIVFP 242
           +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     +L LP K+VFP
Sbjct: 198 IYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLSLPGKLVFP 257

Query: 243 RNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRK---SSNTVSLFDLHSSKGH 299
            +           + F MLG+GD+ MP +LL  VL +D+ K   S ++       +  G 
Sbjct: 258 SS---------TGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISGR 308

Query: 300 ----KYIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELW 342
                Y    L GY +GL+TA  A              VP TL P++ M++++ DL  +W
Sbjct: 309 MQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMW 368

Query: 343 EGTLSNINDKSHQIEV 358
                + +  S  +EV
Sbjct: 369 SEPFHSKSSSSRFLEV 384

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8TCT6|SPPL3_HUMAN Signal peptide peptidase-like 3 OS=Homo sapiens GN=SPPL3 PE=1 SV=1

 Score =  167 bits (424), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 191/377 (50%), Gaps = 46/377 (12%)

Query: 17  TLILTAVAVTFGSAFRALNYGKE-MERNRDL---------SEASIM----LDRSQALMIP 62
           T +++ + + +GS FR+LN   E  ++ +D           +  I+    +D ++A  +P
Sbjct: 20  TFLISILLIVYGS-FRSLNMDFENQDKEKDSNSSSGSFNGEQEPIIGFQPMDSTRARFLP 78

Query: 63  VMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCS 122
           + +  SL++MF+ F SV  + T  TAV +  +  F L P   ++       +     CC 
Sbjct: 79  MGACVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNKISFGCCG 138

Query: 123 KSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCL 182
           +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+  +LL  L
Sbjct: 139 R-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGL 197

Query: 183 FVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKLELPVKIVF 241
            +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     +L LP K+VF
Sbjct: 198 LIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLSLPGKLVF 257

Query: 242 PRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRK---SSNTVSLFDLHSSKG 298
           P +           + F MLG+GD+ MP +LL  VL +D+ K   S ++       +  G
Sbjct: 258 PSS---------TGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISG 308

Query: 299 H----KYIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDEL 341
                 Y    L GY +GL+TA  A              VP TL P++ M++++ DL  +
Sbjct: 309 RMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRM 368

Query: 342 WEGTLSNINDKSHQIEV 358
           W     + +  S  +EV
Sbjct: 369 WSEPFHSKSSSSRFLEV 385

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8TCT9|HM13_HUMAN Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 163/370 (44%), Gaps = 77/370 (20%)

Query: 17  TLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLF 76
           +L+L A+   F  A R++       R ++ S+    +    A   P+++SC+L+ ++  F
Sbjct: 38  SLLLMALLPIFFGALRSV----RCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFF 93

Query: 77  SSVSQ-----LLTALTAVASVSSLFFCLSPYIAHV------RSQFGLADPFVSRCCSKSL 125
              SQ     LL+    V  + +L   +SP++           Q+ L     S    + +
Sbjct: 94  KIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEI 153

Query: 126 TRIQW----LLLLACTSVVVAW-LVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
              ++    L+ L  +S+V  W L+  HWI NNL G+A  +  V  + L N+    +LL 
Sbjct: 154 INYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLG 213

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
            LF+YD+FWV      FG NVMV+VA                        K  E P+K+V
Sbjct: 214 GLFIYDVFWV------FGTNVMVTVA------------------------KSFEAPIKLV 243

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FP++L   +  G  A +F MLGLGD+ +P + +AL+L FD     NT           H 
Sbjct: 244 FPQDL---LEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNT-----------HT 289

Query: 301 YIWYALPGYAIGL-------------VTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLS 347
           Y + +   Y  GL               AL   VP+ +G  ++++  + ++ E++    S
Sbjct: 290 YFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEES 349

Query: 348 NINDKSHQIE 357
           N  D +   E
Sbjct: 350 NPKDPAAVTE 359

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. May play a role in graft rejection (By similarity). May be necessary for the removal of the signal peptide that remains attached to the hepatitis C virus core protein after the initial proteolytic processing of the polyprotein. Involved in the intramembrane cleavage of the integral membrane protein PSEN1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9D8V0|HM13_MOUSE Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 161/366 (43%), Gaps = 77/366 (21%)

Query: 17  TLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLF 76
           +L+L A+   F  A R++       R +  S+    +    A   P+++SC+L+ ++  F
Sbjct: 38  SLLLMALLPIFFGALRSV----RCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFF 93

Query: 77  SSVSQ-----LLTALTAVASVSSLFFCLSPYIAHV------RSQFGLADPFVSRCCSKSL 125
              SQ     LL+    V  + +L   +SP++           Q+ L     S    + +
Sbjct: 94  KIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEI 153

Query: 126 TRIQW----LLLLACTSVVVAW-LVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
              ++    L+ L  +SVV  W L+  HWI NNL G+A  +  V  + L N+    +LL 
Sbjct: 154 INYEFDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLG 213

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
            LF+YDIFWV      FG NVMV+VA                        K  E P+K+V
Sbjct: 214 GLFIYDIFWV------FGTNVMVTVA------------------------KSFEAPIKLV 243

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FP++L   +  G  A +F MLGLGD+ +P + +AL+L FD     NT           H 
Sbjct: 244 FPQDL---LEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNT-----------HT 289

Query: 301 YIWYALPGYAIGL-------------VTALSAGVPSTLGPVIVMSWVRKDLDELWEGTLS 347
           Y + +   Y  GL               AL   VP+ +G  ++++  + ++ E++    S
Sbjct: 290 YFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEES 349

Query: 348 NINDKS 353
           N  D +
Sbjct: 350 NPKDPA 355

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. Involved in the intramembrane cleavage of the integral membrane protein PSEN1 (By similarity). May play a role in graft rejection.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1

 Score =  101 bits (252), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 155/343 (45%), Gaps = 81/343 (23%)

Query: 32  RALNYGKEMERNRDLSEASIMLD--RSQALMIPVMSSCSLVLMFYLFSS-VSQLLTALTA 88
           + L  G+E+  N +   +S M+D   + A+M  V++SC L++++ + SS   +LL  +  
Sbjct: 223 KLLKDGREVLLNVENGSSSGMIDINVASAIMFVVVASCFLIMLYKMMSSWFVELLVVIFC 282

Query: 89  VASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWL-----LLLA----CTSV 139
           V  V  L  CL   +A +   F        R  S+S  ++ +      L LA    C   
Sbjct: 283 VGGVEGLQTCL---VALLSRWF--------RAASESFFKVPFFGAVSYLTLAVSPFCIVF 331

Query: 140 VVAWLVSGH----WILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSER 195
            V W V  H    WI  ++LGIA+ I  +  VR+PN+K+ ++LL C F YDIFWVF S+R
Sbjct: 332 AVLWAVHRHFTYAWIGQDILGIALIITVIQIVRVPNLKVGSVLLSCAFFYDIFWVFVSKR 391

Query: 196 FFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNA 255
           +F  +VM+ VA                       T +  +P+ +  PR       P G  
Sbjct: 392 WFHESVMIVVARGDK-------------------TDEDGVPMLLKIPRMF----DPWGG- 427

Query: 256 TDFMMLGLGDMAMPAMLLALVLCFD--HRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGL 313
             + ++G GD+ +P +L+A  L +D   +KS  T             Y  +++  Y  GL
Sbjct: 428 --YSIIGFGDILLPGLLVAFALRYDWAAKKSLQT------------GYFLWSMVAYGSGL 473

Query: 314 VT--------------ALSAGVPSTLGPVIVMSWVRKDLDELW 342
           +               AL   VP TLG +I + W R +L  LW
Sbjct: 474 LITYVALNLMDGHGQPALLYIVPFTLGALISLGWKRGELWNLW 516

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q53P98|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 76/335 (22%)

Query: 35  NYGKEMERNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLFSS-VSQLLTALTAVASVS 93
           N G     ++++ E S       A++  +++S  L+L+FY  SS    LL  L  +  + 
Sbjct: 237 NSGTTNREDKEIFEIS----AKGAIVFILVASVFLLLLFYFMSSWFVWLLIVLFCIGGIE 292

Query: 94  SLFFCLSPYIAHVRSQFGLAD---PFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGH-- 148
            +  CL   +  +    G      PF     + S+     L++  CT   + W V  H  
Sbjct: 293 GMHVCLVTLLTRICKDCGQKTVQLPFFGEVLTLSV-----LIVPFCTIFAILWAVYRHAS 347

Query: 149 --WILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVA 206
             WI  ++LGI + I  +   RLPNI++ + LL   FVYD+FWVF S   F  +VM++VA
Sbjct: 348 FAWIGQDILGICLMITVLQMARLPNIRVASALLSAAFVYDVFWVFISPLIFHESVMIAVA 407

Query: 207 TQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPR--NLFGGVTPGGNATDFMMLGLG 264
               S                       +P+ +  PR  + +GG         + M+G G
Sbjct: 408 RGDNSGEA--------------------IPMLLRIPRFFDPWGG---------YDMIGFG 438

Query: 265 DMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKG--HKYIWYALPGYAIGLV-------- 314
           D+  P +L+A    F +R        FD  S +G  + Y  +   GYA+GL         
Sbjct: 439 DIIFPGLLVA----FSYR--------FDRASKRGLFNGYFLWLTVGYAVGLFLTYLALFL 486

Query: 315 ------TALSAGVPSTLGPVIVMSWVRKDLDELWE 343
                  AL   VP TLG ++++ W R +L +LW 
Sbjct: 487 MDGHGQPALLYLVPCTLGLIVILGWFRGELHDLWN 521

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P49049|IMP2_CAEEL Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 53/246 (21%)

Query: 124 SLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLF 183
              R   + LL C+ ++++ L+  HWI NN++G++  I  +  + L + K  ++LLV LF
Sbjct: 244 DFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVGLF 303

Query: 184 VYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPR 243
            YDIFWV      FG +VM SVA                        K ++ P+ + FP+
Sbjct: 304 FYDIFWV------FGTDVMTSVA------------------------KGIDAPILLQFPQ 333

Query: 244 NLF-GGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTV-SLFDLHSSKGHKY 301
           +++  G+     A+   MLGLGD+ +P + +AL+  FD+R    T  S     S KG  Y
Sbjct: 334 DIYRNGIM---EASKHSMLGLGDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYY 390

Query: 302 IWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLSN 348
               +  Y  GL   ++               VP  L   ++++ +R +L  LW     N
Sbjct: 391 FVVTVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSALW-----N 445

Query: 349 INDKSH 354
            ++  H
Sbjct: 446 YDESRH 451

May act as intramembrane protease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9JJF9|SPP2A_MOUSE Signal peptide peptidase-like 2A OS=Mus musculus GN=Sppl2a PE=1 SV=2

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 58/303 (19%)

Query: 69  LVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRI 128
           +VL+++ +  +  ++ A+  +AS  SL+ CLS  I   R   G        CC K++   
Sbjct: 238 IVLLYFFYRWLVYVMIAIFCIASSMSLYNCLSALIH--RMPCGQCTIL---CCGKNIKVS 292

Query: 129 QWLLLLACTSVVVAWLVSGH-----WILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLF 183
              L   C SV V W V  +     WIL ++LGIA C+  +  ++LPN   C +LL  L 
Sbjct: 293 LIFLSGLCISVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTMKLPNFMSCVILLGLLL 352

Query: 184 VYDIFWVFFSERFF--GANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVF 241
           +YD+F+VF +      G ++MV +A     N                     +LPV I  
Sbjct: 353 IYDVFFVFITPFITKNGESIMVELAAGPFENAE-------------------KLPVVIRV 393

Query: 242 PRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKY 301
           P+ L G       +    +LG GD+ +P +L+A    FD +  S   S++ + S+     
Sbjct: 394 PK-LMGYSVMSVCSVPVSVLGFGDIIVPGLLIAYCRRFDVQTGS---SIYYISSTI---- 445

Query: 302 IWYALPGYAIGLVT-------------ALSAGVPSTLGPVIVMSWVRKDLDELWEGTLSN 348
                  YA+G++              AL   VP TL  V V++W RK++ + W+G+   
Sbjct: 446 ------AYAVGMIITFVVLMVMKTGQPALLYLVPCTLITVSVVAWSRKEMKKFWKGSSYQ 499

Query: 349 IND 351
           + D
Sbjct: 500 VMD 502

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. Functions in FASLG, ITM2B and TNF processing. Catalyzes the intramembrane cleavage of the anchored fragment of shed TNF-alpha (TNF), which promotes the release of the intracellular domain (ICD) for signaling to the nucleus. Also responsible for the intramembrane cleavage of Fas antigen ligand FASLG, which promotes the release of the intracellular FasL domain (FasL ICD). May play a role in the regulation of innate and adaptive immunity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
255545260	371	D-alanyl-D-alanine endopeptidase, putati	1.0	0.964	0.827	1e-179
224122350	371	predicted protein [Populus trichocarpa]	1.0	0.964	0.819	1e-177
225464481	371	PREDICTED: signal peptide peptidase-like	1.0	0.964	0.824	1e-177
356575974	372	PREDICTED: signal peptide peptidase-like	1.0	0.962	0.822	1e-176
359806994	372	uncharacterized protein LOC100786631 [Gl	1.0	0.962	0.819	1e-175
255640078	372	unknown [Glycine max]	1.0	0.962	0.819	1e-175
357443987	371	Signal peptide peptidase-like protein [M	1.0	0.964	0.805	1e-173
217072870	369	unknown [Medicago truncatula]	0.994	0.964	0.804	1e-172
297802662	372	signal peptide peptidase family protein	1.0	0.962	0.809	1e-171
18418206	372	signal peptide peptidase-like 1 [Arabido	1.0	0.962	0.806	1e-171

>gi|255545260|ref|XP_002513691.1| D-alanyl-D-alanine endopeptidase, putative [Ricinus communis] gi|223547599|gb|EEF49094.1| D-alanyl-D-alanine endopeptidase, putative [Ricinus communis]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 307/371 (82%), Positives = 337/371 (90%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME  WKLLYLLEPAP+TLI+TA+AVTFGSAFRALNYGKEMERNRD+SEASI+LDRSQALM
Sbjct: 1   MESPWKLLYLLEPAPITLIMTALAVTFGSAFRALNYGKEMERNRDMSEASIILDRSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSSCSL+LMFYLFSSVSQLLTA TA+ASVSSLFFCLSPY+A+V+S +GLADPFVSRC
Sbjct: 61  IPVMSSCSLLLMFYLFSSVSQLLTAFTAIASVSSLFFCLSPYVAYVKSHYGLADPFVSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS+TR Q LLLLAC+  V AWLVSGHW+LNNLLGI+IC+AFVSHVRLPNIKICA+LL 
Sbjct: 121 CSKSITRTQGLLLLACSMTVAAWLVSGHWVLNNLLGISICVAFVSHVRLPNIKICAILLA 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GG  PGGNA DFMMLGLGDMA+PAMLLALVLCFD+RKS + VSL DL+SSKGHK
Sbjct: 241 FPRNLLGGAVPGGNARDFMMLGLGDMAIPAMLLALVLCFDYRKSRDPVSLLDLYSSKGHK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYALPGYAIGLVTAL+AG             VPSTLGPVI+ SWVR++L ELWEG++ 
Sbjct: 301 YIWYALPGYAIGLVTALAAGVLTRSPQPALLYLVPSTLGPVIISSWVRRELGELWEGSIQ 360

Query: 348 NINDKSHQIEV 358
           N++DK+ QIEV
Sbjct: 361 NLSDKARQIEV 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122350|ref|XP_002318813.1| predicted protein [Populus trichocarpa] gi|222859486|gb|EEE97033.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/371 (81%), Positives = 334/371 (90%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LWKLLYLLEPAPVTLI+TAVAVTFGSAFRALNYGKEMERN DLSEASI LDRSQALM
Sbjct: 1   METLWKLLYLLEPAPVTLIVTAVAVTFGSAFRALNYGKEMERNLDLSEASITLDRSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IP+MSSCSL+LMFYLFSSVSQ+LTA TA+ASVSSLFFCLSP++A+++S +GLADPFVSRC
Sbjct: 61  IPIMSSCSLLLMFYLFSSVSQILTAFTAIASVSSLFFCLSPFVAYIKSHYGLADPFVSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           C+KS TRI+ LLLL+C+  V AWLVSGHWILNNLLGI+ICIAFVSHVRLPNIKICAMLL 
Sbjct: 121 CAKSFTRIEGLLLLSCSLTVAAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLA 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVF+SERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFYSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNLF    PGGN TDFMMLGLGDMA+PAMLLALVLCFD+RKS + V+L DL+SSKG K
Sbjct: 241 FPRNLFSSTAPGGNTTDFMMLGLGDMAIPAMLLALVLCFDYRKSRDPVNLLDLYSSKGQK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYALPGYAIGLV AL+AG             VPSTLGPVIV+SW R++L ELWEG++S
Sbjct: 301 YIWYALPGYAIGLVIALAAGVLTHSPQPALLYLVPSTLGPVIVVSWFRRELPELWEGSMS 360

Query: 348 NINDKSHQIEV 358
           N+NDK+ QIEV
Sbjct: 361 NVNDKARQIEV 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464481|ref|XP_002268346.1| PREDICTED: signal peptide peptidase-like 3 [Vitis vinifera] gi|147855753|emb|CAN83442.1| hypothetical protein VITISV_018735 [Vitis vinifera] gi|302143848|emb|CBI22709.3| unnamed protein product [Vitis vinifera]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/371 (82%), Positives = 331/371 (89%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           MEPLWKLLYLLEPAPVTL+LTAVAVTFGSA RALNYGKEMERNRDLSEASI LDRSQALM
Sbjct: 1   MEPLWKLLYLLEPAPVTLVLTAVAVTFGSALRALNYGKEMERNRDLSEASITLDRSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IP+MSSCSL+LMFYLFSSVSQLLTA TAVAS SSLFFCLSPY+ +++SQ GL DPFVSRC
Sbjct: 61  IPIMSSCSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYVMYLKSQLGLPDPFVSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ LLLL C+ +V AWLVSGHWILNNLLGI+ICIAFVSHVRL NIKICAMLL 
Sbjct: 121 CSKSFTRIQGLLLLLCSGIVAAWLVSGHWILNNLLGISICIAFVSHVRLQNIKICAMLLA 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNLFGGV PGGN+ DFMMLGLGDMA+PAMLLALVLCFDHRKS ++VS  D+ S+KGHK
Sbjct: 241 FPRNLFGGVVPGGNSADFMMLGLGDMAIPAMLLALVLCFDHRKSRDSVSPLDIPSAKGHK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYAL GYAIGLVTAL+AG             VP+TLGP+I +SW+RK+L ELWEGT+ 
Sbjct: 301 YIWYALSGYAIGLVTALAAGVLTHSPQPALLYLVPATLGPIIFVSWIRKELAELWEGTMP 360

Query: 348 NINDKSHQIEV 358
           + NDK+H  EV
Sbjct: 361 DQNDKAHLTEV 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575974|ref|XP_003556110.1| PREDICTED: signal peptide peptidase-like 3-like [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/371 (82%), Positives = 331/371 (89%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LWKLLYLLEPAPVTLI TAVAVTFG+AFRALNYGKEMERNRD SEASI LDRSQALM
Sbjct: 2   MESLWKLLYLLEPAPVTLITTAVAVTFGAAFRALNYGKEMERNRDFSEASITLDRSQALM 61

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSS SL+LMFYLFSSVSQLLTA TAVAS SSLFFCLSPY A++++QFGLADPFVSRC
Sbjct: 62  IPVMSSFSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYAAYLKAQFGLADPFVSRC 121

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ +LLL C+  V AWLVSGHWILNNLLGI+IC+AFVSHVRLPNIKICAMLL+
Sbjct: 122 CSKSFTRIQAILLLVCSFTVAAWLVSGHWILNNLLGISICVAFVSHVRLPNIKICAMLLL 181

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANS+ LPGLQLITKKLELPVKIV
Sbjct: 182 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSIGLPGLQLITKKLELPVKIV 241

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG NATDFMMLGLGDMA+P MLLALVLCFD+RKS +TV+L +LHSSKGHK
Sbjct: 242 FPRNLLGGVVPGENATDFMMLGLGDMAIPGMLLALVLCFDYRKSRDTVNLLELHSSKGHK 301

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYALPGYAIGLVTAL+AG             VPSTLGPV+V+SW++++L ELWEG   
Sbjct: 302 YIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVVVISWMKRELLELWEGNTP 361

Query: 348 NINDKSHQIEV 358
           N+NDK  +IEV
Sbjct: 362 NLNDKDREIEV 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806994|ref|NP_001241332.1| uncharacterized protein LOC100786631 [Glycine max] gi|255635766|gb|ACU18232.1| unknown [Glycine max]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/371 (81%), Positives = 331/371 (89%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LWKLLYLLEPAPVTLI+TAVAVTFG+AFRALNYGKEME NRDL EASI LDRSQALM
Sbjct: 2   MESLWKLLYLLEPAPVTLIITAVAVTFGAAFRALNYGKEMEHNRDLCEASITLDRSQALM 61

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSS SL+LMFYLFSSVSQLLTA TAVAS SSLFFCLSPY+A++++QFGLADPFVSRC
Sbjct: 62  IPVMSSFSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYVAYLKAQFGLADPFVSRC 121

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TR+Q +LLL C+  V AWLVSGHWILNNLLGI+ICIAFVSHVRLPNIKICAMLLV
Sbjct: 122 CSKSFTRLQAILLLVCSFTVAAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLV 181

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANS+ LPGLQLITKKLELPVKIV
Sbjct: 182 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSIGLPGLQLITKKLELPVKIV 241

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG NA DFMMLGLGDMA+P MLLALVLCFD+RKS +TV+L +LHSSKGHK
Sbjct: 242 FPRNLLGGVVPGENAADFMMLGLGDMAIPGMLLALVLCFDYRKSRDTVNLLELHSSKGHK 301

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYALPGYAIGLVTAL+AG             VPSTLGPV+V+SW++++L ELWEG   
Sbjct: 302 YIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVVVISWMKRELFELWEGNTP 361

Query: 348 NINDKSHQIEV 358
           N+NDK  +IEV
Sbjct: 362 NLNDKDREIEV 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640078|gb|ACU20330.1| unknown [Glycine max]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/371 (81%), Positives = 330/371 (88%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LWKLLYLLEPAPVTLI TAVAVTFG+AFRALNYGKEMERNRD SEASI LDRSQALM
Sbjct: 2   MESLWKLLYLLEPAPVTLITTAVAVTFGAAFRALNYGKEMERNRDFSEASITLDRSQALM 61

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSS SL+LMFYLFSSVSQLLTA TAVAS SSLFFCLSPY A++++QFGLADPFVSRC
Sbjct: 62  IPVMSSFSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYAAYLKAQFGLADPFVSRC 121

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ +LLL C+  V AWLVSGHWILNNLLGI+IC+AFVSHVRLPNIKICAMLL+
Sbjct: 122 CSKSFTRIQAILLLVCSFTVAAWLVSGHWILNNLLGISICVAFVSHVRLPNIKICAMLLL 181

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANS+ LPGLQLITKKLELPVKIV
Sbjct: 182 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSIGLPGLQLITKKLELPVKIV 241

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG NATDFMMLGLGDMA+P M LALVLCFD+RKS +TV+L +LHSSKGHK
Sbjct: 242 FPRNLLGGVVPGENATDFMMLGLGDMAIPGMPLALVLCFDYRKSRDTVNLLELHSSKGHK 301

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYALPGYAIGLVTAL+AG             VPSTLGPV+V+SW++++L ELWEG   
Sbjct: 302 YIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVVVISWMKRELLELWEGNTP 361

Query: 348 NINDKSHQIEV 358
           N+NDK  +IEV
Sbjct: 362 NLNDKDREIEV 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443987|ref|XP_003592271.1| Signal peptide peptidase-like protein [Medicago truncatula] gi|355481319|gb|AES62522.1| Signal peptide peptidase-like protein [Medicago truncatula]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/371 (80%), Positives = 329/371 (88%), Gaps = 13/371 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LWKL+YLLEPAPVTLI TAVAVTFG+AFRALNYGKEMERN  +SEASI LDRSQALM
Sbjct: 1   MESLWKLVYLLEPAPVTLIATAVAVTFGAAFRALNYGKEMERNHHMSEASITLDRSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSS SLVLMFYLFSSVSQ LTA TA+A+ SSLFF LSPY A+++SQFGLADP+VSRC
Sbjct: 61  IPVMSSFSLVLMFYLFSSVSQFLTAFTAIAAASSLFFVLSPYAAYLKSQFGLADPYVSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ +LL  CT  VVAWLVSGHWILNNLLGI+ICIAFVSHVRLPNIKICAMLL+
Sbjct: 121 CSKSFTRIQAMLLFTCTFTVVAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLL 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVF+SERFFGANVMVSVATQQASNP+HTVANSLSLPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFYSERFFGANVMVSVATQQASNPMHTVANSLSLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG +A+DFMMLGLGDMA+P MLLALVLCFD+RKS +T++L DLHSSKGHK
Sbjct: 241 FPRNLLGGVVPGQSASDFMMLGLGDMAIPGMLLALVLCFDYRKSRDTINLTDLHSSKGHK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYALPGYAIGLVTAL+AG             VPSTLGPVIV+SW++ +L ELWEG + 
Sbjct: 301 YIWYALPGYAIGLVTALAAGVLSHSPQPALLYLVPSTLGPVIVISWMKNELLELWEGNIP 360

Query: 348 NINDKSHQIEV 358
           N+NDK  ++EV
Sbjct: 361 NVNDKDREVEV 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072870|gb|ACJ84795.1| unknown [Medicago truncatula]

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/369 (80%), Positives = 326/369 (88%), Gaps = 13/369 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LWKL+YLLEPAPVTLI TAVAVTFG+AFRALNYGKEMERN  +SEASI LDRSQALM
Sbjct: 1   MESLWKLVYLLEPAPVTLIATAVAVTFGAAFRALNYGKEMERNHHMSEASITLDRSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSS SLVLMFYLFSSVSQ LTA TA+A+ SSLFF LSPY A+++SQFGLADP+VSRC
Sbjct: 61  IPVMSSFSLVLMFYLFSSVSQFLTAFTAIAAASSLFFVLSPYAAYLKSQFGLADPYVSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ +LL  CT  VVAWLVSGHWILNNLLGI+ICIAFVSHVRLPNIKICAMLL+
Sbjct: 121 CSKSFTRIQAMLLFTCTFTVVAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLL 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVF+SERFFGANVMVSVATQQASNP HTVANSLSLPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFYSERFFGANVMVSVATQQASNPTHTVANSLSLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG +A+DFMMLGLGDMA+P MLLALVLCFD+RKS +T++L DLHSSKGHK
Sbjct: 241 FPRNLLGGVVPGQSASDFMMLGLGDMAIPGMLLALVLCFDYRKSRDTINLTDLHSSKGHK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLS 347
           YIWYALPGYAIGLVTAL+AG             VPSTLGPVIV+SW++ +L ELWEG + 
Sbjct: 301 YIWYALPGYAIGLVTALAAGVLSHSPQPALLYLVPSTLGPVIVISWMKNELLELWEGNIP 360

Query: 348 NINDKSHQI 356
           N+NDK  ++
Sbjct: 361 NVNDKDREV 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802662|ref|XP_002869215.1| signal peptide peptidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315051|gb|EFH45474.1| signal peptide peptidase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/372 (80%), Positives = 327/372 (87%), Gaps = 14/372 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LW LLYLLEPAP TLI+TAV VTF SAFRALNYGKEMERNRD SEASI LD SQALM
Sbjct: 1   METLWTLLYLLEPAPATLIVTAVTVTFASAFRALNYGKEMERNRDFSEASITLDSSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSSCSL+LMFYLFSSVSQLLTA TA+ASVSSLF+ LSPY  ++++Q GL+DPFVSRC
Sbjct: 61  IPVMSSCSLLLMFYLFSSVSQLLTAFTAIASVSSLFYWLSPYALYMKTQLGLSDPFVSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ LLL+AC   VVAWL+SGHW+LNNLLGI+ICIAFVSHVRLPNIKICAMLLV
Sbjct: 121 CSKSFTRIQGLLLVACAMTVVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLV 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMV+VATQQASNPVHTVANSL+LPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFFSERFFGANVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG +A+DFMMLGLGDMA+PAMLLALVLCFDHRK+ + V++FDL SSKGHK
Sbjct: 241 FPRNLLGGVVPGVSASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDLKSSKGHK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEG-TL 346
           YIWYALPGYAIGLV AL+AG             VPSTLGPVI MSW RKDL ELWEG  L
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFMSWRRKDLAELWEGPAL 360

Query: 347 SNINDKSHQIEV 358
           SN  +KSH+IE+
Sbjct: 361 SNPIEKSHEIEI 372

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418206|ref|NP_567918.1| signal peptide peptidase-like 1 [Arabidopsis thaliana] gi|75163698|sp|Q93Z32.1|SIPL1_ARATH RecName: Full=Signal peptide peptidase-like 1; Short=AtSPPL1 gi|16648809|gb|AAL25595.1| AT4g33410/F17M5_170 [Arabidopsis thaliana] gi|23308167|gb|AAN18053.1| At4g33410/F17M5_170 [Arabidopsis thaliana] gi|195604860|gb|ACG24260.1| signal peptide peptidase-like 3 [Zea mays] gi|332660821|gb|AEE86221.1| signal peptide peptidase-like 1 [Arabidopsis thaliana]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/372 (80%), Positives = 327/372 (87%), Gaps = 14/372 (3%)

Query: 1   MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
           ME LW LLYLLEPAP TLI+TAV VTF SAFRALNYGKEMERNRD SEASI LD SQALM
Sbjct: 1   METLWTLLYLLEPAPATLIVTAVTVTFASAFRALNYGKEMERNRDFSEASITLDSSQALM 60

Query: 61  IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
           IPVMSSCSL+LMFYLFSSVSQLLTA TA+ASVSSLF+ LSPY  ++++Q GL+DPF+SRC
Sbjct: 61  IPVMSSCSLLLMFYLFSSVSQLLTAFTAIASVSSLFYWLSPYAVYMKTQLGLSDPFLSRC 120

Query: 121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
           CSKS TRIQ LLL+AC   VVAWL+SGHW+LNNLLGI+ICIAFVSHVRLPNIKICAMLLV
Sbjct: 121 CSKSFTRIQGLLLVACAMTVVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLV 180

Query: 181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
           CLFVYDIFWVFFSERFFGANVMV+VATQQASNPVHTVANSL+LPGLQLITKKLELPVKIV
Sbjct: 181 CLFVYDIFWVFFSERFFGANVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIV 240

Query: 241 FPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHK 300
           FPRNL GGV PG +A+DFMMLGLGDMA+PAMLLALVLCFDHRK+ + V++FDL SSKGHK
Sbjct: 241 FPRNLLGGVVPGVSASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDLKSSKGHK 300

Query: 301 YIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEG-TL 346
           YIWYALPGYAIGLV AL+AG             VPSTLGPVI MSW RKDL ELWEG  L
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFMSWRRKDLAELWEGPAL 360

Query: 347 SNINDKSHQIEV 358
           SN  +KSH+IE+
Sbjct: 361 SNPIEKSHEIEI 372

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2119236	372	SPPL1 "SIGNAL PEPTIDE PEPTIDAS	1.0	0.962	0.763	3.5e-146
UNIPROTKB|E2RHX3	417	SPPL3 "Uncharacterized protein	0.527	0.453	0.371	1.8e-41
RGD|1562826	384	Sppl3 "signal peptide peptidas	0.670	0.625	0.341	6.6e-41
FB|FBgn0039381	422	SppL "Signal peptide peptidase	0.871	0.739	0.314	7.4e-40
ZFIN|ZDB-GENE-050913-71	382	sppl3 "signal peptide peptidas	0.645	0.604	0.349	7.4e-40
UNIPROTKB|J9P8J7	384	SPPL3 "Uncharacterized protein	0.645	0.601	0.342	1.2e-39
UNIPROTKB|E1C173	384	LOC416968 "Uncharacterized pro	0.645	0.601	0.342	1.5e-39
UNIPROTKB|F1N419	384	SPPL3 "Uncharacterized protein	0.645	0.601	0.334	1.5e-39
MGI|MGI:1891433	384	Sppl3 "signal peptide peptidas	0.645	0.601	0.334	1.5e-39
UNIPROTKB|G3MWR0	385	SPPL3 "Uncharacterized protein	0.645	0.6	0.333	2.5e-39

TAIR|locus:2119236 SPPL1 "SIGNAL PEPTIDE PEPTIDASE-LIKE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 284/372 (76%), Positives = 310/372 (83%)

Query:     1 MEPLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM 60
             ME LW LLYLLEPAP TLI+TAV VTF SAFRALNYGKEMERNRD SEASI LD SQALM
Sbjct:     1 METLWTLLYLLEPAPATLIVTAVTVTFASAFRALNYGKEMERNRDFSEASITLDSSQALM 60

Query:    61 IPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRC 120
             IPVMSSCSL+LMFYLFSSVSQLLTA TA+ASVSSLF+ LSPY  ++++Q GL+DPF+SRC
Sbjct:    61 IPVMSSCSLLLMFYLFSSVSQLLTAFTAIASVSSLFYWLSPYAVYMKTQLGLSDPFLSRC 120

Query:   121 CSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLV 180
             CSKS TRIQ LLL+AC   VVAWL+SGHW+LNNLLGI+ICIAFVSHVRLPNIKICAMLLV
Sbjct:   121 CSKSFTRIQGLLLVACAMTVVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLV 180

Query:   181 CLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIV 240
             CLFVYDIFWVFFSERFFGANVMV+VATQQASNPVHTVANSL+LPGLQLITKKLELPVKIV
Sbjct:   181 CLFVYDIFWVFFSERFFGANVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIV 240

Query:   241 FPRNLFGGVTPGGNATDFXXXXXXXXXXXXXXXXXVLCFDHRKSSNTVSLFDLHSSKGHK 300
             FPRNL GGV PG +A+DF                 VLCFDHRK+ + V++FDL SSKGHK
Sbjct:   241 FPRNLLGGVVPGVSASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDLKSSKGHK 300

Query:   301 YIWYALPGYAIGLVTALSAGV-------------PSTLGPVIVMSWVRKDLDELWEG-TL 346
             YIWYALPGYAIGLV AL+AGV             PSTLGPVI MSW RKDL ELWEG  L
Sbjct:   301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFMSWRRKDLAELWEGPAL 360

Query:   347 SNINDKSHQIEV 358
             SN  +KSH+IE+
Sbjct:   361 SNPIEKSHEIEI 372

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|E2RHX3 SPPL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 358 (131.1 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
 Identities = 71/191 (37%), Positives = 112/191 (58%)

Query:    53 LDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGL 112
             +D +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   ++      
Sbjct:   100 IDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSP 159

Query:   113 ADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNI 172
              +     CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++
Sbjct:   160 QNKISFGCCGR-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSL 218

Query:   173 KICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITK 231
             K+  +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     
Sbjct:   219 KVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVP 278

Query:   232 KLELPVKIVFP 242
             +L LP K+VFP
Sbjct:   279 RLSLPGKLVFP 289

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

RGD|1562826 Sppl3 "signal peptide peptidase like 3" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
 Identities = 88/258 (34%), Positives = 147/258 (56%)

Query:     1 MEPLWKLLY-LLEPAPV-TLILTAVAVTFGSAFRALNYGKE-MERNRDLSEAS------- 50
             M+ ++K+ Y L++ + V T +++ + + +GS FR+LN   E  ++ +D S +S       
Sbjct:     2 MQCVYKMAYSLVDSSQVSTFLISILLIVYGS-FRSLNMDFENQDKEKDSSSSSGPFNGSS 60

Query:    51 ----IM-LDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAH 105
                 I  +D +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   +
Sbjct:    61 TNNSIQTIDSTQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQY 120

Query:   106 VRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVS 165
             +       +     CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++
Sbjct:   121 LTRPCSPQNKISFGCCGR-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIA 179

Query:   166 HVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-P 224
              VRLP++K+  +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P
Sbjct:   180 FVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGP 239

Query:   225 GLQLITKKLELPVKIVFP 242
              +     +L LP K+VFP
Sbjct:   240 NVGRDVPRLSLPGKLVFP 257

GO:0005791 "rough endoplasmic reticulum" evidence=IEA;ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA;ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO

FB|FBgn0039381 SppL "Signal peptide peptidase-like" [Drosophila melanogaster (taxid:7227)]

 Score = 394 (143.8 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 108/343 (31%), Positives = 168/343 (48%)

Query:    37 GKEMERNRDL---SEASIMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVS 93
             G+ +E+  +L   ++    LD   AL +P+ +S SL++MF+ F S+  L    TA+ +  
Sbjct:    90 GEPVEKEPNLYFTADKFATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATV 149

Query:    94 SLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNN 153
             +L F L P   ++         F    C +  T  +        S+V  W+++GHW+L +
Sbjct:   150 ALAFLLLPMCQYIIRPCTDGKRFSFGFCGR-FTAAELFSFTLSVSIVCIWVLTGHWLLMD 208

Query:   154 LLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNP 213
              +G+ +C+AF++ VRLP++K+  +LL  L +YD+FWVF S   F  NVMV VAT+ A NP
Sbjct:   209 AMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSYIFSTNVMVKVATRPADNP 268

Query:   214 VHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFXXXXXXXXXXXXXXX 273
             V  VA  L L G+   T KL LP K+VFP +L        N   F               
Sbjct:   269 VGIVARKLHLGGIVRDTPKLNLPGKLVFP-SLH-------NTGHFSMLGLGDVVMPGLLL 320

Query:   274 XXVLCFD-HRKSSNTVSLFDLHSSKGH----KYIWYALPGYAIGLVTALSAG-------- 320
               VL +D ++K+    S   L   +G      Y   +L GY +GL+TA  +         
Sbjct:   321 CFVLRYDAYKKAQGVTSDPTLSPPRGVGSRLTYFHCSLLGYFLGLLTATVSSEVFKAAQP 380

Query:   321 -----VPSTLGPVIVMSWVRKDLDELWEGTLSNINDKSHQIEV 358
                  VP TL P+++M++++ DL  +W          S Q+EV
Sbjct:   381 ALLYLVPFTLLPLLLMAYLKGDLRRMWSEPFI-AQQPSKQLEV 422

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IDA

GO:0006465 "signal peptide processing" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-050913-71 sppl3 "signal peptide peptidase 3" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 87/249 (34%), Positives = 141/249 (56%)

Query:    10 LLEPAPV-TLILTAVAVTFGSAFRALNYGKE-MERNRD------------LSEASIM-LD 54
             L++ + V T +++ + + +GS FR+LN   E  E+++D             S  SI  +D
Sbjct:    12 LVDSSQVSTFLISILLIVYGS-FRSLNMDCENQEKDKDGNPTASGSFNNANSNNSIQTID 70

Query:    55 RSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLAD 114
              +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   ++       +
Sbjct:    71 STQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQN 130

Query:   115 PFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKI 174
                  CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+
Sbjct:   131 KISFGCCGR-FTLAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKV 189

Query:   175 CAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKL 233
               +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L PG+     +L
Sbjct:   190 SCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPGMGRDVPRL 249

Query:   234 ELPVKIVFP 242
              LP K+VFP
Sbjct:   250 SLPGKLVFP 258

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISS

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISS

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISS

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

UNIPROTKB|J9P8J7 SPPL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 372 (136.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 85/248 (34%), Positives = 140/248 (56%)

Query:    10 LLEPAPV-TLILTAVAVTFGSAFRALNYGKE-MERNRDLSEAS-----------IM-LDR 55
             L++ + V T +++ + + +GS FR+LN   E  ++ +D S +S           I  +D 
Sbjct:    12 LVDSSQVSTFLISILLIVYGS-FRSLNMDFENQDKEKDNSSSSGSFNGNSTNNSIQTIDS 70

Query:    56 SQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADP 115
             +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   ++       + 
Sbjct:    71 TQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNK 130

Query:   116 FVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKIC 175
                 CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+ 
Sbjct:   131 ISFGCCGR-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:   176 AMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKLE 234
              +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     +L 
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   235 LPVKIVFP 242
             LP K+VFP
Sbjct:   250 LPGKLVFP 257

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|E1C173 LOC416968 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 371 (135.7 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 85/248 (34%), Positives = 139/248 (56%)

Query:    10 LLEPAPV-TLILTAVAVTFGSAFRALNYGKE-MERNRDLSEA-----------SIM-LDR 55
             L++ + V T +++ + + +GS FR+LN   E  ++ +D S             SI  +D 
Sbjct:    12 LVDSSQVSTFLISILLIVYGS-FRSLNMDFENQDKEKDNSSTAGSFNGNSTNNSIQTIDS 70

Query:    56 SQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADP 115
             +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   ++       + 
Sbjct:    71 TQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNK 130

Query:   116 FVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKIC 175
                 CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+ 
Sbjct:   131 ISFGCCGR-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:   176 AMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKLE 234
              +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     +L 
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   235 LPVKIVFP 242
             LP K+VFP
Sbjct:   250 LPGKLVFP 257

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F1N419 SPPL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 371 (135.7 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 83/248 (33%), Positives = 139/248 (56%)

Query:    10 LLEPAPV-TLILTAVAVTFGSAFRALNY---GKEMERNRDLSEASI----------MLDR 55
             L++ + V T +++ + + +GS FR+LN     ++ E++ + S  S            +D 
Sbjct:    12 LVDSSQVSTFLISILLIVYGS-FRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDS 70

Query:    56 SQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADP 115
             +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   ++       + 
Sbjct:    71 TQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNK 130

Query:   116 FVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKIC 175
                 CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+ 
Sbjct:   131 ISFGCCGR-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:   176 AMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKLE 234
              +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     +L 
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   235 LPVKIVFP 242
             LP K+VFP
Sbjct:   250 LPGKLVFP 257

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

MGI|MGI:1891433 Sppl3 "signal peptide peptidase 3" [Mus musculus (taxid:10090)]

 Score = 371 (135.7 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 83/248 (33%), Positives = 139/248 (56%)

Query:    10 LLEPAPV-TLILTAVAVTFGSAFRALNY---GKEMERNRDLSEASI----------MLDR 55
             L++ + V T +++ + + +GS FR+LN     ++ E++ + S  S            +D 
Sbjct:    12 LVDSSQVSTFLISILLIVYGS-FRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDS 70

Query:    56 SQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADP 115
             +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   ++       + 
Sbjct:    71 TQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQNK 130

Query:   116 FVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKIC 175
                 CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+ 
Sbjct:   131 ISFGCCGR-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVS 189

Query:   176 AMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKLE 234
              +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     +L 
Sbjct:   190 CLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRLS 249

Query:   235 LPVKIVFP 242
             LP K+VFP
Sbjct:   250 LPGKLVFP 257

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0008233 "peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

UNIPROTKB|G3MWR0 SPPL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 83/249 (33%), Positives = 139/249 (55%)

Query:    10 LLEPAPV-TLILTAVAVTFGSAFRALNY---GKEMERNRDLSEASI-----------MLD 54
             L++ + V T +++ + + +GS FR+LN     ++ E++ + S  S             +D
Sbjct:    12 LVDSSQVSTFLISILLIVYGS-FRSLNMDFENQDKEKDSNSSSGSFNGNSTNNKGIQTID 70

Query:    55 RSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLAD 114
              +QAL +P+ +S SL++MF+ F SV  + T  TAV +  +  F L P   ++       +
Sbjct:    71 STQALFLPIGASVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCSPQN 130

Query:   115 PFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSGHWILNNLLGIAICIAFVSHVRLPNIKI 174
                  CC +  T  + L       +V+ W+++GHW+L + L + +C+A ++ VRLP++K+
Sbjct:   131 KISFGCCGR-FTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKV 189

Query:   175 CAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSL-PGLQLITKKL 233
               +LL  L +YD+FWVFFS   F +NVMV VATQ A NP+  ++  L L P +     +L
Sbjct:   190 SCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPRL 249

Query:   234 ELPVKIVFP 242
              LP K+VFP
Sbjct:   250 SLPGKLVFP 258

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IEA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CUS9	SPPL3_MOUSE	3, ., 4, ., 2, 3, ., -	0.3164	0.9245	0.8619	yes	no
Q8TCT6	SPPL3_HUMAN	3, ., 4, ., 2, 3, ., -	0.3050	0.9245	0.8597	yes	no
Q93Z32	SIPL1_ARATH	3, ., 4, ., 2, 3, ., -	0.8064	1.0	0.9623	yes	no
Q7G7C7	SIPL1_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7169	1.0	0.9649	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	2e-54
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	5e-28

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  180 bits (458), Expect = 2e-54
 Identities = 97/318 (30%), Positives = 145/318 (45%), Gaps = 60/318 (18%)

Query: 51  IMLDRSQALMIPVMSSCSLVLMFYLFSSVSQ-------LLTALTAVASVSSLFFCLSPYI 103
             +D   A++ P+ +SC+L+ ++  F S+S+       +LT    +    +L F + P  
Sbjct: 7   GTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLILPPC 66

Query: 104 AHVRSQFGLA----DPFVSRCCSKSLTRIQWLLLLACTSVVVAWLV--SGHWILNNLLGI 157
               S  G              +   T  + + LL C    V W V    HWIL ++LGI
Sbjct: 67  IRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEHWILQDILGI 126

Query: 158 AICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTV 217
           A+CI  +  +RLPN+K+  +LL  LF YDIFWVF S   FG +VMV+VAT          
Sbjct: 127 ALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAE--- 183

Query: 218 ANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVL 277
                           +LP+K+VFPR        G     F MLGLGD+ MP +L+A  L
Sbjct: 184 ----------------KLPMKLVFPRLNDYPGNWGP----FSMLGLGDIVMPGLLIAFCL 223

Query: 278 CFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVT-------------ALSAGVPST 324
            FD  K+ ++ + F          I   +  Y +GL+              AL   VP T
Sbjct: 224 RFDISKNKSSRTYF----------IS-TMIAYGLGLLITFVALNLFKAAQPALLYLVPCT 272

Query: 325 LGPVIVMSWVRKDLDELW 342
           LG +++++  R +L +LW
Sbjct: 273 LGTLLLVALWRGELKKLW 290

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  109 bits (275), Expect = 5e-28
 Identities = 72/293 (24%), Positives = 109/293 (37%), Gaps = 68/293 (23%)

Query: 58  ALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFV 117
           A++ P++++  LVL++  F  +  +L    +   V  L+  L P          L     
Sbjct: 10  AIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFRVDYPTL----- 64

Query: 118 SRCCSKSLTRIQWLLLLACTSVVVAWLV--SGHWILNNLLGIAICIAFVSHVRLPNIKIC 175
                        L+LL   +VV  W +   G WI  +L+GI++C+A +  +RLP+    
Sbjct: 65  -------------LILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTA 111

Query: 176 AMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLEL 235
            +LL  LF+YDIF VF +       VMV VAT +                          
Sbjct: 112 WILLGALFIYDIFAVFGTP--GPLRVMVEVATGRDEPI-------------------KVF 150

Query: 236 PVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHS 295
           P  +  PR              F MLGLGD+  P +L+A                FD+  
Sbjct: 151 PALLYVPR--LVVSFEDDEEERFSMLGLGDIVFPGILVASAA------------RFDVSV 196

Query: 296 SKGHKYIWYALPGYAIGLVT-------------ALSAGVPSTLGPVIVMSWVR 335
                Y       Y IGL+              AL   VP TL   ++ + +R
Sbjct: 197 RSDSNYFLACFVAYGIGLILTLVLLALFKKAQPALPYLVPFTLVFYLLTALLR 249

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG2443	362	consensus Uncharacterized conserved protein [Funct	100.0
KOG2442	541	consensus Uncharacterized conserved protein, conta	100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	100.0
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	98.97
COG3389	277	Uncharacterized protein conserved in archaea [Func	98.14
KOG2736	406	consensus Presenilin [Signal transduction mechanis	84.11

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.3e-75  Score=562.18  Aligned_cols=311  Identities=41%  Similarity=0.686  Sum_probs=271.3

Q ss_pred             hhhHHHHhhccchHHHHHHHHHHHhhhcchhhccchhhhhhccccccccccCccceeh-hhHHHHHHHHHHHHHHHHHH-
Q 018319            3 PLWKLLYLLEPAPVTLILTAVAVTFGSAFRALNYGKEMERNRDLSEASIMLDRSQALM-IPVMSSCSLVLMFYLFSSVS-   80 (358)
Q Consensus         3 ~~~~~~~~~~p~~~~l~~~a~~~i~~gs~rsl~~~~~~~~~~~~~e~~~~l~~~~A~~-FPv~aS~~Ll~Lyy~f~~v~-   80 (358)
                      +.|..-++++++++.++++|+++|++||+||++.++++|++||   .+++++.+||.. ||++|||+|+++|++|+.+. 
T Consensus        15 ~~~~~~~~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~~d~~~---~~es~t~~~a~~~fPi~~s~tLl~lyl~fk~ls~   91 (362)
T KOG2443|consen   15 THWTTSELLASAYVSLILIALLLIVIGSFRSLNYIKENEDKKD---KSESITKRDAGKMFPIIGSCTLLLLYLLFKPLSK   91 (362)
T ss_pred             CcccchhhhcccchHHHHHHHHHHHHHHHHHhhhhhhhhcccc---hhhhhhhhhhcccCCcccchHHHHHHHHHHHHHH
Confidence            3588889999999999999999999999999999887766653   345789999987 99999999999999999764 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhhh----cccCC-----CCc--ccccccCCccchHHHHHHHHHHHHHHHHHhh
Q 018319           81 ---QLLTALTAVASVSSLFFCLSPYIAHVR----SQFGL-----ADP--FVSRCCSKSLTRIQWLLLLACTSVVVAWLVS  146 (358)
Q Consensus        81 ---~ll~~~~~i~g~~al~~~l~p~~~~~~----~~~~~-----~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~  146 (358)
                         .+++.||++.|+.++...+.|+.+...    +.++.     +.+  ..+.++..+||+.+++++..|..++++|+.+
T Consensus        92 ~~~~ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~~i~v~~ll~  171 (362)
T KOG2443|consen   92 ELINLLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPGEKKEFICNGKFTRAQIVALVLSSMIVVWYLLT  171 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCCcccceeecccccHHHHHHHHHHHHHHHHHHhh
Confidence               367899999999999999999998322    11110     000  0234567899999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHhcccCcHhHHHHHHHHHHHHhhhhhhccccccCcceeeeeeccCCCCCcccccccCCCCcc
Q 018319          147 GHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGL  226 (358)
Q Consensus       147 ~~Wil~Nilgi~~~i~~i~~l~l~s~k~~~iLL~~lf~YDIFwVF~tp~~fg~sVMvtVAtg~~~~~~~~~~~~~~~p~~  226 (358)
                      +||++||++|+++|+++|+.+|+||+|+|++||.|||+|||||||      ||||||||||                   
T Consensus       172 ~HWl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVF------gTnVMVtVAt-------------------  226 (362)
T KOG2443|consen  172 KHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVF------GTNVMVTVAT-------------------  226 (362)
T ss_pred             hHHHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEe------cCceEEEeec-------------------
Confidence            999999999999999999999999999999999999999999997      5689999996                   


Q ss_pred             cccccCcCCCEEEEecccCCCCCCCCCCCCccccccccchhhHHHHHHHHHHhhhccccCcccccccCCCCCcchhhhhh
Q 018319          227 QLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYAL  306 (358)
Q Consensus       227 ~~~~~~~~~PikL~~P~~~~~~~~~~~~~~~~SmLGLGDIViPGl~ia~~lrfD~~~~~~~~~~~~~~~~~~~~YF~~s~  306 (358)
                           ++|+|+||+||+.....   +..+.+||||||||||+||+|+|+++|||.+++++         ++++.||+.++
T Consensus       227 -----~~D~PikL~fP~~l~~~---~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~---------s~~~~YF~~t~  289 (362)
T KOG2443|consen  227 -----SLDAPIKLVFPQKLLFP---GLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRN---------SKVRTYFHNTF  289 (362)
T ss_pred             -----ccCCceEEecchhhccC---CCccccceeccccchhhHHHHHHHHHHhhHHHHhc---------ccCceEEEEeH
Confidence                 58999999999987542   22266899999999999999999999999988653         24578999999


Q ss_pred             HHHHHHHHHHHHhc-------------CCcccHHHHHHHHHHhhHHHhhcCCCCcCCCCcccccC
Q 018319          307 PGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLSNINDKSHQIEV  358 (358)
Q Consensus       307 igY~~GL~~T~~a~-------------VP~~L~~~~~~A~~RgEl~~lW~~~~~~~~d~~~~~~~  358 (358)
                      +||.+||+.|++++             ||+|+++.+++|++|||+|++|+++++...|+++++|+
T Consensus       290 i~Y~~gL~~ti~~~~~FkaAQPALLYlVP~~l~~~ll~A~~~gdlk~l~s~~~~~~~~~~~~~e~  354 (362)
T KOG2443|consen  290 IAYFLGLLTTIVVLHIFKAAQPALLYLVPACLGPLLLMAYWRGDLKVLWSFDESTKEESAEQDEV  354 (362)
T ss_pred             HHHHhhhHHHhhhhhhhhccchhhhhhhHHHHhHHHHHHHHccchHhhhCccccCCCCcHHHHhh
Confidence            99999999999864             99999999999999999999999999888888888874

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=100.00  E-value=3.2e-64  Score=500.04  Aligned_cols=302  Identities=29%  Similarity=0.539  Sum_probs=256.3

Q ss_pred             chHHHHHHHHHHHhhhcchhh-ccchhh-h--------------hhccccccccccCccceehhhHHHHHHHHHHHHHHH
Q 018319           14 APVTLILTAVAVTFGSAFRAL-NYGKEM-E--------------RNRDLSEASIMLDRSQALMIPVMSSCSLVLMFYLFS   77 (358)
Q Consensus        14 ~~~~l~~~a~~~i~~gs~rsl-~~~~~~-~--------------~~~~~~e~~~~l~~~~A~~FPv~aS~~Ll~Lyy~f~   77 (358)
                      +.+-+.++|+..|..|++=|- ++.++. |              ++|+.+|+..++++-.|..|.+.+|.+|+.+|||.+
T Consensus       186 ~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~~c~~LvLlyfF~~  265 (541)
T KOG2442|consen  186 AMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVTACGFLVLLYFFYS  265 (541)
T ss_pred             HHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhhhHHHHHHHHHHHH
Confidence            345689999999988888553 221111 1              012345667789999999999999999999999989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCccchHHHHHHHHHHHHHHHHHhhc----hhhhhh
Q 018319           78 SVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLLACTSVVVAWLVSG----HWILNN  153 (358)
Q Consensus        78 ~v~~ll~~~~~i~g~~al~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~----~Wil~N  153 (358)
                      ++.++++++||+.|+.++++|+.|+++++..+  ..++....+..++.+...+++..+|+++++.|.+.|    +|++||
T Consensus       266 ~~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~--~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~v~R~e~~AwilqD  343 (541)
T KOG2442|consen  266 YLVYVLIIIFCIGGAQGLYNCLAALVHRLPYG--AARFPTLAPRLGNMSYRLLFLSILCIAVAVVWAVFRNEDWAWILQD  343 (541)
T ss_pred             HHHHHHhhheeecccchHHHHHHHHHhhhhhh--cccccccccccCChhHHHHHHHHhhhheeEEEEEeecCchHHHHHh
Confidence            99999999999999999999999999987653  222222233456778889999999999999998764    699999


Q ss_pred             HHHHHHHHHHHHhcccCcHhHHHHHHHHHHHHhhhhhhcccccc--CcceeeeeeccCCCCCcccccccCCCCccccccc
Q 018319          154 LLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFF--GANVMVSVATQQASNPVHTVANSLSLPGLQLITK  231 (358)
Q Consensus       154 ilgi~~~i~~i~~l~l~s~k~~~iLL~~lf~YDIFwVF~tp~~f--g~sVMvtVAtg~~~~~~~~~~~~~~~p~~~~~~~  231 (358)
                      ++|||+|++.++.+|+||+|++++||.++|+|||||||+||++|  |+|||++||+|+.++                   
T Consensus       344 vLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~-------------------  404 (541)
T KOG2442|consen  344 VLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSST-------------------  404 (541)
T ss_pred             hHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCC-------------------
Confidence            99999999999999999999999999999999999999999998  699999999998665                   


Q ss_pred             CcCCCEEEEecccCCCCCCCCCCCCccccccccchhhHHHHHHHHHHhhhccccCcccccccCCCCCcchhhhhhHHHHH
Q 018319          232 KLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAI  311 (358)
Q Consensus       232 ~~~~PikL~~P~~~~~~~~~~~~~~~~SmLGLGDIViPGl~ia~~lrfD~~~~~~~~~~~~~~~~~~~~YF~~s~igY~~  311 (358)
                      .+.+||.|++||.....  ..+++++|||||+|||++||++||||+|||....           +.++.||.++++||++
T Consensus       405 ~EkiPMlLkVPrl~~s~--~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~-----------~~~~iYfv~~tvaYgi  471 (541)
T KOG2442|consen  405 EEKIPMLLKVPRLFFSV--LSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVN-----------SVSNIYFVWSTVAYGI  471 (541)
T ss_pred             CCCcceEEEcchhcccc--ccccCCCeeEeeecccccchHHHHHHHHhhhhcc-----------ccceeEEehhHHHHHH
Confidence            46899999999997321  2367899999999999999999999999998753           2267999999999999


Q ss_pred             HHHHHHHhc-------------CCcccHHHHHHHHHHhhHHHhhcCCCCcC
Q 018319          312 GLVTALSAG-------------VPSTLGPVIVMSWVRKDLDELWEGTLSNI  349 (358)
Q Consensus       312 GL~~T~~a~-------------VP~~L~~~~~~A~~RgEl~~lW~~~~~~~  349 (358)
                      ||++|+.|+             |||||++....|++|||++++|+|..++.
T Consensus       472 GLlvTfvaL~LM~~GQPALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~  522 (541)
T KOG2442|consen  472 GLLVTFVALVLMKGGQPALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQK  522 (541)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEechHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999873             99999999999999999999999988765

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=5.3e-64  Score=486.39  Aligned_cols=261  Identities=37%  Similarity=0.726  Sum_probs=0.9

Q ss_pred             ccccCccceehhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CCCccc--
Q 018319           50 SIMLDRSQALMIPVMSSCSLVLMFYLFSSVS-------QLLTALTAVASVSSLFFCLSPYIAHVRSQFG---LADPFV--  117 (358)
Q Consensus        50 ~~~l~~~~A~~FPv~aS~~Ll~Lyy~f~~v~-------~ll~~~~~i~g~~al~~~l~p~~~~~~~~~~---~~~~~~--  117 (358)
                      .+++|++||++||++|||+|+++||+++++.       .+++.|++++|+.++..++.|.+.+..+..+   ......  
T Consensus         5 ~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~~~~   84 (298)
T PF04258_consen    5 EETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKKWKL   84 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEE
Confidence            3479999999999999999999999999765       4889999999999988888887765433111   000000  


Q ss_pred             --c----cccCCccchHHHHHHHHHHHHHHHHHh-hc-hhhhhhHHHHHHHHHHHHhcccCcHhHHHHHHHHHHHHhhhh
Q 018319          118 --S----RCCSKSLTRIQWLLLLACTSVVVAWLV-SG-HWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFW  189 (358)
Q Consensus       118 --~----~~~~~~~~~~~~l~~~~~~~~~~~w~~-~~-~Wil~Nilgi~~~i~~i~~l~l~s~k~~~iLL~~lf~YDIFw  189 (358)
                        .    +.+..+++..++++..+|+++++.|++ ++ ||++||++|+|+|+++++.+|+||+|+++++|+++|+|||||
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YDif~  164 (298)
T PF04258_consen   85 SFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNEHWILQNILGICFCINIISLIRLPSFKTATILLIGLFLYDIFW  164 (298)
T ss_dssp             ------------------------------S-------------------------------------------------
T ss_pred             EEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHH
Confidence              0    134567888899999999999999876 45 899999999999999999999999999999999999999999


Q ss_pred             hhccccccCcceeeeeeccCCCCCcccccccCCCCcccccccCcCCCEEEEecccCCCCCCCCCCCCccccccccchhhH
Q 018319          190 VFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMP  269 (358)
Q Consensus       190 VF~tp~~fg~sVMvtVAtg~~~~~~~~~~~~~~~p~~~~~~~~~~~PikL~~P~~~~~~~~~~~~~~~~SmLGLGDIViP  269 (358)
                      ||+||++||+|||++||||+.++|                   .++|+|+++||.....   .++.+++|||||||||+|
T Consensus       165 VF~s~~~~g~svM~~VA~~~~~~~-------------------~~~P~~l~~P~~~~~~---~~~~~~~s~LGlGDIviP  222 (298)
T PF04258_consen  165 VFISPYFFGTSVMVTVATGGFDAP-------------------EKLPIKLQFPRFFDSN---SSCPKPFSMLGLGDIVIP  222 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhccccCCCchhhhhhccccccc-------------------cCCCeEEEEecccccc---ccCCCCeeEeccchHHHH
Confidence            999999999999999999754432                   3579999999985421   245789999999999999


Q ss_pred             HHHHHHHHHhhhccccCcccccccCCCCCcchhhhhhHHHHHHHHHHHHhc-------------CCcccHHHHHHHHHHh
Q 018319          270 AMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVRK  336 (358)
Q Consensus       270 Gl~ia~~lrfD~~~~~~~~~~~~~~~~~~~~YF~~s~igY~~GL~~T~~a~-------------VP~~L~~~~~~A~~Rg  336 (358)
                      |+|+++|+|||.++.           .++++||.++++||++||++|++++             ||+|+++++++|++||
T Consensus       223 Gl~i~~~~rfD~~~~-----------~~~~~Yf~~~~~~Y~~Gl~~t~~~~~~~~~~QPALlylvP~~l~~~~~~a~~r~  291 (298)
T PF04258_consen  223 GLFIAFCLRFDKSRN-----------KSRKPYFIASLIGYALGLLLTFVALHLFKHGQPALLYLVPCTLGSVLLVAWIRG  291 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHhhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhCCCCCeehHHHHHHHHHHHHHHHHhh
Confidence            999999999999872           2356799999999999999999874             9999999999999999


Q ss_pred             hHHHhhc
Q 018319          337 DLDELWE  343 (358)
Q Consensus       337 El~~lW~  343 (358)
                      |++++||
T Consensus       292 el~~~w~  298 (298)
T PF04258_consen  292 ELKDFWN  298 (298)
T ss_dssp             -------
T ss_pred             HHHHhhC
Confidence            9999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=100.00  E-value=4.1e-45  Score=346.17  Aligned_cols=232  Identities=30%  Similarity=0.473  Sum_probs=197.5

Q ss_pred             cccCccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCccchHHH
Q 018319           51 IMLDRSQALMIPVMSSCSLVLMFYLFSSVSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQW  130 (358)
Q Consensus        51 ~~l~~~~A~~FPv~aS~~Ll~Lyy~f~~v~~ll~~~~~i~g~~al~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (358)
                      +.+|+.+++.||+++|++|+++|+++++.+..+..|+++.|+.+++.++.+.....                  .+....
T Consensus         3 ~~~n~~~~i~fii~~s~~Ll~Ly~~~~~~~i~~~~~f~~~~~~~~~~~~~~~~~~~------------------~~~~~~   64 (249)
T smart00730        3 SLLNSLVAIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEVFR------------------VDYPTL   64 (249)
T ss_pred             ccccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHH
Confidence            36899999999999999999999999888888999999999999999988765432                  123445


Q ss_pred             HHHHHHHHHHHHHHhh-c-hhhhhhHHHHHHHHHHHHhcccCcHhHHHHHHHHHHHHhhhhhhccccccCcceeeeeecc
Q 018319          131 LLLLACTSVVVAWLVS-G-HWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQ  208 (358)
Q Consensus       131 l~~~~~~~~~~~w~~~-~-~Wil~Nilgi~~~i~~i~~l~l~s~k~~~iLL~~lf~YDIFwVF~tp~~fg~sVMvtVAtg  208 (358)
                      +....+.+++..|.+. | ||+.||++|+++|+++++.+|+||+|++++||+++++||+||||.||.  |++|||+||+|
T Consensus        65 ~~~~~~~~v~~~~~~~~~~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~--~~~vMv~vA~~  142 (249)
T smart00730       65 LILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEVATG  142 (249)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCC--CchHHhhHhcc
Confidence            6667777777777665 3 999999999999999999999999999999999999999999999984  99999999986


Q ss_pred             CCCCCcccccccCCCCcccccccCcCCCEEEEecccCCCCCCCCCCCCccccccccchhhHHHHHHHHHHhhhccccCcc
Q 018319          209 QASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTPGGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSNTV  288 (358)
Q Consensus       209 ~~~~~~~~~~~~~~~p~~~~~~~~~~~PikL~~P~~~~~~~~~~~~~~~~SmLGLGDIViPGl~ia~~lrfD~~~~~~~~  288 (358)
                      ..++                   .+..|+++..||...+  ..+.+.+++|||||||||+||+++++|+|||.+++    
T Consensus       143 ~~~~-------------------~~~~P~ll~~p~~~~~--~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~----  197 (249)
T smart00730      143 RDEP-------------------IKVFPALLYVPRLVVS--FEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVR----  197 (249)
T ss_pred             CCCC-------------------cccCChhhcccccccc--cccCCCCccceecCCCeeeHHHHHHHHHHhhhccc----
Confidence            4331                   1457999999986432  12345678999999999999999999999998642    


Q ss_pred             cccccCCCCCcchhhhhhHHHHHHHHHHHHhc-------------CCcccHHHHHHHHHH
Q 018319          289 SLFDLHSSKGHKYIWYALPGYAIGLVTALSAG-------------VPSTLGPVIVMSWVR  335 (358)
Q Consensus       289 ~~~~~~~~~~~~YF~~s~igY~~GL~~T~~a~-------------VP~~L~~~~~~A~~R  335 (358)
                              +++.||.+|++||.+||+.|++++             ||+++++.+++|+.|
T Consensus       198 --------~~~~yf~~~~~ay~~GL~~t~~~l~~~~~aqPALlylvp~~l~~~~~~~~~r  249 (249)
T smart00730      198 --------SDSNYFLACFVAYGIGLILTLVLLALFKKAQPALPYLVPFTLVFYLLTALLR  249 (249)
T ss_pred             --------CCcccHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhC
Confidence                    356799999999999999999863             999999999999987

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=98.97  E-value=2e-08  Score=96.33  Aligned_cols=126  Identities=22%  Similarity=0.343  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHhhchhhhhhHHHHHHHHH--HHHhcccCcHhHHHHHHHHHHHHhhhhhhccccccCcceeeeee
Q 018319          129 QWLLLLACTSVVVAWLVSGHWILNNLLGIAICIA--FVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVA  206 (358)
Q Consensus       129 ~~l~~~~~~~~~~~w~~~~~Wil~Nilgi~~~i~--~i~~l~l~s~k~~~iLL~~lf~YDIFwVF~tp~~fg~sVMvtVA  206 (358)
                      ...+...+.++++..+....|+..|+.|+.++..  ++--+++.= -.+.+||..+-+||..=||.|      .-|+|.|
T Consensus        92 ~~~a~~~ai~~~~~L~~ypEWYviD~~Gil~~aG~aaiFGISl~~-lpaiiLL~iLAVYDaISVYkT------kHMltLA  164 (283)
T PF06550_consen   92 NIIALILAIALTALLYKYPEWYVIDIAGILMGAGAAAIFGISLGI-LPAIILLAILAVYDAISVYKT------KHMLTLA  164 (283)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHhhhccH-HHHHHHHHHHHHhhhhheecc------hHHHHHH
Confidence            3455666666677667778999999999999866  455556654 458899999999999999855      6999999


Q ss_pred             ccCCCCCcccccccCCCCcccccccCcCCCEEEEecccCCCCCCC-------CCCCCccccccccchhhHHHHHHHHHHh
Q 018319          207 TQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVTP-------GGNATDFMMLGLGDMAMPAMLLALVLCF  279 (358)
Q Consensus       207 tg~~~~~~~~~~~~~~~p~~~~~~~~~~~PikL~~P~~~~~~~~~-------~~~~~~~SmLGLGDIViPGl~ia~~lrf  279 (358)
                      .|-                     -..++|+.+++|+.......+       ..++|+--++|+||.++|.++++-...|
T Consensus       165 egv---------------------~d~klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f  223 (283)
T PF06550_consen  165 EGV---------------------MDLKLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFF  223 (283)
T ss_pred             HHH---------------------hccCCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHh
Confidence            752                     246899999999875432211       0112344589999999999999988888


Q ss_pred             hhc
Q 018319          280 DHR  282 (358)
Q Consensus       280 D~~  282 (358)
                      ...
T Consensus       224 ~~~  226 (283)
T PF06550_consen  224 LSA  226 (283)
T ss_pred             ccc
Confidence            643

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=98.14  E-value=2.4e-06  Score=79.87  Aligned_cols=115  Identities=26%  Similarity=0.471  Sum_probs=82.2

Q ss_pred             HHHHHHH--hhchhhhhhHHHHHHHHHH--HHhcccCcHhHHHHHHHHHHHHhhhhhhccccccCcceeeeeeccCCCCC
Q 018319          138 SVVVAWL--VSGHWILNNLLGIAICIAF--VSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNP  213 (358)
Q Consensus       138 ~~~~~w~--~~~~Wil~Nilgi~~~i~~--i~~l~l~s~k~~~iLL~~lf~YDIFwVF~tp~~fg~sVMvtVAtg~~~~~  213 (358)
                      +++..+.  ....|+.-|..|.+++...  +--+++.-+. +..+|..+=+||..=|+.|      .-|++.|.|-    
T Consensus        99 aI~~~~lL~~~peWyVid~ag~~la~Giaai~GIsfgv~p-avvlL~~lavYDaIsVYkT------~HMIslA~~v----  167 (277)
T COG3389          99 AIGLVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISFGVLP-AVVLLIALAVYDAISVYKT------RHMISLAEGV----  167 (277)
T ss_pred             HHHHHHhhhhccceEEeehHHHHHHhhHHHhheeecchHH-HHHHHHHHHHHHHHHHHhH------HHHHHHHHHH----
Confidence            4444443  3467999999999887655  4445554443 6788999999999999855      6999999752    


Q ss_pred             cccccccCCCCcccccccCcCCCEEEEecccCCCCCC----CCCCCCccccccccchhhHHHHHHHHHHhh
Q 018319          214 VHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVT----PGGNATDFMMLGLGDMAMPAMLLALVLCFD  280 (358)
Q Consensus       214 ~~~~~~~~~~p~~~~~~~~~~~PikL~~P~~~~~~~~----~~~~~~~~SmLGLGDIViPGl~ia~~lrfD  280 (358)
                                       ...|+||.+++|.+..-...    +.-.+++-=|.|+||+++|-+++.-..-|-
T Consensus       168 -----------------~d~~lPmlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~  221 (277)
T COG3389         168 -----------------MDLDLPMLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFL  221 (277)
T ss_pred             -----------------HhcCCceEEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhc
Confidence                             24799999999976432211    112234555999999999999987666653

>KOG2736 consensus Presenilin [Signal transduction mechanisms]

Probab=84.11  E-value=28  Score=35.58  Aligned_cols=46  Identities=22%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             ccccccccchhhHHHHHHHHHHhhhccccCcccccccCCCCCcchhhhhhHHHHHHHHHHHHh
Q 018319          257 DFMMLGLGDMAMPAMLLALVLCFDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSA  319 (358)
Q Consensus       257 ~~SmLGLGDIViPGl~ia~~lrfD~~~~~~~~~~~~~~~~~~~~YF~~s~igY~~GL~~T~~a  319 (358)
                      +---|||||-|+=-++++-+.-+|-.                 .=-++|.+|-.+||.+|...
T Consensus       318 r~ikLGlGDFIFYSvLvGkAa~~~d~-----------------~TviAC~vaIL~GL~~TL~l  363 (406)
T KOG2736|consen  318 RGIKLGLGDFIFYSVLVGKAAAYGDL-----------------NTVIACFVAILIGLCLTLLL  363 (406)
T ss_pred             cceeeccCceEEEEeeccchhhcCCh-----------------HHHHHHHHHHHHHHHHHHHH
Confidence            34479999999877777655444411                 12368899999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.86
2kr6_A	176	Presenilin-1; protease, alternative splicing, alzh	87.59

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.86  E-value=7.6e-22  Score=186.81  Aligned_cols=232  Identities=18%  Similarity=0.257  Sum_probs=138.3

Q ss_pred             cceehhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCccchHHHHHHH
Q 018319           56 SQALMIPVMSSCSLVLMFYLFSS-VSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLL  134 (358)
Q Consensus        56 ~~A~~FPv~aS~~Ll~Lyy~f~~-v~~ll~~~~~i~g~~al~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  134 (358)
                      ++.+.+.++.-.+-..+.+.+|+ .+.++..+..+......+..+.+++..+..               .-.....++..
T Consensus        45 sNs~~YI~~ILvfT~~mL~l~k~~~~~ii~~ii~~~i~~~~~YVf~~l~~~~~~---------------~~~~~~~~a~~  109 (301)
T 4hyg_A           45 ANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALG---------------PTTAAAAGTLI  109 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------SCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------cchhhHHHHHH
Confidence            34455544433333334444552 333444444444444444555555443211               11123345566


Q ss_pred             HHHHHHHHHHhhchhhhhhHHHHHHHHHHHHhc--ccCcHhHHHHHHHHHHHHhhhhhhccccccCcceeeeeeccCCCC
Q 018319          135 ACTSVVVAWLVSGHWILNNLLGIAICIAFVSHV--RLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASN  212 (358)
Q Consensus       135 ~~~~~~~~w~~~~~Wil~Nilgi~~~i~~i~~l--~l~s~k~~~iLL~~lf~YDIFwVF~tp~~fg~sVMvtVAtg~~~~  212 (358)
                      .+.++++.++...+|+..|+.|+++|..+....  ++..+ .+.+||++|.+||++|||.|      +.|+|+|+|-   
T Consensus       110 ~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~T------kHMvtLAegv---  179 (301)
T 4hyg_A          110 GAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRT------KHMITLAEGV---  179 (301)
T ss_dssp             HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHH------HHHHHHTTTC---
T ss_pred             HHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCc------hHHHHHHHhh---
Confidence            677888888889999999999999999876555  55888 89999999999999999866      6999999752   


Q ss_pred             CcccccccCCCCcccccccCcCCCEEEEecccCCCCCC----C--CCCCCccccccccchhhHHHHHHHHHHhhhccccC
Q 018319          213 PVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVT----P--GGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSN  286 (358)
Q Consensus       213 ~~~~~~~~~~~p~~~~~~~~~~~PikL~~P~~~~~~~~----~--~~~~~~~SmLGLGDIViPGl~ia~~lrfD~~~~~~  286 (358)
                                        -..|+|+++++|+.......    +  ...+++..++|+||+|+|+++++-+.+||..... 
T Consensus       180 ------------------mdlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~-  240 (301)
T 4hyg_A          180 ------------------LETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAV-  240 (301)
T ss_dssp             --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             ------------------hccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccc-
Confidence                              24799999999986432211    0  1224678899999999999999999999964321 


Q ss_pred             cccccccCCCCCcchhhhhhHHHHHHHHHHHH-hc-----------CCcccHHHHHHHHHHhhHH
Q 018319          287 TVSLFDLHSSKGHKYIWYALPGYAIGLVTALS-AG-----------VPSTLGPVIVMSWVRKDLD  339 (358)
Q Consensus       287 ~~~~~~~~~~~~~~YF~~s~igY~~GL~~T~~-a~-----------VP~~L~~~~~~A~~RgEl~  339 (358)
                          ..+   -+-+ +..+++||.+|+.+++. ++           .+++++..++-++.+||++
T Consensus       241 ----~g~---~~lP-algA~~Gt~~Gl~vLl~~V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          241 ----LWT---LSAP-TLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             ----------CCCS-CHHHHHHHHHHHHHHHHHHTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             ----ccc---ccch-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence                000   1124 88999999999999965 32           6788888888899999886

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=87.59  E-value=0.93  Score=39.98  Aligned_cols=56  Identities=25%  Similarity=0.261  Sum_probs=41.6

Q ss_pred             cccccccchhhHHHHHHHHH--H-hhhccccCcccccccCCCCCcchhhhhhHHHHHHHHHHHHhc-----------CCc
Q 018319          258 FMMLGLGDMAMPAMLLALVL--C-FDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAG-----------VPS  323 (358)
Q Consensus       258 ~SmLGLGDIViPGl~ia~~l--r-fD~~~~~~~~~~~~~~~~~~~~YF~~s~igY~~GL~~T~~a~-----------VP~  323 (358)
                      ---|||||-|+=+++++-+.  + .|.                  .=..+|++|..+||.+|+...           +|.
T Consensus        87 gikLGLGDFIFYSvLVgkAa~~~~~d~------------------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPiSI  148 (176)
T 2kr6_A           87 GVKLGLGDFIFYSVLVGKASATASGDW------------------NTTIACFVAILIGLCLTLLLLAIFKKALPALPISI  148 (176)
T ss_dssp             CCSSCTTTHHHHHHHHHHHHHHSCCTT------------------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSSSCC
T ss_pred             cccccccCeeehHHHHHHHHHhhccCH------------------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcHHH
Confidence            35799999999999999875  3 232                  246789999999999999753           555


Q ss_pred             ccHHHHHH
Q 018319          324 TLGPVIVM  331 (358)
Q Consensus       324 ~L~~~~~~  331 (358)
                      .+|.+...
T Consensus       149 ~lG~~fyf  156 (176)
T 2kr6_A          149 TFGLVFYF  156 (176)
T ss_dssp             CCHHHHHH
T ss_pred             HHHHHHHH
Confidence            56655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00