Citrus Sinensis ID: 018320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHccccccccEEEccccccccccEEEccccccccccccccccEEccHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHcccccccHHHHHccccccHHHHccccccccccccccccccccccccccEEccccEEEEHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEccccccccccccccccEEEEEccccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEcccEEEccHHHcccccEEccEEcccccccccccEcccccEEEccccccccccEEEccccHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEcccccEEEEEcccccccEEEEEccccEEEEEEEccccHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNMALKLEefglsgsdaenvcyLRDLADANRLVNVMKScsggnavvigGGYIGMECAASLVINKInvtmvfpeahcmarlfTPKIASYYEEYYKskgvkfvkgtvlssfdvdsngkvVAVNlrdgnrlptdmvvvgigirpntslfegQLTLEKggikvtgrlqssnssvyavgdvaafplkllgetrrlEHVDSARKSAKHAVAAImepdktdkfdylpffysRVFTLSWQFYGDNVGEVVhygnfsgttfGAYWVNKGRlvgsfleggtKEEYEAIAKATRLQPVVEDLAELETQGLGFALAvsqkplpstpvdgktvpglvlgkslyplhaTAGVILAASIAAFAYWYGRRRRRW
Flexible Loop (DISEMBL)
MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVlssfdvdsngkvvavnlrdgnrlptDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGrlqssnssvyavGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAimepdktdkfdYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVsqkplpstpvdGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Low Complexity Region (SEG)
MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Disordered region (IsUnstruct)
***************DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH**********AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQK*****PVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGR*****
Disordered Region (DISOPRED)
MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGF*********************LVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRR*
Disordered Region (DISEMBL)
MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE***********AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Disordered Region (DISPRO)
MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q9LK94	488	Probable monodehydroascor	yes	no	0.991	0.727	0.733	1e-147
Q43497	433	Monodehydroascorbate redu	N/A	no	0.829	0.685	0.531	3e-89
Q93WJ8	435	Probable monodehydroascor	no	no	0.840	0.691	0.529	8e-89
Q40977	433	Monodehydroascorbate redu	N/A	no	0.832	0.688	0.508	1e-86
Q42711	434	Monodehydroascorbate redu	N/A	no	0.840	0.693	0.535	7e-86
Q9LFA3	434	Probable monodehydroascor	no	no	0.840	0.693	0.525	3e-84
Q9SR59	441	Probable monodehydroascor	no	no	0.832	0.675	0.513	4e-83
P92947	493	Monodehydroascorbate redu	no	no	0.821	0.596	0.428	3e-66
P83966	166	Monodehydroascorbate redu	N/A	no	0.396	0.855	0.459	3e-34
P16640	422	Putidaredoxin reductase O	yes	no	0.681	0.578	0.306	6e-27

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  522 bits (1345), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/364 (73%), Positives = 306/364 (84%), Gaps = 9/364 (2%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV AVNL+
Sbjct: 185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA FP+KL
Sbjct: 245 DGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKL 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
            GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G+VVH
Sbjct: 305 FGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVH 364

Query: 244 YGNF-SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQGLGF 301
           +G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +GLGF
Sbjct: 365 FGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGF 424

Query: 302 A-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRR 354
           A   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+WYGRR
Sbjct: 425 AHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRR 484

Query: 355 RRRW 358
           RRRW
Sbjct: 485 RRRW 488

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/305 (53%), Positives = 214/305 (70%), Gaps = 8/305 (2%)

Query: 5   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
           LKL +FG+ G+D++N+ YLR++ DA++LV  +K+   G AVV+GGGYIG+E +A L +N 
Sbjct: 127 LKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSAVLRLNN 186

Query: 65  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 124
           I V MV+PE  CM RLFT  IA++YE YYK+KGV  +KGTV   FD   NG+V  V L+D
Sbjct: 187 IEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKD 246

Query: 125 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
           G  L  D+VVVG+G RP T+LF+GQ+  EKGGIK     ++S   VYAVGDVA FPLK+ 
Sbjct: 247 GRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 306

Query: 185 GETRRLEHVDSARKSAKHAVAAIMEPDK---TDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
            E RR+EHVD +RKSA+ AV AI   ++    D++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct: 307 NEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYGDNVGET 366

Query: 242 VHYG----NFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 297
           V +G    N +   FG YW+  G++VG+FLE G+ EE +AIAK  ++QP    L +L  +
Sbjct: 367 VLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TLDQLAQE 425

Query: 298 GLGFA 302
           G+ FA
Sbjct: 426 GISFA 430

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  327 bits (838), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 163/308 (52%), Positives = 214/308 (69%), Gaps = 7/308 (2%)

Query: 5   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
           ++L +FG+ G+DA+N+ YLR+L DA+ L   M++   G AVV+GGGYIG+E  A+L  N 
Sbjct: 128 IRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANN 187

Query: 65  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 124
           ++VTMV+PE  CM RLFT  IAS+YE YY +KG+  VKGTV S F  +SNG+V  V L+D
Sbjct: 188 LDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKD 247

Query: 125 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
           G  L  D+V+VG+G RP  SLF+ Q+  EKGG+K  G  ++S   VYA+GDVA FP+KL 
Sbjct: 248 GRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLY 307

Query: 185 GETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
            E RR+EHVD ARKSA+ AV AI    E +   ++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct: 308 NEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGES 367

Query: 242 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 297
           V +G+    +    FG+YW+ + ++VG+FLEGG+ EE  AIAK  R QP VE L  L  +
Sbjct: 368 VLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKE 427

Query: 298 GLGFALAV 305
           GL FA  +
Sbjct: 428 GLSFATNI 435

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  320 bits (820), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/305 (50%), Positives = 213/305 (69%), Gaps = 7/305 (2%)

Query: 5   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
           ++L +FG+ G++A+N+ YLR++ DA++L   +K       VV+GGGYIG+E +A L +N 
Sbjct: 126 IRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKLND 185

Query: 65  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 124
           ++VTMV+PE  CM RLFT +IA++YE YY +KG+  +KGTV   F  +S+G+V  V L+D
Sbjct: 186 LDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKLKD 245

Query: 125 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
           G  L  D+V+VG+G RP  SLF+GQ+  + GGIK     ++S   VYAVGDVA FPLKL 
Sbjct: 246 GRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLKLY 305

Query: 185 GETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
            + RR+EHVD ARKSA+ A  AI   D     +++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct: 306 NDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYGDNVGET 365

Query: 242 VHYGN----FSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 297
           V +G+     S   FG YW+ +G++VG+FLEGGT +E +AIAK  R +P VED+ +L  +
Sbjct: 366 VLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVEDVNQLAEE 425

Query: 298 GLGFA 302
           GL FA
Sbjct: 426 GLSFA 430

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  317 bits (813), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 218/308 (70%), Gaps = 7/308 (2%)

Query: 5   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
           +KL +FG+ G+DA+N+ YLR++ DA++LV  +K+   G  VV+GGGYIG+E  A+L IN 
Sbjct: 127 IKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGAALRINN 186

Query: 65  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 124
            +V+MV+PE  CM RLFTP+IA++YE YY  KG+  +KGTV   F VD+NG+V  V L+D
Sbjct: 187 FDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKEVKLKD 246

Query: 125 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
           G  L  D+VVVG+G RP TSLF+GQ+  EKGGIK     ++S   VYAVGDVA FPLKL 
Sbjct: 247 GRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLY 306

Query: 185 GETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
            E RR+EHVD +RKSA+ AV AI    E    +++DYLP+FYSR F LSWQFYGDNVG+ 
Sbjct: 307 NELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFDLSWQFYGDNVGDA 366

Query: 242 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 297
           V +G+ S  +    FG+YW+  G++VG+FLE G+ EE +AIAK  R+QP VE    L  +
Sbjct: 367 VLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESSDLLLKE 426

Query: 298 GLGFALAV 305
           G+ FA  V
Sbjct: 427 GISFASKV 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  312 bits (799), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/308 (52%), Positives = 221/308 (71%), Gaps = 7/308 (2%)

Query: 5   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
           L+L +FG+ G+D++N+ YLR++ DA++LV  +K+  GG AVV+GGGYIG+E +A L IN 
Sbjct: 127 LRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINN 186

Query: 65  INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 124
           ++VTMVFPE  CM RLFT  IA++YE YY +KGVK +KGTV S F    NG+V  V L+D
Sbjct: 187 LDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKD 246

Query: 125 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
           G  L  D+V+VG+G +P TSLF+GQ+  +KGGIK     ++S   VYAVGDVA FPLK+ 
Sbjct: 247 GRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 306

Query: 185 GETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
           G+ RR+EHVD +RKSA+ AV AI   +     +++DYLPFFYSR F LSWQFYGDNVG+ 
Sbjct: 307 GDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDS 366

Query: 242 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 297
           V +G+ + +     FGAYWV  G++VG+F+EGG+ +E +A+AK  + +P  E L EL  Q
Sbjct: 367 VLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQ 426

Query: 298 GLGFALAV 305
           G+ FA  +
Sbjct: 427 GISFAAKI 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  308 bits (789), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 157/306 (51%), Positives = 209/306 (68%), Gaps = 8/306 (2%)

Query: 5   LKLEEFGLSGSDAENVCYLRDLADANRLVNVMK-SCSGGNAVVIGGGYIGMECAASLVIN 63
           ++L E G+  +D +N+ YLR++ D++ L   M+     G AV+IGGG++G+E +++L  N
Sbjct: 128 IRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRAN 187

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
              VTMVFPE   + R FT +IAS+YE YY +KG+K +KGTV + F  +S+G+V  V L 
Sbjct: 188 NHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLE 247

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG  L  ++VV G+G RP TSLF+GQL  EKGGIK  G  ++S   VYA+GDVA FP+K+
Sbjct: 248 DGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKM 307

Query: 184 LGETRRLEHVDSARKSAKHAVAAIM--EPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE 240
            G TRR+EH D+ARKSA  AV AI   E  KT   +DYLP+FYSR F LSW+FYG+NVGE
Sbjct: 308 YGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGE 367

Query: 241 VVHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 296
            V +G+    +    FG YWV  G++VG FLEGGT+EE++AIAK  R QP VE L  L  
Sbjct: 368 SVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSE 427

Query: 297 QGLGFA 302
           +GL FA
Sbjct: 428 EGLSFA 433

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  252 bits (643), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 132/308 (42%), Positives = 186/308 (60%), Gaps = 14/308 (4%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           G     V Y+R++ADA+ L+  +        V++GGGYIGME AA+ V   ++ T+VFPE
Sbjct: 191 GGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEVAAAAVAWNLDTTIVFPE 248

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              + RLFTP +A  YEE Y+  GVKFVKG  +++ +  S+G+V AV L DG+ +  D V
Sbjct: 249 DQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTV 308

Query: 134 VVGIGIRPNTSLFEGQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 191
           V+GIG +P    FE  L + K  GGI+V G  ++S   ++A+GDVAAFPLK+     R+E
Sbjct: 309 VIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVE 367

Query: 192 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLS-------WQFYGDNVGEVVHY 244
           HVD AR+SA+H V +++    TD +DYLP+FYSRVF          WQF+GDNVGE V  
Sbjct: 368 HVDHARRSAQHCVKSLLTA-HTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEV 426

Query: 245 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALA 304
           GNF       +W+  GRL G  +E G+ EE++ + K  R QP+V+         +  AL 
Sbjct: 427 GNFD-PKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query: 305 VSQKPLPS 312
           ++Q  L S
Sbjct: 486 IAQAALQS 493

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P83966|MDARF_CUCSA Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 107/183 (58%), Gaps = 41/183 (22%)

Query: 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVY 171
           D++  V A+ L+DG  L  D+VVVG+G RP  SLF                 ++S   VY
Sbjct: 23  DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLF-----------------KTSIPDVY 65

Query: 172 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSW 231
           AVGDVA +PLKL  E RR+EHVD AR S              +++DYLP+FYSR F L+W
Sbjct: 66  AVGDVATYPLKLYNELRRVEHVDHARLS-------------IEEYDYLPYFYSRTFNLAW 112

Query: 232 QFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL 291
           QFYGDNVGE V + +     FG YW+   ++VG FLEGGT +EY    K  R+QP VE L
Sbjct: 113 QFYGDNVGETVLFPD----NFGTYWI---KVVGVFLEGGTPDEY----KVARVQPPVESL 161

Query: 292 AEL 294
            +L
Sbjct: 162 DQL 164

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 7/251 (2%)

Query: 17  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
           A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  
Sbjct: 127 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 184

Query: 77  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 135
           + R+  P ++++YE  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ 
Sbjct: 185 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 244

Query: 136 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           GIG+ PN  L          GI +   +Q+S+  + AVGD A F  +L     R+E V +
Sbjct: 245 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 304

Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 253
           A + A+  +AAI+   K  + +  P+F+S  + +  +  G + G   ++  G+ +   F 
Sbjct: 305 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 362

Query: 254 AYWVNKGRLVG 264
            +++   R++ 
Sbjct: 363 VFYLQGDRVLA 373

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
225452428	478	PREDICTED: probable monodehydroascorbate	0.988	0.740	0.845	1e-176
224055551	478	predicted protein [Populus trichocarpa]	0.988	0.740	0.805	1e-170
356571330	478	PREDICTED: probable monodehydroascorbate	0.988	0.740	0.797	1e-166
449483761	480	PREDICTED: probable monodehydroascorbate	0.988	0.737	0.812	1e-165
449450093	480	PREDICTED: probable monodehydroascorbate	0.988	0.737	0.809	1e-165
255560882	478	monodehydroascorbate reductase, putative	0.952	0.713	0.800	1e-162
356558865	478	PREDICTED: probable monodehydroascorbate	0.988	0.740	0.805	1e-156
218117601	320	peroxisomal monodehydroascorbate reducta	0.893	1.0	0.794	1e-148
15232273	488	monodehydroascorbate reductase (NADH) [A	0.991	0.727	0.733	1e-146
242062770	476	hypothetical protein SORBIDRAFT_04g03044	0.972	0.731	0.684	1e-144

>gi|225452428|ref|XP_002277200.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Vitis vinifera] gi|147795418|emb|CAN77104.1| hypothetical protein VITISV_018446 [Vitis vinifera] gi|296087650|emb|CBI34906.3| unnamed protein product [Vitis vinifera]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/355 (84%), Positives = 327/355 (92%), Gaps = 1/355 (0%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           AL+LEEFG++GSDAENVCYLRDLADA RLV+VMKSC+GGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALQLEEFGVAGSDAENVCYLRDLADATRLVDVMKSCTGGNAVVIGGGYIGMECAASLVIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KINVTMVFPEAHCMARLFTPKIASYYE+YYKSKGVKF+KGT LSSFD+D +GKV AV LR
Sbjct: 185 KINVTMVFPEAHCMARLFTPKIASYYEDYYKSKGVKFIKGTALSSFDIDDSGKVTAVTLR 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DGNRLP DMVVVGIGIRPNT LFEGQLTLEKGGIKV G +QSSNSSVYAVGDVAAFP+KL
Sbjct: 245 DGNRLPADMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGWMQSSNSSVYAVGDVAAFPVKL 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
            GETRRLEHVDSARKSA+HAV AIMEP KT +FDYLPFFYSRVFTLSWQFYGD+VGEVVH
Sbjct: 305 FGETRRLEHVDSARKSARHAVTAIMEPAKTSEFDYLPFFYSRVFTLSWQFYGDSVGEVVH 364

Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303
           YG+FSG+TFGAYWV+KG+LVGSFLEGGTKEEYEAIAKAT+L+P VEDLAELE QGLGFAL
Sbjct: 365 YGDFSGSTFGAYWVSKGQLVGSFLEGGTKEEYEAIAKATKLKPDVEDLAELERQGLGFAL 424

Query: 304 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 358
           AVS+KP PS P +  +  GL L K +Y  HATAGVI+AAS+A FAYWYGR+RRRW
Sbjct: 425 AVSRKPPPSQPPEVSS-SGLNLQKPMYAWHATAGVIVAASVAVFAYWYGRKRRRW 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055551|ref|XP_002298535.1| predicted protein [Populus trichocarpa] gi|222845793|gb|EEE83340.1| predicted protein [Populus trichocarpa]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 320/355 (90%), Gaps = 1/355 (0%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG+SGSDAENVCYLRDLADANR+V+VM+SC+ GNAVVIGGGYIGMECAASLV N
Sbjct: 125 ALKLEEFGVSGSDAENVCYLRDLADANRVVDVMQSCASGNAVVIGGGYIGMECAASLVTN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           +INVTMVFPE HCMARLFTPKIASYYE YY SKGV+FVKGTVLSSF++D  GKV AVNLR
Sbjct: 185 RINVTMVFPEVHCMARLFTPKIASYYEGYYNSKGVRFVKGTVLSSFEIDPIGKVTAVNLR 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG++LP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV GR+Q+SN+SVYAVGDVAAFP+KL
Sbjct: 245 DGSQLPADMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGRMQTSNTSVYAVGDVAAFPVKL 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
            GETRRLEHVDSARK+AKHAVAAIMEP+KTD+FDYLPFFYSR FT SWQFYGDN GEVVH
Sbjct: 305 FGETRRLEHVDSARKTAKHAVAAIMEPEKTDEFDYLPFFYSRFFTFSWQFYGDNAGEVVH 364

Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303
           +G++SG T GAYW++KG LVGSFLEGGTKEEYEA+AK TRL+P ++D+ ELE QGLGFA+
Sbjct: 365 FGDYSGNTIGAYWISKGHLVGSFLEGGTKEEYEALAKTTRLKPAIDDITELERQGLGFAV 424

Query: 304 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 358
            VS+KPL S P D  +   LVL + L+  HATAGVI AASIAAFAYWYG+RRRRW
Sbjct: 425 TVSKKPLTSPPAD-VSDSTLVLERPLFAWHATAGVITAASIAAFAYWYGKRRRRW 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571330|ref|XP_003553831.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Glycine max]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 283/355 (79%), Positives = 318/355 (89%), Gaps = 1/355 (0%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG++GSDA NVCYLRD+ADANRLV+VM+SC GGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVTGSDAGNVCYLRDIADANRLVDVMQSCPGGNAVVIGGGYIGMECAASLVIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KINVTMVFPE HCM RLFT KIA+YYEEYYKS+GV F+KGTVLSSFD DSNGKV AVNLR
Sbjct: 185 KINVTMVFPEEHCMGRLFTSKIANYYEEYYKSRGVNFIKGTVLSSFDFDSNGKVTAVNLR 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG+ L  DMVVVGIGIRPNT LFEGQLTLEKGGIKV G LQSSNSSVYA+GDVAAFP+K 
Sbjct: 245 DGSTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGMLQSSNSSVYAIGDVAAFPVKA 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
           +GETRRLEHVDSARKSA+H V+AIMEP+KT +FDYLPFFYSR+FTLSWQFYGDNVGEVV+
Sbjct: 305 VGETRRLEHVDSARKSARHVVSAIMEPNKTREFDYLPFFYSRIFTLSWQFYGDNVGEVVY 364

Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303
           YG+ SG+TFGAYWV+K  LVG+FLEGGTKEEYEAIAKATRL+PV+EDL ELE QGL FA+
Sbjct: 365 YGDMSGSTFGAYWVSKDHLVGAFLEGGTKEEYEAIAKATRLRPVIEDLTELERQGLRFAV 424

Query: 304 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 358
            VS+KP+ S P++ +    L+L K LY  HATAGVI+AASIA FAY+YG++R RW
Sbjct: 425 TVSEKPMASPPIEVRA-SDLLLEKPLYAWHATAGVIIAASIAGFAYFYGKKRHRW 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483761|ref|XP_004156683.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Cucumis sativus]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/357 (81%), Positives = 321/357 (89%), Gaps = 3/357 (0%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG++GSDAENVCYLRDL DANR V+VM SCSGGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVNGSDAENVCYLRDLNDANRAVDVMHSCSGGNAVVIGGGYIGMECAASLVIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KINVTMVFPEA CM RLFTPKIAS+YE+YYKSKGV+FVKGTVLSSFD+DSNGKVVAVNLR
Sbjct: 185 KINVTMVFPEAQCMPRLFTPKIASFYEDYYKSKGVEFVKGTVLSSFDMDSNGKVVAVNLR 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG RLP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV G++QSSNSSVYAVGDVAAFP+K+
Sbjct: 245 DGKRLPVDMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGKMQSSNSSVYAVGDVAAFPVKI 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
             ETRRLEHVDSARK A+HAVAAIMEP+KT  FDY+PFFYSR+F LSWQFYGDN+GEVV+
Sbjct: 305 FSETRRLEHVDSARKCARHAVAAIMEPEKTGDFDYVPFFYSRIFALSWQFYGDNIGEVVY 364

Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303
           +G+FSG TFGAYWVNKG LVGSFLEGGTKEEY AIA  T L+P +EDLAELE++GL +A+
Sbjct: 365 FGDFSGNTFGAYWVNKGHLVGSFLEGGTKEEYAAIAMVTSLKPAIEDLAELESRGLSYAM 424

Query: 304 AVSQKPLPS--TPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 358
           A+S++P P   T VD  + P LV+ K +Y  HATAGVILA SIAAFAYWYGRRRRRW
Sbjct: 425 AISREPPPPQVTNVD-VSGPSLVIEKPMYRWHATAGVILAGSIAAFAYWYGRRRRRW 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450093|ref|XP_004142798.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Cucumis sativus]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 289/357 (80%), Positives = 320/357 (89%), Gaps = 3/357 (0%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG++GSDAENVCYLRDL DANR V+VM SCSGGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVNGSDAENVCYLRDLNDANRAVDVMHSCSGGNAVVIGGGYIGMECAASLVIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KINV MVFPEA CM RLFTPKIAS+YE+YYKSKGV+FVKGTVLSSFD+DSNGKVVAVNLR
Sbjct: 185 KINVAMVFPEAQCMPRLFTPKIASFYEDYYKSKGVEFVKGTVLSSFDMDSNGKVVAVNLR 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG RLP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV G++QSSNSSVYAVGDVAAFP+K+
Sbjct: 245 DGKRLPVDMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGKMQSSNSSVYAVGDVAAFPVKI 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
             ETRRLEHVDSARK A+HAVAAIMEP+KT  FDY+PFFYSR+F LSWQFYGDN+GEVV+
Sbjct: 305 FSETRRLEHVDSARKCARHAVAAIMEPEKTGDFDYVPFFYSRIFALSWQFYGDNIGEVVY 364

Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303
           +G+FSG TFGAYWVNKG LVGSFLEGGTKEEY AIA  T L+P +EDLAELE++GL +A+
Sbjct: 365 FGDFSGNTFGAYWVNKGHLVGSFLEGGTKEEYAAIAMVTSLKPAIEDLAELESRGLSYAM 424

Query: 304 AVSQKPLPS--TPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 358
           A+S++P P   T VD  + P LV+ K +Y  HATAGVILA SIAAFAYWYGRRRRRW
Sbjct: 425 AISREPPPPQVTNVD-VSGPSLVIEKPMYRWHATAGVILAGSIAAFAYWYGRRRRRW 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560882|ref|XP_002521454.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223539353|gb|EEF40944.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/346 (80%), Positives = 315/346 (91%), Gaps = 5/346 (1%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG++GS+AENVCYLRD+ADA+RLVNVM+SC+GGNAV+IGGGYIGMECAASL IN
Sbjct: 125 ALKLEEFGVNGSNAENVCYLRDVADADRLVNVMQSCTGGNAVIIGGGYIGMECAASLAIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           K+NVTMVFPEAHCMARLFTPKIASYYE+YYK KGV+F+KGTVLSS D+DSNGKV AVNLR
Sbjct: 185 KMNVTMVFPEAHCMARLFTPKIASYYEDYYKCKGVQFIKGTVLSSLDMDSNGKVTAVNLR 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DGNRLP D+VVVGIGIRPNTSLFEGQLTLEKGGIKV GR+Q+S +SVYAVGDVA+FP+KL
Sbjct: 245 DGNRLPADIVVVGIGIRPNTSLFEGQLTLEKGGIKVNGRMQTSITSVYAVGDVASFPVKL 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
            GETRRLEHVDSARKSA++AVAAIMEP+KT  FDYLPFFYSRVF LSWQFYGDN GEVVH
Sbjct: 305 FGETRRLEHVDSARKSARYAVAAIMEPNKTVDFDYLPFFYSRVFALSWQFYGDNAGEVVH 364

Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303
           +G++SG+T GAYWV+KG LVGSFLEGGTKEEYEAIAKATRL+P +ED ++LE QGLGFAL
Sbjct: 365 FGDYSGSTIGAYWVSKGHLVGSFLEGGTKEEYEAIAKATRLKPAIEDTSDLERQGLGFAL 424

Query: 304 AVSQKPLPSTPVD--GKTVPGLVLGKSLYPLHATAGVILAASIAAF 347
           AVS+ P+ S P D  G +   L+L + LY  HATAGV+LAAS+AAF
Sbjct: 425 AVSENPVTSPPGDVGGSS---LILERPLYAWHATAGVVLAASVAAF 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558865|ref|XP_003547723.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Glycine max]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 316/355 (89%), Gaps = 1/355 (0%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG+SGSDAENVCYLR +ADANRLV+VM+SC GGNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVSGSDAENVCYLRHIADANRLVDVMQSCPGGNAVVIGGGYIGMECAASLVIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KINVTMVFPE HCMARLFT KIA+YYEEYYKS+GV F+KGTVLSSFD DSNGKV AVNLR
Sbjct: 185 KINVTMVFPEEHCMARLFTSKIANYYEEYYKSRGVNFIKGTVLSSFDFDSNGKVTAVNLR 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG  L  DMVVVGIGIRPNT LFEGQLTLEKGGIKV G LQSSNSSVYA+GDVAAFP+K 
Sbjct: 245 DGTTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGMLQSSNSSVYAIGDVAAFPVKA 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
            GETRRLEHVDSARKSA H V++IMEP+KT +FDY+PFFYSRVFTLSWQFYGDNVGEVV+
Sbjct: 305 FGETRRLEHVDSARKSAIHVVSSIMEPNKTGEFDYIPFFYSRVFTLSWQFYGDNVGEVVY 364

Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303
           YG+ SG+ FGAYWV+KG LVG+FLEGGTKEEYEAIAKATRL+P +EDL ELE QGL FA+
Sbjct: 365 YGDMSGSAFGAYWVSKGHLVGAFLEGGTKEEYEAIAKATRLRPAIEDLTELERQGLSFAV 424

Query: 304 AVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 358
            VSQKP+   PV+ +    L+L K LY  HATAGVI+AASIAAFAY+YG++RRRW
Sbjct: 425 TVSQKPVVPPPVEVRA-SDLLLEKPLYAWHATAGVIIAASIAAFAYFYGKKRRRW 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218117601|dbj|BAH03208.1| peroxisomal monodehydroascorbate reductase [Glycine max]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/321 (79%), Positives = 285/321 (88%), Gaps = 1/321 (0%)

Query: 38  SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 97
           SC GGNAVVIGGGYIGMECAASLVINKINVTMVFPE HCMARLFT KIA+YYEEYYKS+G
Sbjct: 1   SCPGGNAVVIGGGYIGMECAASLVINKINVTMVFPEEHCMARLFTSKIANYYEEYYKSRG 60

Query: 98  VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGI 157
           V F+KGTVLSSFD DSNGKV AVNLRDG  L  DMVVVGIGIRPNT LFEGQLTLEKGGI
Sbjct: 61  VNFIKGTVLSSFDFDSNGKVTAVNLRDGTTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGI 120

Query: 158 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD 217
           KV G LQSSNSSVYA+GDVAAFP+K +GETRRLEHVDSARKSA+H V+AIMEP+KT +FD
Sbjct: 121 KVNGMLQSSNSSVYAIGDVAAFPVKAVGETRRLEHVDSARKSARHVVSAIMEPNKTREFD 180

Query: 218 YLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEA 277
           YLPFFYSR+FTLSWQFYGDNVGEVV+YG+ SG+TFGAYWV+K  LVG+FLEGGTKEEYEA
Sbjct: 181 YLPFFYSRIFTLSWQFYGDNVGEVVYYGDMSGSTFGAYWVSKDHLVGAFLEGGTKEEYEA 240

Query: 278 IAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAG 337
           IAKATRL+PV++DL ELE QGL FA+ VS+KP+ S P++ +    L+L K LY  HATAG
Sbjct: 241 IAKATRLRPVIKDLTELERQGLRFAVTVSEKPMASPPIEVRA-SDLLLEKPLYAWHATAG 299

Query: 338 VILAASIAAFAYWYGRRRRRW 358
           VI+AASIA FAY+YG++R RW
Sbjct: 300 VIIAASIAGFAYFYGKKRHRW 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232273|ref|NP_189420.1| monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] gi|50401174|sp|Q9LK94.1|MDAR2_ARATH RecName: Full=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Short=MDAR 2 gi|11994487|dbj|BAB02528.1| cytosolic monodehydroascorbate reductase [Arabidopsis thaliana] gi|14532712|gb|AAK64157.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|22136780|gb|AAM91734.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|332643846|gb|AEE77367.1| monodehydroascorbate reductase (NADH) [Arabidopsis thaliana]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/364 (73%), Positives = 306/364 (84%), Gaps = 9/364 (2%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAASLVIN
Sbjct: 125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV AVNL+
Sbjct: 185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA FP+KL
Sbjct: 245 DGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKL 304

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
            GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G+VVH
Sbjct: 305 FGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVH 364

Query: 244 YGNF-SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQGLGF 301
           +G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +GLGF
Sbjct: 365 FGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGF 424

Query: 302 A-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRR 354
           A   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+WYGRR
Sbjct: 425 AHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRR 484

Query: 355 RRRW 358
           RRRW
Sbjct: 485 RRRW 488

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242062770|ref|XP_002452674.1| hypothetical protein SORBIDRAFT_04g030440 [Sorghum bicolor] gi|241932505|gb|EES05650.1| hypothetical protein SORBIDRAFT_04g030440 [Sorghum bicolor]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/358 (68%), Positives = 292/358 (81%), Gaps = 10/358 (2%)

Query: 4   ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
           ALKL+EFG+ GSDA N+CYLR++ DA++LV+ MKSC GGNAVVIGGGYIGMECAA+LV N
Sbjct: 126 ALKLQEFGIQGSDASNICYLRNIDDADKLVSAMKSCPGGNAVVIGGGYIGMECAAALVTN 185

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
           KI VTMVFPE HCM RLFTPKIA +YE YY SKGV FVKGTVL+SF+ D+ GKV AV L+
Sbjct: 186 KIRVTMVFPEKHCMGRLFTPKIAEFYENYYTSKGVTFVKGTVLTSFEKDTTGKVTAVILK 245

Query: 124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           DG  LP DMVVVGIGIR NTSLFEGQL +E GGIKV G+LQ+S+SSVYAVGDVAAFP+KL
Sbjct: 246 DGRHLPADMVVVGIGIRANTSLFEGQLMMENGGIKVNGQLQTSDSSVYAVGDVAAFPIKL 305

Query: 184 L-GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV 242
             G+ RRLEHVDSAR++A+HAVA+I+EP K    DYLPFFYSRVFTLSWQFYGDNVGEVV
Sbjct: 306 FDGDIRRLEHVDSARRTARHAVASILEPSKNKDIDYLPFFYSRVFTLSWQFYGDNVGEVV 365

Query: 243 HYGNFSGTT--FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLG 300
           H+G+F+ ++  FGAYWVNKGR+ G+FLEGG++EEYEAI+ A R + +V ++ ELE QGL 
Sbjct: 366 HFGDFTSSSPRFGAYWVNKGRIAGAFLEGGSREEYEAISIAVRRKAMVTNMGELEKQGLA 425

Query: 301 FALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 358
            A+  SQK +P + +        ++GK  Y  HATAGV+ A SIAA  YWYGR+RRRW
Sbjct: 426 LAIQESQKEVPDSGL-------AIVGKPTYTWHATAGVVAAVSIAAIGYWYGRKRRRW 476

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.991	0.727	0.733	1.9e-140
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.840	0.645	0.525	2.7e-84
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.832	0.685	0.534	5.8e-82
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.832	0.675	0.513	1.3e-77
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.821	0.596	0.428	2.3e-62
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.675	0.588	0.3	9.4e-27
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.608	0.540	0.348	1.5e-26
UNIPROTKB|F1P4Q6	494	LOC427826 "Uncharacterized pro	0.614	0.445	0.323	1.2e-24
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.756	0.493	0.279	6e-23
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.756	0.493	0.279	6e-23

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 267/364 (73%), Positives = 306/364 (84%)

Query:     4 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 63
             ALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAASLVIN
Sbjct:   125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query:    64 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
             KINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV AVNL+
Sbjct:   185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query:   124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
             DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA FP+KL
Sbjct:   245 DGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKL 304

Query:   184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243
              GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G+VVH
Sbjct:   305 FGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVH 364

Query:   244 YGNFS-GTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQGLGF 301
             +G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +GLGF
Sbjct:   365 FGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGF 424

Query:   302 A-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRR 354
             A   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+WYGRR
Sbjct:   425 AHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRR 484

Query:   355 RRRW 358
             RRRW
Sbjct:   485 RRRW 488

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 162/308 (52%), Positives = 221/308 (71%)

Query:     5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
             L+L +FG+ G+D++N+ YLR++ DA++LV  +K+  GG AVV+GGGYIG+E +A L IN 
Sbjct:   159 LRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINN 218

Query:    65 INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 124
             ++VTMVFPE  CM RLFT  IA++YE YY +KGVK +KGTV S F    NG+V  V L+D
Sbjct:   219 LDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKD 278

Query:   125 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
             G  L  D+V+VG+G +P TSLF+GQ+  +KGGIK     ++S   VYAVGDVA FPLK+ 
Sbjct:   279 GRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 338

Query:   185 GETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
             G+ RR+EHVD +RKSA+ AV AI   +     +++DYLPFFYSR F LSWQFYGDNVG+ 
Sbjct:   339 GDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDS 398

Query:   242 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 297
             V +G+ + +     FGAYWV  G++VG+F+EGG+ +E +A+AK  + +P  E L EL  Q
Sbjct:   399 VLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQ 458

Query:   298 GLGFALAV 305
             G+ FA  +
Sbjct:   459 GISFAAKI 466

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 163/305 (53%), Positives = 213/305 (69%)

Query:     5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
             ++L +FG+ G+DA+N+ YLR+L DA+ L   M++   G AVV+GGGYIG+E  A+L  N 
Sbjct:   128 IRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANN 187

Query:    65 INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 124
             ++VTMV+PE  CM RLFT  IAS+YE YY +KG+  VKGTV S F  +SNG+V  V L+D
Sbjct:   188 LDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKD 247

Query:   125 GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
             G  L  D+V+VG+G RP  SLF+ Q+  EKGG+K  G  ++S   VYA+GDVA FP+KL 
Sbjct:   248 GRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLY 307

Query:   185 GETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
              E RR+EHVD ARKSA+ AV AI    E +   ++DYLP+FYSR F LSWQFYGDNVGE 
Sbjct:   308 NEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGES 367

Query:   242 VHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 297
             V +G+    +    FG+YW+ + ++VG+FLEGG+ EE  AIAK  R QP VE L  L  +
Sbjct:   368 VLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKE 427

Query:   298 GLGFA 302
             GL FA
Sbjct:   428 GLSFA 432

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 157/306 (51%), Positives = 209/306 (68%)

Query:     5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVIN 63
             ++L E G+  +D +N+ YLR++ D++ L   M+     G AV+IGGG++G+E +++L  N
Sbjct:   128 IRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRAN 187

Query:    64 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
                VTMVFPE   + R FT +IAS+YE YY +KG+K +KGTV + F  +S+G+V  V L 
Sbjct:   188 NHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLE 247

Query:   124 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
             DG  L  ++VV G+G RP TSLF+GQL  EKGGIK  G  ++S   VYA+GDVA FP+K+
Sbjct:   248 DGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKM 307

Query:   184 LGETRRLEHVDSARKSAKHAVAAIM--EPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE 240
              G TRR+EH D+ARKSA  AV AI   E  KT   +DYLP+FYSR F LSW+FYG+NVGE
Sbjct:   308 YGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGE 367

Query:   241 VVHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 296
              V +G+    +    FG YWV  G++VG FLEGGT+EE++AIAK  R QP VE L  L  
Sbjct:   368 SVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSE 427

Query:   297 QGLGFA 302
             +GL FA
Sbjct:   428 EGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 132/308 (42%), Positives = 186/308 (60%)

Query:    14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
             G     V Y+R++ADA+ L+  +        V++GGGYIGME AA+ V   ++ T+VFPE
Sbjct:   191 GGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEVAAAAVAWNLDTTIVFPE 248

Query:    74 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
                + RLFTP +A  YEE Y+  GVKFVKG  +++ +  S+G+V AV L DG+ +  D V
Sbjct:   249 DQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTV 308

Query:   134 VVGIGIRPNTSLFEGQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 191
             V+GIG +P    FE  L + K  GGI+V G  ++S   ++A+GDVAAFPLK+     R+E
Sbjct:   309 VIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVE 367

Query:   192 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLS-------WQFYGDNVGEVVHY 244
             HVD AR+SA+H V +++    TD +DYLP+FYSRVF          WQF+GDNVGE V  
Sbjct:   368 HVDHARRSAQHCVKSLLTAH-TDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEV 426

Query:   245 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALA 304
             GNF       +W+  GRL G  +E G+ EE++ + K  R QP+V+         +  AL 
Sbjct:   427 GNFD-PKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query:   305 VSQKPLPS 312
             ++Q  L S
Sbjct:   486 IAQAALQS 493

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 75/250 (30%), Positives = 128/250 (51%)

Query:    12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
             + GSDA  V YLR   DA  L +V+    G +  V+G G+IG+E AAS     ++VT+V 
Sbjct:   119 IPGSDAAGVHYLRSYNDAVALNSVL--VQGSSLAVVGAGWIGLEVAASARQRGVDVTVVE 176

Query:    72 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                  +       +   + + ++ +GV     T L      ++GK   + +RDG+ +  D
Sbjct:   177 TAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGSTVAAD 235

Query:   132 MVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
              V+V +G +PN  L +   L + +GG+ V   L++S+  +YAVGD+AA    LLG   R 
Sbjct:   236 AVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRVRT 295

Query:   191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD--NVGEVVHYGNFS 248
             EH  +A K    A A ++   +  ++  LP+ ++  + L  ++ G   +   VV  GN +
Sbjct:   296 EHWANALKQPAVAAAGML--GRPGEYAELPYLFTDQYDLGMEYVGHAPSCDRVVFRGNVA 353

Query:   249 GTTFGAYWVN 258
             G  F ++W++
Sbjct:   354 GREFLSFWLD 363

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 79/227 (34%), Positives = 121/227 (53%)

Query:    14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
             G D   V  +RDLAD + +   +    G  A+++GGGYIG+E AA      + VT+V   
Sbjct:   118 GGDLAGVHVVRDLADIDAMAPSVTE--GARALIVGGGYIGLEAAAVCAKRGVQVTLVEMA 175

Query:    74 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
                + R+  P+ ++Y+   +   GV   +G  L+   + + G+V    L DG+ LP D+V
Sbjct:   176 DRILQRVAAPETSAYFRALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSELPVDLV 234

Query:   134 VVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH 192
             VVG+GI P T+L E   L LE G I+   + ++S+ S++A GD A+FP K  G   RLE 
Sbjct:   235 VVGVGIAPATALAEAAGLVLENG-IRTDAQGRTSDPSIWAAGDCASFPYK--GGRIRLES 291

Query:   193 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 239
             V +A   A+  VA  M+    D +   P+F+S  + +  Q  G N G
Sbjct:   292 VPNAIDQAE-TVAQNMQGAGKD-YVAQPWFWSDQYDVKLQIAGLNTG 336

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|F1P4Q6 LOC427826 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 286 (105.7 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 74/229 (32%), Positives = 119/229 (51%)

Query:    14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
             G+D +NVC+L+   DA++   V++  SG N V++G  +IGME AA L      +++V  +
Sbjct:   250 GADLQNVCHLQTPEDASK---VLELASGKNLVIVGASFIGMETAAFLSDKAAAISVVEKQ 306

Query:    74 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
                  +   P++     +  +SKGVKF     L       +GKV    L  G +LP D+V
Sbjct:   307 EFPFQKTLGPQVGGVVLKMLQSKGVKFYMKKELHELK-GKDGKVAEAILASGEKLPADVV 365

Query:   134 VVGIGIRPNTSLFEGQLTLE--KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRL 190
             VVGIG+ PN++  +G    +   G I V  R+Q++  +V+A GDV +FP+ LL G+   +
Sbjct:   366 VVGIGVTPNSAFLKGTSIAKDNSGAILVDLRMQTNIPNVFAAGDVVSFPVALLNGDHSSI 425

Query:   191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 239
              H   A   A  ++AA     K  +   +PFF++ +   S  + G   G
Sbjct:   426 HHQQVAE--AHGSIAAFNMLKKQKELHTVPFFWTTMLGRSIHYAGCGKG 472

GO:0005737 "cytoplasm" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 80/286 (27%), Positives = 142/286 (49%)

Query:    14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
             GSD +N+CYLR + +AN + N+     G + V +G  +IGME A++L     +VT++   
Sbjct:   258 GSDLKNICYLRKVEEANIISNLHP---GKHVVCVGSSFIGMEVASALAEKAASVTVISNT 314

Query:    74 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
                +  +F   I       ++ KGVKF     + +   +  G+V  V L +G  L  D++
Sbjct:   315 PEPLP-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLL 373

Query:   134 VVGIGIRPNTSLFEGQ-LTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG-ETRRL 190
             V GIG+ P T   EG  + L+ +G I+V  + +++ S ++A+GDV   PL L   ++  +
Sbjct:   374 VCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINI 433

Query:   191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGEVVHY--GNF 247
             +H  +A+   +H    I+   K      +P+F++  F     +F G N G    Y  G+ 
Sbjct:   434 QHFQTAQAHGQHLGYTIV--GKPQPGPIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDP 491

Query:   248 SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATR--LQPVVEDL 291
                TF  Y++ K ++V +   GG        A+  +  ++  ++DL
Sbjct:   492 ETGTFIRYFLKKDKVV-AVAAGGPSSVASQFAEIFKKGIEVTLKDL 536

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 80/286 (27%), Positives = 142/286 (49%)

Query:    14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
             GSD +N+CYLR + +AN + N+     G + V +G  +IGME A++L     +VT++   
Sbjct:   258 GSDLKNICYLRKVEEANIISNLHP---GKHVVCVGSSFIGMEVASALAEKAASVTVISNT 314

Query:    74 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
                +  +F   I       ++ KGVKF     + +   +  G+V  V L +G  L  D++
Sbjct:   315 PEPLP-VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLL 373

Query:   134 VVGIGIRPNTSLFEGQ-LTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG-ETRRL 190
             V GIG+ P T   EG  + L+ +G I+V  + +++ S ++A+GDV   PL L   ++  +
Sbjct:   374 VCGIGVTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINI 433

Query:   191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGEVVHY--GNF 247
             +H  +A+   +H    I+   K      +P+F++  F     +F G N G    Y  G+ 
Sbjct:   434 QHFQTAQAHGQHLGYTIV--GKPQPGPIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDP 491

Query:   248 SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATR--LQPVVEDL 291
                TF  Y++ K ++V +   GG        A+  +  ++  ++DL
Sbjct:   492 ETGTFIRYFLKKDKVV-AVAAGGPSSVASQFAEIFKKGIEVTLKDL 536

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK94	MDAR2_ARATH	1, ., 6, ., 5, ., 4	0.7335	0.9916	0.7274	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	7e-29
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-25
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	3e-23
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	6e-22
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	2e-21
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	1e-18
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	8e-17
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	4e-16
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	4e-15
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	5e-13
TIGR02053	463	TIGR02053, MerA, mercuric reductase	6e-13
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-12
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	1e-12
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	1e-11
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-11
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-11
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	6e-11
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	2e-10
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	8e-10
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	3e-09
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	5e-09
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	1e-08
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	3e-08
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	9e-08
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	2e-07
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	2e-07
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	1e-06
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-06
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	1e-06
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	2e-06
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	3e-06
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	7e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	9e-06
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	1e-05
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	1e-05
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-05
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-05
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-05
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	3e-05
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	3e-05
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	4e-05
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	6e-05
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	9e-05
PRK10262	321	PRK10262, PRK10262, thioredoxin reductase; Provisi	1e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-04
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	4e-04
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	6e-04
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.001
PLN02507	499	PLN02507, PLN02507, glutathione reductase	0.001
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.003
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	0.003
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  112 bits (283), Expect = 7e-29
 Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 18  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77
             V  LR + D++ ++ +++       VV+GGGYIG+E AA+L      VT+V      +
Sbjct: 121 VEVATLRGVIDSDEILELLEL--PKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLL 178

Query: 78  ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137
           AR    +I++   E  +   +      V+       +GKVV V L DG  L  D+V+V I
Sbjct: 179 ARAD-DEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAI 237

Query: 138 GIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 181
           G RPNT L E  G    E+G I V   L++S   +YA GDVA    
Sbjct: 238 GRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  106 bits (266), Expect = 1e-25
 Identities = 81/309 (26%), Positives = 113/309 (36%), Gaps = 26/309 (8%)

Query: 9   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
                 SD E V  LR   DA  L    +     + VV+G G IG+E A +       VT
Sbjct: 106 PRPPPISDWEGVVTLRLREDAEALKGGAEP--PKDVVVVGAGPIGLEAAEAAAKRGKKVT 163

Query: 69  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGNR 127
           ++        +L  P++A    E  +  GV+ + GT +   +   N  VV  V   DG  
Sbjct: 164 LIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEE 223

Query: 128 LPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGRLQSSNS-SVYAVGDVAAFPLKL 183
           +  D+V++G G RPN  L       L L  G + V  R  +S    VYA GDVA  P   
Sbjct: 224 IKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE 283

Query: 184 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTL----SWQFYGDNVG 239
            G+  R+     A  + +  +AA            L    S V  L    +    G   G
Sbjct: 284 TGKGGRIALWAIAVAAGR--IAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEGKERG 341

Query: 240 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEG-------------GTKEEYEAIAKATRLQP 286
             V      G    A+      LVG  L G                +   A+A A  L  
Sbjct: 342 IDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQELEVLKRIGALALAIGLGD 401

Query: 287 VVEDLAELE 295
            V +L  L+
Sbjct: 402 TVAELDALD 410

Length = 415

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 99.4 bits (248), Expect = 3e-23
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 11  GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV 70
            + G + + V  LR+L D + +   +      N V+IGGGYIG+E A +L     NVT++
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166

Query: 71  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 130
                 + +LF  ++    EE  K   +       L+       G+        G     
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINL----RLNEEVDSIEGEERVKVFTSGGVYQA 222

Query: 131 DMVVVGIGIRPNTSLFE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 177
           DMV++  GI+PN+ L +   L L E G I V  + Q+S  ++YA GDVA
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 95.8 bits (238), Expect = 6e-22
 Identities = 70/275 (25%), Positives = 116/275 (42%), Gaps = 24/275 (8%)

Query: 1   MNMALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL 60
           +          L  +  E    LR   DA RL  V++     + V++G G IG+E AAS 
Sbjct: 106 IATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQP--ERSVVIVGAGTIGLELAASA 163

Query: 61  VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 120
              +  VT++   A  M R   P +  Y  + ++  GV+ +    +       +G+ V +
Sbjct: 164 TQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHV---VDGEKVEL 220

Query: 121 NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 180
            L+ G  L  D+V+ GIGI  N  L          GI +    ++ + +++A GDVA   
Sbjct: 221 TLQSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDEACRTCDPAIFAGGDVAITR 280

Query: 181 LKLLGETRRLEHVDSARKSAKHAVAAIM--EPDKTDKFDYLPFFYSRVFTLSWQFYGDNV 238
           L   G   R E  ++A   A+ A AA++             P+F+S  ++ + QF GD  
Sbjct: 281 LD-NGALHRCESWENANNQAQIAAAAMLGLPLPLLPP----PWFWSDQYSDNLQFIGDMR 335

Query: 239 GEVVH------------YGNFSGTTFGAYWVNKGR 261
           G+               +   +G   GA  +N+GR
Sbjct: 336 GDDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGR 370

Length = 396

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 5/164 (3%)

Query: 16  DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75
           + ENV  L+ + D   L  ++K     N V+IG G+IG+E   +      NV ++  E  
Sbjct: 124 NLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183

Query: 76  CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135
            +   F  +I    EE  +  GV+      + S   +   + V     D      D+V+V
Sbjct: 184 ILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT---DKGEYEADVVIV 240

Query: 136 GIGIRPNTSLFEGQL--TLEKGGIKVTGRLQSSNSSVYAVGDVA 177
             G++PNT   E     TL+ G I V    ++S  ++YA GD A
Sbjct: 241 ATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA 284

Length = 444

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           GSD   V   R + D   +++  ++     AVVIGGG +G+E A  L    + VT+V   
Sbjct: 120 GSDLPGVFVYRTIDDVEAMLDCARNKKK--AVVIGGGLLGLEAARGLKDLGMEVTVVHIA 177

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              M R              +  G+K +      + ++    KV  V   DG  +P D+V
Sbjct: 178 PTLMERQLDRTAGRLLRRKLEDLGIKVLLEKN--TEEIVGEDKVEGVRFADGTEIPADLV 235

Query: 134 VVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 179
           V+ +GIRPN  L  E  L + + GI V   +Q+S+  +YAVG+ A  
Sbjct: 236 VMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEH 281

Length = 793

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 80.3 bits (199), Expect = 8e-17
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 46  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 105
           V+GGG IG E A  L      VT+V   A  +A L  P+++S  +      GV  +  + 
Sbjct: 146 VVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQ 205

Query: 106 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQ 164
           L    ++     +   L  G  +  D V+   G+RPNT+L     L + + GI V   LQ
Sbjct: 206 LQG--LEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQ 262

Query: 165 SSNSSVYAVGDVA 177
           +S   +YA+GD A
Sbjct: 263 TSAPDIYALGDCA 275

Length = 377

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 28/185 (15%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
           V++GGGYIG+E A   V   +   VT+V      +     P+I+    +  +  GVK + 
Sbjct: 177 VIVGGGYIGLEFA--SVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILL 233

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK-------- 154
            T +++ +   +G +V +   +G  +  D V+V IG +PNT      L LE         
Sbjct: 234 NTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT----DGLGLENAGVELDDR 289

Query: 155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTD 214
           G IKV  ++ ++   +YA+GDV   P+        L HV  A    + A   I    K  
Sbjct: 290 GFIKVDDQMTTNVPGIYAIGDVIGGPM--------LAHV--AMAEGRIAAENIAG-GKRT 338

Query: 215 KFDYL 219
             DY 
Sbjct: 339 PIDYR 343

Length = 454

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 75.7 bits (187), Expect = 4e-15
 Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 33/187 (17%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY--------EEYYKSK 96
           V++GGG IG+E A+ L    + VT+V  EA         +I                K  
Sbjct: 184 VIVGGGVIGLEWASMLADFGVEVTVV--EA-------ADRILPTEDAELSKEVARLLKKL 234

Query: 97  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS---LFEGQLT 151
           GV+ V G  +    +  +G V+ V   +G    L  D V+V +G RPNT    L    + 
Sbjct: 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDID 294

Query: 152 LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 211
           +E G I++    Q+    +YA+GDV   P         L HV  A        A  +   
Sbjct: 295 VEGGFIQIDDFCQTKERHIYAIGDVIGEPQ--------LAHVAMAEGE---MAAEHIAGK 343

Query: 212 KTDKFDY 218
           K   FDY
Sbjct: 344 KPRPFDY 350

Length = 472

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           G+D + V   R + D + ++ + +      A VIGGG +G+E A  L    ++V+++   
Sbjct: 115 GADKKGVYVFRTIEDLDAIMAMAQRFK--KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA 172

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              MA+          +   + KG+ F+      + ++    K   +  +DG+ L  D++
Sbjct: 173 PGLMAKQLDQTAGRLLQRELEQKGLTFLLEK--DTVEIVGATKADRIRFKDGSSLEADLI 230

Query: 134 VVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAA 178
           V+  GIRPN  L          GI V   +Q+S+  +YAVG+ A 
Sbjct: 231 VMAAGIRPNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
            VIGGG IG+E A +       VT++   +  +     P+I++  EE    +G++ V   
Sbjct: 170 AVIGGGAIGVELAQAFARLGSEVTILQ-RSDRLLPREEPEISAAVEEALAEEGIEVVTSA 228

Query: 105 VLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKV 159
            + +  V   GK++ V    G   +  D ++V  G RPNT        G    E+GGI V
Sbjct: 229 QVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILV 288

Query: 160 TGRLQSSNSSVYAVGDV 176
              L++SN  +YA GDV
Sbjct: 289 DETLRTSNPGIYAAGDV 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 43  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
             VV+GGGYIG+E A++L      VT+V      + R F  +IA   +E  +  G++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 103 GTVLSSFDVDSNGKVVAVNLRDG 125
            T +   + + +G VV +   DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 68.6 bits (169), Expect = 1e-12
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 21/149 (14%)

Query: 44  AVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKG 97
            VVIGGGYIG+E A   ASL      VT+V  EA  + R+      +I+   E   K +G
Sbjct: 175 LVVIGGGYIGVEFASAYASL---GAEVTIV--EA--LPRILPGEDKEISKLAERALKKRG 227

Query: 98  VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTS---LFEGQLT 151
           +K   G      +   +G  V V L DG +  T   D V+V +G RPNT    L E  + 
Sbjct: 228 IKIKTGAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVK 285

Query: 152 LEKGGIKVTGRLQSSNSSVYAVGDVAAFP 180
            ++G I+V  +L+++  ++YA+GD+   P
Sbjct: 286 TDRGFIEVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVKFV 101
           V+IGGG IG+E A+        VT++  E   + R+      +++   ++  K KGVK +
Sbjct: 174 VIIGGGVIGVEFASIFASLGSKVTVI--EM--LDRILPGEDAEVSKVLQKALKKKGVKIL 229

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 157
             T +++ + + +         +   L  + V+V +G +PNT        G    E+G I
Sbjct: 230 TNTKVTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRI 289

Query: 158 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD 217
            V   ++++   +YA+GDV   P+        L HV  A      A   I    +    D
Sbjct: 290 VVDEYMRTNVPGIYAIGDVIGGPM--------LAHV--ASHEGIVAAENIAG-KEPAHID 338

Query: 218 YLP 220
           Y  
Sbjct: 339 YDA 341

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           V+IGGGYIG+E A         VT++      + R     +A+   E  + +G+      
Sbjct: 175 VIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNA 233

Query: 105 VLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFEGQLTLEK--------G 155
                + D +G  V ++   G   +    ++V +G  PNT   +  L LE         G
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT---DD-LGLEAAGVETDARG 289

Query: 156 GIKVTGRLQSSNSSVYAVGDV 176
            IKV  +L+++N  +YA GD 
Sbjct: 290 YIKVDDQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 42/202 (20%)

Query: 10  FGLSGSDAENVCYLRDLADANRLVNVMKSC-------SGGNA----VVIGGGYIGMECAA 58
           FG+ G+ AE    L+ L DA RL   +              A    V++GGG  G+E A 
Sbjct: 114 FGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAG 172

Query: 59  SL------------VIN-KINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVKFVK 102
            L            V   ++ V +V  EA    R+   F PK++ Y E   +  GV+ + 
Sbjct: 173 ELAERLHRLLKKFRVDPSELRVILV--EA--GPRILPMFPPKLSKYAERALEKLGVEVLL 228

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSL--FEGQLTLEKGGIKV 159
           GT ++   V  +G    V L+DG   +P D VV   G+R +  L    G  T  +G + V
Sbjct: 229 GTPVTE--VTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVV 282

Query: 160 TGRLQS-SNSSVYAVGDVAAFP 180
              LQ   +  ++A GD AA  
Sbjct: 283 NPTLQVPGHPDIFAAGDCAAVI 304

Length = 405

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 62.9 bits (154), Expect = 6e-11
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 24/184 (13%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKG 103
            VIGGG IG+E   +L    + VT+   E    +  L  P+++   ++   SK  K   G
Sbjct: 173 AVIGGGVIGLELGQALSRLGVKVTVF--ERGDRILPLEDPEVSKQAQKIL-SKEFKIKLG 229

Query: 104 TVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNT---SLFEGQLTLEKGG-IK 158
             ++S +   + KV  +        +  D V+V  G RPNT    L    + L++ G   
Sbjct: 230 AKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPV 289

Query: 159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV--DSARKSAKHAVAAIMEPDKTDKF 216
           V    Q+S   +YA GDV   P         L H   D  R +A++A       D     
Sbjct: 290 VDEHTQTSVPGIYAAGDVNGKPP--------LLHEAADEGRIAAENAAG-----DVAGGV 336

Query: 217 DYLP 220
            Y P
Sbjct: 337 RYHP 340

Length = 460

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 35/166 (21%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           G +++    LR+L D + +   +K+     A+V+G GYI +E   +L    ++ T++   
Sbjct: 121 GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRS 180

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              + +L    +     +    + + +     + +  ++ N     V  + G     DM+
Sbjct: 181 DK-INKLMDADMNQPILDELDKREIPYRLNEEIDA--INGN----EVTFKSGKVEHYDMI 233

Query: 134 VVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 177
           + G+G  PN+   E   + L +KG I V  + +++  ++YA+GD+ 
Sbjct: 234 IEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 41  GGNAVVIGGGYIGMECAASLVINKINVTMVF------PEAHCMARLFTPKIASYYEEYYK 94
           G + VVIGGG   +E A  L      VT+V        E   + RL             K
Sbjct: 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLK------------K 190

Query: 95  SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFEGQLTLE 153
           +  ++ +  TV+     D    VV  N++   + LP D V + IG  PNT L +G   L+
Sbjct: 191 NVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLD 250

Query: 154 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
           + G I V   +++S   ++A GDVA    + +
Sbjct: 251 ENGYIVVDEEMETSVPGIFAAGDVADKNGRQI 282

Length = 305

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 29/168 (17%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---TPKIASYYEEYYKSKGV 98
            + V+ G G IGME A  L    ++VT+V      + R       +++    + YK  GV
Sbjct: 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKLGV 228

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEG-------- 148
           K + GT + S D + +   V V+ +DG    L  D V+  IG  P     EG        
Sbjct: 229 KILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV---EGYGLEKTGV 285

Query: 149 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 196
            LT ++G I +   ++++   +YA+GDV A   KL      L HV  A
Sbjct: 286 ALT-DRGAIAIDDYMRTNVPHIYAIGDVTA---KLQ-----LAHVAEA 324

Length = 466

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 57.1 bits (139), Expect = 5e-09
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 45  VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 103
            V+G GYI +E A   V+N +   T +F       R F P I     E  + KG++    
Sbjct: 171 AVVGAGYIAVEFAG--VLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTN 228

Query: 104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR- 162
            V  + + +++G +  + L DG  L  D ++  IG  PNT      L LE  G+K+  + 
Sbjct: 229 AVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTD----GLGLENAGVKLNEKG 283

Query: 163 -------LQSSNSSVYAVGDV 176
                    ++   +YAVGDV
Sbjct: 284 YIIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 44  AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 103
            ++ GGGYI +E A       +  T+++     +   F   +        + +G++ +  
Sbjct: 169 ILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRILPE 227

Query: 104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF----EGQLTLEKGGIKV 159
             ++S   D +G++ A  L     +  D+V+   G  PNT+       G    + G I V
Sbjct: 228 DSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286

Query: 160 TGRLQSSNSSVYAVGDV 176
               ++S  S+YAVGDV
Sbjct: 287 DEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 46  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 105
           +IGGG IG+E  A L     +   V   A  +     P +A+  ++Y +  G+ F+    
Sbjct: 162 IIGGGNIGLE-FAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAH 220

Query: 106 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLT----LEKGGIKVTG 161
            +    D +  +V            D ++   G +PNT     + T     E+G IKV  
Sbjct: 221 TTEVKNDGDQVLVVTE---DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDD 277

Query: 162 RLQSSNSSVYAVGDV 176
             Q+S   V+AVGDV
Sbjct: 278 YCQTSVPGVFAVGDV 292

Length = 438

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 48/200 (24%), Positives = 67/200 (33%), Gaps = 47/200 (23%)

Query: 11  GLSGSDAENVCYLRDLADAN---RLVNVMKSCS----GGNAVVIGGGYIGMECAASLVIN 63
           G+ G +   V        A      VN   +      G   VVIGGG   M+ A +    
Sbjct: 242 GIPGENLGGVY------SAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRL 295

Query: 64  KI-NVTMVF--PEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGK--V 117
              +VT+V+       M        AS  E E+ K +GV+F           D      V
Sbjct: 296 GAESVTIVYRRGREE-MP-------ASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGV 347

Query: 118 VAVNLRDGNR----------------LPTDMVVVGIGIRPNTSLFEGQLTLE---KGGIK 158
             V +  G                  LP D+V+  IG  PN  +      LE    G I 
Sbjct: 348 EFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTII 407

Query: 159 VT-GRLQSSNSSVYAVGDVA 177
                 ++S   V+A GD+ 
Sbjct: 408 ADDETGRTSLPGVFAGGDIV 427

Length = 457

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 36  MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 95
           +  C G   +V+G  Y+ +ECA  L    ++VT++      + R F    A+   E+ + 
Sbjct: 176 LPYCPG-KTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQDCANKVGEHMEE 232

Query: 96  KGVKFVKGTVLSSFD-VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 154
            GVKF +  V    + +++   V   +  +G     D V++ IG    T     +L LE 
Sbjct: 233 HGVKFKRQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTR----KLNLEN 288

Query: 155 GGIKV---TGRL------QSSNSSVYAVGDVA 177
            G+K+   TG++      Q++   +YAVGD+ 
Sbjct: 289 VGVKINKKTGKIPADEEEQTNVPYIYAVGDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           ++ G G IG E A+      + VT++      ++ L   +I+     + +  GV      
Sbjct: 179 IIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL-DDEISDALSYHLRDSGVTIRHNE 237

Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE--------KGG 156
            +   +   +G +V  +L+ G ++  D ++   G   NT      L LE        +G 
Sbjct: 238 EVEKVEGGDDGVIV--HLKSGKKIKADCLLYANGRTGNTD----GLNLENAGLEADSRGQ 291

Query: 157 IKVTGRLQSSNSSVYAVGDVAAFP 180
           +KV    Q++   +YAVGDV  FP
Sbjct: 292 LKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 37/185 (20%)

Query: 41  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE--YYKSKGV 98
           G + VVIGGG   ++ A +    ++       E HC+ R     + +  EE  + + +GV
Sbjct: 272 GKSVVVIGGGNTAVDSART--ALRLGA-----EVHCLYRRTREDMTARVEEIAHAEEEGV 324

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRD---------GNRLP-----------TDMVVVGIG 138
           KF           D  G V AV  R          G R              D V+V IG
Sbjct: 325 KFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG 384

Query: 139 IRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 196
              N  + E     T E+G I V    ++S   V+A GD+      +LG    +  +   
Sbjct: 385 NGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI------ILGAATVIRAMGQG 438

Query: 197 RKSAK 201
           +++AK
Sbjct: 439 KRAAK 443

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 29/193 (15%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           V++GGGYI  E A         VT+V   +  + R     I+  + E  K K      G 
Sbjct: 173 VIVGGGYIAAEFAHVFSALGTRVTIVN-RSTKLLRHLDEDISDRFTEIAKKK-WDIRLGR 230

Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT--GR 162
            +++ + D +G  V + L DG+ +  D+++V  G  PN       L  E  G++V   GR
Sbjct: 231 NVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGD----LLDAEAAGVEVDEDGR 284

Query: 163 L------QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA-KHAVAAIMEPDKTDK 215
           +      ++S   V+A+GDV++ P +       L+HV +A     KH +     P+   K
Sbjct: 285 IKVDEYGRTSARGVWALGDVSS-PYQ-------LKHVANAEARVVKHNLL---HPNDLRK 333

Query: 216 FDYLPFFYSRVFT 228
             +  F  S VFT
Sbjct: 334 MPH-DFVPSAVFT 345

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 21/150 (14%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT---PKIASYYEEYYKSKGVKFV 101
            VIG G IG+E  +  V  ++   +   EA  +         ++A    + +  +G+   
Sbjct: 187 AVIGAGVIGLELGS--VWRRLGAEVTILEA--LPAFLAAADEQVAKEAAKAFTKQGLDIH 242

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG--- 156
            G  +        G  VA    DG    L  D ++V IG  PNT      L LE  G   
Sbjct: 243 LGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT----DGLGLEAVGLKL 298

Query: 157 -----IKVTGRLQSSNSSVYAVGDVAAFPL 181
                I V    +++  +VYA+GDV   P+
Sbjct: 299 DERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328

Length = 475

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 8/178 (4%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + GS+ ++    R + D N +    +    G   V+GGG +G+E A +L    +   ++ 
Sbjct: 118 IKGSETQDCFVYRTIEDLNAIEACARRSKRG--AVVGGGLLGLEAAGALKNLGVETHVIE 175

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGNRLP 129
                MA               +S GV+    T  ++ ++   G      +R  DG+ L 
Sbjct: 176 FAPMLMAEQLDQMGGEQLRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADGSELE 233

Query: 130 TDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 185
            D +V   GIRP   L    G     +GGI +    Q+S+  +YA+G+ A++  ++ G
Sbjct: 234 VDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG 291

Length = 847

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 25/146 (17%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGVKF 100
           +++GGG IG E A+        VT+V  E   MA    P     IA    E  ++ GVK 
Sbjct: 174 LIVGGGVIGCEFASIYSRLGTKVTIV--E---MAPQLLPGEDEDIAHILREKLENDGVKI 228

Query: 101 VKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGG-- 156
             G  L   +   + K  A+   +G+   +  + V+V +G +P       QL LEK G  
Sbjct: 229 FTGAALKGLN---SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ----QLNLEKAGVQ 281

Query: 157 -----IKVTGRLQSSNSSVYAVGDVA 177
                I V   +Q++   +YA GDV 
Sbjct: 282 FSNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           +VIG   + +E A +       VT V   +  +++   P +    E  ++ +G++ +K T
Sbjct: 182 LVIGASVVALELAQAFARLGSRVT-VLARSRVLSQE-DPAVGEAIEAAFRREGIEVLKQT 239

Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTG 161
             S  D +    ++  N      L  + ++V  G  PNT     +   +  E+G I++  
Sbjct: 240 QASEVDYNGREFILETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDE 296

Query: 162 RLQSSNSSVYAVGDVAAFP 180
            LQ++ S +YA GD    P
Sbjct: 297 HLQTTVSGIYAAGDCTDQP 315

Length = 468

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 31/158 (19%)

Query: 41  GGNAVVIGGGYIGMECA-ASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYK--SK 96
           G + VV+GGG   M+ A A+L +  +  VT+V+       +   P   ++ EEY +    
Sbjct: 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT----KQEMP---AWREEYEEALED 720

Query: 97  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR----------------LPTDMVVVGIGIR 140
           GV+F +  +L+    D++G +    ++ G                  L  D V+  IG +
Sbjct: 721 GVEFKE--LLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778

Query: 141 PNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDV 176
            +T L +  G    +KG   V    ++S ++VY +GDV
Sbjct: 779 VDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 18/146 (12%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
            V+GGG   +E A  L + +I   VT+V    H   +    KI    +   K+  ++F+ 
Sbjct: 144 AVVGGGDSAIEEA--LYLTRIAKKVTLV----HRRDKFRAEKI--LLDRLKKNPKIEFLW 195

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLTLEKGG- 156
            + +   ++  + KV  V +++        L  D V + IG  PNT L +G L L++ G 
Sbjct: 196 NSTVK--EIVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELDENGY 253

Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPLK 182
           I     +++S   V+A GDV     +
Sbjct: 254 IVTDEGMRTSVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK-GVKFVKG 103
           V++GGG+I  E A       + VT+V   +  + R     I+  + E    +  V+  + 
Sbjct: 170 VIVGGGFIAAEFAHVFSALGVRVTVV-NRSGRLLRHLDDDISERFTELASKRWDVRLGRN 228

Query: 104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT--G 161
            V     V  +G  V + L DG+ +  D+++V  G  PN       L     G+ V   G
Sbjct: 229 VV----GVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD----LLDAAAAGVDVDEDG 280

Query: 162 RL------QSSNSSVYAVGDVAA-FPLK 182
           R+      ++S   V+A+GDV++ + LK
Sbjct: 281 RVVVDEYQRTSAEGVFALGDVSSPYQLK 308

Length = 451

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 46/181 (25%)

Query: 33  VNVMKSCS---------GGNAVVIGGGYIGME-CAASLVINKINVTMVF--PEAHCMARL 80
           VN+M + S         G    V+GGG   M+    +  +    VT+V+   E    ARL
Sbjct: 553 VNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL 612

Query: 81  FTPKIASYYEEYY--KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DGNR-- 127
                    EE    K +G++F+       +  D  G V  V L+          G R  
Sbjct: 613 ---------EEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRP 663

Query: 128 ---------LPTDMVVVGIGIRPN---TSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGD 175
                    +  D+V+V +G+ PN    S   G     KG I V   +QSS   +YA GD
Sbjct: 664 VAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGD 723

Query: 176 V 176
           +
Sbjct: 724 I 724

Length = 752

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 39/200 (19%)

Query: 10  FGLSGSDAENVCYLRDLADA----NRLVNVMKSCSGGNA-----------VVIGGGYIGM 54
           F + G + E   +L+++  A     R+V  ++  S               VV+GGG  G+
Sbjct: 128 FNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGV 186

Query: 55  ECAASLV-INKINVTMVFPE--AHCMARLF--TPKIASYYEEYYKSKGVKFVKGTVLSSF 109
           E AA L    + +V  + PE    C   +     ++   +++  +  G + ++       
Sbjct: 187 EFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRR---LGV 243

Query: 110 DVDSNGKVVAVN-----LRDGNRLPTDMVV--VGIGIRPNTSLFEGQLTLEK---GGIKV 159
           D+ +   V  V      L+DG  +PT +VV   G+G  P T     QL ++K   G I V
Sbjct: 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTK----QLKVDKTSRGRISV 299

Query: 160 TGRLQSSN-SSVYAVGDVAA 178
              L+     +V+A+GD AA
Sbjct: 300 DDHLRVKPIPNVFALGDCAA 319

Length = 424

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 24/115 (20%)

Query: 45  VVIGGGYIGMECAASLV--INKINVTMVFPEAHCMARLFTP-------------KIASYY 89
           V++GGG+ G+  A  L   +  + +T+V    +    LFTP             +IA   
Sbjct: 7   VILGGGFGGLSAAKRLARKLPDVEITLVDRRDY---HLFTPLLYEVATGTLSESEIAIPL 63

Query: 90  EEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143
               +  G V+FV+G V    D+D + K V   L D   +  D +VV +G   N 
Sbjct: 64  RALLRKSGNVQFVQGEVT---DIDRDAKKVT--LADLGEISYDYLVVALGSETNY 113

Length = 405

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 25/186 (13%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
              V++G GYI +E A  L        +V      + R F   I+    E Y+ +G+   
Sbjct: 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVH 225

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKVT 160
           K +     +    GK+V ++  DG  +   D ++  IG +PNT      L LE  GIK+ 
Sbjct: 226 KLSKPVKVEKTVEGKLV-IHFEDGKSIDDVDELIWAIGRKPNTK----GLGLENVGIKLN 280

Query: 161 GR-------LQSSN-SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 212
            +        Q++N   +YA+GDV            ++E    A  + +     +     
Sbjct: 281 EKGQIIVDEYQNTNVPGIYALGDV----------VGKVELTPVAIAAGRKLSERLFNGKT 330

Query: 213 TDKFDY 218
            DK DY
Sbjct: 331 DDKLDY 336

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 36/166 (21%)

Query: 45  VVIGGGYIGMECAASLV------INKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKG 97
           VVIGGG + M+ A S+         ++NV +       + R F    A   E E    +G
Sbjct: 422 VVIGGGNVAMDIARSMARLQKMEYGEVNVKVT-----SLERTFEEMPADMEEIEEGLEEG 476

Query: 98  VKFVKGTVLSSFDVDSNGKVVAVNLR------DGNR-------------LPTDMVVVGIG 138
           V    G       ++ N KV  V  +      D                +  DMVV  IG
Sbjct: 477 VVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG 535

Query: 139 IRPNTSLF----EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 180
             P+ S      + +L   +G I      Q+S   ++A GD+   P
Sbjct: 536 QAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGP 581

Length = 604

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 46/180 (25%)

Query: 33  VNVMKS---------CSGGNAVVIGGGYIGMECAASLVINKINVTMVF--PEAHCMARLF 81
           VN+MK+           G    V+GGG + M+ A + +     V +V+   E    AR+ 
Sbjct: 264 VNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARV- 322

Query: 82  TPKIASYYEEYY--KSKGVKFVKGTVLSSFDVDSNGKVVAVNL---------RDGNR--- 127
                   EE +  K +GV F   T       D NG V  +             G R   
Sbjct: 323 --------EEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPV 374

Query: 128 --------LPTDMVVVGIGIRPN---TSLFEGQLTLEKGGIKVTGR-LQSSNSSVYAVGD 175
                   L  D V++ +G  PN   +S  +G    ++G I        +S   V+A GD
Sbjct: 375 EIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGD 434

Length = 464

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR 162
            V     V   G   A+ L DG  LP D ++   G R    L E  L L E G ++V   
Sbjct: 207 EVHEGAPVTR-GPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPT 265

Query: 163 LQS-SNSSVYAVGDVAAFP 180
           LQS S+  V+A GD A   
Sbjct: 266 LQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +++G  YIG+E A  L  N++   +         R F  + +    EY K +G  F+
Sbjct: 183 GKTLIVGASYIGLETAGFL--NELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFL 240

Query: 102 KGTVLSSFD-VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT---SLFEGQLTLEKGGI 157
           +G V  + + +D     + V   DG     D V+   G +P+    +L    + + K   
Sbjct: 241 EGVVPINIEKMDDK---IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNK 297

Query: 158 KVTGRLQSSNSSVYAVGDVA 177
            +     ++  +++AVGDV 
Sbjct: 298 IIAPNDCTNIPNIFAVGDVV 317

Length = 499

>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 135 VGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QSSNSSVYAVGDV 176
           V IG  PNT++FEGQL LE G IKV   +     Q+S   V+A GDV
Sbjct: 242 VAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDV 288

Length = 321

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 45  VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 103
            + G GYI +E     V+N++   + +F   + + R F   I +  E   K   +  +  
Sbjct: 241 GIAGSGYIAVELIN--VVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITH 298

Query: 104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVT 160
             +   +      +             D V+  +G  PNT     +   +   KG IKV 
Sbjct: 299 ANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD 358

Query: 161 GRLQSSNSSVYAVGD 175
              ++S   +YAVGD
Sbjct: 359 DNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 46  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK----IASYYEEYYKSKGVKFV 101
           ++GGGYIG+E A+        VT++  EA   A LF P+    IA       + +GV  +
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL--EA---ASLFLPREDRDIADNIATILRDQGVDII 217

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 157
               +    +  +   V V+         D +++  G +P T+       G    E+G I
Sbjct: 218 LNAHVER--ISHHENQVQVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAI 274

Query: 158 KVTGRLQSSNSSVYAVGDV 176
            V   L ++  +++A+GDV
Sbjct: 275 VVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 28/165 (16%)

Query: 40  SGGNAVVIGGGYIGMECAA-SLVINKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKG 97
            G   VVIGGG   M+CA  +L +   +VT  + E         P  A+  E      +G
Sbjct: 261 KGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEG 320

Query: 98  VKFVKGTVLSSFDVDSNGKVVAVNL-------------RDGN--------RLPTDMVVVG 136
           V+ +      +F  +  G+V  V               R G             D V++ 
Sbjct: 321 VERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILA 380

Query: 137 IGIRPNTSLF----EGQLTLEKGGIKV-TGRLQSSNSSVYAVGDV 176
           IG   + +       G    ++G IKV     Q+S   V+A GD 
Sbjct: 381 IGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDA 425

Length = 457

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 114 NGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSN 167
             KV  +  +D N     +L  D V V IG+ PNT   +  + L  +G I +  R ++S 
Sbjct: 418 GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSV 477

Query: 168 SSVYAVGDVAAFPLK 182
             ++A GDV   P K
Sbjct: 478 PGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 44  AVVIGGGYIGMECAASLVINKINVTM-VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
           AVV+GGGYI +E A+  +   +  T+ +F       R F  ++ +      + +G+    
Sbjct: 206 AVVLGGGYIAVEFAS--IWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHP 263

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS---LFEGQLTLEK-GGIK 158
            T L+       G  + V    G     D+V+   G  PNT    L    + L+K G +K
Sbjct: 264 RTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVK 321

Query: 159 VTGRLQSSNSSVYAVGDV 176
           V    +++  S++A+GDV
Sbjct: 322 VDEYSRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 16/119 (13%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYY-------------- 89
           V+IGGG  G+  A  L    + V ++  E   C  R   PK                   
Sbjct: 3   VIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLALP 62

Query: 90  EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 148
           EE YK  GV+ + GT +   D      VV  ++  G  +  D +++  G RP      G
Sbjct: 63  EEVYKEFGVEVLLGTEVVDIDRG-EKTVVLKDVETGREITYDKLIIATGARPRIPGIPG 120

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 33/166 (19%)

Query: 38  SCSGGNAVVIGGGYIGMECA-ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 96
              G   VV+GGG   M+C   ++ +   +VT  +            ++A+  EE     
Sbjct: 279 DVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREE----- 333

Query: 97  GVKFVKGTVLSSFDVDSNGKVVAVNL---------RDGNR-----------LPTDMVVVG 136
           GV+F+        + D +G+V  V L          DG R           LP D+V++ 
Sbjct: 334 GVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMA 393

Query: 137 IGIRP-NTSLFEGQ-LTLEKGGIKVTG-----RLQSSNSSVYAVGD 175
            G +P       G  +TL+  G  +TG       Q++N  ++A GD
Sbjct: 394 FGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGD 439

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 45/206 (21%)

Query: 41  GGNAVVIGGGYIGMECA-ASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKS--K 96
           G + VV+GGG   M+ A A+L +  +  VT+V+       R     + +  EE  ++   
Sbjct: 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVY-------RRTKRYMPASREELEEALED 718

Query: 97  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR----------------LPTDMVVVGIGIR 140
           GV F +     SF+   +G +    ++ G                  LP D V+  +G +
Sbjct: 719 GVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775

Query: 141 PNTSLFE--GQLTLEKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 197
            +T L +  G    E G   V     +++ ++V+ +GD         G    +E +   R
Sbjct: 776 VDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDA------NRGPATIVEAIADGR 829

Query: 198 KSAKHAVAAIMEPD--KTDKFDYLPF 221
           K+A     AI+  +   +D     P 
Sbjct: 830 KAAN----AILSREGLNSDVDKVFPI 851

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02507	499	glutathione reductase	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02546	558	glutathione reductase	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.98
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.95
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.95
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.95
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.94
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.92
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.92
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.9
PRK10262	321	thioredoxin reductase; Provisional	99.9
PRK12831	464	putative oxidoreductase; Provisional	99.9
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.87
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.87
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.87
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.86
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.86
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.86
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.85
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.85
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.84
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.84
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.83
PRK13984	604	putative oxidoreductase; Provisional	99.83
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.82
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.82
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.82
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.81
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.81
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.81
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.79
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.78
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.71
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.71
PLN02852	491	ferredoxin-NADP+ reductase	99.7
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.64
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.63
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.58
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.56
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.37
KOG2755	334	consensus Oxidoreductase [General function predict	99.32
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.31
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.22
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.14
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.08
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.04
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.98
COG2081	408	Predicted flavoproteins [General function predicti	98.98
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.91
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.89
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.85
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.83
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.8
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.8
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.79
PRK06847	375	hypothetical protein; Provisional	98.78
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.78
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	98.68
PRK07236	386	hypothetical protein; Provisional	98.67
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.66
PRK10262	321	thioredoxin reductase; Provisional	98.64
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.64
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.63
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.6
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.6
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.6
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.59
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.56
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.56
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.56
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.56
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.55
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.53
PRK06834	488	hypothetical protein; Provisional	98.52
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.52
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.51
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.51
PRK07045	388	putative monooxygenase; Reviewed	98.51
PRK08163	396	salicylate hydroxylase; Provisional	98.5
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.49
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.49
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.49
PLN02463	447	lycopene beta cyclase	98.49
PRK07588	391	hypothetical protein; Provisional	98.47
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.47
PRK08244	493	hypothetical protein; Provisional	98.47
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.46
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	98.45
PRK12831	464	putative oxidoreductase; Provisional	98.45
PRK05868	372	hypothetical protein; Validated	98.45
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.44
PLN02661	357	Putative thiazole synthesis	98.44
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.43
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.42
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.42
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.42
PRK06184	502	hypothetical protein; Provisional	98.42
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.41
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.41
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.39
PRK10157	428	putative oxidoreductase FixC; Provisional	98.38
PRK09126	392	hypothetical protein; Provisional	98.38
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.37
PRK06116	450	glutathione reductase; Validated	98.37
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.37
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.36
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.36
PLN02852	491	ferredoxin-NADP+ reductase	98.36
PRK06753	373	hypothetical protein; Provisional	98.36
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.36
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.34
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.34
PRK08013	400	oxidoreductase; Provisional	98.33
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.32
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.32
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.31
PRK07190	487	hypothetical protein; Provisional	98.3
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.3
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.3
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.3
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.29
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.28
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.27
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.27
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.26
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.26
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.26
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.26
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.26
PLN02697	529	lycopene epsilon cyclase	98.25
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.25
PRK10015	429	oxidoreductase; Provisional	98.24
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.24
PRK06475	400	salicylate hydroxylase; Provisional	98.23
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.23
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.21
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.2
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.19
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.19
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.19
PTZ00188	506	adrenodoxin reductase; Provisional	98.18
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.16
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.16
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.15
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.15
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.15
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.14
PRK06185	407	hypothetical protein; Provisional	98.12
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.12
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.1
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.09
PRK06370	463	mercuric reductase; Validated	98.08
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.07
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.07
TIGR02053	463	MerA mercuric reductase. This model represents the	98.05
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.05
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.05
COG0579	429	Predicted dehydrogenase [General function predicti	98.04
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.04
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	98.01
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.01
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.0
PRK07538	413	hypothetical protein; Provisional	98.0
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.99
PRK06996	398	hypothetical protein; Provisional	97.99
PRK14694	468	putative mercuric reductase; Provisional	97.99
PRK13984	604	putative oxidoreductase; Provisional	97.99
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.98
PRK11445	351	putative oxidoreductase; Provisional	97.98
PRK06126	545	hypothetical protein; Provisional	97.98
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.97
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.97
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.96
PLN02546	558	glutathione reductase	97.96
PRK13748	561	putative mercuric reductase; Provisional	97.96
PRK09897	534	hypothetical protein; Provisional	97.96
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.96
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.96
PTZ00058	561	glutathione reductase; Provisional	97.95
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.95
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.94
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.94
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.93
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.92
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.92
PLN02507	499	glutathione reductase	97.9
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.88
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.88
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.87
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.86
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.81
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.81
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.79
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.78
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.78
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.77
PRK07121	492	hypothetical protein; Validated	97.75
PRK14727	479	putative mercuric reductase; Provisional	97.74
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.74
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.72
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.71
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.7
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.7
PRK08274	466	tricarballylate dehydrogenase; Validated	97.7
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.68
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.65
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.63
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.62
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.61
PLN02985	514	squalene monooxygenase	97.61
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.6
PRK08401	466	L-aspartate oxidase; Provisional	97.6
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.59
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.59
PTZ00052	499	thioredoxin reductase; Provisional	97.58
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.55
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.51
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.51
PRK08275	554	putative oxidoreductase; Provisional	97.48
PRK07804	541	L-aspartate oxidase; Provisional	97.47
PRK08294	634	phenol 2-monooxygenase; Provisional	97.47
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.46
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.46
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.45
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.44
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.41
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.41
PRK06175	433	L-aspartate oxidase; Provisional	97.4
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.37
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.37
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.35
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.35
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.35
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.35
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.34
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.33
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.33
PRK07846	451	mycothione reductase; Reviewed	97.32
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.32
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.32
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.31
PTZ00188	506	adrenodoxin reductase; Provisional	97.31
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.3
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.3
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.29
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.29
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.28
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.26
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.24
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.21
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.19
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.17
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.16
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.15
PTZ00367	567	squalene epoxidase; Provisional	97.15
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.12
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.11
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.11
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.11
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.08
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.07
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.06
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.05
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.03
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.99
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.98
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.94
PRK07395	553	L-aspartate oxidase; Provisional	96.93
PRK08071	510	L-aspartate oxidase; Provisional	96.91
KOG2755	334	consensus Oxidoreductase [General function predict	96.87
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.86
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.85
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.83
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.82
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	96.81
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	96.81
PRK05320	257	rhodanese superfamily protein; Provisional	96.79
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.78
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	96.72
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.69
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.67
PRK11883	451	protoporphyrinogen oxidase; Reviewed	96.66
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.63
PLN02815	594	L-aspartate oxidase	96.62
PRK07512	513	L-aspartate oxidase; Provisional	96.62
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.61
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.6
PRK12839	572	hypothetical protein; Provisional	96.6
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.58
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.58
PRK07233	434	hypothetical protein; Provisional	96.54
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.52
PLN02268	435	probable polyamine oxidase	96.49
COG3349	485	Uncharacterized conserved protein [Function unknow	96.47
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.47
PRK09077	536	L-aspartate oxidase; Provisional	96.45
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.43
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.43
PRK07208	479	hypothetical protein; Provisional	96.38
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.34
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.32
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.32
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.31
KOG2852	380	consensus Possible oxidoreductase [General functio	96.26
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	96.12
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.12
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.09
PLN02576	496	protoporphyrinogen oxidase	96.09
PLN03000	881	amine oxidase	96.08
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.01
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	96.0
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.99
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	95.95
PRK12416	463	protoporphyrinogen oxidase; Provisional	95.93
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.87
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.84
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.83
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.82
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.79
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	95.78
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.75
PLN02529	738	lysine-specific histone demethylase 1	95.72
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	95.65
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.65
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	95.57
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	95.53
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.49
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.48
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.45
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	95.42
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.4
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.36
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.35
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	95.34
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	95.34
PLN02487	569	zeta-carotene desaturase	95.31
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.25
PLN02328	808	lysine-specific histone demethylase 1 homolog	95.21
PLN02612	567	phytoene desaturase	95.11
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.05
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	94.94
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.94
PLN02568	539	polyamine oxidase	94.92
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.88
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.86
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.8
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	94.79
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.79
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	94.78
PLN02676	487	polyamine oxidase	94.74
PLN02612	567	phytoene desaturase	94.71
PRK05257	494	malate:quinone oxidoreductase; Validated	94.71
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	94.7
PRK08275	554	putative oxidoreductase; Provisional	94.64
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.62
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	94.56
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.48
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.47
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.46
PRK04148	134	hypothetical protein; Provisional	94.46
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.27
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.25
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	94.14
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	94.13
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.01
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	93.88
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	93.88
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.87
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.87
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.85
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.72
PRK08071	510	L-aspartate oxidase; Provisional	93.72
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.69
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.67
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	93.66
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.65
PRK13339	497	malate:quinone oxidoreductase; Reviewed	93.64
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.57
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	93.56
PRK12842	574	putative succinate dehydrogenase; Reviewed	93.46
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	93.38
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	93.37
PRK09077	536	L-aspartate oxidase; Provisional	93.37
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	93.34
PRK07804	541	L-aspartate oxidase; Provisional	93.3
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.27
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	93.24
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	93.12
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.06
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.03
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	92.97
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.91
COG2907	447	Predicted NAD/FAD-binding protein [General functio	92.82
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	92.77
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	92.71
PLN02976	1713	amine oxidase	92.67
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	92.67
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	92.66
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	92.65
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	92.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.56
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	92.53
PLN02256	304	arogenate dehydrogenase	92.45
PRK08401	466	L-aspartate oxidase; Provisional	92.44
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	92.4
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.38
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.35
PRK09620	229	hypothetical protein; Provisional	92.18
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.1
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.05
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	92.04
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	91.88
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	91.79
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	91.73
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	91.72
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.71
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.66
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.66
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	91.54
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	91.52
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	91.49
PRK09496	453	trkA potassium transporter peripheral membrane com	91.46
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.45
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	91.44
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.43
PRK07512	513	L-aspartate oxidase; Provisional	91.42
PRK02106	560	choline dehydrogenase; Validated	91.31
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	91.17
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	91.14
PRK06175	433	L-aspartate oxidase; Provisional	91.12
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	91.12
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	91.1
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.09
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	91.02
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.99
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	90.98
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.92
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	90.83
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.82
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	90.8
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.8
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	90.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.67
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	90.62
PLN02815	594	L-aspartate oxidase	90.56
PRK06849	389	hypothetical protein; Provisional	90.53
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	90.51
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.46
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.44
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	90.38
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.34
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.21
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	90.2
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	90.15
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	90.14
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.07
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.05
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.03
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	90.03

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=4.5e-41  Score=333.39  Aligned_cols=304  Identities=20%  Similarity=0.235  Sum_probs=249.9

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++
T Consensus       114 ~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~  193 (444)
T PRK09564        114 RPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEI  193 (444)
T ss_pred             CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHH
Confidence            46666789988889999999999999998887656899999999999999999999999999999999988876589999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  163 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~  163 (358)
                      .+.+++.|++.||++++++++++++.  ++.+..+.+ ++.++++|.+++|+|++|++++++.. +.. ++|+|.||+++
T Consensus       194 ~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~  270 (444)
T PRK09564        194 TDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG  270 (444)
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc
Confidence            99999999999999999999999964  344444444 45579999999999999999887754 665 67889999999


Q ss_pred             cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEE
Q 018320          164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH  243 (358)
Q Consensus       164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  243 (358)
                      +|+.|+|||+|||+..+....+.+.+.+++..|.+||+++|+||+|.... .....+.....++++.++++|+++.++..
T Consensus       271 ~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~-~~~~~~~~~~~~~~~~~a~vG~t~~~a~~  349 (444)
T PRK09564        271 ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS-FKGTLGSACIKVLDLEAARTGLTEEEAKK  349 (444)
T ss_pred             ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC-CCCcccceEEEECCEEEEEecCCHHHHHH
Confidence            99999999999999987766666666788999999999999999986532 22334444556889999999998765422


Q ss_pred             Ec---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-H-HHHHHHHHHHHcCCCcccHHHHhhcCCccc
Q 018320          244 YG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-K-EEYEAIAKATRLQPVVEDLAELETQGLGFA  302 (358)
Q Consensus       244 ~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~ya  302 (358)
                      .|         ...        ..+|.|+..  ++++|||+|++|+. + +.++.++.||++++|++||.+++   +.|+
T Consensus       350 ~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~  426 (444)
T PRK09564        350 LGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMD---FCYA  426 (444)
T ss_pred             CCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcc---cccC
Confidence            11         111        123666554  68999999999985 5 44678899999999999999988   9999


Q ss_pred             CCcCCCCCCCCccc
Q 018320          303 LAVSQKPLPSTPVD  316 (358)
Q Consensus       303 p~~~~~~~~~~~~~  316 (358)
                      |+|+++.++.+..+
T Consensus       427 p~~~~~~~~~~~~~  440 (444)
T PRK09564        427 PPFARTWDALNVAG  440 (444)
T ss_pred             CCCCCCcCHHHHHH
Confidence            99999988765554

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=4.8e-41  Score=332.43  Aligned_cols=292  Identities=17%  Similarity=0.285  Sum_probs=240.4

Q ss_pred             CCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHH
Q 018320           15 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK   94 (358)
Q Consensus        15 ~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~   94 (358)
                      .+.++++++++++++..+++.+....+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~  200 (438)
T PRK13512        122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELD  200 (438)
T ss_pred             CCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHH
Confidence            44578999999999999998886656899999999999999999999999999999999998875 89999999999999


Q ss_pred             hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccccCCCCcEEE
Q 018320           95 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYA  172 (358)
Q Consensus        95 ~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~~t~~~~VyA  172 (358)
                      ++||++++++++++++.   .   .+.+.+|+++++|.|++++|++||+++++.. +.. ++|+|.||+++||+.|+|||
T Consensus       201 ~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA  274 (438)
T PRK13512        201 KREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYA  274 (438)
T ss_pred             hcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEE
Confidence            99999999999999963   1   3566788899999999999999999987654 555 56889999999999999999


Q ss_pred             EcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-------
Q 018320          173 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------  245 (358)
Q Consensus       173 iGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-------  245 (358)
                      +|||+.......+.+...+++..|.+||+.+|+||+|.......+..+..+..++++.++++|+++.++...+       
T Consensus       275 ~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~  354 (438)
T PRK13512        275 IGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVT  354 (438)
T ss_pred             eeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEe
Confidence            9999986544445555556777899999999999998542112245556667889999999999987554221       


Q ss_pred             c--------CCCCceEEEEe--eCCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCCCCCCC
Q 018320          246 N--------FSGTTFGAYWV--NKGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST  313 (358)
Q Consensus       246 ~--------~~~~~~~~~~~--~~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~  313 (358)
                      .        ....+|.|+..  ++++|||+|++|++ +. .++.++.||++++|++||.+++   +.|+|+|++..++.+
T Consensus       355 ~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~~~~~~~  431 (438)
T PRK13512        355 QGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAYAPPYSHPKDLIN  431 (438)
T ss_pred             cCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCccccHHH
Confidence            0        01123666554  58999999999986 44 4678899999999999999988   999999999887766


Q ss_pred             ccc
Q 018320          314 PVD  316 (358)
Q Consensus       314 ~~~  316 (358)
                      ..+
T Consensus       432 ~~~  434 (438)
T PRK13512        432 MIG  434 (438)
T ss_pred             HHH
Confidence            655

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=9.8e-41  Score=329.43  Aligned_cols=299  Identities=25%  Similarity=0.321  Sum_probs=247.9

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+.++++++++++++.++++.+....+++++|||||++|+|+|..|++.|.+||++++.++++.+.+++++
T Consensus       102 ~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~  181 (427)
T TIGR03385       102 SPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEM  181 (427)
T ss_pred             CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHH
Confidence            56777899988789999999999999998886556899999999999999999999999999999999888544589999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  163 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~  163 (358)
                      .+.+.+.|++.||++++++.+++++.  ++.+  +.+.+|+++++|.+++++|.+|++++++.. +.+ ++|+|.||+++
T Consensus       182 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~  257 (427)
T TIGR03385       182 NQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKF  257 (427)
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCc
Confidence            99999999999999999999999975  3332  456788899999999999999999988764 555 56899999999


Q ss_pred             cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCC-CCCCeEEEEecCceEEEeecccceEE
Q 018320          164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVV  242 (358)
Q Consensus       164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~  242 (358)
                      +|+.|+|||+|||+..+....+.+...+++..|.+||+++|+||+|..  ..+ ...+...+.++++.++++|+++.++.
T Consensus       258 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~--~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~  335 (427)
T TIGR03385       258 QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGND--IEFKGVLGTNITKFFDLTIASTGVTENEAK  335 (427)
T ss_pred             EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCCC--CCCCCcceeeEEEEcCeEEEEecCCHHHHH
Confidence            999999999999999877666666556788999999999999999864  233 33455667889999999999876432


Q ss_pred             EEc---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-HHH-HHHHHHHHHcCCCcccHHHHhhcCCcc
Q 018320          243 HYG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-KEE-YEAIAKATRLQPVVEDLAELETQGLGF  301 (358)
Q Consensus       243 ~~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y  301 (358)
                      ..|         ...        ..+|.++..  ++++|||+|++|++ +.+ +..++.||++++|++||.+++   +.|
T Consensus       336 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~  412 (427)
T TIGR03385       336 KLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE---LAY  412 (427)
T ss_pred             HCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcc---ccc
Confidence            111         111        122666655  57999999999988 555 678899999999999999999   999


Q ss_pred             cCCcCCCCCCCC
Q 018320          302 ALAVSQKPLPST  313 (358)
Q Consensus       302 ap~~~~~~~~~~  313 (358)
                      +|+|.+..++.+
T Consensus       413 ~p~~~~~~~~~~  424 (427)
T TIGR03385       413 APPYSRVWDPLN  424 (427)
T ss_pred             CCCCCCccchHH
Confidence            999998765443

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=8.4e-39  Score=312.68  Aligned_cols=278  Identities=27%  Similarity=0.357  Sum_probs=235.7

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   86 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~   86 (358)
                      |+.+++++.+.++++++++++|+.++++.+.  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++.
T Consensus       112 ~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~  189 (396)
T PRK09754        112 ARPLPLLDALGERCFTLRHAGDAARLREVLQ--PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQ  189 (396)
T ss_pred             CCCCCCCCcCCCCEEecCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHH
Confidence            4555667766789999999999999988775  57899999999999999999999999999999999998876789999


Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEeccccC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQS  165 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~t  165 (358)
                      +.+.+.++++||++++++.+++++.  ++. ..+.+.+|+++++|.|++++|.+||+.+++.. +.. +++|.||++|||
T Consensus       190 ~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~t  265 (396)
T PRK09754        190 RYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRT  265 (396)
T ss_pred             HHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCcc
Confidence            9999999999999999999999974  222 35778889999999999999999999887543 444 467999999999


Q ss_pred             CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce-EEEE
Q 018320          166 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE-VVHY  244 (358)
Q Consensus       166 ~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-~~~~  244 (358)
                      +.|+|||+|||+..+.+ +|...+.++|..|..||++||.||+|..  .++..+|++|+++|+++++++|....+ ....
T Consensus       266 s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~  342 (396)
T PRK09754        266 CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLP--LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCR  342 (396)
T ss_pred             CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCC--CCCCCCCceEEEeCCccEEEeeCCCCCEEEEe
Confidence            99999999999988776 7777788999999999999999999876  467889999999999999999965543 3455


Q ss_pred             ccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHh
Q 018320          245 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       245 g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      ++.++..|..++.++|+|+|+.++|. ..+...+..+|+.+.++ +...|.
T Consensus       343 ~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~  391 (396)
T PRK09754        343 GNPETQKAIWFNLQNGVLIGAVTLNQ-GREIRPIRKWIQSGKTF-DAKLLI  391 (396)
T ss_pred             cCCCCceEEEEEeeCCEEEEEEEECC-HHHHHHHHHHHHCCCCC-CHHHhc
Confidence            65555456677778999999999995 66777778889988877 444444

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.1e-39  Score=319.65  Aligned_cols=276  Identities=25%  Similarity=0.317  Sum_probs=217.4

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+...+++-++   +..+.     .-|++++|||||++|+|+|..++++|.+|||+++.++++|. +|+++
T Consensus       146 ~p~~~~~~~~~~~~~~~s~~---~l~~~-----~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei  216 (454)
T COG1249         146 RPRIPPGPGIDGARILDSSD---ALFLL-----ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEI  216 (454)
T ss_pred             CCcCCCCCCCCCCeEEechh---hcccc-----cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHH
Confidence            45555566665555553322   21111     14899999999999999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChhh---hhccccc-ccCcEEE
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSL---FEGQLTL-EKGGIKV  159 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~l---~~~~~~~-~~g~i~v  159 (358)
                      ++.+.+.|++.|+++++++.+++++.++++  ..+.+++|+  ++++|.+++|+|++||++-   .+.++++ ++|+|.|
T Consensus       217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~V  294 (454)
T COG1249         217 SKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKV  294 (454)
T ss_pred             HHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEe
Confidence            999999999999999999999999874444  467777765  7999999999999999983   2344777 5689999


Q ss_pred             eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEEecCceEEEeeccc
Q 018320          160 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNV  238 (358)
Q Consensus       160 d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  238 (358)
                      |++++|++|+|||+|||+..+.          +.+.|..||++|++||++ .....++..+|+.++  .+..++++|+++
T Consensus       295 D~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~if--t~Peia~VGlte  362 (454)
T COG1249         295 DDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVF--TDPEIASVGLTE  362 (454)
T ss_pred             CCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEE--CCCcceeeeCCH
Confidence            9888889999999999988764          467899999999999997 333346788998664  566789999998


Q ss_pred             ceEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhhc
Q 018320          239 GEVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQ  297 (358)
Q Consensus       239 ~~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~  297 (358)
                      .++...+        .          .+..+|.|+..  ++++|||+|++|+++.++ ..++.||++++|.+|+....  
T Consensus       363 ~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i--  440 (454)
T COG1249         363 EEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTI--  440 (454)
T ss_pred             HHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCC--
Confidence            7653222        0          11234766655  579999999999998876 56799999999999887655  


Q ss_pred             CCcccCCcCCC
Q 018320          298 GLGFALAVSQK  308 (358)
Q Consensus       298 ~~~yap~~~~~  308 (358)
                        ..+|++++.
T Consensus       441 --~~HPT~sE~  449 (454)
T COG1249         441 --HAHPTLSEA  449 (454)
T ss_pred             --CCCCChHHH
Confidence              556666554

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=4.1e-39  Score=306.73  Aligned_cols=294  Identities=50%  Similarity=0.874  Sum_probs=268.4

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      .|+.+++||.+.+|++++|+++|++.+...+.  ..++|+++|+|++|+|+|..|...+.+||+|++.+.++++.+.+++
T Consensus       180 ~~~~l~~pG~~~~nv~~ireieda~~l~~~~~--~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i  257 (478)
T KOG1336|consen  180 SAKTLDIPGVELKNVFYLREIEDANRLVAAIQ--LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSI  257 (478)
T ss_pred             ccccCCCCCccccceeeeccHHHHHHHHHHhc--cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHH
Confidence            56778899999999999999999999988886  4788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccc-cccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~-~~~g~i~vd~~~~  164 (358)
                      ++.++++++++||++++++.+.+++.+.+|++..|.+.||+++++|.|++.+|.+|++.+++.... .+.|+|.||++||
T Consensus       258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~  337 (478)
T KOG1336|consen  258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQ  337 (478)
T ss_pred             HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEeehhcee
Confidence            999999999999999999999999988889999999999999999999999999999999885433 4789999999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY  244 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  244 (358)
                      |++|+|||+|||+..+.+.++..+++.|++.|..+|+.+...+...... .+.++|+|++.+|++.|.+.|.+.++.+..
T Consensus       338 t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~-~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~  416 (478)
T KOG1336|consen  338 TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQD-AYDYLPYFYTRFFSLSWRFAGDGVGDVVLF  416 (478)
T ss_pred             eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcc-cccccchHHHHHhhhhccccCcCccceeee
Confidence            9999999999999999998888778999999999999887777655432 377999999999999999999999999999


Q ss_pred             ccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320          245 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL  303 (358)
Q Consensus       245 g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  303 (358)
                      |+.+-..|+.+|.+ +..+++.+-+..+++.+.++..++.+..+..+..+...+..|+.
T Consensus       417 G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~~~  474 (478)
T KOG1336|consen  417 GDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSFWL  474 (478)
T ss_pred             cccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhhHH
Confidence            98876679999999 99999999998888899999999999999988888877766653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=1e-36  Score=320.10  Aligned_cols=310  Identities=19%  Similarity=0.227  Sum_probs=240.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.+++|++|+++|+.++++.+.  .+++++|||||++|+|+|..|+++|.+||++++.+++++..+|+++
T Consensus       112 ~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~--~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~  189 (847)
T PRK14989        112 YPWIPPIKGSETQDCFVYRTIEDLNAIEACAR--RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMG  189 (847)
T ss_pred             CcCCCCCCCCCCCCeEEECCHHHHHHHHHHHh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHH
Confidence            45566799998899999999999999988775  5789999999999999999999999999999999999987799999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  163 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~  163 (358)
                      ++.+.+.|+++||++++++.+++|..++++....+.+.||+++++|.||+++|++||+++++.. +.. ++|+|.||++|
T Consensus       190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l  269 (847)
T PRK14989        190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSC  269 (847)
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCC
Confidence            9999999999999999999999997533344556888999999999999999999999987654 666 67899999999


Q ss_pred             cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce---
Q 018320          164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE---  240 (358)
Q Consensus       164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~---  240 (358)
                      +|++|+|||+|||+......+      .++..|.+||++||+||+|.... ..........+++++.++++|...+.   
T Consensus       270 ~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~a~vaa~~i~g~~~~-~~g~~~~~~lk~~G~~v~s~G~~~~~~~~  342 (847)
T PRK14989        270 QTSDPDIYAIGECASWNNRVF------GLVAPGYKMAQVAVDHLLGSENA-FEGADLSAKLKLLGVDVGGIGDAHGRTPG  342 (847)
T ss_pred             cCCCCCEEEeecceeEcCccc------ccHHHHHHHHHHHHHHhcCCCcC-CCCcccceEEEECCcceEecccccCCCCC
Confidence            999999999999999865433      46789999999999999987632 22223334678899999999954332   


Q ss_pred             --EEEEccCCCCceEEEEe--eCCeEEEEEEeCCCHHHHHHHHHHHHcCCCccc-HHHHhhcCCc--ccCCcCCCCCCCC
Q 018320          241 --VVHYGNFSGTTFGAYWV--NKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED-LAELETQGLG--FALAVSQKPLPST  313 (358)
Q Consensus       241 --~~~~g~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~d-l~~l~~~~~~--yap~~~~~~~~~~  313 (358)
                        .....+.....|.++.+  ++++|+|++++|+.. ....+...+..++++.+ ...|..+...  -+|..+...+|..
T Consensus       343 ~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~-~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~d~  421 (847)
T PRK14989        343 ARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTS-DYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDKLPDS  421 (847)
T ss_pred             ceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHH-HHHHHHHHHHcCCCCccchhheecCCCCCCCCCccccccCCCC
Confidence              23333333345888766  467999999999644 34444455567777755 3333311110  1244545578888


Q ss_pred             cccccccccccc
Q 018320          314 PVDGKTVPGLVL  325 (358)
Q Consensus       314 ~~~~~~~n~~~~  325 (358)
                      ..+|.|.|+-.+
T Consensus       422 a~iC~C~~Vt~~  433 (847)
T PRK14989        422 AQICSCFDVTKG  433 (847)
T ss_pred             CEEEEeecccHH
Confidence            899885555444

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=4.4e-37  Score=304.98  Aligned_cols=276  Identities=20%  Similarity=0.269  Sum_probs=216.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+...+   .+.+++..+..     .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       139 ~p~~p~i~g~~~~~~---~~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~  209 (451)
T PRK07846        139 RPVIPPVIADSGVRY---HTSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDI  209 (451)
T ss_pred             CCCCCCCCCcCCccE---EchHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            466667888654433   35555554432     3789999999999999999999999999999999999876 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.+ +.||++++++++++++.+ ++. ..+.+.+|+++++|.|++++|++|+++++.   ..+++ ++|+|.||+
T Consensus       210 ~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~  286 (451)
T PRK07846        210 SERFTELA-SKRWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE  286 (451)
T ss_pred             HHHHHHHH-hcCeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC
Confidence            98887655 568999999999999863 333 346677888999999999999999999753   23665 678899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG  239 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~  239 (358)
                      ++||+.|+|||+|||+..+          ++...|.+||+++++||++...  ..++..+|+.++  .++.++++|+++.
T Consensus       287 ~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if--~~p~ia~vGlte~  354 (451)
T PRK07846        287 YQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVF--THPQIASVGLTEN  354 (451)
T ss_pred             CcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEE--CCCCcEeEeCCHH
Confidence            9999999999999999754          3566899999999999997532  245677887653  5788999999987


Q ss_pred             eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320          240 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  298 (358)
Q Consensus       240 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  298 (358)
                      ++...|           +       .+..+|.|+..  ++++|||+|++|+++.+ ++.++.||++++|++||.+..   
T Consensus       355 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---  431 (451)
T PRK07846        355 EARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQ---  431 (451)
T ss_pred             HHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---
Confidence            543222           0       11123666554  58999999999988655 678899999999999998766   


Q ss_pred             CcccCCcCCC
Q 018320          299 LGFALAVSQK  308 (358)
Q Consensus       299 ~~yap~~~~~  308 (358)
                      +.++|.+++.
T Consensus       432 ~~~hPt~~e~  441 (451)
T PRK07846        432 YWIHPALPEV  441 (451)
T ss_pred             CccCCcHHHH
Confidence            5678888764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=8e-37  Score=304.42  Aligned_cols=275  Identities=16%  Similarity=0.225  Sum_probs=214.4

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   86 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~   86 (358)
                      |..+++++.+.+++++      ++.+.+...  .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++.
T Consensus       149 p~~p~~~~~~~~~v~~------~~~~~~~~~--~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~  219 (461)
T PRK05249        149 PYRPPDVDFDHPRIYD------SDSILSLDH--LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEIS  219 (461)
T ss_pred             CCCCCCCCCCCCeEEc------HHHhhchhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHH
Confidence            3334455555566663      223322222  4799999999999999999999999999999999999986 899999


Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEecc
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGR  162 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~~  162 (358)
                      +.+.+.|+++||++++++.+++++.++++  ..+++.+|+++++|.|++|+|++||++++  + ..+.+ ++|+|.||++
T Consensus       220 ~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~  297 (461)
T PRK05249        220 DALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN  297 (461)
T ss_pred             HHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCC
Confidence            99999999999999999999999864333  34566788899999999999999999853  2 23555 5788999999


Q ss_pred             ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018320          163 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  242 (358)
Q Consensus       163 ~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  242 (358)
                      +||+.|+|||+|||+..+          .++..|..||+.||.+|+|......+..+|+.++..  ..++++|+++.++.
T Consensus       298 ~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~--p~ia~vG~te~~a~  365 (461)
T PRK05249        298 YQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTI--PEISSVGKTEQELT  365 (461)
T ss_pred             cccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECC--CcceEecCCHHHHH
Confidence            999999999999998654          356789999999999999865445667788876544  47899999886432


Q ss_pred             EEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcc
Q 018320          243 HYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGF  301 (358)
Q Consensus       243 ~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y  301 (358)
                      ..|           ..       +..+|.++..  ++++|||+|++|+++.+ ++.++.||++++|++||.++.   +.|
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~  442 (461)
T PRK05249        366 AAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTT---FNY  442 (461)
T ss_pred             HcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---cCC
Confidence            111           10       1124666554  58999999999988665 577899999999999999887   444


Q ss_pred             cCCcCCC
Q 018320          302 ALAVSQK  308 (358)
Q Consensus       302 ap~~~~~  308 (358)
                       |.+++.
T Consensus       443 -Pt~~e~  448 (461)
T PRK05249        443 -PTMAEA  448 (461)
T ss_pred             -CCHHHH
Confidence             766553

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=1.9e-35  Score=310.29  Aligned_cols=308  Identities=19%  Similarity=0.240  Sum_probs=243.9

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.+++|++++++|+.++++.+.  .+++++|||||++|+|+|..|+++|.+||++++.++++++.+|+++
T Consensus       107 ~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~  184 (785)
T TIGR02374       107 YPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTA  184 (785)
T ss_pred             CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHH
Confidence            46667799999899999999999999988775  5789999999999999999999999999999999999987799999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      ...+.+.|+++||++++++.++++..  ++....+.+.||+++++|+||+++|.+|++++++.. +... ++|.||++||
T Consensus       185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~  261 (785)
T TIGR02374       185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQ  261 (785)
T ss_pred             HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcc
Confidence            99999999999999999999999974  445567888999999999999999999999988654 5544 7899999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc----e
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG----E  240 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~----~  240 (358)
                      |++|+|||+|||+..+...+      .++.+|.+||+.+|.||+|...............++++++++++|....    +
T Consensus       262 Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~  335 (785)
T TIGR02374       262 TSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETERTT  335 (785)
T ss_pred             cCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCCCcE
Confidence            99999999999998765433      3678899999999999998762223334556677899999999996542    1


Q ss_pred             EEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCc--ccCCcCCCCCCCCccccc
Q 018320          241 VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLG--FALAVSQKPLPSTPVDGK  318 (358)
Q Consensus       241 ~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~--yap~~~~~~~~~~~~~~~  318 (358)
                      .....+.....|.++++++++|+|++++|. ......+..+++.+..+.+...|..+.-.  -.|..+.+..|....+|.
T Consensus       336 ~~~~~d~~~~~y~kl~~~~~rLlGavlvgd-~~~~~~L~~li~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~d~~~vC~  414 (785)
T TIGR02374       336 SIKIYDEQKGIYKKLVLSDDKLLGAVLFGD-TSDYGRLLDMVLKQADISEDPAIIKPQISGPEAGGPGVEAMPDSEQICS  414 (785)
T ss_pred             EEEEEcCCCCEEEEEEEECCEEEEEEEECC-HHHHHHHHHHHHcCCCCCcChhhhcCCCCCCCCCCcccccCCCCCEEee
Confidence            233334444458888889999999999995 45677788889988877664454411100  011122234566788887


Q ss_pred             ccccccc
Q 018320          319 TVPGLVL  325 (358)
Q Consensus       319 ~~n~~~~  325 (358)
                      +.|+-.+
T Consensus       415 C~~Vt~~  421 (785)
T TIGR02374       415 CNTVTKG  421 (785)
T ss_pred             CCCCcHH
Confidence            4444443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=2.9e-36  Score=300.92  Aligned_cols=275  Identities=17%  Similarity=0.254  Sum_probs=213.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|..+++||.+  .++   +.+++..+.     ..+++++|||||++|+|+|..|..+   |.+|||+++.+++++. +|
T Consensus       162 ~p~~p~i~G~~--~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d  230 (486)
T TIGR01423       162 WPQMLGIPGIE--HCI---SSNEAFYLD-----EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FD  230 (486)
T ss_pred             CCCCCCCCChh--hee---chhhhhccc-----cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cC
Confidence            46666788865  233   444443322     2479999999999999999877655   9999999999999986 89


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEE
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIK  158 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~  158 (358)
                      +++++.+.+.|+++||++++++.+++++.++++. ..+.+.+|+++++|.|++++|++|+++++.   ..+.+ ++|.|.
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~  309 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQ  309 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEe
Confidence            9999999999999999999999999998643432 456667888999999999999999998643   33555 678899


Q ss_pred             EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN  237 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~  237 (358)
                      ||+++||+.|+|||+|||+..+          .++..|++||+++++||++... ...+..+|+.++..  +.++++|++
T Consensus       310 Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~--peia~vGlt  377 (486)
T TIGR01423       310 VDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSI--PPIGTCGLV  377 (486)
T ss_pred             cCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCC--CceEEeeCC
Confidence            9999999999999999998754          3566799999999999998542 23555678765543  468999999


Q ss_pred             cceEEEEcc-----------C-----C---CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320          238 VGEVVHYGN-----------F-----S---GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       238 ~~~~~~~g~-----------~-----~---~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      +.++...++           .     .   ..+|.++..  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus       378 e~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~  457 (486)
T TIGR01423       378 EEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTI  457 (486)
T ss_pred             HHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence            875432211           0     0   124666555  58999999999988655 678899999999999999876


Q ss_pred             hcCCcccCCcCCC
Q 018320          296 TQGLGFALAVSQK  308 (358)
Q Consensus       296 ~~~~~yap~~~~~  308 (358)
                          ..+|.+++.
T Consensus       458 ----~~hPt~sE~  466 (486)
T TIGR01423       458 ----GVHPTSAEE  466 (486)
T ss_pred             ----cCCCCcHHH
Confidence                456777665

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=2.3e-36  Score=301.15  Aligned_cols=278  Identities=21%  Similarity=0.256  Sum_probs=213.5

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+..++++.+++.+   +.     ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       144 ~p~~p~i~G~~~~~~~~~~~~~~---~~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~  214 (463)
T PRK06370        144 RAAIPPIPGLDEVGYLTNETIFS---LD-----ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDV  214 (463)
T ss_pred             CCCCCCCCCCCcCceEcchHhhC---cc-----ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHH
Confidence            46667789987666765433221   11     14799999999999999999999999999999999999987 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CCcEEecCeEEEeeCCCCChh-h-hhc-cccc-ccCcEEEe
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIKVT  160 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p~~~-l-~~~-~~~~-~~g~i~vd  160 (358)
                      .+.+.+.|+++||++++++++.+++.++++....+... ++.++++|.||+|+|++|+++ + ++. .+.+ ++|+|.||
T Consensus       215 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd  294 (463)
T PRK06370        215 AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD  294 (463)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC
Confidence            99999999999999999999999986433322223322 345799999999999999998 3 232 3555 56889999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVG  239 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~  239 (358)
                      ++|||+.|+|||+|||+..+          .+...|..||++||+||++. .....+..+|+.  .+++..++++|+++.
T Consensus       295 ~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~~~~p~ia~vG~te~  362 (463)
T PRK06370        295 DQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--TYTDPPLARVGMTEA  362 (463)
T ss_pred             cCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--EEcCCCcEeeeCCHH
Confidence            99999999999999998754          34668999999999999975 322344456654  467889999999886


Q ss_pred             eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320          240 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  298 (358)
Q Consensus       240 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  298 (358)
                      ++...|           +       ....+|.|+..  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.   
T Consensus       363 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---  439 (463)
T PRK06370        363 EARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAI---  439 (463)
T ss_pred             HHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---
Confidence            543221           1       11134666655  58999999999988655 578899999999999998866   


Q ss_pred             CcccCCcCCC
Q 018320          299 LGFALAVSQK  308 (358)
Q Consensus       299 ~~yap~~~~~  308 (358)
                       ..+|.+++.
T Consensus       440 -~~hPt~~e~  448 (463)
T PRK06370        440 -HIHPTVSEL  448 (463)
T ss_pred             -ccCCChHHH
Confidence             344656554

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=3.1e-36  Score=300.29  Aligned_cols=276  Identities=20%  Similarity=0.243  Sum_probs=215.5

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++++.+.+++++.+++.+...        .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       150 ~p~~~p~~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~  220 (466)
T PRK07845        150 SPRILPTAEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADA  220 (466)
T ss_pred             CCCCCCCCCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHH
Confidence            34444455555566776655433221        3689999999999999999999999999999999999997 79999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~  161 (358)
                      ...+.+.|+++||++++++++++++.++++  ..+.+.+|+++++|.|++++|++||++++  + ..+.+ ++|+|.||+
T Consensus       221 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~  298 (466)
T PRK07845        221 AEVLEEVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDR  298 (466)
T ss_pred             HHHHHHHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECC
Confidence            999999999999999999999999763333  34667788999999999999999999853  3 33665 568899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccce
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGE  240 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~  240 (358)
                      ++||+.|+|||+|||+..+          +++..|..||+.|+.|+++... ...+..+|+.+  +.++.++++|+++.+
T Consensus       299 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~v--f~~p~~a~vGlte~~  366 (466)
T PRK07845        299 VSRTSVPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVASNV--FTRPEIATVGVSQAA  366 (466)
T ss_pred             CcccCCCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE--eCCCcceeecCCHHH
Confidence            9999999999999999753          4678899999999999998642 23445566533  236889999998754


Q ss_pred             EEEEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCC
Q 018320          241 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL  299 (358)
Q Consensus       241 ~~~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~  299 (358)
                      +...+           +.       ...+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++    +
T Consensus       367 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~----~  442 (466)
T PRK07845        367 IDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQT----F  442 (466)
T ss_pred             HHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC----c
Confidence            32111           10       1123666555  58999999999988665 57889999999999999874    4


Q ss_pred             cccCCcCCC
Q 018320          300 GFALAVSQK  308 (358)
Q Consensus       300 ~yap~~~~~  308 (358)
                      .++|++++.
T Consensus       443 ~~hPt~~e~  451 (466)
T PRK07845        443 TVYPSLSGS  451 (466)
T ss_pred             CCCCCHHHH
Confidence            688888764

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=3.4e-36  Score=298.77  Aligned_cols=262  Identities=23%  Similarity=0.322  Sum_probs=210.6

Q ss_pred             ecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEc
Q 018320           23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  102 (358)
Q Consensus        23 l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~  102 (358)
                      +.+.+++.++.+     .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.+ +.||++++
T Consensus       156 ~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~  228 (452)
T TIGR03452       156 YHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRL  228 (452)
T ss_pred             EEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEe
Confidence            456777776643     3789999999999999999999999999999999998886 8999998887755 46899999


Q ss_pred             CCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEeccccCCCCcEEEEccccc
Q 018320          103 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAA  178 (358)
Q Consensus       103 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~  178 (358)
                      ++++++++.++++  ..+.+.+|+++++|.|++++|++|+++++.   .++++ ++|+|.||+++||+.|+|||+|||+.
T Consensus       229 ~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~  306 (452)
T TIGR03452       229 GRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSS  306 (452)
T ss_pred             CCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccC
Confidence            9999999864333  346667788999999999999999998753   23566 57889999999999999999999997


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccceEEEEc--------c--
Q 018320          179 FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N--  246 (358)
Q Consensus       179 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g--------~--  246 (358)
                      .+          ++...|.+||+++|+||++...  ...+..+|+.+  ++++.++++|+++.++...|        .  
T Consensus       307 ~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i--~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~  374 (452)
T TIGR03452       307 PY----------QLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAV--FTHPQIATVGLTEQEAREAGHDITVKIQNYG  374 (452)
T ss_pred             cc----------cChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEE--ECCCCeeeeeCCHHHHHhcCCCeEEEEecCC
Confidence            54          3566799999999999998642  34566788764  47889999999987553221        0  


Q ss_pred             --------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          247 --------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       247 --------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                              .+..+|.|+..  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.   +.++|.+++.
T Consensus       375 ~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~hPt~~e~  444 (452)
T TIGR03452       375 DVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQ---YWIHPALPEV  444 (452)
T ss_pred             chhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---cccCCchHHH
Confidence                    11233666555  58999999999988665 578899999999999998866   5678888764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=5.4e-36  Score=297.23  Aligned_cols=251  Identities=20%  Similarity=0.259  Sum_probs=202.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|++.|.+||++++.+++++. +|+++.+.+.+.|+++||++++++.+++++.++++. ..
T Consensus       165 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~  242 (450)
T TIGR01421       165 LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LV  242 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EE
Confidence            3789999999999999999999999999999999999986 899999999999999999999999999998643332 34


Q ss_pred             EEcCCC-cEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHH
Q 018320          120 VNLRDG-NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  194 (358)
Q Consensus       120 v~~~~g-~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~  194 (358)
                      +.+++| +++++|.|++++|++||++++  + ..+.+ ++|+|.||+++||+.|+|||+|||+..+          ..+.
T Consensus       243 v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~----------~~~~  312 (450)
T TIGR01421       243 IHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV----------ELTP  312 (450)
T ss_pred             EEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc----------ccHH
Confidence            667777 579999999999999999853  3 23555 5788999999999999999999999754          3467


Q ss_pred             HHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccceEEEE-cc-------------------CCCCce
Q 018320          195 SARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-GN-------------------FSGTTF  252 (358)
Q Consensus       195 ~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g~-------------------~~~~~~  252 (358)
                      .|.+||+.+|+||++...  ...+..+|+  ..+++..++++|+++.++... +.                   ....+|
T Consensus       313 ~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  390 (450)
T TIGR01421       313 VAIAAGRKLSERLFNGKTDDKLDYNNVPT--VVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCR  390 (450)
T ss_pred             HHHHHHHHHHHHHhcCCCCCccCcccCCe--EEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceE
Confidence            899999999999997532  134556776  445677899999998654322 10                   011236


Q ss_pred             EEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          253 GAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       253 ~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      .++..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.    ..+|.+++.
T Consensus       391 ~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  445 (450)
T TIGR01421       391 MKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTV----AIHPTSSEE  445 (450)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc----cCCCChHHH
Confidence            55554  58999999999988665 578899999999999998765    456777654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=4.8e-36  Score=302.71  Aligned_cols=284  Identities=18%  Similarity=0.220  Sum_probs=216.3

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+  .++   +.++...+    .  .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       213 ~P~~P~IpG~~--~v~---ts~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i  280 (561)
T PTZ00058        213 KPIFPDVKGKE--FTI---SSDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETI  280 (561)
T ss_pred             CCCCCCCCCce--eEE---EHHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHH
Confidence            45666788864  343   23333222    2  3799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEEEeeCCCCChhhhhcc---cccccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~~l~~~~---~~~~~g~i~vd~  161 (358)
                      .+.+.+.|+++||++++++.+.+++.++++.+. +.+.+ ++++++|.|++++|++|+++++...   +..++|+|.||+
T Consensus       281 ~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe  359 (561)
T PTZ00058        281 INELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDD  359 (561)
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECc
Confidence            999999999999999999999999864333332 33334 4579999999999999999876422   233678899999


Q ss_pred             cccCCCCcEEEEccccccccc-----------------------ccCccc-ccccHHHHHHHHHHHHHHHcCCCC-CCCC
Q 018320          162 RLQSSNSSVYAVGDVAAFPLK-----------------------LLGETR-RLEHVDSARKSAKHAVAAIMEPDK-TDKF  216 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~aa~~i~g~~~-~~~~  216 (358)
                      +|||+.|+|||+|||+..+..                       .++++. ..+++..|.+||+++|+||+|... ..++
T Consensus       360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~  439 (561)
T PTZ00058        360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNY  439 (561)
T ss_pred             CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCC
Confidence            999999999999999984321                       334443 367889999999999999998632 2345


Q ss_pred             CCCCeEEEEecCceEEEeecccceEEEE-c---------cC--------------CCCceEEEEe--eCCeEEEEEEeCC
Q 018320          217 DYLPFFYSRVFTLSWQFYGDNVGEVVHY-G---------NF--------------SGTTFGAYWV--NKGRLVGSFLEGG  270 (358)
Q Consensus       217 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g---------~~--------------~~~~~~~~~~--~~g~ilGa~~vg~  270 (358)
                      ..+|+.++  .++.++++|+++.++... |         ..              ...++.+++.  ++|+|||+|++|+
T Consensus       440 ~~ip~~vf--t~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~  517 (561)
T PTZ00058        440 KLIPSVIF--SHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGL  517 (561)
T ss_pred             CCCCeEEe--CCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECC
Confidence            66787533  446899999988654322 1         00              0123666554  5899999999998


Q ss_pred             CHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          271 TKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       271 ~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++.+ ++.++.||++++|++||.++.    ..+|.+++.
T Consensus       518 ~a~elI~~~a~ai~~~~t~~dl~~~~----~~hPt~~e~  552 (561)
T PTZ00058        518 NADEILQGFAVALKMNATKADFDETI----PIHPTAAEE  552 (561)
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHhhcc----cCCCChHHH
Confidence            8665 578899999999999998865    456776654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.7e-36  Score=299.98  Aligned_cols=249  Identities=18%  Similarity=0.230  Sum_probs=202.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.|+++ |++++++.+++++.++++  ..
T Consensus       173 ~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~  248 (471)
T PRK06467        173 VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IY  248 (471)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EE
Confidence            4789999999999999999999999999999999999997 8999999999999988 999999999999864333  23


Q ss_pred             EEcCC--C--cEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc
Q 018320          120 VNLRD--G--NRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  191 (358)
Q Consensus       120 v~~~~--g--~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~  191 (358)
                      +++.+  +  +++++|.|++++|++||++++.   ..+.+ ++|+|.||++|||+.|+|||+|||+..+          .
T Consensus       249 v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~----------~  318 (471)
T PRK06467        249 VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP----------M  318 (471)
T ss_pred             EEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc----------c
Confidence            44433  2  4699999999999999998542   23555 5788999999999999999999998643          3


Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceE
Q 018320          192 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFG  253 (358)
Q Consensus       192 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~  253 (358)
                      ++..|.+||+.||.+|++.....++..+|+.+  ++++.++++|+++.++...|           .       ....+|.
T Consensus       319 la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~--~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  396 (471)
T PRK06467        319 LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIA--YTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMT  396 (471)
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEE
Confidence            57789999999999999865445566778754  78999999999887543222           0       0112366


Q ss_pred             EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          254 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       254 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++.+  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.    .|+|++++.
T Consensus       397 kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~----~~hPt~~e~  450 (471)
T PRK06467        397 KLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTI----HAHPTLHES  450 (471)
T ss_pred             EEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc----cCCCChHHH
Confidence            6555  57999999999988665 578899999999999998764    778888864

>PLN02507 glutathione reductase

Probab=100.00  E-value=9.7e-36  Score=298.52  Aligned_cols=274  Identities=19%  Similarity=0.271  Sum_probs=212.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.  .   .+.+++..+..     .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus       178 ~p~~p~ipG~~~--~---~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~  246 (499)
T PLN02507        178 RAQRPNIPGKEL--A---ITSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM  246 (499)
T ss_pred             CCCCCCCCCccc--e---echHHhhhhhh-----cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence            345556787642  2   24455555432     3689999999999999999999999999999999998886 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.|+++||+++++++|++++.++++  ..+.+.+|+++++|.|++++|++|+++++  +. .+.+ ++|+|.||+
T Consensus       247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~  324 (499)
T PLN02507        247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE  324 (499)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence            999999999999999999999999863333  34667788899999999999999999863  33 3555 568899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccce
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE  240 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~  240 (358)
                      ++||+.|+|||+|||+...          .++..|.+||+++++||++.... ..+..+|+.++  ....++++|+++.+
T Consensus       325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if--~~p~ia~vGlte~e  392 (499)
T PLN02507        325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVF--CIPPLSVVGLSEEE  392 (499)
T ss_pred             CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEE--CCCccEEEeCCHHH
Confidence            9999999999999999643          35678999999999999975431 23445675433  23478999998765


Q ss_pred             EEEE-c--------cC----------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320          241 VVHY-G--------NF----------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  298 (358)
Q Consensus       241 ~~~~-g--------~~----------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  298 (358)
                      +... +        ..          ...+|.|+.+  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.   
T Consensus       393 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~---  469 (499)
T PLN02507        393 AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTV---  469 (499)
T ss_pred             HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcC---
Confidence            4322 1        00          1123666554  58999999999988654 678899999999999998754   


Q ss_pred             CcccCCcCCC
Q 018320          299 LGFALAVSQK  308 (358)
Q Consensus       299 ~~yap~~~~~  308 (358)
                       ..+|.+++.
T Consensus       470 -~~hPt~~E~  478 (499)
T PLN02507        470 -GIHPSAAEE  478 (499)
T ss_pred             -cCCCChHHH
Confidence             567777765

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=5.2e-36  Score=298.72  Aligned_cols=267  Identities=24%  Similarity=0.277  Sum_probs=208.5

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+..++++.   +++..+.     ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       139 ~p~~p~i~G~~~~~~~~~---~~~~~~~-----~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~  209 (463)
T TIGR02053       139 RPAIPPIPGLKEAGYLTS---EEALALD-----RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEI  209 (463)
T ss_pred             CCCCCCCCCcccCceECc---hhhhCcc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHH
Confidence            466667888876665543   2332221     13689999999999999999999999999999999999987 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCcEEecCeEEEeeCCCCChh-h-hhc-cccc-ccCcEE
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIK  158 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~-l-~~~-~~~~-~~g~i~  158 (358)
                      ...+++.|++.||+++++++|++++.++++  ..+.+.   +++++++|.|++|+|++|+++ + ++. .+.. ++|+|.
T Consensus       210 ~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~  287 (463)
T TIGR02053       210 SAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL  287 (463)
T ss_pred             HHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEe
Confidence            999999999999999999999999863333  233332   236799999999999999998 3 332 3555 578899


Q ss_pred             EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecc
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDN  237 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~  237 (358)
                      ||++|||+.|+|||+|||+..+          .++..|..||+.||.||++. ....++..+|.  ..++++.++++|++
T Consensus       288 vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlt  355 (463)
T TIGR02053       288 VDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLT  355 (463)
T ss_pred             ECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCC
Confidence            9999999999999999999753          35778999999999999986 43334455674  45788999999998


Q ss_pred             cceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320          238 VGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       238 ~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      +.++...|           .       .+..+|.++..  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus       356 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~  434 (463)
T TIGR02053       356 EAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTL  434 (463)
T ss_pred             HHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence            86542211           0       11234666655  58999999999988665 578899999999999998765

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=9.1e-36  Score=295.51  Aligned_cols=274  Identities=20%  Similarity=0.264  Sum_probs=213.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.  .+   +.+++..+.     ..+++++|||+|++|+|+|..|++.|.+||++++.+.+++. +++++
T Consensus       141 ~p~~p~i~G~~~--~~---~~~~~~~l~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~  209 (446)
T TIGR01424       141 RPQKPNLPGHEL--GI---TSNEAFHLP-----TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDM  209 (446)
T ss_pred             cCCCCCCCCccc--ee---chHHhhccc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHH
Confidence            455566888642  22   333443332     14789999999999999999999999999999999998886 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.|+++||++++++++++++.++++  ..+.+.+|+++++|.|++|+|++|+++.+  + ..+++ ++|+|.||+
T Consensus       210 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~  287 (446)
T TIGR01424       210 RALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDE  287 (446)
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCC
Confidence            999999999999999999999999864333  34666788899999999999999999853  2 23555 568899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccce
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE  240 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  240 (358)
                      ++||+.|+|||+|||+..+          +++..|.+||+.|++||++.. ...++..+|+.++.  .+.++++|+++.+
T Consensus       288 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~--~p~ia~vG~te~~  355 (446)
T TIGR01424       288 YSRTSIPSIYAVGDVTDRI----------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFS--QPPLGTVGLTEEE  355 (446)
T ss_pred             CCccCCCCEEEeeccCCCc----------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeC--CchhEEEECCHHH
Confidence            9999999999999998643          457789999999999999854 22455678876543  3478999998765


Q ss_pred             EEEEc------------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320          241 VVHYG------------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  298 (358)
Q Consensus       241 ~~~~g------------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  298 (358)
                      +...+            .       ....+|.|+..  ++++|||+|++|+++.+ ++.++.||++++|++||.++.   
T Consensus       356 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---  432 (446)
T TIGR01424       356 AREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTV---  432 (446)
T ss_pred             HHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc---
Confidence            43321            0       01123666555  58999999999988665 578899999999999998855   


Q ss_pred             CcccCCcCCC
Q 018320          299 LGFALAVSQK  308 (358)
Q Consensus       299 ~~yap~~~~~  308 (358)
                       ..+|.+++.
T Consensus       433 -~~hPt~~e~  441 (446)
T TIGR01424       433 -GIHPSSAEE  441 (446)
T ss_pred             -ccCCChHHH
Confidence             566777654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.3e-35  Score=294.03  Aligned_cols=275  Identities=19%  Similarity=0.228  Sum_probs=212.1

Q ss_pred             CCccCCCCCCC-CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            6 KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~~ipG~~-~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|..+++||.+ .+++++..      .+.+. . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. ++++
T Consensus       130 ~p~~p~i~G~~~~~~v~~~~------~~~~~-~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~  200 (441)
T PRK08010        130 QTVVPPIPGITTTPGVYDST------GLLNL-K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRD  200 (441)
T ss_pred             cCCCCCCCCccCCCCEEChh------Hhhcc-c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHH
Confidence            35556788864 46676432      22221 1 14789999999999999999999999999999999999987 7999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEe
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVT  160 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd  160 (358)
                      +.+.+.+.|+++||++++++++++++.+ ++.+ .+.+.++ ++++|.|++++|++||++++.   ..+.+ ++|+|.||
T Consensus       201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd  277 (441)
T PRK08010        201 IADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD  277 (441)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC
Confidence            9999999999999999999999999863 3332 3444444 689999999999999998542   23555 56889999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeeccc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNV  238 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~  238 (358)
                      +++||+.|+|||+|||+..+.          +...|..||+.+++||+|....  ..+..+|+  ..++++.++++|+++
T Consensus       278 ~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~ia~vGlte  345 (441)
T PRK08010        278 KYLHTTADNIWAMGDVTGGLQ----------FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPPLSRVGMTE  345 (441)
T ss_pred             CCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCCceeeeCCH
Confidence            999999999999999998653          4557888999999999985221  23445664  457899999999998


Q ss_pred             ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhc
Q 018320          239 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  297 (358)
Q Consensus       239 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  297 (358)
                      .++...|           +       .+..+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.+.   
T Consensus       346 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~---  422 (441)
T PRK08010        346 EQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQ---  422 (441)
T ss_pred             HHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc---
Confidence            6543221           1       11123666554  58999999999988655 67889999999999998854   


Q ss_pred             CCcccCCcCCC
Q 018320          298 GLGFALAVSQK  308 (358)
Q Consensus       298 ~~~yap~~~~~  308 (358)
                       +.++|.+++.
T Consensus       423 -~~~hPt~~e~  432 (441)
T PRK08010        423 -IFTHPSMSES  432 (441)
T ss_pred             -cccCCchHHH
Confidence             4678888764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-35  Score=295.93  Aligned_cols=272  Identities=24%  Similarity=0.307  Sum_probs=211.3

Q ss_pred             CCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHH
Q 018320           12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE   91 (358)
Q Consensus        12 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~   91 (358)
                      +||.+.++. .+.+.+++.++..     .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+
T Consensus       149 ~pg~~~~~~-~v~~~~~~~~~~~-----~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~  221 (462)
T PRK06416        149 LPGIEIDGR-VIWTSDEALNLDE-----VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAER  221 (462)
T ss_pred             CCCCCCCCC-eEEcchHhhCccc-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHH
Confidence            355544442 2234455544321     4689999999999999999999999999999999999986 89999999999


Q ss_pred             HHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC---cEEecCeEEEeeCCCCChhhh---hcccccccCcEEEeccccC
Q 018320           92 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQS  165 (358)
Q Consensus        92 ~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~---~~~~~~~~g~i~vd~~~~t  165 (358)
                      .|+++||++++++++++++.+++ . ..+.+.++   +++++|.||+++|++|+++++   ...+..++|+|.||+++||
T Consensus       222 ~l~~~gV~i~~~~~V~~i~~~~~-~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t  299 (462)
T PRK06416        222 ALKKRGIKIKTGAKAKKVEQTDD-G-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRT  299 (462)
T ss_pred             HHHHcCCEEEeCCEEEEEEEeCC-E-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCcc
Confidence            99999999999999999986333 2 34555555   679999999999999999875   2235455788999999999


Q ss_pred             CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc
Q 018320          166 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG  245 (358)
Q Consensus       166 ~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g  245 (358)
                      +.|+|||+|||+..+          +++..|..||+.+|.||++.....++..+|  ...++++.++++|+++.++...|
T Consensus       300 ~~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~--~~~~~~~~~a~vG~te~~a~~~g  367 (462)
T PRK06416        300 NVPNIYAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIP--AVTYTHPEVASVGLTEAKAKEEG  367 (462)
T ss_pred             CCCCEEEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCC--eEEECCCceEEEeCCHHHHHhcC
Confidence            999999999999743          457789999999999999865323333444  45679999999999986543221


Q ss_pred             -----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCC
Q 018320          246 -----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALA  304 (358)
Q Consensus       246 -----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~  304 (358)
                                 .       ....+|.++.+  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.    .++|.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt  443 (462)
T PRK06416        368 FDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTI----HPHPT  443 (462)
T ss_pred             CCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCC
Confidence                       0       01123666554  68999999999988655 678899999999999998865    56777


Q ss_pred             cCCC
Q 018320          305 VSQK  308 (358)
Q Consensus       305 ~~~~  308 (358)
                      +++.
T Consensus       444 ~~e~  447 (462)
T PRK06416        444 LSEA  447 (462)
T ss_pred             HHHH
Confidence            7654

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.4e-35  Score=295.78  Aligned_cols=274  Identities=21%  Similarity=0.253  Sum_probs=212.7

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+...+++   .+++..+.     ..+++++|||+|++|+|+|..|+++|.+||++++ +++++. +++++
T Consensus       151 ~p~~p~i~G~~~~~~~~---~~~~~~l~-----~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~  220 (468)
T PRK14694        151 RPAEPPVPGLAETPYLT---STSALELD-----HIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAV  220 (468)
T ss_pred             CCCCCCCCCCCCCceEc---chhhhchh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHH
Confidence            56667788876443332   23443332     1478999999999999999999999999999987 467775 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---cccccccCcEEEecc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGR  162 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~~~g~i~vd~~  162 (358)
                      .+.+++.|+++||++++++.+++++.+ ++. ..+.+. +.++++|.|++++|++|+++++.   ..+..++|.|.||++
T Consensus       221 ~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~  297 (468)
T PRK14694        221 GEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETN-AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH  297 (468)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEC-CCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC
Confidence            999999999999999999999999863 332 234444 44799999999999999998752   224456788999999


Q ss_pred             ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018320          163 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  242 (358)
Q Consensus       163 ~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  242 (358)
                      ++|+.|+|||+|||+..+.          .+..|..||+.||.||++.....++..+|.+  .++++.++++|+++.++.
T Consensus       298 ~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~  365 (468)
T PRK14694        298 LQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQVATVGLSEAEAQ  365 (468)
T ss_pred             cccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCCeEEeeCCHHHHH
Confidence            9999999999999997643          4667889999999999986544455667765  478999999999986543


Q ss_pred             EEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcc
Q 018320          243 HYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGF  301 (358)
Q Consensus       243 ~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y  301 (358)
                      ..|                  ..+..+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.    ..
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~  441 (468)
T PRK14694        366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADEL----FP  441 (468)
T ss_pred             HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc----cC
Confidence            221                  011234766654  58999999999987655 578899999999999999877    35


Q ss_pred             cCCcCCC
Q 018320          302 ALAVSQK  308 (358)
Q Consensus       302 ap~~~~~  308 (358)
                      +|.+++.
T Consensus       442 hPt~~e~  448 (468)
T PRK14694        442 YLTMVEG  448 (468)
T ss_pred             CCchHHH
Confidence            6777664

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.4e-35  Score=295.21  Aligned_cols=275  Identities=18%  Similarity=0.194  Sum_probs=212.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++++.+.+++++.   +++..+.    . .+++++|||||++|+|+|..|.++|.+||++++.+++++. +++++
T Consensus       143 ~p~~~p~~~~~~~~v~~~---~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~  213 (458)
T PRK06912        143 EPTELPFAPFDGKWIINS---KHAMSLP----S-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDI  213 (458)
T ss_pred             CCCCCCCCCCCCCeEEcc---hHHhCcc----c-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHH
Confidence            344555677655555532   3333322    1 3689999999999999999999999999999999999987 79999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChhhh--h-cccccccCcEEEe
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTLEKGGIKVT  160 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~--~-~~~~~~~g~i~vd  160 (358)
                      .+.+.+.|+++||++++++++++++.+ +.. ..+.. +|  .++++|.|++++|++|+++.+  + ..+...+++|.||
T Consensus       214 ~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd  290 (458)
T PRK06912        214 AHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVN  290 (458)
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeC
Confidence            999999999999999999999999753 222 22332 34  369999999999999999754  2 2355545569999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE  240 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  240 (358)
                      +++||+.|+|||+|||+..+          +++..|.+||+.||.+|+|.....++..+|..+  +++..++++|+++.+
T Consensus       291 ~~~~ts~~~VyA~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~  358 (458)
T PRK06912        291 EHMQTNVPHIYACGDVIGGI----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQ  358 (458)
T ss_pred             CCeecCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHH
Confidence            99999999999999998643          467789999999999999865434456788754  568899999998864


Q ss_pred             EEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCC
Q 018320          241 VVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL  299 (358)
Q Consensus       241 ~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~  299 (358)
                      +...+           .       ....+|.++.+  ++++|||+|++|+++.+ ++.++.||++++|++||.++.    
T Consensus       359 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----  434 (458)
T PRK06912        359 AREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFI----  434 (458)
T ss_pred             HHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----
Confidence            42211           0       01123666555  58999999999988665 678899999999999988764    


Q ss_pred             cccCCcCCC
Q 018320          300 GFALAVSQK  308 (358)
Q Consensus       300 ~yap~~~~~  308 (358)
                      .|+|+|++.
T Consensus       435 ~~hPt~~e~  443 (458)
T PRK06912        435 AAHPTLSEA  443 (458)
T ss_pred             ccCCCHHHH
Confidence            788998875

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-35  Score=301.73  Aligned_cols=277  Identities=18%  Similarity=0.198  Sum_probs=210.0

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   86 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~   86 (358)
                      |..+++++.+.+++++.   +++..+..     .+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++.
T Consensus       286 P~~P~~~~~~~~~V~ts---~d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis  356 (659)
T PTZ00153        286 PNIPDNIEVDQKSVFTS---DTAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVA  356 (659)
T ss_pred             CCCCCCCCCCCCcEEeh---HHhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHH
Confidence            33334455555567753   55554432     3789999999999999999999999999999999999996 899999


Q ss_pred             HHHHHHH-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-------C--------cEEecCeEEEeeCCCCChhhhh--c
Q 018320           87 SYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--------NRLPTDMVVVGIGIRPNTSLFE--G  148 (358)
Q Consensus        87 ~~~~~~l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~i~~D~vi~a~G~~p~~~l~~--~  148 (358)
                      +.+.+.+ +++||++++++.|++++.++++....+.+.+       +        +++++|.|++|+|++||++.+.  .
T Consensus       357 ~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~  436 (659)
T PTZ00153        357 KYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDK  436 (659)
T ss_pred             HHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchh
Confidence            9998876 6799999999999999864433323343321       1        3799999999999999998652  2


Q ss_pred             -ccccccCcEEEeccccCC------CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC-----------
Q 018320          149 -QLTLEKGGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-----------  210 (358)
Q Consensus       149 -~~~~~~g~i~vd~~~~t~------~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-----------  210 (358)
                       .+..++|+|.||++|||+      +|+|||+|||+..+          +++..|.+||+.|+++|++.           
T Consensus       437 ~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~  506 (659)
T PTZ00153        437 LKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALKVVDWIEGKGKENVNINVEN  506 (659)
T ss_pred             cCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence             355566889999999997      69999999998543          46778999999999999986           


Q ss_pred             --CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-------------cC-------C--------------------
Q 018320          211 --DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------------NF-------S--------------------  248 (358)
Q Consensus       211 --~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-------------~~-------~--------------------  248 (358)
                        .....+..+|.  ..++++.++++|+++.++...+             ..       +                    
T Consensus       507 ~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~  584 (659)
T PTZ00153        507 WASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTV  584 (659)
T ss_pred             ccccccccCcCCE--EEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccc
Confidence              22233455664  4467889999999886543222             00       0                    


Q ss_pred             --CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          249 --GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       249 --~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                        ..+|.|+++  ++++|||+|++|+++.+ |+.++.||++++|++||.++.    .++|.+++.
T Consensus       585 ~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~----~~hPT~sE~  645 (659)
T PTZ00153        585 DNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMV----HSHPTISEV  645 (659)
T ss_pred             cCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----CCCCChHHH
Confidence              234666555  58999999999998766 577899999999999998865    356766654

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=9.2e-36  Score=295.52  Aligned_cols=310  Identities=22%  Similarity=0.271  Sum_probs=261.9

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      .|-.+++||.++++||.+|+++|...+.+.-+  ..++.+|||||..|+|+|..|.+.|.+|++++..+.+|.+++|+..
T Consensus       112 ~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar--~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~a  189 (793)
T COG1251         112 YPFILPIPGSDLPGVFVYRTIDDVEAMLDCAR--NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTA  189 (793)
T ss_pred             cccccCCCCCCCCCeeEEecHHHHHHHHHHHh--ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHH
Confidence            35555699999999999999999999988843  4567999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEeccccC
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS  165 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~t  165 (358)
                      ...+++.++++|++++++...+++..  ++++..+.++||+.+++|.|++|+|.+||+++........+.+|.||++|||
T Consensus       190 g~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqT  267 (793)
T COG1251         190 GRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQT  267 (793)
T ss_pred             HHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeecccccc
Confidence            99999999999999999998888863  6677899999999999999999999999999998763333348999999999


Q ss_pred             CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc----ceE
Q 018320          166 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV----GEV  241 (358)
Q Consensus       166 ~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~----~~~  241 (358)
                      |+|+|||+|+|+++....+      .+++++.+|++.+|+++++...+.....+++...++.+.++.+.|.-.    .+.
T Consensus       268 sdpdIYAvGEcae~~g~~y------GLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~  341 (793)
T COG1251         268 SDPDIYAVGECAEHRGKVY------GLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAES  341 (793)
T ss_pred             cCCCeeehhhHHHhcCccc------eehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchhhcCCCce
Confidence            9999999999999987665      478899999999999999987544566677777888999999888643    345


Q ss_pred             EEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCCCCCCCcccccccc
Q 018320          242 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVP  321 (358)
Q Consensus       242 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~~~~~n  321 (358)
                      +.+.|.....|.++.+++++|+|+.++|. ...-..+-.+|..+.+++++.+..-....+.|+-+.+..|.+..+|. ||
T Consensus       342 iv~~D~~~~iYKrlvL~dd~IvgavL~GD-t~d~~~l~~li~~~~~~se~r~~li~~~~~~~~~~v~~lpd~~~IC~-Cn  419 (793)
T COG1251         342 IVFRDEQRGIYKKLVLKDDKIVGAVLYGD-TSDGGWLLDLILKGADISEIRDTLILPQGSAPSLGVAALPDSAQICG-CN  419 (793)
T ss_pred             EEEecccccceeEEEEeCCeEEEEEEEee-cccchHHHHHHhcCCCccccchhhccccccCCccchhhCCCCCeeec-CC
Confidence            66666665669999999999999999995 44456677889999999887765544444578888888999998887 55


Q ss_pred             ccccCc
Q 018320          322 GLVLGK  327 (358)
Q Consensus       322 ~~~~~~  327 (358)
                      .++...
T Consensus       420 ~VtKG~  425 (793)
T COG1251         420 GVTKGA  425 (793)
T ss_pred             CccHHH
Confidence            555433

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=2.4e-35  Score=292.98  Aligned_cols=275  Identities=20%  Similarity=0.237  Sum_probs=212.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+  .++   +.+++..+    . ..+++++|||+|++|+|+|..|++.|.+||++++++.+++. +++++
T Consensus       142 ~p~~p~i~g~~--~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  210 (450)
T PRK06116        142 RPSIPDIPGAE--YGI---TSDGFFAL----E-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDI  210 (450)
T ss_pred             CCCCCCCCCcc--eeE---chhHhhCc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHH
Confidence            45566688864  233   22232222    1 14789999999999999999999999999999999988875 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.|+++||+++++++|++++.++++.+ .+.+.+|+++++|.|++++|++|+++.+  + ..+.+ ++|+|.||+
T Consensus       211 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  289 (450)
T PRK06116        211 RETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDE  289 (450)
T ss_pred             HHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCC
Confidence            99999999999999999999999986444433 4677788899999999999999999843  2 33555 578899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG  239 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~  239 (358)
                      ++||+.|+|||+|||+..+          +++..|++||+.||+||++...  ...+..+|+.++  ..+.++++|+++.
T Consensus       290 ~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if--~~p~~a~vGlte~  357 (450)
T PRK06116        290 YQNTNVPGIYAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVF--SHPPIGTVGLTEE  357 (450)
T ss_pred             CCCcCCCCEEEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEe--CCCccEEeeCCHH
Confidence            9999999999999998643          4577899999999999998542  235567786543  3348899999875


Q ss_pred             eEEEEc----------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhh
Q 018320          240 EVVHYG----------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  296 (358)
Q Consensus       240 ~~~~~g----------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  296 (358)
                      ++...+          .          .+..+|.|+++  ++++|||+|++|+++.+ ++.++.||+.++|++||.++. 
T Consensus       358 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~-  436 (450)
T PRK06116        358 EAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTV-  436 (450)
T ss_pred             HHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc-
Confidence            432211          0          01234666655  58999999999988655 678899999999999998865 


Q ss_pred             cCCcccCCcCCC
Q 018320          297 QGLGFALAVSQK  308 (358)
Q Consensus       297 ~~~~yap~~~~~  308 (358)
                         ..+|.+++.
T Consensus       437 ---~~hPt~~e~  445 (450)
T PRK06116        437 ---AIHPTAAEE  445 (450)
T ss_pred             ---ccCCChHHH
Confidence               456766654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4.1e-35  Score=292.25  Aligned_cols=274  Identities=20%  Similarity=0.231  Sum_probs=208.6

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH
Q 018320           11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   90 (358)
Q Consensus        11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~   90 (358)
                      ++||.+.++.+.+.+ +++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus       150 ~ipg~~~~~~~~~~~-~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~  222 (466)
T PRK06115        150 PLPGVTIDNQRIIDS-TGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQ  222 (466)
T ss_pred             CCCCCCCCCCeEECH-HHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHH
Confidence            467765555554432 333222    1 25799999999999999999999999999999999999997 8999999999


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-C--CCcEEecCeEEEeeCCCCChhhhh--c-ccccccCcEEEecccc
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-R--DGNRLPTDMVVVGIGIRPNTSLFE--G-QLTLEKGGIKVTGRLQ  164 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~--~g~~i~~D~vi~a~G~~p~~~l~~--~-~~~~~~g~i~vd~~~~  164 (358)
                      +.|++.||++++++++++++.++++....+.. .  +++++++|.|++++|++||++.+.  . .+..+.+++.||++++
T Consensus       223 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~  302 (466)
T PRK06115        223 KALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHR  302 (466)
T ss_pred             HHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCee
Confidence            99999999999999999998643332222222 1  235799999999999999998542  2 2445444588999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY  244 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  244 (358)
                      |+.|+|||+|||+..+          +++..|.+||+.+|+||++.....++..+|..+.  .++.++++|+++.++...
T Consensus       303 Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~--t~p~ia~vGlte~~a~~~  370 (466)
T PRK06115        303 TSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIY--TRPEVATVGKTEEQLKAE  370 (466)
T ss_pred             cCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE--CCcccEEeeCCHHHHHHC
Confidence            9999999999999754          3678899999999999998654346667887653  467899999988654221


Q ss_pred             c-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320          245 G-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFAL  303 (358)
Q Consensus       245 g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap  303 (358)
                      |           +       .+..+|.++.+  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.    ..+|
T Consensus       371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~----~~hP  446 (466)
T PRK06115        371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTC----HPHP  446 (466)
T ss_pred             CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCc----cCCC
Confidence            1           1       11124666554  58999999999988665 578899999999999998755    3345


Q ss_pred             CcCC
Q 018320          304 AVSQ  307 (358)
Q Consensus       304 ~~~~  307 (358)
                      .+++
T Consensus       447 t~~e  450 (466)
T PRK06115        447 TRSE  450 (466)
T ss_pred             ChHH
Confidence            5554

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=2.4e-35  Score=294.84  Aligned_cols=274  Identities=19%  Similarity=0.212  Sum_probs=210.1

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+...+++  + .+.  +..   ...+++++|||+|++|+|+|..|+++|.+||++++. ++++. +|+++
T Consensus       161 ~p~~p~i~G~~~~~~~~--~-~~~--l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~  230 (479)
T PRK14727        161 TPTIPPIPGLMDTPYWT--S-TEA--LFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLL  230 (479)
T ss_pred             CCCCCCCCCcCccceec--c-hHH--hcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHH
Confidence            46666788875433332  1 222  111   124799999999999999999999999999999885 67776 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.|++.||++++++++++++.++++  ..+.+.++ ++++|.|++++|++||+.++  +. .+.+ ++|+|.||+
T Consensus       231 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~  307 (479)
T PRK14727        231 GETLTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP  307 (479)
T ss_pred             HHHHHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC
Confidence            999999999999999999999999763332  33555444 69999999999999999854  22 3555 568899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  241 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  241 (358)
                      +|||+.|+|||+|||+..+.          .+..|..||+.||.||++.....++..+|+.  .++++.++++|+++.++
T Consensus       308 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a  375 (479)
T PRK14727        308 AMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQVATVGLSEAKA  375 (479)
T ss_pred             CeecCCCCEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCceeeeeCCHHHH
Confidence            99999999999999997653          3567889999999999987544455667754  47889999999998654


Q ss_pred             EEEc-----------c-----C--CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320          242 VHYG-----------N-----F--SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  300 (358)
Q Consensus       242 ~~~g-----------~-----~--~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  300 (358)
                      ...|           +     .  ...+|.|+++  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.    .
T Consensus       376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~  451 (479)
T PRK14727        376 HLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQL----F  451 (479)
T ss_pred             HHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCC----c
Confidence            2111           1     0  1123666655  58999999999988655 578899999999999999877    3


Q ss_pred             ccCCcCCC
Q 018320          301 FALAVSQK  308 (358)
Q Consensus       301 yap~~~~~  308 (358)
                      .+|.+++.
T Consensus       452 ~hPt~~E~  459 (479)
T PRK14727        452 PYLTMVEG  459 (479)
T ss_pred             cCCChHHH
Confidence            46666654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4.2e-35  Score=292.36  Aligned_cols=250  Identities=24%  Similarity=0.322  Sum_probs=200.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|++++..+.+.|+++||+++++++|++++.+ ++.+ .
T Consensus       171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~  247 (466)
T PRK07818        171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-T  247 (466)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-E
Confidence            4789999999999999999999999999999999999997 79999999999999999999999999999863 3322 3


Q ss_pred             EEcC--CC--cEEecCeEEEeeCCCCChhhh---hccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc
Q 018320          120 VNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  191 (358)
Q Consensus       120 v~~~--~g--~~i~~D~vi~a~G~~p~~~l~---~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~  191 (358)
                      +.+.  +|  +++++|.|++++|++|+++++   ...+.+ ++|+|.||+++||+.|+|||+|||+..+          +
T Consensus       248 v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~----------~  317 (466)
T PRK07818        248 VTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKL----------Q  317 (466)
T ss_pred             EEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCc----------c
Confidence            3333  56  479999999999999999853   233555 5688999999999999999999998643          4


Q ss_pred             cHHHHHHHHHHHHHHHcCCCCC-C-CCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCc
Q 018320          192 HVDSARKSAKHAVAAIMEPDKT-D-KFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTT  251 (358)
Q Consensus       192 ~~~~A~~~g~~aa~~i~g~~~~-~-~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~  251 (358)
                      ++..|..||+.||.||++.... . .+..+|.  ..++++.++++|+++.++...|           .       .+..+
T Consensus       318 l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g  395 (466)
T PRK07818        318 LAHVAEAQGVVAAETIAGAETLELGDYRMMPR--ATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTG  395 (466)
T ss_pred             cHhHHHHHHHHHHHHHcCCCCCccCccCCCCe--EEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCe
Confidence            6788999999999999986431 1 4455665  4467889999999887543222           1       11123


Q ss_pred             eEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          252 FGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       252 ~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      |.|+..  ++++|||+|++|+++.+ ++.++.||+.++|++||.+..    .++|.+++.
T Consensus       396 ~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  451 (466)
T PRK07818        396 FVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNV----HTHPTLSEA  451 (466)
T ss_pred             EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCc----cCCCchHHH
Confidence            666554  58999999999988665 578899999999999998844    567777764

>PLN02546 glutathione reductase

Probab=100.00  E-value=5.2e-35  Score=295.29  Aligned_cols=274  Identities=18%  Similarity=0.262  Sum_probs=211.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..++|||.+  .++   +.+++..+.   .  .+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       227 ~p~~P~IpG~~--~v~---~~~~~l~~~---~--~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~  295 (558)
T PLN02546        227 RPFIPDIPGIE--HAI---DSDAALDLP---S--KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEV  295 (558)
T ss_pred             CCCCCCCCChh--hcc---CHHHHHhcc---c--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHH
Confidence            44555688864  233   333333221   1  4789999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~  161 (358)
                      ...+.+.|+++||++++++.+++++.++++.+ .+.+.+++...+|.|++++|++||++++  +. .+++ ++|+|.||+
T Consensus       296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~  374 (558)
T PLN02546        296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDE  374 (558)
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECC
Confidence            99999999999999999999999976444433 4555555555699999999999999853  33 3666 568899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecC-ceEEEeecccc
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFT-LSWQFYGDNVG  239 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~-~~~~~~G~~~~  239 (358)
                      ++||++|+|||+|||+..+          .++..|..||+.+|.||++... ...+..+|+.   +|. ..++++|+++.
T Consensus       375 ~l~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~---vft~Peia~VGlte~  441 (558)
T PLN02546        375 YSRTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSA---VFSQPPIGQVGLTEE  441 (558)
T ss_pred             CceeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE---EeCCchHhhccCCHH
Confidence            9999999999999999753          3567899999999999998643 2356778864   444 47999999987


Q ss_pred             eEEEEcc------------------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320          240 EVVHYGN------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  298 (358)
Q Consensus       240 ~~~~~g~------------------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  298 (358)
                      ++...+.                  ....+|.|+.+  ++++|||+|++|+++.+ ++.++.||++++|++||.++.   
T Consensus       442 eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~---  518 (558)
T PLN02546        442 QAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV---  518 (558)
T ss_pred             HHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc---
Confidence            5432210                  01134666654  68999999999988665 578899999999999998755   


Q ss_pred             CcccCCcCCC
Q 018320          299 LGFALAVSQK  308 (358)
Q Consensus       299 ~~yap~~~~~  308 (358)
                       ..+|.+++.
T Consensus       519 -~~hPT~~E~  527 (558)
T PLN02546        519 -GIHPTAAEE  527 (558)
T ss_pred             -cCCCChHHH
Confidence             456666654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=7.2e-35  Score=291.18  Aligned_cols=275  Identities=21%  Similarity=0.264  Sum_probs=208.9

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+. ..+   +.+++..+.     ..+++++|||||++|+|+|..|+++|.+||++++ +.+++. +|+++
T Consensus       154 ~p~~p~ipG~~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~~  222 (484)
T TIGR01438       154 RPRYPGIPGAKE-LCI---TSDDLFSLP-----YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDC  222 (484)
T ss_pred             CCCCCCCCCccc-eee---cHHHhhccc-----ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHHH
Confidence            466667888642 222   333333221     1468999999999999999999999999999998 477775 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC---cEEecCeEEEeeCCCCChhhhh--c-ccccc--cCcE
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLFE--G-QLTLE--KGGI  157 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~~--~-~~~~~--~g~i  157 (358)
                      ++.+.+.|+++||++++++.+++++..+ +. ..+++.++   +++++|.|++++|++||++++.  . ++.++  +|+|
T Consensus       223 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I  300 (484)
T TIGR01438       223 ANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKI  300 (484)
T ss_pred             HHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeE
Confidence            9999999999999999999999997633 32 34555555   3799999999999999998642  2 35552  4889


Q ss_pred             EEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeec
Q 018320          158 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGD  236 (358)
Q Consensus       158 ~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~  236 (358)
                      .||+++||+.|+|||+|||+....         .++..|.+||+.+|+||++... ...+..+|+.+  ++++.++++|+
T Consensus       301 ~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i--~~~p~ia~vGl  369 (484)
T TIGR01438       301 PADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTV--FTPLEYGACGL  369 (484)
T ss_pred             ecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeEE--eCCCceeeecC
Confidence            999999999999999999996422         3567899999999999997542 13456677754  57788999999


Q ss_pred             ccceEEEE-c------------c-------CC--CCceEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCccc
Q 018320          237 NVGEVVHY-G------------N-------FS--GTTFGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVED  290 (358)
Q Consensus       237 ~~~~~~~~-g------------~-------~~--~~~~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~d  290 (358)
                      ++.++... +            .       .+  ..+|.++.+   ++++|||+|++|+++.+ ++.++.||++++|++|
T Consensus       370 te~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~d  449 (484)
T TIGR01438       370 SEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKD  449 (484)
T ss_pred             CHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence            87654321 1            0       00  123666543   37999999999987665 5788999999999999


Q ss_pred             HHHHhhcCCcccCCcCCC
Q 018320          291 LAELETQGLGFALAVSQK  308 (358)
Q Consensus       291 l~~l~~~~~~yap~~~~~  308 (358)
                      |.++.    .++|.+++.
T Consensus       450 l~~~~----~~hPt~sE~  463 (484)
T TIGR01438       450 LDNTI----GIHPVCAEV  463 (484)
T ss_pred             Hhhhh----cCCCChHHH
Confidence            99855    567777765

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=8.8e-35  Score=290.58  Aligned_cols=250  Identities=22%  Similarity=0.293  Sum_probs=202.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++...+.+.|+++||+++++++|++++.++++ + .
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~-v-~  258 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG-V-S  258 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE-E-E
Confidence            4799999999999999999999999999999999999886 89999999999999999999999999999864332 2 3


Q ss_pred             EEcCC--C--cEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc
Q 018320          120 VNLRD--G--NRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  191 (358)
Q Consensus       120 v~~~~--g--~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~  191 (358)
                      +.+.+  |  +++++|.+++++|++|+++++  +. .+.. ++|+|.||++++|+.|+|||+|||+..+          .
T Consensus       259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~  328 (475)
T PRK06327        259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------M  328 (475)
T ss_pred             EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------c
Confidence            44443  3  469999999999999999843  22 2555 5788999999999999999999998753          3


Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc--------c----------CCCCceE
Q 018320          192 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N----------FSGTTFG  253 (358)
Q Consensus       192 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g--------~----------~~~~~~~  253 (358)
                      ++..|..||+.||.+|++......+..+|+.+  ++++.++.+|+++.++...|        .          .+..+|.
T Consensus       329 ~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  406 (475)
T PRK06327        329 LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFV  406 (475)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEE
Confidence            57789999999999999865434566778765  57899999999886542211        0          1112366


Q ss_pred             EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          254 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       254 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      |+.+  ++++|||+|++|+++.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       407 klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  460 (475)
T PRK06327        407 KIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARIC----HAHPTLSEV  460 (475)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCC----cCCCChHHH
Confidence            6655  58999999999988665 678899999999999998865    567777664

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.7e-34  Score=294.33  Aligned_cols=274  Identities=21%  Similarity=0.245  Sum_probs=208.7

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+...++  .+. ++...     ...+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|+++
T Consensus       243 ~p~~p~i~g~~~~~~~--~~~-~~~~~-----~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~  312 (561)
T PRK13748        243 SPAVPPIPGLKETPYW--TST-EALVS-----DTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAI  312 (561)
T ss_pred             CCCCCCCCCCCccceE--ccH-HHhhc-----ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHH
Confidence            4566678887533222  222 22111     124799999999999999999999999999999985 56766 79999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~  161 (358)
                      ++.+.+.|++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++++|++||+.++  + .++.. ++|+|.||+
T Consensus       313 ~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~  389 (561)
T PRK13748        313 GEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ  389 (561)
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC
Confidence            999999999999999999999999763 333 23554444 69999999999999999853  2 33655 568899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  241 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  241 (358)
                      ++||+.|+|||+|||+..+.          .+..|..||+.||.||+|.....++..+|.  ..++++.++++|+++.++
T Consensus       390 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a  457 (561)
T PRK13748        390 GMRTSVPHIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEA  457 (561)
T ss_pred             CcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHH
Confidence            99999999999999997653          455788999999999998654344555674  447899999999988543


Q ss_pred             EEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320          242 VHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  300 (358)
Q Consensus       242 ~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  300 (358)
                      ...|           +       ....+|.|+.+  ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.    .
T Consensus       458 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~  533 (561)
T PRK13748        458 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQL----F  533 (561)
T ss_pred             HHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccc----c
Confidence            2221           0       01234777665  48999999999988665 578899999999999998876    3


Q ss_pred             ccCCcCCC
Q 018320          301 FALAVSQK  308 (358)
Q Consensus       301 yap~~~~~  308 (358)
                      .+|.+++.
T Consensus       534 ~~Pt~~e~  541 (561)
T PRK13748        534 PYLTMVEG  541 (561)
T ss_pred             cCCchHHH
Confidence            45666553

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=3.2e-34  Score=285.73  Aligned_cols=250  Identities=23%  Similarity=0.302  Sum_probs=201.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.|+++||++++++++++++.+ ++.+ .
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~  245 (461)
T TIGR01350       169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQV-V  245 (461)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-E
Confidence            4789999999999999999999999999999999999986 89999999999999999999999999999863 3333 3


Q ss_pred             EEcCCC--cEEecCeEEEeeCCCCChh--hhhcc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccH
Q 018320          120 VNLRDG--NRLPTDMVVVGIGIRPNTS--LFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  193 (358)
Q Consensus       120 v~~~~g--~~i~~D~vi~a~G~~p~~~--l~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~  193 (358)
                      +++.+|  +++++|.+++++|++|+++  +++.. +.. .+|.|.||+++||+.|+|||+|||+..+          +++
T Consensus       246 v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~----------~~~  315 (461)
T TIGR01350       246 YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGP----------MLA  315 (461)
T ss_pred             EEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccH
Confidence            555566  5799999999999999998  34433 555 5688999999999999999999998753          457


Q ss_pred             HHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEE
Q 018320          194 DSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGA  254 (358)
Q Consensus       194 ~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~  254 (358)
                      ..|..||+.+|.+|.+... ..++...|.  ..+++..++.+|+++.++...|           +       ....+|.+
T Consensus       316 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  393 (461)
T TIGR01350       316 HVASHEGIVAAENIAGKEPAPIDYDAVPS--CIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVK  393 (461)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCCCCe--EEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEE
Confidence            7899999999999998653 233344554  4567889999998876432211           1       01123666


Q ss_pred             EEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          255 YWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       255 ~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      +.+  ++++|||+|++|+++.+ ++.++.||++++|++||.++    +.|+|+|++.
T Consensus       394 l~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~----~~~~P~~~e~  446 (461)
T TIGR01350       394 IIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKT----IHPHPTLSEA  446 (461)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC----cccCCCHHHH
Confidence            555  57999999999988655 67889999999999999884    5889999875

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=4.8e-34  Score=282.64  Aligned_cols=275  Identities=20%  Similarity=0.217  Sum_probs=211.2

Q ss_pred             CCccCCCCCC-CCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            6 KLEEFGLSGS-DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~~ipG~-~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|+.+++||. +.+++++.   .++..+   ..  .+++++|||+|++|+|+|..|++.|.+||++++.+++++. .+++
T Consensus       129 ~~~~p~i~G~~~~~~v~~~---~~~~~~---~~--~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~  199 (438)
T PRK07251        129 VSNVLPIPGLADSKHVYDS---TGIQSL---ET--LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPS  199 (438)
T ss_pred             CCCCCCCCCcCCCCcEEch---HHHhcc---hh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHH
Confidence            3555668886 34566643   222222   21  4789999999999999999999999999999999999987 7999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEe
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVT  160 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd  160 (358)
                      +.+.+.+.|+++||++++++++++++.+ ++.+ .+. .+++++++|.+++|+|++|+++.+.   ..+.. ++|.|.||
T Consensus       200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd  276 (438)
T PRK07251        200 VAALAKQYMEEDGITFLLNAHTTEVKND-GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD  276 (438)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC
Confidence            9999999999999999999999999863 3332 233 4577899999999999999987543   23444 56889999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeeccc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNV  238 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~  238 (358)
                      +++||+.|+|||+|||+..+.          ....|..||+.++.++++...  ...+..+|+.  .+++..++++|+++
T Consensus       277 ~~~~t~~~~IyaiGD~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte  344 (438)
T PRK07251        277 DYCQTSVPGVFAVGDVNGGPQ----------FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTE  344 (438)
T ss_pred             CCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCH
Confidence            999999999999999987543          355688899999999987642  1244567765  45899999999988


Q ss_pred             ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhc
Q 018320          239 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  297 (358)
Q Consensus       239 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  297 (358)
                      .++...|           .       .+..+|.|+.+  ++++|||+|++|+++.+ ++.++.||++++|++||.+.   
T Consensus       345 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~---  421 (438)
T PRK07251        345 KEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQ---  421 (438)
T ss_pred             HHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc---
Confidence            7543222           0       01123666554  58999999999988655 67889999999999998774   


Q ss_pred             CCcccCCcCCC
Q 018320          298 GLGFALAVSQK  308 (358)
Q Consensus       298 ~~~yap~~~~~  308 (358)
                       +.++|.+++.
T Consensus       422 -~~~hPt~~e~  431 (438)
T PRK07251        422 -IFTHPTMAEN  431 (438)
T ss_pred             -cccCCChHHH
Confidence             3567777653

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4.2e-34  Score=284.80  Aligned_cols=250  Identities=23%  Similarity=0.290  Sum_probs=198.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++...+++.|+++ |++++++++++++.+++..+ .
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~  244 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-E  244 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-E
Confidence            4789999999999999999999999999999999999986 8999999999999999 99999999999986332122 2


Q ss_pred             EEcCC--CcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccH
Q 018320          120 VNLRD--GNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  193 (358)
Q Consensus       120 v~~~~--g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~  193 (358)
                      +++.+  ++++++|.+++++|++|+++++  + ..+.. ++|.|.||+++||+.|+|||+|||+..+          +++
T Consensus       245 ~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~  314 (460)
T PRK06292        245 ELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLL  314 (460)
T ss_pred             EEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cch
Confidence            32333  3579999999999999999853  2 23555 5688999999999999999999998753          356


Q ss_pred             HHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc--------c----------CCCCceEE
Q 018320          194 DSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N----------FSGTTFGA  254 (358)
Q Consensus       194 ~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g--------~----------~~~~~~~~  254 (358)
                      ..|..||+.||.||++. .....+..+|+.+  ++++.++++|+++.++...|        .          ....+|.|
T Consensus       315 ~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~--~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k  392 (460)
T PRK06292        315 HEAADEGRIAAENAAGDVAGGVRYHPIPSVV--FTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVK  392 (460)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCcCCCCCCeEE--ECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEE
Confidence            78999999999999984 3223455677543  56889999999886543221        0          11234666


Q ss_pred             EEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          255 YWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       255 ~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      +.+  ++++|||+|++|+++.+ ++.++.||++++|++||.++.    .++|.+++.
T Consensus       393 lv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  445 (460)
T PRK06292        393 VYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMP----FYHPTLSEG  445 (460)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCCHHHH
Confidence            555  57999999999988655 678899999999999998876    367777665

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.8e-34  Score=284.57  Aligned_cols=252  Identities=22%  Similarity=0.270  Sum_probs=199.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+++||++++++.+++++...++.+..
T Consensus       179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~  257 (472)
T PRK05976        179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLI  257 (472)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEE
Confidence            3789999999999999999999999999999999999986 799999999999999999999999999997421333334


Q ss_pred             EEcCCC--cEEecCeEEEeeCCCCChhhhh--c-ccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHH
Q 018320          120 VNLRDG--NRLPTDMVVVGIGIRPNTSLFE--G-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  194 (358)
Q Consensus       120 v~~~~g--~~i~~D~vi~a~G~~p~~~l~~--~-~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~  194 (358)
                      +.+.+|  +++++|.+++++|++|+++.+.  . .+..+++.|.||++++|+.|+|||+|||+..+          +++.
T Consensus       258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~----------~~~~  327 (472)
T PRK05976        258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP----------QLAH  327 (472)
T ss_pred             EEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc----------ccHH
Confidence            445566  3699999999999999997542  2 23345788999999999999999999998643          3577


Q ss_pred             HHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEEE
Q 018320          195 SARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGAY  255 (358)
Q Consensus       195 ~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~~  255 (358)
                      .|..||+.|+.+|+|.. ...++..+|.  ..+++..++++|+++.++...|           .       ....+|.++
T Consensus       328 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl  405 (472)
T PRK05976        328 VAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKV  405 (472)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEE
Confidence            89999999999999864 2233444554  4578999999999876432211           0       111236665


Q ss_pred             Ee--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          256 WV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       256 ~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ..  ++++|||+|++|+++.+ ++.++.||+.++|++||.++.    ..+|.+++.
T Consensus       406 i~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  457 (472)
T PRK05976        406 VADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTI----HPHPTLSEA  457 (472)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----ccCCChHHH
Confidence            54  57999999999988665 678999999999999998865    456766654

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=2.8e-33  Score=280.84  Aligned_cols=249  Identities=19%  Similarity=0.298  Sum_probs=197.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|+++|.+||++++. .+++. +|+++++.+.+.|+++||++++++.+++++..+ +. ..
T Consensus       181 ~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~  256 (499)
T PTZ00052        181 DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IK  256 (499)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EE
Confidence            4689999999999999999999999999999874 66765 899999999999999999999999999997633 32 34


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh--c-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHH
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE--G-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  195 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~--~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~  195 (358)
                      +.+.+|+++++|.|++++|++||++++.  . .+++ ++|.+.+++. +|+.|+|||+|||+....         .++..
T Consensus       257 v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~  326 (499)
T PTZ00052        257 VLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPV  326 (499)
T ss_pred             EEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHH
Confidence            6677888999999999999999998763  2 2555 5677777777 999999999999986321         35778


Q ss_pred             HHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccceEEEE-c-c--------C-----------------
Q 018320          196 ARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-G-N--------F-----------------  247 (358)
Q Consensus       196 A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g-~--------~-----------------  247 (358)
                      |.+||+.+|.||++... ..++..+|+.+  +.++.++++|+++.++... + +        .                 
T Consensus       327 A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (499)
T PTZ00052        327 AIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERAR  404 (499)
T ss_pred             HHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccc
Confidence            99999999999998542 13455677755  4578899999987644321 1 0        0                 


Q ss_pred             --------CCCceEEEEe--e-CCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          248 --------SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       248 --------~~~~~~~~~~--~-~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                              +..+|.++..  + +++|||+|++|+++.++ +.++.||++++|++||.++.    ..+|.+++.
T Consensus       405 ~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~----~~hPt~sE~  473 (499)
T PTZ00052        405 KDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMI----GIHPTDAEV  473 (499)
T ss_pred             cccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc----ccCCCCchh
Confidence                    0234766654  2 69999999999987765 67899999999999999876    456766664

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=1.6e-32  Score=266.72  Aligned_cols=252  Identities=21%  Similarity=0.290  Sum_probs=205.5

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.  +++++++.++.+++..+.  .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++
T Consensus       110 ~~~~p~i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~  185 (377)
T PRK04965        110 SAFVPPIPGREL--MLTLNSQQEYRAAETQLR--DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEV  185 (377)
T ss_pred             CCCCCCCCCCce--EEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHH
Confidence            455567898764  899999999998888775  5789999999999999999999999999999999999887789999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      ...+.+.|++.||++++++.+++++.+++ . ..+.+.+|+++++|.||+|+|.+|++.+++.. +..++ +|.||++|+
T Consensus       186 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~  262 (377)
T PRK04965        186 SSRLQHRLTEMGVHLLLKSQLQGLEKTDS-G-IRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQ  262 (377)
T ss_pred             HHHHHHHHHhCCCEEEECCeEEEEEccCC-E-EEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcc
Confidence            99999999999999999999999986322 2 35778899999999999999999999987654 55554 599999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEEecCceEEEeecccceE--
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEV--  241 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~--  241 (358)
                      |+.|+|||+|||+..+..      ..+.+..|..||+.+|.||+|...  .+.. .+....+++++++.++|...++.  
T Consensus       263 ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  334 (377)
T PRK04965        263 TSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMALAKNLLGQNT--PLKLPAMLVKVKTPELPLQLAGETQRQDLR  334 (377)
T ss_pred             cCCCCEEEeeecEeECCc------eeehHHHHHHHHHHHHHHhcCCCc--ccccCCccEEEecCceeeEECCCCCCCCce
Confidence            999999999999987532      235678899999999999999764  3333 33355678999999999765421  


Q ss_pred             EEEccCCCCceEEEEeeCCeEEEEEEeCCCH
Q 018320          242 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTK  272 (358)
Q Consensus       242 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~  272 (358)
                      ...-+..+..|.+++.++|+|+|+.++|+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~  365 (377)
T PRK04965        335 WQINAESQGMVAKGVDEAGQLRAFVVSEDRM  365 (377)
T ss_pred             EEEEeCCCCeEEEEEccCCcEEEEEEEChhH
Confidence            1112223334788888999999999999643

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=3.7e-32  Score=251.36  Aligned_cols=243  Identities=23%  Similarity=0.331  Sum_probs=200.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      -|++++|||+|.||+|++....++|.+||+||-.+++.+. +|++++...++.|.++|++|+++++|+.++.+.+|.+ .
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~  287 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-E  287 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-E
Confidence            4899999999999999999999999999999999999997 9999999999999999999999999999998888744 3


Q ss_pred             EEcCC---C--cEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCccccc
Q 018320          120 VNLRD---G--NRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL  190 (358)
Q Consensus       120 v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~  190 (358)
                      +++.+   +  ++++||.+++++|++|.+.-+.   -++.. .+++|.||+.++|.+|+||+||||+..|.         
T Consensus       288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpM---------  358 (506)
T KOG1335|consen  288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPM---------  358 (506)
T ss_pred             EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcch---------
Confidence            44432   2  4699999999999999997443   23444 67899999999999999999999998875         


Q ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCce
Q 018320          191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTF  252 (358)
Q Consensus       191 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~  252 (358)
                       ++..|..||..+.+.|.+......+..+|...+...  .++.+|.+|.++...|                  +.+..+|
T Consensus       359 -LAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythP--EvawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~  435 (506)
T KOG1335|consen  359 -LAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHP--EVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGF  435 (506)
T ss_pred             -hhhhhhhhchhheeeecccCcccccCCCCceeeccc--ceeeeccchhhHHhcCcceEeeeccccccchhhccCCccce
Confidence             466788999999999998876678888998665443  4678898876432221                  1222347


Q ss_pred             EEEE--eeCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhh
Q 018320          253 GAYW--VNKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELET  296 (358)
Q Consensus       253 ~~~~--~~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~  296 (358)
                      .++.  .++++|||+|++|+.+.++ ...+.||..|.+.+|.++...
T Consensus       436 vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvch  482 (506)
T KOG1335|consen  436 VKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCH  482 (506)
T ss_pred             eEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccC
Confidence            6654  3799999999999998876 456899999999999998763

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=9.4e-32  Score=245.91  Aligned_cols=274  Identities=17%  Similarity=0.244  Sum_probs=212.8

Q ss_pred             CCCCCCccCCCCCCC----CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320            2 NMALKLEEFGLSGSD----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus         2 ~~~~~P~~~~ipG~~----~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      |+|+.|+   |||.+    +++.|      +...        .|||++|||+|+|++|+|..++.+|.++.++-|.+.+|
T Consensus       163 g~p~~Pn---IpG~E~gidSDgff------~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL  225 (478)
T KOG0405|consen  163 GRPIIPN---IPGAELGIDSDGFF------DLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL  225 (478)
T ss_pred             CccCCCC---CCchhhcccccccc------chhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh
Confidence            6788884   78764    34444      2111        58999999999999999999999999999999999999


Q ss_pred             CccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-c
Q 018320           78 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-E  153 (358)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~  153 (358)
                      .. ||+.+++.+.+.|+.+||++|++++++++.+..+|... +..+.|....+|.++||+|+.|++.-+.   -++++ .
T Consensus       226 R~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~  303 (478)
T KOG0405|consen  226 RG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDK  303 (478)
T ss_pred             cc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCC
Confidence            97 99999999999999999999999999999886666443 4445565566999999999999997443   34666 7


Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEEecCceE
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTLSW  231 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~~~  231 (358)
                      +|.|.||++.+||+|+||++||++..-          .+...|+..|+..++.+.+..  .+.+|..+|..++..  .++
T Consensus       304 ~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFsh--P~i  371 (478)
T KOG0405|consen  304 NGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSH--PPI  371 (478)
T ss_pred             CCCEEEeccccCCCCceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEec--CCc
Confidence            899999999999999999999998754          345578889999999999843  336788899755432  346


Q ss_pred             EEeecccceEEEEc---c----CC----------C---CceEEEEe--eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCc
Q 018320          232 QFYGDNVGEVVHYG---N----FS----------G---TTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVV  288 (358)
Q Consensus       232 ~~~G~~~~~~~~~g---~----~~----------~---~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~  288 (358)
                      ..+|+++.|++...   +    .+          +   ....++..  ++.+++|++++|....|| +-++.|+++|.|-
T Consensus       372 gtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTK  451 (478)
T KOG0405|consen  372 GTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATK  451 (478)
T ss_pred             ccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcch
Confidence            78999998764321   0    00          0   11333333  789999999999876664 7899999999999


Q ss_pred             ccHHHHhhcCCcccCCcCCCCC
Q 018320          289 EDLAELETQGLGFALAVSQKPL  310 (358)
Q Consensus       289 ~dl~~l~~~~~~yap~~~~~~~  310 (358)
                      .|+....    +.+|.-++.-+
T Consensus       452 adFD~tV----aIHPTSAEElV  469 (478)
T KOG0405|consen  452 ADFDSTV----AIHPTSAEELV  469 (478)
T ss_pred             hhhccce----eecCCCHHHhe
Confidence            8876544    66676555433

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.95  E-value=2.3e-27  Score=227.74  Aligned_cols=196  Identities=28%  Similarity=0.404  Sum_probs=165.7

Q ss_pred             CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhc-------CCC----CcEEEEcCcHHHHHHHHHHHhC----------
Q 018320            5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-------CSG----GNAVVIGGGYIGMECAASLVIN----------   63 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-------~~~----~~vvVIGgG~~gle~A~~L~~~----------   63 (358)
                      -+++.+++||.. ++.|.+++++||.++++.+..       .+.    .+++|+|||++|+|+|..|+++          
T Consensus       109 s~~~~fgi~G~~-E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~  187 (405)
T COG1252         109 SETNYFGIPGAA-EYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRV  187 (405)
T ss_pred             CcCCcCCCCCHH-HhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcC
Confidence            367889999973 789999999999999987751       112    2699999999999999999864          


Q ss_pred             ---CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeCC
Q 018320           64 ---KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGI  139 (358)
Q Consensus        64 ---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~  139 (358)
                         ..+|++||++++++|. ++++++...++.|+++||++++++.|+++++  +    .+.+.+|. +|++|++||++|.
T Consensus       188 ~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv  260 (405)
T COG1252         188 DPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGV  260 (405)
T ss_pred             CccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCC
Confidence               1389999999999997 9999999999999999999999999999974  2    46777777 5999999999999


Q ss_pred             CCChhhhh-ccccc-ccCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018320          140 RPNTSLFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  212 (358)
Q Consensus       140 ~p~~~l~~-~~~~~-~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  212 (358)
                      +++...-+ ...+. ..|++.||+++|. ++|+|||+|||+...+.    ...++.++.|++||+.+|+||.....
T Consensus       261 ~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~  332 (405)
T COG1252         261 RASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK  332 (405)
T ss_pred             cCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            99876654 34555 4699999999998 89999999999988764    22346788999999999999986543

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-27  Score=218.58  Aligned_cols=279  Identities=20%  Similarity=0.233  Sum_probs=207.4

Q ss_pred             CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      .+|+.++|||.. +.-.   +-+|.-.+    .. .|.+.+|||+|++++|||..|+..|.+||+..|+ -++. .||.+
T Consensus       171 ~RPrYp~IpG~~-Ey~I---TSDDlFsl----~~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~Lr-GFDqd  239 (503)
T KOG4716|consen  171 LRPRYPDIPGAK-EYGI---TSDDLFSL----PY-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLR-GFDQD  239 (503)
T ss_pred             CCCCCCCCCCce-eeee---cccccccc----cC-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecc-cccHH
Confidence            578999999952 2112   11222221    11 4678899999999999999999999999999986 3444 49999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE--cCCC--cEEecCeEEEeeCCCCChhhhh---ccccc--ccC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN--LRDG--NRLPTDMVVVGIGIRPNTSLFE---GQLTL--EKG  155 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~--~~~g--~~i~~D~vi~a~G~~p~~~l~~---~~~~~--~~g  155 (358)
                      |++.+.+.|+++||+|...+.+++++..+++++....  +..+  -+-++|.|+||+|+.+.++-+.   .+++.  ..+
T Consensus       240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~  319 (503)
T KOG4716|consen  240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSG  319 (503)
T ss_pred             HHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCC
Confidence            9999999999999999999888888887777643221  1122  2456999999999999987443   34555  568


Q ss_pred             cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEe
Q 018320          156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFY  234 (358)
Q Consensus       156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~  234 (358)
                      .|.+|+.-+|++|+|||+||......         ++...|++.||..|+.+.+... ..+|..+|+..  |..+....+
T Consensus       320 KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTV--FTPLEy~c~  388 (503)
T KOG4716|consen  320 KIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTV--FTPLEYGCV  388 (503)
T ss_pred             ccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcceeeeccCCceee--ecchhcccc
Confidence            89999999999999999999988643         4566899999999999987643 35777788743  456778899


Q ss_pred             ecccceEEEE-c-------------------cCCCCc-eEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcc
Q 018320          235 GDNVGEVVHY-G-------------------NFSGTT-FGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVE  289 (358)
Q Consensus       235 G~~~~~~~~~-g-------------------~~~~~~-~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~  289 (358)
                      |+++.+++.. |                   ..+... |.+...   ++.+|+|.|++||.+.| ++-++.|++.|+|..
T Consensus       389 GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~  468 (503)
T KOG4716|consen  389 GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKK  468 (503)
T ss_pred             CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHH
Confidence            9998654321 1                   111112 555443   57899999999999776 578999999999999


Q ss_pred             cHHHHhhcCCcccCCc
Q 018320          290 DLAELETQGLGFALAV  305 (358)
Q Consensus       290 dl~~l~~~~~~yap~~  305 (358)
                      ||..+...+..-+..|
T Consensus       469 ~l~ntigIHPt~aE~F  484 (503)
T KOG4716|consen  469 DLDNTIGIHPTTAEEF  484 (503)
T ss_pred             HHhhcccccccchhhe
Confidence            9988774444444334

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.95  E-value=2.9e-26  Score=226.14  Aligned_cols=192  Identities=23%  Similarity=0.363  Sum_probs=159.7

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcC---------------CCCcEEEEcCcHHHHHHHHHHHh--------
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI--------   62 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVIGgG~~gle~A~~L~~--------   62 (358)
                      +|+.+++||.+ ++++++++++|+.++++.+.+.               ..++++|||||++|+|+|..|+.        
T Consensus       124 ~~~~~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~  202 (424)
T PTZ00318        124 RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN  202 (424)
T ss_pred             ccCCCCCCCHH-HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence            46667899975 5788999999999988765421               12489999999999999999986        


Q ss_pred             ------CCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320           63 ------NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  136 (358)
Q Consensus        63 ------~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  136 (358)
                            .+.+||++++++++++. +++++.+.+++.|+++||+++++++|++++.  +    .+.+++|+++++|.+|++
T Consensus       203 ~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~  275 (424)
T PTZ00318        203 LNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWS  275 (424)
T ss_pred             hhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEc
Confidence                  37899999999999986 8999999999999999999999999999964  2    366789999999999999


Q ss_pred             eCCCCChhhhhc-cccc-ccCcEEEecccc-CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          137 IGIRPNTSLFEG-QLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       137 ~G~~p~~~l~~~-~~~~-~~g~i~vd~~~~-t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      +|.+|+. +++. .+.. ++|+|.||++|| |+.|+|||+|||+..+..     ...+++..|++||+.+|.||.+..
T Consensus       276 ~G~~~~~-~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l  347 (424)
T PTZ00318        276 TGVGPGP-LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNEL  347 (424)
T ss_pred             cCCCCcc-hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHh
Confidence            9999985 4443 3555 578999999999 599999999999986431     123567889999999999998654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.94  E-value=5.7e-24  Score=207.68  Aligned_cols=281  Identities=28%  Similarity=0.288  Sum_probs=224.5

Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC-HHHHHHHHHH
Q 018320           14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-PKIASYYEEY   92 (358)
Q Consensus        14 G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~-~~~~~~~~~~   92 (358)
                      +...++++++++.+++..++.....  .++++|+|+|++|+|+|..|+++|++||+++..+++++. +. +++.+.+.+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-~~~~~~~~~~~~~  187 (415)
T COG0446         111 ISDWEGVVTLRLREDAEALKGGAEP--PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-LLDPEVAEELAEL  187 (415)
T ss_pred             ccccCceEEECCHHHHHHHHHHHhc--cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-hhhHHHHHHHHHH
Confidence            5666789999999999999888763  589999999999999999999999999999999999987 45 8999999999


Q ss_pred             HHhCCCEEEcCCeeeEEEEcCCCcEEE-EEcCCCcEEecCeEEEeeCCCCChhhhhccc--cc-ccCcEEEeccccCC-C
Q 018320           93 YKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL--TL-EKGGIKVTGRLQSS-N  167 (358)
Q Consensus        93 l~~~gV~v~~~~~v~~i~~~~~g~v~~-v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~--~~-~~g~i~vd~~~~t~-~  167 (358)
                      |+++||+++++..+.+++...+..... +...++..+++|.+++++|.+||..+.....  .. .+|+|.||++++|+ .
T Consensus       188 l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~  267 (415)
T COG0446         188 LEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKD  267 (415)
T ss_pred             HHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCC
Confidence            999999999999999998633221111 5677888999999999999999988887764  33 67789999999997 9


Q ss_pred             CcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc-eE-----
Q 018320          168 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EV-----  241 (358)
Q Consensus       168 ~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~-----  241 (358)
                      ++|||+|||+..+...++.....++++.|..+++.++.++.+. . .....+++.+.+.++.....+|.+.. +.     
T Consensus       268 ~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  345 (415)
T COG0446         268 PDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L-RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVV  345 (415)
T ss_pred             CCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c-ccccccCceEEEEcCeEEEEecCCcccccceeee
Confidence            9999999999988765555566889999999999999999877 2 45567899999999999999998875 21     


Q ss_pred             --EEEccCC------CCc--eEE--EEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320          242 --VHYGNFS------GTT--FGA--YWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL  303 (358)
Q Consensus       242 --~~~g~~~------~~~--~~~--~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  303 (358)
                        ...+...      ...  ..+  +..++++++|+|+ -.....+..+..++..+.++.++..++   +.|+|
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  415 (415)
T COG0446         346 LVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LEVLKRIGALALAIGLGDTVAELDALD---AIYAP  415 (415)
T ss_pred             EEEeccCcccccccCCCCeEEEEEEEcCcccceehhhh-HHHHhhhhhhhhhhhhcCchhhhhhcc---cccCC
Confidence              1111110      111  111  2236788888887 222335677888889899888887766   66654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.92  E-value=1.4e-23  Score=202.97  Aligned_cols=192  Identities=25%  Similarity=0.298  Sum_probs=155.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHh-----cCCCCcEEEEcCcHHHHHHHHHHHh----CC--CcEEEEeeCC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-----SCSGGNAVVIGGGYIGMECAASLVI----NK--INVTMVFPEA   74 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-----~~~~~~vvVIGgG~~gle~A~~L~~----~g--~~Vtlv~~~~   74 (358)
                      +|+.+++||. .++++++++++|+.++.+.+.     ...+++++|||+|++|+|+|..|++    +|  .+|+++ ..+
T Consensus       106 ~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~  183 (364)
T TIGR03169       106 TTPLSGVEGA-ADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA  183 (364)
T ss_pred             CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC
Confidence            4666778984 578999999999887433332     1135799999999999999999985    34  589999 667


Q ss_pred             cccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-c
Q 018320           75 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-E  153 (358)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~  153 (358)
                      .+++. +++++...+.+.|++.||++++++.+++++.   +   .+.+.+|+++++|.+++++|.+|++.+....+.. +
T Consensus       184 ~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~  256 (364)
T TIGR03169       184 SLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILADGRTLPADAILWATGARAPPWLAESGLPLDE  256 (364)
T ss_pred             ccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCC
Confidence            77775 7899999999999999999999999999853   2   4667789999999999999999997666555555 5


Q ss_pred             cCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          154 KGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       154 ~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      +|+|.||+++|| +.|+|||+|||+..+...     ....+..|++||+.+|.||....
T Consensus       257 ~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~~~~~A~~~g~~~a~ni~~~l  310 (364)
T TIGR03169       257 DGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPKAGVYAVRQAPILAANLRASL  310 (364)
T ss_pred             CCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCCchHHHHHhHHHHHHHHHHHh
Confidence            789999999998 999999999999865321     12356789999999999997543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.92  E-value=6.7e-24  Score=210.60  Aligned_cols=188  Identities=25%  Similarity=0.273  Sum_probs=145.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHh-------cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-------SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-------~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +|+.+++||.+.++|++..++.+...+....+       ...+++|+|||||++|+|+|..|.++|.+||++++.++...
T Consensus       230 ~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~  309 (449)
T TIGR01316       230 LPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM  309 (449)
T ss_pred             CCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC
Confidence            57777899999999997766544333321110       12578999999999999999999999999999998765211


Q ss_pred             ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeEEEeeC
Q 018320           79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIG  138 (358)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~G  138 (358)
                      . ...    ...+.+++.||++++++.++++..+++|++..+++.         +|           .++++|.||+++|
T Consensus       310 ~-~~~----~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG  384 (449)
T TIGR01316       310 T-ARV----EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG  384 (449)
T ss_pred             C-CCH----HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC
Confidence            1 121    223557889999999999999976556666555542         23           2699999999999


Q ss_pred             CCCChhhhhcc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          139 IRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       139 ~~p~~~l~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      +.|++.+++.. +.+ ++|.|.||++++|+.|+|||+|||+..+          .++..|+.||+.||.+|.
T Consensus       385 ~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       385 NGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSIN  446 (449)
T ss_pred             CCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence            99999887654 665 5688999999999999999999998654          357789999999999985

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.90  E-value=2.4e-23  Score=194.66  Aligned_cols=269  Identities=25%  Similarity=0.410  Sum_probs=212.1

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCcccCccCCHHHHHHHHHHH
Q 018320           18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMARLFTPKIASYYEEYY   93 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l   93 (358)
                      ..+.++|.+.|+.++...+.+  .++|.|||+|++|.|+|..|.+.    |.+|+-+......+...+++-++++-.+.+
T Consensus       326 ~kit~fr~p~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~eki  403 (659)
T KOG1346|consen  326 QKITYFRYPADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKI  403 (659)
T ss_pred             hheeEEecchHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHH
Confidence            567889999999999988874  48999999999999999999874    778988877777788888888999999999


Q ss_pred             HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc--ccCcEEEeccccCCCCcE
Q 018320           94 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL--EKGGIKVTGRLQSSNSSV  170 (358)
Q Consensus        94 ~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~--~~g~i~vd~~~~t~~~~V  170 (358)
                      ++.||.++.+..|.++..+. +. ..++++||.++..|.|++|+|-.||++++... ++.  .-|++.||..++. ..||
T Consensus       404 r~~GV~V~pna~v~sv~~~~-~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~Nv  480 (659)
T KOG1346|consen  404 RKGGVDVRPNAKVESVRKCC-KN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENV  480 (659)
T ss_pred             HhcCceeccchhhhhhhhhc-cc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccce
Confidence            99999999999999987532 33 46889999999999999999999999999865 665  4589999998886 4799


Q ss_pred             EEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEec-CceEEEeecccce---------
Q 018320          171 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGE---------  240 (358)
Q Consensus       171 yAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~-~~~~~~~G~~~~~---------  240 (358)
                      |++||++.+.+.+.|. +++.|+.+|.-.||.|+.||.|..  .++.....||+... ++.+..+|+-...         
T Consensus       481 wvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAa--kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~  557 (659)
T KOG1346|consen  481 WVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAA--KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFAL  557 (659)
T ss_pred             eeecchhhhhcccccc-eeccccccceeeceeccccccccc--CCccccceeeeccCcccccceeeecccCCCcceeeec
Confidence            9999999999988775 567899999999999999999876  46777778887543 1223333321100         


Q ss_pred             ---------EEEE--------------------c--------cCC-CCceE---EEEeeCCeEEEEEEeCCCHHHHHHHH
Q 018320          241 ---------VVHY--------------------G--------NFS-GTTFG---AYWVNKGRLVGSFLEGGTKEEYEAIA  279 (358)
Q Consensus       241 ---------~~~~--------------------g--------~~~-~~~~~---~~~~~~g~ilGa~~vg~~~~~~~~~a  279 (358)
                               +-..                    +        ++. ...|+   .||++|++|+|..+++- =.+|....
T Consensus       558 p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~-Fnr~~~AR  636 (659)
T KOG1346|consen  558 PSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNL-FNRIGLAR  636 (659)
T ss_pred             cccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhh-hccchhhH
Confidence                     0000                    0        011 11254   37789999999999873 23677778


Q ss_pred             HHHHcCCCcccHHHHh
Q 018320          280 KATRLQPVVEDLAELE  295 (358)
Q Consensus       280 ~ai~~~~~~~dl~~l~  295 (358)
                      +.|..+...+||.+..
T Consensus       637 ~II~d~kk~ddlnEvA  652 (659)
T KOG1346|consen  637 TIINDNKKYDDLNEVA  652 (659)
T ss_pred             HHhccccchhhHHHHH
Confidence            8899999999987754

>PRK10262 thioredoxin reductase; Provisional

Probab=99.90  E-value=5.2e-23  Score=195.71  Aligned_cols=183  Identities=24%  Similarity=0.273  Sum_probs=140.3

Q ss_pred             CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      .|+.+++||.+   ..+++.....+..      .  ..+++++|||+|++|+|+|..|++.+.+||++++.+.+.   .+
T Consensus       116 ~~~~~~i~g~~~~~~~~v~~~~~~~~~------~--~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~  184 (321)
T PRK10262        116 SARYLGLPSEEAFKGRGVSACATCDGF------F--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AE  184 (321)
T ss_pred             CCCCCCCCCHHHcCCCcEEEeecCCHH------H--cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CC
Confidence            35666788854   2345544332221      1  158999999999999999999999999999999987652   45


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC------cEEecCeEEEeeCCCCChhhhhcccccccCc
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG  156 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g------~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~  156 (358)
                      +.+.+.+.+.|++.||++++++.+++++. +++.+..+++.++      +++++|.|++++|++|++.++...+.+++|+
T Consensus       185 ~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~  263 (321)
T PRK10262        185 KILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGY  263 (321)
T ss_pred             HHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCE
Confidence            77788888999999999999999999975 3333444554432      4799999999999999999887666667789


Q ss_pred             EEEec-----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          157 IKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       157 i~vd~-----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |.||+     +++|+.|+|||+|||+..+.         ..+..|+.+|..||..|..
T Consensus       264 i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~---------~~~~~A~~~g~~Aa~~~~~  312 (321)
T PRK10262        264 IKVQSGIHGNATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAER  312 (321)
T ss_pred             EEECCCCcccccccCCCCEEECeeccCCCc---------ceEEEEehhHHHHHHHHHH
Confidence            99997     78999999999999997532         1233477788888877643

>PRK12831 putative oxidoreductase; Provisional

Probab=99.90  E-value=1.8e-22  Score=200.96  Aligned_cols=188  Identities=23%  Similarity=0.281  Sum_probs=143.5

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHH------hcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-ccC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMA   78 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-~l~   78 (358)
                      +|+.+++||.+.++|++..++.+...+....      ....+++|+|||||++|+|+|..|.++|.+||++.+.+. .++
T Consensus       240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~  319 (464)
T PRK12831        240 LPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP  319 (464)
T ss_pred             CCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence            5777889999999999776655443322110      012579999999999999999999999999999998653 233


Q ss_pred             ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC------------------CCc--EEecCeEEEeeC
Q 018320           79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------------------DGN--RLPTDMVVVGIG  138 (358)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~------------------~g~--~i~~D~vi~a~G  138 (358)
                      . ...+    + +.+++.||++++++.++++..+++|++..+++.                  +|+  ++++|.||+++|
T Consensus       320 a-~~~e----~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG  393 (464)
T PRK12831        320 A-RVEE----V-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG  393 (464)
T ss_pred             C-CHHH----H-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC
Confidence            2 1111    1 335678999999999999976556766555432                  222  699999999999


Q ss_pred             CCCChhhhhc--cccc-ccCcEEEecc-ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          139 IRPNTSLFEG--QLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       139 ~~p~~~l~~~--~~~~-~~g~i~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      +.|++.++..  ++.+ ++|.|.||++ ++||.|+|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       394 ~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        394 TSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             CCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            9999988764  3555 5688999988 999999999999998754          3467899999999999854

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.87  E-value=8.3e-22  Score=198.88  Aligned_cols=178  Identities=26%  Similarity=0.394  Sum_probs=136.3

Q ss_pred             CccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320            7 LEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   83 (358)
Q Consensus         7 P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~   83 (358)
                      |+.+++||.+   .++++.....+..      +  ..+++++|||||++|+|+|..|++.|.+||++++.+.+..     
T Consensus       323 ~~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-----  389 (515)
T TIGR03140       323 WRKLGVPGEKEYIGKGVAYCPHCDGP------F--FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-----  389 (515)
T ss_pred             cCCCCCCCHHHcCCCeEEEeeccChh------h--cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-----
Confidence            5666788852   2455554333221      1  1578999999999999999999999999999998876532     


Q ss_pred             HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeCCCCChhhhhccccc-ccCc
Q 018320           84 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGG  156 (358)
Q Consensus        84 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~  156 (358)
                        ...+.+.+++ +||++++++.+++++. +++++..+.+.+   +  +++++|.|++++|++|++++++..+.. .+|+
T Consensus       390 --~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~  466 (515)
T TIGR03140       390 --DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGE  466 (515)
T ss_pred             --hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCe
Confidence              2345666766 6999999999999975 345555566543   2  469999999999999999988765555 5688


Q ss_pred             EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |.||+++||++|+|||+|||+..+..         .+..|+.+|..||.++..
T Consensus       467 I~vd~~~~Ts~p~IyAaGDv~~~~~~---------~~~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       467 IVIDERGRTSVPGIFAAGDVTTVPYK---------QIIIAMGEGAKAALSAFD  510 (515)
T ss_pred             EEECCCCCCCCCCEEEcccccCCccc---------eEEEEEccHHHHHHHHHH
Confidence            99999999999999999999986532         233578899999888754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.87  E-value=4.2e-21  Score=179.89  Aligned_cols=177  Identities=24%  Similarity=0.328  Sum_probs=135.1

Q ss_pred             CCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.+++||.+.   .++++....++      ..  .++++++|||+|++|+|+|..|++.+.+|+++++.+.+.   .+
T Consensus       111 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~--~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~---~~  179 (300)
T TIGR01292       111 SARKLGIPGEDEFLGRGVSYCATCDG------PF--FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR---AE  179 (300)
T ss_pred             CcccCCCCChhhcCCccEEEeeecCh------hh--cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC---cC
Confidence            466667888642   34544333222      11  157899999999999999999999999999999987653   23


Q ss_pred             HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcC-----CCcEEecCeEEEeeCCCCChhhhhccccc-ccC
Q 018320           83 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  155 (358)
Q Consensus        83 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g  155 (358)
                      +    .+.+.++++ ||++++++.+++++.  ++.+..+++.     +++++++|.+++++|++|+.++++..+.+ .+|
T Consensus       180 ~----~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g  253 (300)
T TIGR01292       180 K----ILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGG  253 (300)
T ss_pred             H----HHHHHHHhCCCeEEEeccEEEEEEc--cCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCC
Confidence            3    345566776 999999999999975  2344444432     23579999999999999999888765544 568


Q ss_pred             cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      ++.||++++|+.|+||++|||+....         ..+..|+.||+.||.+|.
T Consensus       254 ~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~  297 (300)
T TIGR01292       254 YIVTDEGMRTSVPGVFAAGDVRDKGY---------RQAVTAAGDGCIAALSAE  297 (300)
T ss_pred             cEEECCCCccCCCCEEEeecccCcch---------hhhhhhhhhHHHHHHHHH
Confidence            99999999999999999999997421         357789999999999985

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.87  E-value=6.5e-21  Score=183.68  Aligned_cols=185  Identities=26%  Similarity=0.341  Sum_probs=137.3

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHH------h---cCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCc
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------K---SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH   75 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~---~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~   75 (358)
                      .|..+++||.+.+++++..  +++..+....      .   ...+++++|||+|++|+|+|..|.++|.+ ||++++.+.
T Consensus       130 ~~~~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        130 KSRKLGIPGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CCCcCCCCCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3556678998888888632  2333322211      0   11268999999999999999999999997 999998764


Q ss_pred             ccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc--------------------CCCcEEecCeEEE
Q 018320           76 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--------------------RDGNRLPTDMVVV  135 (358)
Q Consensus        76 ~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~--------------------~~g~~i~~D~vi~  135 (358)
                      .... ..    ..+.+.|+++||++++++.+++++.  ++.+..+++                    .+++++++|.+|+
T Consensus       208 ~~~~-~~----~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~  280 (352)
T PRK12770        208 NEAP-AG----KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVF  280 (352)
T ss_pred             hhCC-CC----HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEE
Confidence            3221 11    3344568899999999999999974  233333332                    1235799999999


Q ss_pred             eeCCCCChhhhhc--cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          136 GIGIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       136 a~G~~p~~~l~~~--~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      ++|++|++.+...  .+.+ .+++|.||++++|+.|+|||+|||+..+          ..+..|+.||+.||.+|..
T Consensus       281 a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        281 AIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             CcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHH
Confidence            9999999988764  3545 5678999999999999999999998754          2467899999999999854

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.86  E-value=7.7e-21  Score=199.85  Aligned_cols=188  Identities=27%  Similarity=0.327  Sum_probs=143.1

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHH------hcCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCc-cc
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH-CM   77 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~-~l   77 (358)
                      +|+.+++||.+.++|++..++.+...+....      ....+++|+|||||++|+|+|..+.++|.+ ||++++.+. .+
T Consensus       529 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~  608 (752)
T PRK12778        529 LPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEM  608 (752)
T ss_pred             CCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccC
Confidence            5778889999999999766544433222111      012579999999999999999999999997 999998764 23


Q ss_pred             CccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeEEEee
Q 018320           78 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGI  137 (358)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~  137 (358)
                      +. ...+     .+.+++.||++++++.+.++..+++|++..+++.         +|           .++++|.||+|+
T Consensus       609 ~~-~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~  682 (752)
T PRK12778        609 PA-RLEE-----VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSV  682 (752)
T ss_pred             CC-CHHH-----HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECc
Confidence            32 1111     1346788999999999999976566766555542         22           259999999999


Q ss_pred             CCCCChhhhhc--cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          138 GIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       138 G~~p~~~l~~~--~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |++|++.++..  .+.+ .+|.|.||++++|+.|+|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       683 G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        683 GVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             CCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHH
Confidence            99999887654  3555 5688999999999999999999998754          3467899999999999864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.86  E-value=1.7e-20  Score=186.86  Aligned_cols=187  Identities=27%  Similarity=0.290  Sum_probs=137.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHH-HHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc-ccCccCC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVN-VMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~-~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~-~l~~~~~   82 (358)
                      .|+.+++||.+.++|++....-....... ......+++|+|||||++|+|+|..|.+.|. +||++++.+. .++.  .
T Consensus       237 ~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~  314 (457)
T PRK11749        237 LPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--S  314 (457)
T ss_pred             CCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--C
Confidence            46677899998888886433222211100 0011157999999999999999999999998 8999998654 3432  2


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-------------------CCCcEEecCeEEEeeCCCCCh
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-------------------RDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-------------------~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ..    ..+.+++.||++++++.+.++..++ +.+..+++                   .+++++++|.||+++|.+|+.
T Consensus       315 ~~----~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~  389 (457)
T PRK11749        315 EE----EVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP  389 (457)
T ss_pred             HH----HHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence            22    2456788999999999999998633 22222322                   123479999999999999998


Q ss_pred             hhhhc--cccc-ccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          144 SLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       144 ~l~~~--~~~~-~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .++..  .+.+ ++|+|.||+ +++|+.|+|||+|||+..+          .++..|+.||+.||.+|..
T Consensus       390 ~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~  449 (457)
T PRK11749        390 LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHE  449 (457)
T ss_pred             hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            87653  2444 578999998 8999999999999999542          3577899999999999864

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.86  E-value=1.3e-21  Score=184.24  Aligned_cols=191  Identities=23%  Similarity=0.370  Sum_probs=152.8

Q ss_pred             CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcC---------------CCCcEEEEcCcHHHHHHHHHHHhC------
Q 018320            5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVIN------   63 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVIGgG~~gle~A~~L~~~------   63 (358)
                      -+|+.|+|||.. ++.+.++-++|+++++..+-.+               .--++||||||+.|+|+|..|+..      
T Consensus       168 A~~~TFgipGV~-e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~  246 (491)
T KOG2495|consen  168 AEPNTFGIPGVE-ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLR  246 (491)
T ss_pred             CCCCCCCCCchh-hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHH
Confidence            368899999985 7888999999999997654321               123799999999999999999852      


Q ss_pred             --------CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeE
Q 018320           64 --------KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMV  133 (358)
Q Consensus        64 --------g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~v  133 (358)
                              -.+||+++..+++|+. ||..+.++.++.+.+.||++.+++.|..++.   .. ..+...+|  +++++-++
T Consensus       247 k~yp~l~~~i~vtLiEA~d~iL~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~-I~~~~~~g~~~~iPYG~l  321 (491)
T KOG2495|consen  247 KIYPELKKDIKVTLIEAADHILNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE---KT-IHAKTKDGEIEEIPYGLL  321 (491)
T ss_pred             HhhhcchhheEEEeeccchhHHHH-HHHHHHHHHHHHhhhccceeecccEEEeecC---cE-EEEEcCCCceeeecceEE
Confidence                    4689999999999996 9999999999999999999999999999863   12 23444555  57999999


Q ss_pred             EEeeCCCCChh---hhhcccccccCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          134 VVGIGIRPNTS---LFEGQLTLEKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       134 i~a~G~~p~~~---l~~~~~~~~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      +|++|..|..-   |.....+-.+.++.||++||. +.+||||+|||+..+.       ..++++.|.+||.++|+++-
T Consensus       322 VWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~-------~~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  322 VWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRG-------LKPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             EecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccccc-------CccHHHHHHHHHHHHHHHHH
Confidence            99999887653   222211113458999999998 8999999999994332       23689999999999999874

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.85  E-value=3.2e-20  Score=195.45  Aligned_cols=200  Identities=27%  Similarity=0.363  Sum_probs=141.8

Q ss_pred             CCccCCCCCCCCCCeEE-ecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC-C-CcEEEEeeCC-cccCccC
Q 018320            6 KLEEFGLSGSDAENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN-K-INVTMVFPEA-HCMARLF   81 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~-l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~-g-~~Vtlv~~~~-~~l~~~~   81 (358)
                      .|..+++||.+ +++++ +..+.+..+....+.  .+++|+|||||++|+|+|..+.+. | .+||++.|++ ..++. .
T Consensus       635 ~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~--~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~  710 (1019)
T PRK09853        635 KNGGLKLEGGN-QNVIKALPFLEEYKNKGTALK--LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-W  710 (1019)
T ss_pred             CCCCCCCCCcc-CCceehHHHHHHHhhhccccc--CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-c
Confidence            45567788876 56663 222222212222222  589999999999999999999888 4 4899999876 34553 3


Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE----------------EEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV----------------VAVNLRDGNRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v----------------~~v~~~~g~~i~~D~vi~a~G~~p~~~l  145 (358)
                      ++++    .+.+ +.||++++.+.+.+++.  ++++                ..+...++.++++|.||+|+|.+|++++
T Consensus       711 ~eEl----e~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel  783 (1019)
T PRK09853        711 REEY----EEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL  783 (1019)
T ss_pred             HHHH----HHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH
Confidence            3333    3333 46999999998888863  2322                1222334467999999999999999998


Q ss_pred             hhcc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 018320          146 FEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFY  223 (358)
Q Consensus       146 ~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~  223 (358)
                      +... +.. ++|+|.||++++|+.|+|||+|||+..+          ..+..|+.||+.||.+|++... ..+...|.++
T Consensus       784 le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~~-~~~~~~~~~~  852 (1019)
T PRK09853        784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSREG-IRSHQNDKYW  852 (1019)
T ss_pred             HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhcC-CCcccccccc
Confidence            8654 555 5688999999999999999999998654          2467899999999999997653 2444555555


Q ss_pred             EEec
Q 018320          224 SRVF  227 (358)
Q Consensus       224 ~~~~  227 (358)
                      +..+
T Consensus       853 ~~~~  856 (1019)
T PRK09853        853 NNVE  856 (1019)
T ss_pred             cccc
Confidence            5444

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.85  E-value=2.7e-20  Score=189.35  Aligned_cols=178  Identities=24%  Similarity=0.344  Sum_probs=132.9

Q ss_pred             CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.+++||.+   ..+++++.+.++.      .  ..+++++|||||++|+|+|..|+++|.+||++++.+.+..   +
T Consensus       113 ~p~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~  181 (555)
T TIGR03143       113 SPRKLGFPGEEEFTGRGVAYCATCDGE------F--FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---A  181 (555)
T ss_pred             ccCCCCCCCHHHhCCceEEEEeecChh------h--cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---C
Confidence            46667788853   3456655443321      1  1589999999999999999999999999999999886532   3


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE---cCCCcEE----ecCe----EEEeeCCCCChhhhhcccc
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRL----PTDM----VVVGIGIRPNTSLFEGQLT  151 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~~i----~~D~----vi~a~G~~p~~~l~~~~~~  151 (358)
                      ....   .+.++++||++++++.|+++..  ++.+..+.   ..+|++.    ++|.    |++++|++|++.+++..+.
T Consensus       182 ~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~  256 (555)
T TIGR03143       182 KLIA---EKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVE  256 (555)
T ss_pred             HHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcc
Confidence            3322   3334557999999999999974  33333332   3456542    3676    9999999999999887666


Q ss_pred             c-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          152 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       152 ~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      + ++|+|.||++|+|+.|+|||+|||+....         ..+..|..||+.||.+|.
T Consensus       257 l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       257 LDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAE  305 (555)
T ss_pred             cCCCCeEEeCCccccCCCCEEEceeccCCCc---------chheeHHhhHHHHHHHHH
Confidence            6 57889999999999999999999975321         345679999999999984

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.84  E-value=2.6e-20  Score=188.10  Aligned_cols=179  Identities=25%  Similarity=0.387  Sum_probs=135.7

Q ss_pred             CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.+++||.+   ..++++....+..      .  .++++++|||||++|+|+|..|+..+.+||++++.+.+..   +
T Consensus       321 ~~r~~~ipG~~~~~~~~v~~~~~~~~~------~--~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~  389 (517)
T PRK15317        321 RWRNMNVPGEDEYRNKGVAYCPHCDGP------L--FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D  389 (517)
T ss_pred             CcCCCCCCCHHHhcCceEEEeeccCch------h--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c
Confidence            35556788753   2455544322211      1  1589999999999999999999999999999999876532   2


Q ss_pred             HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcC---CC--cEEecCeEEEeeCCCCChhhhhccccc-ccC
Q 018320           83 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  155 (358)
Q Consensus        83 ~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g  155 (358)
                          ..+.+.+.+ .||++++++.+++++. +++++..+++.   +|  +++++|.+++++|.+|++++++..+.+ ++|
T Consensus       390 ----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g  464 (517)
T PRK15317        390 ----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRG  464 (517)
T ss_pred             ----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCC
Confidence                344556665 6999999999999986 34565556554   23  359999999999999999988765555 568


Q ss_pred             cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      +|.||+++||+.|+|||+|||+..+..         .+..|+.+|..||.++..
T Consensus       465 ~i~vd~~l~Ts~p~IyAaGDv~~~~~k---------~~~~A~~eG~~Aa~~~~~  509 (517)
T PRK15317        465 EIIVDARGATSVPGVFAAGDCTTVPYK---------QIIIAMGEGAKAALSAFD  509 (517)
T ss_pred             cEEECcCCCCCCCCEEECccccCCCCC---------EEEEhhhhHHHHHHHHHH
Confidence            899999999999999999999986532         345678888888877654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.84  E-value=5.7e-20  Score=183.66  Aligned_cols=194  Identities=26%  Similarity=0.340  Sum_probs=136.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHH-HHH-HHHH--H--hcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLAD-ANR-LVNV--M--KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA   78 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~d-a~~-i~~~--l--~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~   78 (358)
                      .|+.+++||.+.++|++..++-. +.. +...  .  ....+++|+|||||++|+|+|..+.++|. +||++++.+.+..
T Consensus       240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~  319 (471)
T PRK12810        240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPS  319 (471)
T ss_pred             CCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcc
Confidence            46677899999999986432211 100 0000  0  01257999999999999999999999886 7997766543322


Q ss_pred             ccCCH----HH-HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----CC---------cEEecCeEEEeeCC
Q 018320           79 RLFTP----KI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DG---------NRLPTDMVVVGIGI  139 (358)
Q Consensus        79 ~~~~~----~~-~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g---------~~i~~D~vi~a~G~  139 (358)
                      ..++.    .. .....+.+++.||++++++.+++|.. +++++..+++.     +|         .++++|.||+++|.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~  398 (471)
T PRK12810        320 RRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF  398 (471)
T ss_pred             ccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence            11110    01 11134567788999999999999975 46666555432     22         46999999999999


Q ss_pred             CCCh-hhhhcc-ccc-ccCcEEEe-ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          140 RPNT-SLFEGQ-LTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       140 ~p~~-~l~~~~-~~~-~~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      +|+. .+++.. +.. ++|.|.+| ++++|+.|+|||+|||+..+          .++..|+.||+.||.+|...
T Consensus       399 ~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~  463 (471)
T PRK12810        399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDAY  463 (471)
T ss_pred             CCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHHH
Confidence            9985 465543 555 56889998 79999999999999999743          24668999999999998643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.83  E-value=2e-19  Score=191.39  Aligned_cols=190  Identities=22%  Similarity=0.247  Sum_probs=139.7

Q ss_pred             CCCccCCCCCCCCCCeEEecCHHHHHHHHHHH--------hcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-
Q 018320            5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM--------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-   75 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l--------~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-   75 (358)
                      .+|+.++|||.++++|++..++.+...+....        ....+|+|+|||||.+|+++|..+.++|.+||++.+++. 
T Consensus       403 ~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~  482 (944)
T PRK12779        403 GLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS  482 (944)
T ss_pred             CCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc
Confidence            46888999999999999765554433322111        112579999999999999999999999999999998753 


Q ss_pred             ccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC-CcEEEEEc---------C--------CC--cEEecCeEEE
Q 018320           76 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNL---------R--------DG--NRLPTDMVVV  135 (358)
Q Consensus        76 ~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-g~v~~v~~---------~--------~g--~~i~~D~vi~  135 (358)
                      .+|. .    ...++. ..+.||++++++.+++|..+++ +.+..+++         .        +|  .++++|.||+
T Consensus       483 ~mpa-~----~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~  556 (944)
T PRK12779        483 EMPA-R----VEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM  556 (944)
T ss_pred             cccc-c----HHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence            3332 1    122233 3467999999999999976433 34443322         1        12  3599999999


Q ss_pred             eeCCCCChhhhhc--cccc-ccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          136 GIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       136 a~G~~p~~~l~~~--~~~~-~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      |+|+.|+..+...  .++. ++|.|.||+ .++||.|+|||+|||+..+          .++..|+.+|+.||.+|...
T Consensus       557 AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~  625 (944)
T PRK12779        557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGE  625 (944)
T ss_pred             cCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHH
Confidence            9999999765443  2454 568899996 5899999999999999754          25678999999999998653

>PRK13984 putative oxidoreductase; Provisional

Probab=99.83  E-value=2.9e-19  Score=183.91  Aligned_cols=184  Identities=24%  Similarity=0.244  Sum_probs=133.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhc-----CCCCcEEEEcCcHHHHHHHHHHHhCCC------cEEEEeeC-
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----CSGGNAVVIGGGYIGMECAASLVINKI------NVTMVFPE-   73 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-----~~~~~vvVIGgG~~gle~A~~L~~~g~------~Vtlv~~~-   73 (358)
                      .|+.++|||.+.+++++  ..+.+..+...+..     ..+++++|||||++|+|+|..|.+++.      +|+++... 
T Consensus       380 ~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r  457 (604)
T PRK13984        380 LGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER  457 (604)
T ss_pred             CCccCCCCCcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc
Confidence            36777899998888885  34444444433321     136899999999999999999998853      78887432 


Q ss_pred             -CcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC--------C-----------CcEEecCeE
Q 018320           74 -AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--------D-----------GNRLPTDMV  133 (358)
Q Consensus        74 -~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~--------~-----------g~~i~~D~v  133 (358)
                       ...++.  +.  .+ +.+ +.+.||++++++.++++.. +++++..+++.        +           .+++++|.|
T Consensus       458 ~~~~~~~--~~--~e-~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~V  530 (604)
T PRK13984        458 TFEEMPA--DM--EE-IEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMV  530 (604)
T ss_pred             CcccCCC--CH--HH-HHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEE
Confidence             222332  12  11 222 3467999999999988865 45655554432        1           236999999


Q ss_pred             EEeeCCCCChhhhhcc----cccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          134 VVGIGIRPNTSLFEGQ----LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       134 i~a~G~~p~~~l~~~~----~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |+++|++|+++++...    +..++|.|.||++++|++|+|||+|||+..+.           ...|+.+|+.||.+|..
T Consensus       531 i~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~~  599 (604)
T PRK13984        531 VEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGIDM  599 (604)
T ss_pred             EEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHHH
Confidence            9999999999877532    33467889999999999999999999997642           34689999999999853

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.82  E-value=5.8e-19  Score=176.04  Aligned_cols=186  Identities=26%  Similarity=0.411  Sum_probs=135.7

Q ss_pred             ccCCCCCCCCCCeEEecCHHH--HHHHHHH-------HhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcc-
Q 018320            8 EEFGLSGSDAENVCYLRDLAD--ANRLVNV-------MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-   76 (358)
Q Consensus         8 ~~~~ipG~~~~~v~~l~~~~d--a~~i~~~-------l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~-   76 (358)
                      ..++|||.+.++|++..++..  ...+...       +....+++++|||+|++|+++|..+.++|. +||++++.+.. 
T Consensus       240 ~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~  319 (467)
T TIGR01318       240 MRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN  319 (467)
T ss_pred             CcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc
Confidence            346799999999996533211  1111000       001246899999999999999999999996 79999987653 


Q ss_pred             cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeEEEe
Q 018320           77 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVG  136 (358)
Q Consensus        77 l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a  136 (358)
                      ++. .+.++     +.+++.||++++++.++++..++++++..+++.         +|           .++++|.||++
T Consensus       320 ~~~-~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a  393 (467)
T TIGR01318       320 MPG-SRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMA  393 (467)
T ss_pred             CCC-CHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEEC
Confidence            443 33322     346778999999999999976556666544431         12           36999999999


Q ss_pred             eCCCCCh-hhhhc-cccc-ccCcEEEe----ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          137 IGIRPNT-SLFEG-QLTL-EKGGIKVT----GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       137 ~G~~p~~-~l~~~-~~~~-~~g~i~vd----~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      +|++|+. .++.. .+.. ++|.|.||    ++++|+.|+|||+|||+..+.          ++..|+.+|+.||.+|..
T Consensus       394 ~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~----------~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       394 FGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD----------LVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             CcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc----------HHHHHHHHHHHHHHHHHH
Confidence            9999985 44443 2555 56889999    689999999999999987542          466899999999999853

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.82  E-value=2.9e-19  Score=184.76  Aligned_cols=184  Identities=24%  Similarity=0.339  Sum_probs=132.6

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc-ccCccCCHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPK   84 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~-~l~~~~~~~   84 (358)
                      +..+++||.+.++|++-.++-.  .....-....+++|+|||||++|+|+|..+.+.|. +||++.+.+. .++. .+.+
T Consensus       291 ~~~~~ipG~~~~gv~~~~~~l~--~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e  367 (652)
T PRK12814        291 ASKMGIPGEELPGVISGIDFLR--NVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE  367 (652)
T ss_pred             CCCCCCCCcCcCCcEeHHHHHH--HhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH
Confidence            4456799998888874322111  11100011258999999999999999999999997 5999998764 4553 3333


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE--EEEEcC---------------CCc--EEecCeEEEeeCCCCChhh
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLR---------------DGN--RLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v--~~v~~~---------------~g~--~i~~D~vi~a~G~~p~~~l  145 (358)
                      +    .+. .+.||++++++.+.++..+ ++.+  ..+.+.               +|+  ++++|.||+++|..|++++
T Consensus       368 i----~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l  441 (652)
T PRK12814        368 I----EEA-LAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI  441 (652)
T ss_pred             H----HHH-HHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc
Confidence            3    222 3579999999999998753 3322  222111               122  5899999999999999988


Q ss_pred             hhcc-ccc-ccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          146 FEGQ-LTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       146 ~~~~-~~~-~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      +... +.+ .+|.|.||+ +++|+.|+|||+|||+..+          .++..|+.||+.||.+|..
T Consensus       442 l~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~  498 (652)
T PRK12814        442 AEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDL  498 (652)
T ss_pred             ccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            7643 555 568899996 6899999999999998654          3467899999999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.82  E-value=3.6e-19  Score=190.97  Aligned_cols=188  Identities=21%  Similarity=0.265  Sum_probs=139.6

Q ss_pred             CCCccCCCCCCCCCCeEEecCHHHHHHHHHH-----H--hcCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCcc
Q 018320            5 LKLEEFGLSGSDAENVCYLRDLADANRLVNV-----M--KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHC   76 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~-----l--~~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~   76 (358)
                      .+|+.++|||.+.++|++..++.+...+...     .  ....+|+|+|||||++|+++|..+.++|.+ |+++.+....
T Consensus       528 ~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~  607 (1006)
T PRK12775        528 GAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA  607 (1006)
T ss_pred             CCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc
Confidence            3578889999999999976554443332110     0  012579999999999999999999999985 7888765432


Q ss_pred             -cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------------CC--cEEecCeEEEe
Q 018320           77 -MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------------DG--NRLPTDMVVVG  136 (358)
Q Consensus        77 -l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------------~g--~~i~~D~vi~a  136 (358)
                       ++.  .+.    -.+.+++.||++++++.++++..+++|++..+++.                 +|  .++++|.||+|
T Consensus       608 em~a--~~~----e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A  681 (1006)
T PRK12775        608 EAPA--RIE----EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA  681 (1006)
T ss_pred             cCCC--CHH----HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence             221  111    12356778999999999999976567776655432                 12  25999999999


Q ss_pred             eCCCCChhhhhc--cccc-ccCcEEEec-----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          137 IGIRPNTSLFEG--QLTL-EKGGIKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       137 ~G~~p~~~l~~~--~~~~-~~g~i~vd~-----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      +|++|++.++..  .+.+ .+|.|.+|+     +++||.|+|||+|||+..+          .++..|+.+|+.||.+|.
T Consensus       682 iG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        682 LGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIA  751 (1006)
T ss_pred             CCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHH
Confidence            999999887653  3555 568899996     7899999999999998654          346789999999999975

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=4.1e-19  Score=166.66  Aligned_cols=163  Identities=29%  Similarity=0.357  Sum_probs=130.4

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhC-
Q 018320           18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK-   96 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-   96 (358)
                      .+|+++-+-+.  .+       ++|+++|||||.+++|.|..|.+.+.+||+++|++.+.+   .    +.+.+.++++ 
T Consensus       129 ~gv~yc~~cdg--~~-------~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~  192 (305)
T COG0492         129 KGVSYCATCDG--FF-------KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNV  192 (305)
T ss_pred             CceEEeeecCc--cc-------cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcC
Confidence            57877766332  12       578999999999999999999999999999999987654   2    3344555555 


Q ss_pred             CCEEEcCCeeeEEEEcCCCcEEEEEcCCC----cEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEeccccCCCCcEE
Q 018320           97 GVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVY  171 (358)
Q Consensus        97 gV~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~~~t~~~~Vy  171 (358)
                      +|++++++.+.++..+  + +..+++.+.    +.+++|.+++++|..|++++++....+ ++|+|.+|+.|+||+|+||
T Consensus       193 ~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGif  269 (305)
T COG0492         193 KIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIF  269 (305)
T ss_pred             CeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEE
Confidence            8999999999999853  3 556666653    368999999999999999999876444 8899999999999999999


Q ss_pred             EEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          172 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       172 AiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      |+|||+.....         ++..|..+|..||.++.
T Consensus       270 AaGDv~~~~~r---------qi~ta~~~G~~Aa~~a~  297 (305)
T COG0492         270 AAGDVADKNGR---------QIATAAGDGAIAALSAE  297 (305)
T ss_pred             EeEeeccCccc---------EEeehhhhHHHHHHHHH
Confidence            99999987642         45567778888887654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.81  E-value=1.8e-18  Score=179.40  Aligned_cols=189  Identities=24%  Similarity=0.376  Sum_probs=137.1

Q ss_pred             CCCccCCCCCCCCCCeEEecCH-----HHHHHHHHHH----hcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320            5 LKLEEFGLSGSDAENVCYLRDL-----ADANRLVNVM----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~-----~da~~i~~~l----~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      ..+..+++||.+.++|+.....     .+...+....    ....+++|+|||||++|+++|..+.++|. +||++.+.+
T Consensus       423 ~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        423 YRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            3455678999999999853211     1111111000    01257899999999999999999999997 699999876


Q ss_pred             cc-cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeE
Q 018320           75 HC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMV  133 (358)
Q Consensus        75 ~~-l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~v  133 (358)
                      .. ++. .+.+     .+.+++.||++++++.++++..+++|++..+++.         +|           .++++|.|
T Consensus       503 ~~~~~~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~V  576 (654)
T PRK12769        503 EANMPG-SKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAV  576 (654)
T ss_pred             CCCCCC-CHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEE
Confidence            53 442 2222     3457788999999999999976556766555531         22           25999999


Q ss_pred             EEeeCCCCCh-hhhhcc-ccc-ccCcEEEec----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHH
Q 018320          134 VVGIGIRPNT-SLFEGQ-LTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  206 (358)
Q Consensus       134 i~a~G~~p~~-~l~~~~-~~~-~~g~i~vd~----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  206 (358)
                      |+|+|+.|++ .+++.. +.+ .+|.|.+|+    +++|+.|+|||+||++..+.          ++..|+.+|+.||.+
T Consensus       577 i~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~----------~vv~Ai~~Gr~AA~~  646 (654)
T PRK12769        577 IMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD----------LVVTAMAEGRHAAQG  646 (654)
T ss_pred             EECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc----------HHHHHHHHHHHHHHH
Confidence            9999999986 444443 555 568899985    58999999999999987643          467899999999999


Q ss_pred             HcC
Q 018320          207 IME  209 (358)
Q Consensus       207 i~g  209 (358)
                      |..
T Consensus       647 I~~  649 (654)
T PRK12769        647 IID  649 (654)
T ss_pred             HHH
Confidence            864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.81  E-value=1.1e-18  Score=174.73  Aligned_cols=194  Identities=22%  Similarity=0.317  Sum_probs=134.4

Q ss_pred             CCccCCCCCCCCCCeEEecC-HHHHHHHHH--HH-----hcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcc
Q 018320            6 KLEEFGLSGSDAENVCYLRD-LADANRLVN--VM-----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC   76 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~-~~da~~i~~--~l-----~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~   76 (358)
                      .|..++|||.+.++|++... +.+...+..  ..     ....+|+|+|||||++|+|+|..+.++|. +|+++++.+..
T Consensus       240 ~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~  319 (485)
T TIGR01317       240 KPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP  319 (485)
T ss_pred             CCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence            47778899999999997543 333322211  00     01257999999999999999888888775 79999988765


Q ss_pred             cCccC-C------H---HHHHHHHHHHHhCCCEE-EcCCeeeEEEEcCCCcEEEEEc--------CCCc-----------
Q 018320           77 MARLF-T------P---KIASYYEEYYKSKGVKF-VKGTVLSSFDVDSNGKVVAVNL--------RDGN-----------  126 (358)
Q Consensus        77 l~~~~-~------~---~~~~~~~~~l~~~gV~v-~~~~~v~~i~~~~~g~v~~v~~--------~~g~-----------  126 (358)
                      +.... +      +   ++....++..+..||++ ++++.+.+|..++++++..+++        .+|+           
T Consensus       320 ~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~  399 (485)
T TIGR01317       320 PEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE  399 (485)
T ss_pred             hhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence            43211 1      0   12222334444457654 5677888887644466655542        1332           


Q ss_pred             EEecCeEEEeeCCC-CChhhhhcc-ccc-ccCcEEE-eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHH
Q 018320          127 RLPTDMVVVGIGIR-PNTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH  202 (358)
Q Consensus       127 ~i~~D~vi~a~G~~-p~~~l~~~~-~~~-~~g~i~v-d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~  202 (358)
                      ++++|.||+++|.. |++.+++.. +.. .+|.+.+ |++++|+.|+|||+|||+..+          ..+..|+.+|+.
T Consensus       400 ~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~  469 (485)
T TIGR01317       400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRK  469 (485)
T ss_pred             EEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHH
Confidence            69999999999986 888877654 554 5677754 578999999999999998653          246679999999


Q ss_pred             HHHHHcC
Q 018320          203 AVAAIME  209 (358)
Q Consensus       203 aa~~i~g  209 (358)
                      ||.+|..
T Consensus       470 AA~~i~~  476 (485)
T TIGR01317       470 AAAAVDR  476 (485)
T ss_pred             HHHHHHH
Confidence            9999854

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.79  E-value=7.1e-18  Score=178.56  Aligned_cols=184  Identities=25%  Similarity=0.369  Sum_probs=130.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHH-hcCCCCcEEEEcCcHHHHHHHHHHHhC-CC-cEEEEeeCC-cccCccC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSGGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEA-HCMARLF   81 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l-~~~~~~~vvVIGgG~~gle~A~~L~~~-g~-~Vtlv~~~~-~~l~~~~   81 (358)
                      .|+.+++||.+ ++++  ..++....+.... ....+++|+|||||++|+|+|..+.+. |. +||++.+.. ..++. .
T Consensus       633 ~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~  708 (1012)
T TIGR03315       633 KHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-S  708 (1012)
T ss_pred             CCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-C
Confidence            34556778764 4554  2333333332210 012589999999999999999999886 75 799999876 34553 3


Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEE--------------EcCCC--cEEecCeEEEeeCCCCChhh
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV--------------NLRDG--NRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v--------------~~~~g--~~i~~D~vi~a~G~~p~~~l  145 (358)
                      ++++    .+. .+.||++++...+.+++   ++.+...              ...+|  .++++|.||+|+|.+|++++
T Consensus       709 ~eEl----~~a-leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l  780 (1012)
T TIGR03315       709 REEL----EEA-LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL  780 (1012)
T ss_pred             HHHH----HHH-HHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH
Confidence            4433    232 35799999998888886   1222111              11123  36899999999999999998


Q ss_pred             hhcc-ccc-ccCcEEEecc-ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          146 FEGQ-LTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       146 ~~~~-~~~-~~g~i~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      ++.. +.+ .+|.|.||++ ++|+.|+|||+|||+..+          ..+..|+.||+.||.+|++..
T Consensus       781 le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~  839 (1012)
T TIGR03315       781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSRE  839 (1012)
T ss_pred             HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhccc
Confidence            8654 555 5688999986 899999999999998654          346789999999999999754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.78  E-value=6.3e-18  Score=174.69  Aligned_cols=188  Identities=22%  Similarity=0.342  Sum_probs=135.1

Q ss_pred             CCccCCCCCCCCCCeEEecCH-----HHHHHHHHH----HhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc
Q 018320            6 KLEEFGLSGSDAENVCYLRDL-----ADANRLVNV----MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   75 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~-----~da~~i~~~----l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~   75 (358)
                      .|..+++||.+.+++++.-.+     .+...+...    +....+|+++|||+|.+|+++|..+.++|. +||++.+.+.
T Consensus       407 ~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        407 GMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            455678999998998862111     111111100    111257899999999999999999999995 7999998765


Q ss_pred             c-cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---C------CC-----------cEEecCeEE
Q 018320           76 C-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---R------DG-----------NRLPTDMVV  134 (358)
Q Consensus        76 ~-l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~------~g-----------~~i~~D~vi  134 (358)
                      . ++. .+.++     ..+++.||++++++.+++|..+++|++..+++   .      +|           .++++|.||
T Consensus       487 ~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi  560 (639)
T PRK12809        487 VSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLI  560 (639)
T ss_pred             ccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEE
Confidence            4 443 22222     23567899999999999998656676655432   1      12           368999999


Q ss_pred             EeeCCCCCh-hhhhcc-ccc-ccCcEEEec----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320          135 VGIGIRPNT-SLFEGQ-LTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       135 ~a~G~~p~~-~l~~~~-~~~-~~g~i~vd~----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  207 (358)
                      +|+|+.|+. .+++.. +.+ .+|.|.+|+    +++|+.|+|||+|||+..+.          ++..|+.+|+.||.+|
T Consensus       561 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~----------~vv~Ai~~Gr~AA~~i  630 (639)
T PRK12809        561 MAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD----------LVVTAMAAGRQAARDM  630 (639)
T ss_pred             ECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch----------HHHHHHHHHHHHHHHH
Confidence            999999975 444433 555 568899985    48999999999999987643          4678999999999998


Q ss_pred             cC
Q 018320          208 ME  209 (358)
Q Consensus       208 ~g  209 (358)
                      ..
T Consensus       631 ~~  632 (639)
T PRK12809        631 LT  632 (639)
T ss_pred             HH
Confidence            64

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.71  E-value=5.7e-16  Score=158.19  Aligned_cols=185  Identities=25%  Similarity=0.320  Sum_probs=131.6

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc-cCccCCHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-MARLFTPK   84 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~-l~~~~~~~   84 (358)
                      +..+.++|.+..+++..-.+..  ..........+++++|||+|..|++++..+.++| .+|+++.+.+.. ++. ...+
T Consensus       235 ~~~~~i~g~~~~gv~~~~~~l~--~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~  311 (564)
T PRK12771        235 GKRLPIPGEDAAGVLDAVDFLR--AVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEE  311 (564)
T ss_pred             CCcCCCCCCccCCcEEHHHHHH--HhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHH
Confidence            4456788887777764322111  1100001224789999999999999999999998 679999887642 332 2333


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE----EEEEc----CCC---------cEEecCeEEEeeCCCCChhhhh
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV----VAVNL----RDG---------NRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v----~~v~~----~~g---------~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                      +     +...+.||++++++.+.++..++++.+    ..++.    .+|         .++++|.||+|+|..|++.++.
T Consensus       312 ~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~  386 (564)
T PRK12771        312 I-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE  386 (564)
T ss_pred             H-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh
Confidence            2     234567999999999999976444432    12221    122         3799999999999999998876


Q ss_pred             c--ccccccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          148 G--QLTLEKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       148 ~--~~~~~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .  .+..++|.|.||+ +++|+.|+|||+|||+..+          .++..|+.||+.||.+|..
T Consensus       387 ~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~  441 (564)
T PRK12771        387 SVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDA  441 (564)
T ss_pred             hccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            4  2444678999998 7899999999999998754          3577899999999999853

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.71  E-value=4.6e-16  Score=167.70  Aligned_cols=173  Identities=18%  Similarity=0.174  Sum_probs=128.7

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccCccCCHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|+.+++||.+.++|++.....+..+   .....++++++|||+|++|+|+|..|++.|. .|+++++.+.+        
T Consensus       285 ~~r~~pipG~~~pgV~~~~~~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------  353 (985)
T TIGR01372       285 HERPLVFANNDRPGVMLAGAARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------  353 (985)
T ss_pred             CCcCCCCCCCCCCCcEEchHHHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------
Confidence            45667899999999997655443322   1111257999999999999999999999996 57888876543        


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC----CCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEE
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR----DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKV  159 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~v  159 (358)
                       ...+.+.|++.||++++++.+++++.  ++.+..+++.    ++++++||.|++++|.+||++++... ...     ..
T Consensus       354 -~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~-----~~  425 (985)
T TIGR01372       354 -SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKL-----AW  425 (985)
T ss_pred             -hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCe-----ee
Confidence             22355678899999999999999974  3444445543    45789999999999999999988643 221     11


Q ss_pred             ecc-----ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          160 TGR-----LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       160 d~~-----~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      |+.     -.|+.|+||++|||+...           .+..|..+|+.||..++
T Consensus       426 ~~~~~~~~~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       426 DAAIAAFLPGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             ccccCceecCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence            211     137899999999998653           35679999999998875

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.70  E-value=4.5e-16  Score=154.74  Aligned_cols=193  Identities=24%  Similarity=0.347  Sum_probs=131.6

Q ss_pred             CccCCCCCCCCCCeEEecCHH-------HHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC----------------
Q 018320            7 LEEFGLSGSDAENVCYLRDLA-------DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----------------   63 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~-------da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~----------------   63 (358)
                      ++.++|||.+.++||+.+++-       ++..+...+  ..+++|+|||+|++|+|+|..|.+.                
T Consensus       127 ~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~  204 (491)
T PLN02852        127 DRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEA  204 (491)
T ss_pred             CCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHH
Confidence            456789999999999765542       221121111  1478999999999999999999875                


Q ss_pred             ----CC-cEEEEeeCCcccCccCCHHH-------------------------------------HHHHHHHHHh------
Q 018320           64 ----KI-NVTMVFPEAHCMARLFTPKI-------------------------------------ASYYEEYYKS------   95 (358)
Q Consensus        64 ----g~-~Vtlv~~~~~~l~~~~~~~~-------------------------------------~~~~~~~l~~------   95 (358)
                          |. +|+++.|+...-..+-..++                                     .+.+.+...+      
T Consensus       205 l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~  284 (491)
T PLN02852        205 LRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPS  284 (491)
T ss_pred             HhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccC
Confidence                65 59999887532111111111                                     1122222222      


Q ss_pred             ---CCCEEEcCCeeeEEEEc--CCCcEEEEEcC-----------------CC--cEEecCeEEEeeCCC--CChhh-hhc
Q 018320           96 ---KGVKFVKGTVLSSFDVD--SNGKVVAVNLR-----------------DG--NRLPTDMVVVGIGIR--PNTSL-FEG  148 (358)
Q Consensus        96 ---~gV~v~~~~~v~~i~~~--~~g~v~~v~~~-----------------~g--~~i~~D~vi~a~G~~--p~~~l-~~~  148 (358)
                         ++|.|++....++|..+  +++++..+++.                 +|  ++++||.||.++|++  |.+.+ +..
T Consensus       285 ~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~  364 (491)
T PLN02852        285 GGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDH  364 (491)
T ss_pred             CCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcccc
Confidence               57999999999999742  23566666552                 12  258999999999998  66553 322


Q ss_pred             --ccc-cccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          149 --QLT-LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       149 --~~~-~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                        .+. ..+|.|.+|+.++|+.|+|||+|||...+.         ..+..++.+|+.++.+|+..
T Consensus       365 ~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~---------gvI~t~~~dA~~ta~~i~~d  420 (491)
T PLN02852        365 KRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT---------GIIGTNLTCAEETVASIAED  420 (491)
T ss_pred             CcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC---------CeeeecHhhHHHHHHHHHHH
Confidence              233 367999999888999999999999998664         34667788888888888753

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=4.8e-16  Score=143.19  Aligned_cols=158  Identities=28%  Similarity=0.448  Sum_probs=120.6

Q ss_pred             cCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            9 EFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         9 ~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      .+.+||.+   .++|-++-..+.-     .   .++|+|+|||||.+|+|.|..|+-.-..||+++-.+.+-.       
T Consensus       327 n~nvPGE~e~rnKGVayCPHCDGP-----L---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA-------  391 (520)
T COG3634         327 NMNVPGEDEYRNKGVAYCPHCDGP-----L---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA-------  391 (520)
T ss_pred             cCCCCchHHHhhCCeeeCCCCCCc-----c---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------
Confidence            45677753   3555544332211     0   1689999999999999999999988889999986654322       


Q ss_pred             HHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeCCCCChhhhhccccc-ccCcEE
Q 018320           86 ASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIK  158 (358)
Q Consensus        86 ~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~  158 (358)
                      -+.+++.|++ .+|+++++...++|..++ .++..+...|   |  ..++-+-|++-+|..||++|++..+++ ..|.|.
T Consensus       392 D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIi  470 (520)
T COG3634         392 DAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEII  470 (520)
T ss_pred             HHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEE
Confidence            2445666665 589999999999998532 3444454433   3  347788999999999999999998887 789999


Q ss_pred             EeccccCCCCcEEEEccccccccc
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLK  182 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~  182 (358)
                      ||.+..||+|+|||+|||+..+..
T Consensus       471 vD~~g~TsvpGvFAAGD~T~~~yK  494 (520)
T COG3634         471 VDARGETNVPGVFAAGDCTTVPYK  494 (520)
T ss_pred             EecCCCcCCCceeecCcccCCccc
Confidence            999999999999999999987653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.63  E-value=3.4e-15  Score=112.65  Aligned_cols=80  Identities=36%  Similarity=0.592  Sum_probs=74.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  122 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~  122 (358)
                      |++|||||++|+|+|..|+++|.+||++++.+.+++ .+++++.+.+.+.|+++||++++++.+++++.++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            689999999999999999999999999999999995 499999999999999999999999999999987777 65 888


Q ss_pred             CCC
Q 018320          123 RDG  125 (358)
Q Consensus       123 ~~g  125 (358)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.58  E-value=4.5e-15  Score=131.01  Aligned_cols=137  Identities=28%  Similarity=0.399  Sum_probs=97.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--ccCCH-----------HHH--H--HHHHHHHhCCCEEEcCCe
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--RLFTP-----------KIA--S--YYEEYYKSKGVKFVKGTV  105 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~gV~v~~~~~  105 (358)
                      +|+|||||+.|+.+|..|++.+.+|+++++.+....  ..+..           ...  +  .+.+.+...+++++.+++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999987653210  00000           011  1  334445678999999999


Q ss_pred             eeEEEEcCCCc-------EEEEEcCCCcEEecCeEEEeeCCCCChhh-------------------h-------------
Q 018320          106 LSSFDVDSNGK-------VVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------------------F-------------  146 (358)
Q Consensus       106 v~~i~~~~~g~-------v~~v~~~~g~~i~~D~vi~a~G~~p~~~l-------------------~-------------  146 (358)
                      +.+++. ..+.       +......++.++++|.+|+|+|.+|+...                   .             
T Consensus        81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  159 (201)
T PF07992_consen   81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG  159 (201)
T ss_dssp             EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred             cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence            999986 3332       22234556778999999999998755220                   0             


Q ss_pred             -----hc-cccc-ccCcEEEeccccCCCCcEEEEccccccc
Q 018320          147 -----EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP  180 (358)
Q Consensus       147 -----~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~  180 (358)
                           +. .+++ ++|+|.||+++||+.|+|||+|||+..+
T Consensus       160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             ccccccccccccccccccccccccccccccccccccccccC
Confidence                 00 1334 5788999999999999999999999865

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2e-14  Score=125.31  Aligned_cols=133  Identities=27%  Similarity=0.318  Sum_probs=106.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH-HHHHhCCCEEEcCCeeeEEEEcCCCc--
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGK--  116 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~-~~l~~~gV~v~~~~~v~~i~~~~~g~--  116 (358)
                      ++|-.+|||||.+++|-|..|.+.+.+|.+++|.+++-.       +..++ +.++..+|++++++.+.+...+ .+.  
T Consensus       156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~  227 (322)
T KOG0404|consen  156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLN  227 (322)
T ss_pred             cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHhcCCCeEEEechhhhhhccC-ccccc
Confidence            578899999999999999999999999999999987543       22333 3445678999999988877643 122  


Q ss_pred             ---EEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEe-ccccCCCCcEEEEccccccc
Q 018320          117 ---VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFP  180 (358)
Q Consensus       117 ---v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd-~~~~t~~~~VyAiGD~~~~~  180 (358)
                         +..+...+-+.++.+-++.++|..|++.+++..+++ ++|+|++- ..-.||+|++||+||+....
T Consensus       228 ~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k  296 (322)
T KOG0404|consen  228 GLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK  296 (322)
T ss_pred             ceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence               223333444679999999999999999999998888 78888887 56778999999999998753

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.37  E-value=2.2e-12  Score=127.30  Aligned_cols=195  Identities=26%  Similarity=0.294  Sum_probs=136.2

Q ss_pred             CCCCCccCCCCCCCCCCeEEecCHHHHHHHHHHH-----hc--CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320            3 MALKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----KS--CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus         3 ~~~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l-----~~--~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      ...+|+.+++||.++++|+.--++--........     ..  .++|+++|||+|.++++++....+.|+ +|+.+.+..
T Consensus       217 G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~  296 (457)
T COG0493         217 GAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRED  296 (457)
T ss_pred             cccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccc
Confidence            3568999999999999998422211111111111     00  034999999999999999999999998 688775322


Q ss_pred             cc--cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-------------------C--cEEecC
Q 018320           75 HC--MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------------------G--NRLPTD  131 (358)
Q Consensus        75 ~~--l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-------------------g--~~i~~D  131 (358)
                      .-  ... .+........+....+|+.+.+.....++..+++|++..+.+..                   |  ..+++|
T Consensus       297 ~~~~~~~-~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD  375 (457)
T COG0493         297 RDDETNE-WPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAAD  375 (457)
T ss_pred             ccccCCc-ccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHH
Confidence            11  110 11122344456667789999999999999887888776553321                   2  257899


Q ss_pred             eEEEeeCCCCChhhh---hccccc-ccCcEEEeccc-cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHH
Q 018320          132 MVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL-QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  206 (358)
Q Consensus       132 ~vi~a~G~~p~~~l~---~~~~~~-~~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  206 (358)
                      +|+.++|+.++....   ...+.. ..|.|.+|+.+ +|+.|++||.||+....          .++..|+.+|+.+|+.
T Consensus       376 ~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~  445 (457)
T COG0493         376 TVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKA  445 (457)
T ss_pred             HHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHh
Confidence            999999988875432   113444 67999999998 99999999999999864          3566789999999987


Q ss_pred             Hc
Q 018320          207 IM  208 (358)
Q Consensus       207 i~  208 (358)
                      |.
T Consensus       446 i~  447 (457)
T COG0493         446 ID  447 (457)
T ss_pred             hh
Confidence            64

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.32  E-value=8.3e-12  Score=111.45  Aligned_cols=169  Identities=26%  Similarity=0.384  Sum_probs=119.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+. ..+|.+ +.|..+|+.+.+..++..+.  +.|.|.|+|.|-+++|++..+.  +.+|++....+.+...+|+|.+
T Consensus       103 kPkl-q~E~~n-~~Iv~irDtDsaQllq~kl~--kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGa  176 (334)
T KOG2755|consen  103 KPKL-QVEGIN-PKIVGIRDTDSAQLLQCKLV--KAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGA  176 (334)
T ss_pred             Ccce-eecCCC-ceEEEEecCcHHHHHHHHHh--hcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccH
Confidence            4553 345533 67888999999999998887  6899999999999999998884  6799999999999999999998


Q ss_pred             HHHHHHHHHhC------------CCEEEcCC-----------------eeeEE-------------------EEcCCCcE
Q 018320           86 ASYYEEYYKSK------------GVKFVKGT-----------------VLSSF-------------------DVDSNGKV  117 (358)
Q Consensus        86 ~~~~~~~l~~~------------gV~v~~~~-----------------~v~~i-------------------~~~~~g~v  117 (358)
                      .+.+...|+..            .++..+++                 ....+                   .+.+.+.+
T Consensus       177 aef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv  256 (334)
T KOG2755|consen  177 AEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSV  256 (334)
T ss_pred             HHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccc
Confidence            88887666211            11111110                 00000                   00001111


Q ss_pred             EEEEcCCC--cEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccccCCCCcEEEEccccccc
Q 018320          118 VAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP  180 (358)
Q Consensus       118 ~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~  180 (358)
                      ......++  ..+.||.++.++|+.||.++.-.. +.. ++++++||+.|+|+.|++||+||++...
T Consensus       257 ~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~  323 (334)
T KOG2755|consen  257 HYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT  323 (334)
T ss_pred             ccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccC
Confidence            11111111  357799999999999999965433 555 8999999999999999999999998743

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.31  E-value=3.9e-11  Score=117.74  Aligned_cols=159  Identities=18%  Similarity=0.162  Sum_probs=116.6

Q ss_pred             EEEEcCcHHHHHHH-HHHH----hCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           44 AVVIGGGYIGMECA-ASLV----INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        44 vvVIGgG~~gle~A-~~L~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      =+|++.+.+|+|.+ ..++    +.|.+|++++..+..++.   .++.+.+.+.+++.|++++++++|++++.+ ++.+.
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~  293 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT  293 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence            36788899999999 6665    469999999999888875   378889999999999999999999999863 45555


Q ss_pred             EEEcCCC--cEEecCeEEEeeCCCCChhhhh------cc-----c------------------ccccCcEEEeccccC--
Q 018320          119 AVNLRDG--NRLPTDMVVVGIGIRPNTSLFE------GQ-----L------------------TLEKGGIKVTGRLQS--  165 (358)
Q Consensus       119 ~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~------~~-----~------------------~~~~g~i~vd~~~~t--  165 (358)
                      .+...++  ..+++|.+|+|+|+.+...+..      +.     +                  .+..-+|.+|++++.  
T Consensus       294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~  373 (422)
T PRK05329        294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD  373 (422)
T ss_pred             EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence            5554455  3589999999999876654410      00     0                  001234667766663  


Q ss_pred             -----CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          166 -----SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       166 -----~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                           ..+|+||+|++...+++....    .....|+..|..|+++|+..
T Consensus       374 ~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        374 SQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE  419 (422)
T ss_pred             CCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence                 579999999999988764211    12346788888888888643

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.22  E-value=1.2e-10  Score=116.08  Aligned_cols=171  Identities=11%  Similarity=0.077  Sum_probs=113.1

Q ss_pred             CCCCCCccCCCCCCC-CCCe-EEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320            2 NMALKLEEFGLSGSD-AENV-CYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus         2 ~~~~~P~~~~ipG~~-~~~v-~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      |.-.+|+.++|||.+ .++. .+..++.+...       .++|+|+|||+|.+|+|+|..|++.+.+|+++.|...+...
T Consensus       170 G~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~  242 (461)
T PLN02172        170 GHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTY  242 (461)
T ss_pred             cCCCCCcCCCCCCcccCCceEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccccc
Confidence            444567777788864 2331 22222222211       26899999999999999999999999999999987643110


Q ss_pred             cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEE
Q 018320           80 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV  159 (358)
Q Consensus        80 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~v  159 (358)
                                 ..+......+..+..|..+.  +++   .|.+.||+.+++|.||+|||++|+.+++...     +.|.+
T Consensus       243 -----------~~~~~~~~~v~~~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~-----~~i~v  301 (461)
T PLN02172        243 -----------EKLPVPQNNLWMHSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETN-----GYMRI  301 (461)
T ss_pred             -----------ccCcCCCCceEECCccccee--cCC---eEEECCCCCccCCEEEECCcCCccccccCcc-----cceee
Confidence                       01111223445566676664  334   3778999999999999999999999987642     23333


Q ss_pred             eccc------c---CC-CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          160 TGRL------Q---SS-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       160 d~~~------~---t~-~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      |+..      .   .. .|+++.+|=....           .....+..|++.+|..+.|..
T Consensus       302 ~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        302 DENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             CCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence            3211      1   12 4899999965322           223457789999999988764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.14  E-value=1.1e-09  Score=102.37  Aligned_cols=99  Identities=14%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc---c--------cCc----cCCHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      +++|||||+.|+++|..|++.|.+|+++++.+.   +        .|.    ..+.++...+.+.+++.|+++++ ++++
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            699999999999999999999999999998651   1        121    12367888888889999999998 8899


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +++.+++.  ..+.+.++.++.+|.+|+|+|.+|+..
T Consensus        81 ~v~~~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDLSDRP--FKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEecCCe--eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            99863322  356677788999999999999988754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.08  E-value=1.7e-10  Score=119.53  Aligned_cols=192  Identities=19%  Similarity=0.288  Sum_probs=113.4

Q ss_pred             CCCCCccCCCCCCCCCCeEEecCHHHHHHHHHHHh--------cCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeC
Q 018320            3 MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK--------SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPE   73 (358)
Q Consensus         3 ~~~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~--------~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~   73 (358)
                      .+..|+++++||.|+++|+.--.+-+.. -+..+.        +.++|+|+|||||..|-+|-..-.++|++ |.-++--
T Consensus      1879 gst~prdlpv~grd~kgv~fame~l~~n-tk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ell 1957 (2142)
T KOG0399|consen 1879 GSTTPRDLPVPGRDLKGVHFAMEFLEKN-TKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELL 1957 (2142)
T ss_pred             CCCCCcCCCCCCccccccHHHHHHHHHh-HHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeec
Confidence            3578999999999999997432221111 111221        12689999999999999999999999985 4334433


Q ss_pred             Ccc---------c---CccCCHHHHHH-HHHHHHhCCCEEE-----------------cCCeeeEE--EEcCCCcEEEEE
Q 018320           74 AHC---------M---ARLFTPKIASY-YEEYYKSKGVKFV-----------------KGTVLSSF--DVDSNGKVVAVN  121 (358)
Q Consensus        74 ~~~---------l---~~~~~~~~~~~-~~~~l~~~gV~v~-----------------~~~~v~~i--~~~~~g~v~~v~  121 (358)
                      |++         +   |+.|--+.... ..+.   .|-+.+                 ++-+..++  ++++.|+..-++
T Consensus      1958 p~pp~~ra~~npwpqwprvfrvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e 2034 (2142)
T KOG0399|consen 1958 PQPPPERAPDNPWPQWPRVFRVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE 2034 (2142)
T ss_pred             CCCCcccCCCCCCccCceEEEeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE
Confidence            322         1   11111111111 1111   111111                 11122222  233344433333


Q ss_pred             cCCC-cEEecCeEEEeeCCC-CChhhhhcc-ccc-ccCcEEE-eccccCCCCcEEEEcccccccccccCcccccccHHHH
Q 018320          122 LRDG-NRLPTDMVVVGIGIR-PNTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA  196 (358)
Q Consensus       122 ~~~g-~~i~~D~vi~a~G~~-p~~~l~~~~-~~~-~~g~i~v-d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A  196 (358)
                      ..+. +.++||+||+|.|+. |.....+.. ++. .++.|.. ++.+.|++++|||+|||-.....          +-.|
T Consensus      2035 i~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqsl----------vvwa 2104 (2142)
T KOG0399|consen 2035 INNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSL----------VVWA 2104 (2142)
T ss_pred             cCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceE----------EEEE
Confidence            3332 468999999999976 444444433 444 4555655 46688999999999999887643          3346


Q ss_pred             HHHHHHHHHHHc
Q 018320          197 RKSAKHAVAAIM  208 (358)
Q Consensus       197 ~~~g~~aa~~i~  208 (358)
                      +++||.+|+.+-
T Consensus      2105 i~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2105 IQEGRQAARQVD 2116 (2142)
T ss_pred             ehhhhHHHHHHH
Confidence            788888887753

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.04  E-value=5.7e-09  Score=109.98  Aligned_cols=170  Identities=20%  Similarity=0.175  Sum_probs=106.0

Q ss_pred             CCCccCCCCCCCCCCeEEecCHHHHHHHHHHH-----h-cCCCCcEEEEcCcHHHHHHHHHHHh----------------
Q 018320            5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----K-SCSGGNAVVIGGGYIGMECAASLVI----------------   62 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l-----~-~~~~~~vvVIGgG~~gle~A~~L~~----------------   62 (358)
                      .+|+.++|||.+.++|++..++-...+.....     . ...+++|||||||++|+|+|.....                
T Consensus       508 ~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~  587 (1028)
T PRK06567        508 GQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEK  587 (1028)
T ss_pred             CCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhh
Confidence            46888899999988998533311111100000     0 0025899999999999999984332                


Q ss_pred             -----------------------------------CCCcEEEEeeCCcc-cCcc-CCHHHHHHHHHHHHhCCCEEEcCCe
Q 018320           63 -----------------------------------NKINVTMVFPEAHC-MARL-FTPKIASYYEEYYKSKGVKFVKGTV  105 (358)
Q Consensus        63 -----------------------------------~g~~Vtlv~~~~~~-l~~~-~~~~~~~~~~~~l~~~gV~v~~~~~  105 (358)
                                                         .|. ||++.|...- +|.. ++.   +.+++ ..+.||+|+....
T Consensus       588 ~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~---eEv~~-A~eEGV~f~~~~~  662 (1028)
T PRK06567        588 DLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNH---EELIY-ALALGVDFKENMQ  662 (1028)
T ss_pred             hcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCH---HHHHH-HHHcCcEEEecCC
Confidence                                               232 8888776432 2220 011   22222 3456999999999


Q ss_pred             eeEEEEcCCCcEEEEEcC--------------C-C---------------cEEecCeEEEeeCCCCChhhhhcccccccC
Q 018320          106 LSSFDVDSNGKVVAVNLR--------------D-G---------------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKG  155 (358)
Q Consensus       106 v~~i~~~~~g~v~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g  155 (358)
                      ..+|..+++|.+..+++.              + +               .+++||.||+|+|..||+.+...       
T Consensus       663 P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~-------  735 (1028)
T PRK06567        663 PLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED-------  735 (1028)
T ss_pred             cEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc-------
Confidence            999987666777655442              1 1               46899999999999999987421       


Q ss_pred             cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                          +..+-++.+++|+-                  .+-.|+.+|+.++.+|.
T Consensus       736 ----~~s~~~d~~~~f~G------------------tvv~A~as~k~~~~~i~  766 (1028)
T PRK06567        736 ----KYSYFGDCNPKYSG------------------SVVKALASSKEGYDAIN  766 (1028)
T ss_pred             ----ccccccCCCCcccc------------------HHHHHHHHHHhHHHHHH
Confidence                01122334444443                  34568888888888873

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.98  E-value=2.8e-08  Score=91.60  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------c--------------------------C-CH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------L--------------------------F-TP   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------~--------------------------~-~~   83 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+...          .                          . ..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            468999999999999999999999999999987654210          0                          0 12


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CCcEEecCeEEEeeCCCCChh--hhhccc
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS--LFEGQL  150 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~--l~~~~~  150 (358)
                      ++...+.+...+.|++++.++.+.++..++++++..+...           +..++.++.||.|+|......  +.+...
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~  184 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP  184 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence            3445556666778999999999999876444455554432           224799999999999654432  111100


Q ss_pred             ----cc--------ccCc-EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          151 ----TL--------EKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       151 ----~~--------~~g~-i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                          ..        +.+. ..|+.. +--.|++|++|-++...   +|.++.-|.-..=...|+.||+.|+..
T Consensus       185 ~~~~~~~g~~~~~~~~~e~~v~~~t-~~~~~g~~~~gm~~~~~---~~~~rmg~~fg~m~~sg~~~a~~~~~~  253 (257)
T PRK04176        185 ELGIEVPGEKSMWAERGEKLVVENT-GEVYPGLYVAGMAANAV---HGLPRMGPIFGGMLLSGKKVAELILEK  253 (257)
T ss_pred             CcccccCCccccccCchHHHHHhcC-CeEcCCEEEeehhhhhh---cCCCccCchhHhHHHhHHHHHHHHHHH
Confidence                00        1111 111111 11379999999988753   355555555554456788888877643

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.98  E-value=6.7e-09  Score=98.77  Aligned_cols=100  Identities=19%  Similarity=0.283  Sum_probs=81.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------   79 (358)
                      ..|+|||||+.|+-+|..+++.|.+|+|+++.+.+..+                                          
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            57999999999999999999999999999997654211                                          


Q ss_pred             -------------------cC-----CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320           80 -------------------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        80 -------------------~~-----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                                         .|     ..++.+.+.+.+++.||+++++++|.+++.++  ....+.+.+|+++.||.+|+
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence                               11     12366777888999999999999999999744  33678888999999999999


Q ss_pred             eeC--CCCCh
Q 018320          136 GIG--IRPNT  143 (358)
Q Consensus       136 a~G--~~p~~  143 (358)
                      |+|  .-|.+
T Consensus       162 AtGG~S~P~l  171 (408)
T COG2081         162 ATGGKSWPKL  171 (408)
T ss_pred             ecCCcCCCCC
Confidence            999  44533

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.91  E-value=1.3e-07  Score=87.02  Aligned_cols=166  Identities=17%  Similarity=0.184  Sum_probs=108.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------c---------------------------CCH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------L---------------------------FTP   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------~---------------------------~~~   83 (358)
                      .-+|+|||||++|+-+|..|++.|.+|+++|+.+.+...          .                           ...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            468999999999999999999999999999997654110          0                           012


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC-cEEEEEcC-----------CCcEEecCeEEEeeCCCCCh-hhhhcc-
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT-SLFEGQ-  149 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g-~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~-~l~~~~-  149 (358)
                      ++.+.+.+...+.|++++.++.++++..++++ ++..+...           +..+++++.||.|+|..... .++... 
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            34455556667889999999999998764432 56665543           23478999999999965443 333221 


Q ss_pred             -ccccc------CcEEEe-------ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          150 -LTLEK------GGIKVT-------GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       150 -~~~~~------g~i~vd-------~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                       +....      +....+       ++-+--.|++|++|-.+...   .|.++.-|.-..=...|+.||+.|+.
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~---~~~~rmgp~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAV---HGLPRMGPIFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhh---cCCCCcCchHHHHHHhhHHHHHHHHH
Confidence             11100      011111       01111479999999988743   45555555555445678888887753

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.89  E-value=3.8e-08  Score=99.75  Aligned_cols=102  Identities=20%  Similarity=0.272  Sum_probs=81.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--Cccc-----------CccCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      ...+|+|||||+.|+.+|..|++.|.+|++++..  .++.           +....+++.+.+.+.+++.||+++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            4578999999999999999999999999999642  1111           11234677888888899999999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ++++.+++.  ..+.+.+|..+.+|.+|+|+|.+|..
T Consensus       291 ~~I~~~~~~--~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       291 KKIETEDGL--IVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEEecCCe--EEEEECCCCEEEeCEEEECCCCCcCC
Confidence            999763322  35667788899999999999998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.89  E-value=4.5e-08  Score=99.26  Aligned_cols=101  Identities=23%  Similarity=0.303  Sum_probs=81.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--Ccc-----------cCccCCHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      ..+++|||||+.|+.+|..|++.|.+|++++..  .++           .+....+++.+.+.+.+++.|++++.+++++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            458999999999999999999999999999753  111           1112346788888999999999999999999


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ++...++  ...+.+.+|.++.+|.||+|+|.+|..
T Consensus       291 ~I~~~~~--~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAAG--LIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecCC--eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9986332  245667788899999999999998754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.85  E-value=1.2e-08  Score=103.29  Aligned_cols=184  Identities=16%  Similarity=0.242  Sum_probs=93.9

Q ss_pred             CCCCCccC--CCCCCCC--CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-c
Q 018320            3 MALKLEEF--GLSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-M   77 (358)
Q Consensus         3 ~~~~P~~~--~ipG~~~--~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-l   77 (358)
                      .-.+|+.+  .+||.+.  ..+++-++..+...+       ++|+|+|||+|.+|+++|..|++...+|++..|.... +
T Consensus       148 ~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~  220 (531)
T PF00743_consen  148 HFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVL  220 (531)
T ss_dssp             SSSCESB-----CTGGGHCSEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------
T ss_pred             CcCCCCCChhhhhhhhcCCeeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccc
Confidence            33445544  3788642  234554444444332       6899999999999999999999999999999886432 2


Q ss_pred             CccCC----------------------HHHHHHH-HHHH--------------------------------HhCCCEEEc
Q 018320           78 ARLFT----------------------PKIASYY-EEYY--------------------------------KSKGVKFVK  102 (358)
Q Consensus        78 ~~~~~----------------------~~~~~~~-~~~l--------------------------------~~~gV~v~~  102 (358)
                      ++..+                      ..+...+ ++.+                                ....|++. 
T Consensus       221 pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk-  299 (531)
T PF00743_consen  221 PRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK-  299 (531)
T ss_dssp             ------------------------------------------------------------------------------E-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            22110                      0011111 0111                                11112222 


Q ss_pred             CCeeeEEEEcCCCcEEEEEcCCCcEE-ecCeEEEeeCCCCChhhhhccc-ccccCcEEEecccc---CCCCcEEEEcccc
Q 018320          103 GTVLSSFDVDSNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTSLFEGQL-TLEKGGIKVTGRLQ---SSNSSVYAVGDVA  177 (358)
Q Consensus       103 ~~~v~~i~~~~~g~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~l~~~~~-~~~~g~i~vd~~~~---t~~~~VyAiGD~~  177 (358)
                       ..|.++..      ..+.+.||+++ ++|.||+|||++....+++..+ ...++.+..-.++-   -..|.+..+|=+-
T Consensus       300 -~~I~~~~~------~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~  372 (531)
T PF00743_consen  300 -PDIKRFTE------NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQ  372 (531)
T ss_dssp             -E-EEEE-S------SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SB
T ss_pred             -cccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             12334431      14678899875 6999999999999888887653 33444433333321   1458899999764


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          178 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       178 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      ...          +....+..|++.++.-+.|..
T Consensus       373 ~~g----------~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  373 PFG----------SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             SSS-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             ccc----------ccccccccccccccccccccc
Confidence            321          234467889999999887764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.83  E-value=2.6e-08  Score=97.65  Aligned_cols=99  Identities=15%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCccc--CccCCHHHH---------HHHHHHHHhCCCEEEcCCeee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM--ARLFTPKIA---------SYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l--~~~~~~~~~---------~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      .+++||||||+.|+++|..|++.|.  +||++++.+.+.  ...+.....         ..-.+.+.+.||+++.++.|+
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            5789999999999999999999876  799998875431  001222110         001344677899999999999


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      .++. ++   ..+.+.+|+++.+|.+|+|||.+|..
T Consensus        83 ~id~-~~---~~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGR-DT---RELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEEC-CC---CEEEECCCCEEEcCEEEEccCCCCCC
Confidence            9975 22   24667788899999999999999854

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.80  E-value=1.4e-07  Score=94.13  Aligned_cols=136  Identities=21%  Similarity=0.268  Sum_probs=90.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc---------------------------------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---------------------------------------   80 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~---------------------------------------   80 (358)
                      ..++|+|||||++|+-+|..|.+.|.+|+++|+.+.+....                                       
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            36899999999999999999999999999999865331100                                       


Q ss_pred             ----C----------------CHHHHHHHHHHHHhCCCE--EEcCCeeeEEEEcCCCcEEEEEcCC--Cc--EEecCeEE
Q 018320           81 ----F----------------TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD--GN--RLPTDMVV  134 (358)
Q Consensus        81 ----~----------------~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~g~v~~v~~~~--g~--~i~~D~vi  134 (358)
                          +                ..++.+++++..++.|+.  +.++++|++++..+ ++ ..|++.+  +.  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcCCCceEEEEcCEEE
Confidence                0                035667777777888988  88999999998743 32 2344432  22  46799999


Q ss_pred             EeeC--CCCChhhhhcccccccCcEEEeccccC----CCCcEEEEccccc
Q 018320          135 VGIG--IRPNTSLFEGQLTLEKGGIKVTGRLQS----SNSSVYAVGDVAA  178 (358)
Q Consensus       135 ~a~G--~~p~~~l~~~~~~~~~g~i~vd~~~~t----~~~~VyAiGD~~~  178 (358)
                      +|+|  ..|+..-+...-...+..+... .+++    ..++|.++|-..+
T Consensus       167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~-~yr~~~~~~gk~VvVVG~G~S  215 (461)
T PLN02172        167 VCNGHYTEPNVAHIPGIKSWPGKQIHSH-NYRVPDPFKNEVVVVIGNFAS  215 (461)
T ss_pred             EeccCCCCCcCCCCCCcccCCceEEEec-ccCCccccCCCEEEEECCCcC
Confidence            9999  5666543332211222222222 2332    3567888886544

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.80  E-value=4.6e-08  Score=86.37  Aligned_cols=98  Identities=29%  Similarity=0.453  Sum_probs=67.7

Q ss_pred             EEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCccc--------------Ccc------------C----------------
Q 018320           45 VVIGGGYIGMECAASLVINKIN-VTMVFPEAHCM--------------ARL------------F----------------   81 (358)
Q Consensus        45 vVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~l--------------~~~------------~----------------   81 (358)
                      +|||||+.|+.+|..|.+.|.+ |+|+|+.+.+.              +..            +                
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 99999974431              000            0                


Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC--CCChh
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS  144 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~  144 (358)
                      .+++.+++++..++.+++++++++|++++.++++  ..+++.+++++.||.||+|+|.  .|+..
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence            1235577778888899999999999999986666  5688888889999999999996  55544

...

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.79  E-value=3.5e-08  Score=96.70  Aligned_cols=99  Identities=20%  Similarity=0.326  Sum_probs=66.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------c-------C----
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------L-------F----   81 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------~-------~----   81 (358)
                      +|+|||||++|+-+|..+++.|.+|+|+|+.+++..+                              +       +    
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            6899999999999999999999999999997544100                              0       0    


Q ss_pred             --------------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320           82 --------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        82 --------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                                                ..++.+.+.+.+++.||+++++++|.+++.+ ++.+..+++.++.++.+|.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence                                      1235566777888899999999999999873 4455667777788999999999


Q ss_pred             eeCCCCC
Q 018320          136 GIGIRPN  142 (358)
Q Consensus       136 a~G~~p~  142 (358)
                      |+|..+.
T Consensus       161 AtGG~S~  167 (409)
T PF03486_consen  161 ATGGKSY  167 (409)
T ss_dssp             ----SSS
T ss_pred             ecCCCCc
Confidence            9996543

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06847 hypothetical protein; Provisional

Probab=98.78  E-value=8.5e-08  Score=92.94  Aligned_cols=102  Identities=24%  Similarity=0.370  Sum_probs=79.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------   79 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------   79 (358)
                      +.++|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                                        
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g   82 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG   82 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence            3578999999999999999999999999999986531000                                        


Q ss_pred             ----cC-----------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320           80 ----LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        80 ----~~-----------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  138 (358)
                          .+                 .+++.+.+.+.+.+.|++++.++++++++.++++  ..+.+.+|+++.+|.||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG  160 (375)
T PRK06847         83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADG  160 (375)
T ss_pred             CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcC
Confidence                00                 0234556666777789999999999999864333  457778899999999999999


Q ss_pred             CCCCh
Q 018320          139 IRPNT  143 (358)
Q Consensus       139 ~~p~~  143 (358)
                      ..+..
T Consensus       161 ~~s~~  165 (375)
T PRK06847        161 LYSKV  165 (375)
T ss_pred             CCcch
Confidence            87765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.78  E-value=4.4e-08  Score=97.32  Aligned_cols=101  Identities=19%  Similarity=0.302  Sum_probs=72.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcc------cCcc----CC--HHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC------MARL----FT--PKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~------l~~~----~~--~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      +++||||||+.|+++|..|++++  .+|||+++.+.+      ++..    .+  .++.....+.+++.||+++.++.|+
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            47999999999999999999875  489999998753      1111    11  1223333466788899999999999


Q ss_pred             EEEEcCCCcEEEEEc-CCCcEEe--cCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVNL-RDGNRLP--TDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~-~~g~~i~--~D~vi~a~G~~p~~~  144 (358)
                      +++.+ +.. ..+.. .+++++.  +|.+|+|+|.+|+..
T Consensus        81 ~id~~-~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDAK-NKT-ITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEECC-CCE-EEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            99763 222 23332 2356666  999999999998754

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=98.68  E-value=1.3e-08  Score=81.38  Aligned_cols=82  Identities=21%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             EEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHH
Q 018320          223 YSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKA  281 (358)
Q Consensus       223 ~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~a  281 (358)
                      +..++++.++++|+++.++...+                  ..+..+|.|+..  ++|+|||+|++|+++.+ ++.++.+
T Consensus         3 ~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~a   82 (110)
T PF02852_consen    3 TVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELALA   82 (110)
T ss_dssp             EEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHH
T ss_pred             EEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHH
Confidence            35678999999999986532111                  112234666654  58999999999988665 5788999


Q ss_pred             HHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          282 TRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       282 i~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      |++++|++++.. .   +.|+|+|++.
T Consensus        83 i~~~~t~~~l~~-~---~~~~Pt~se~  105 (110)
T PF02852_consen   83 IQNGLTVEDLAD-D---IFYHPTFSEA  105 (110)
T ss_dssp             HHTTSBHHHHHT-S---BSSSTSTGHH
T ss_pred             HHcCCCHHHHhC-C---eeeCCChhHH
Confidence            999999996555 3   5889999864

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PRK07236 hypothetical protein; Provisional

Probab=98.67  E-value=1.7e-07  Score=91.54  Aligned_cols=102  Identities=25%  Similarity=0.348  Sum_probs=75.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----cCCHHHHHHHH------------------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASYYE------------------------   90 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~~~------------------------   90 (358)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.....     .+.+...+.+.                        
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            3578999999999999999999999999999998654321     02333222222                        


Q ss_pred             -------------------HHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           91 -------------------EYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        91 -------------------~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                                         +.|.+  .+++++.++++++++.++++  ..+.+.+|+++.+|.||.|-|.++..
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence                               11111  13579999999999864433  45788899999999999999977654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.66  E-value=1.5e-06  Score=82.89  Aligned_cols=194  Identities=14%  Similarity=0.204  Sum_probs=116.9

Q ss_pred             CCCCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC-CcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCccc
Q 018320            3 MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM   77 (358)
Q Consensus         3 ~~~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~-~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~l   77 (358)
                      +|+.|..+  .....++||+.      .++.+...+... ++|.|||||.+|.|+-..|...    ..++.++.|++.++
T Consensus       156 ~P~IP~~f--~~l~~~~vfHs------s~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~  227 (436)
T COG3486         156 QPYIPPCF--RSLIGERVFHS------SEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL  227 (436)
T ss_pred             CcCCChHH--hCcCccceeeh------HHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC
Confidence            46666553  33333678853      222222222223 4499999999999999988754    44688899987665


Q ss_pred             Cc--------cCCHHHH------------------------------HHHHHHH-H------hCCCEEEcCCeeeEEEEc
Q 018320           78 AR--------LFTPKIA------------------------------SYYEEYY-K------SKGVKFVKGTVLSSFDVD  112 (358)
Q Consensus        78 ~~--------~~~~~~~------------------------------~~~~~~l-~------~~gV~v~~~~~v~~i~~~  112 (358)
                      |.        .|.|+..                              ..+-+.| +      +..|.++.++.+++++..
T Consensus       228 p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~  307 (436)
T COG3486         228 PMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPA  307 (436)
T ss_pred             ccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecC
Confidence            42        1222211                              1111111 1      246889999999999987


Q ss_pred             CCCcEEEEEc-----CCCcEEecCeEEEeeCCCCChh-hhhc---cccc-ccCcEEEeccccCC--C---CcEEEEcccc
Q 018320          113 SNGKVVAVNL-----RDGNRLPTDMVVVGIGIRPNTS-LFEG---QLTL-EKGGIKVTGRLQSS--N---SSVYAVGDVA  177 (358)
Q Consensus       113 ~~g~v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-l~~~---~~~~-~~g~i~vd~~~~t~--~---~~VyAiGD~~  177 (358)
                      ++|++ .+.+     .+..++++|.||+|||++.... ++..   .+.+ ++|...|+..++..  .   -.||+.|=+.
T Consensus       308 G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~  386 (436)
T COG3486         308 GDGRY-RLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAEL  386 (436)
T ss_pred             CCceE-EEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccc
Confidence            77752 3333     2335789999999999985544 4432   2444 67889998776542  1   2699999776


Q ss_pred             cccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          178 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       178 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      .....  |.+   .+.--|.+.+. ..+.++|..
T Consensus       387 htHGi--g~p---dLsl~a~Raa~-I~~~L~g~~  414 (436)
T COG3486         387 HTHGI--GAP---DLSLGAWRAAV-ILNSLLGRE  414 (436)
T ss_pred             ccccc--CCc---cchHHHHHHHH-HHHHHhCcC
Confidence            64332  222   12223555444 456677765

>PRK10262 thioredoxin reductase; Provisional

Probab=98.64  E-value=8.8e-07  Score=84.23  Aligned_cols=101  Identities=11%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC---cc--------cCc----cCCHHHHHHHHHHHHhCCCEEEcCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGT  104 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~gV~v~~~~  104 (358)
                      +.++++|||||+.|+.+|..|+++|.++++++...   .+        ++.    ...+++.+.+.+.....++++..+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            56899999999999999999999999999997431   11        011    123455677777777788888765 


Q ss_pred             eeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       105 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      .++.++.. ++. ..+... ...+.+|.||+|+|.+|+..
T Consensus        84 ~v~~v~~~-~~~-~~v~~~-~~~~~~d~vilAtG~~~~~~  120 (321)
T PRK10262         84 HINKVDLQ-NRP-FRLTGD-SGEYTCDALIIATGASARYL  120 (321)
T ss_pred             EEEEEEec-CCe-EEEEec-CCEEEECEEEECCCCCCCCC
Confidence            56677652 332 234333 34789999999999998643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.64  E-value=1.4e-07  Score=91.24  Aligned_cols=97  Identities=21%  Similarity=0.307  Sum_probs=72.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccC-ccC---------CHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           43 NAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMA-RLF---------TPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~-~~~---------~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      +|||||||+.|+.+|..|.++   +.+|||+++.+...- +.+         ..++...+.+.+++.||+++.+ .|+++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999999643   689999998765311 101         1223334556677889999875 78899


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +.+  ++  .|.+.+|+++++|.+|+|+|.+|+..
T Consensus        80 d~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             ecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence            752  22  46778888999999999999988754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.63  E-value=1.2e-07  Score=91.48  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=70.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++++|||+|++|+++|..|++.|.+|+++++.+.+...        .++.+......+.+.+.|++++.++.+..+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~   96 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP   96 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence            5789999999999999999999999999999998776421        12333344445667777999999988765532


Q ss_pred             --cCCCcEEEEEc--CCCcEEecCeEEEeeCCC-CC
Q 018320          112 --DSNGKVVAVNL--RDGNRLPTDMVVVGIGIR-PN  142 (358)
Q Consensus       112 --~~~g~v~~v~~--~~g~~i~~D~vi~a~G~~-p~  142 (358)
                        ..+........  .++..+.+|.||+|+|.. |.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~  132 (352)
T PRK12770         97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR  132 (352)
T ss_pred             cccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence              01111111111  112247899999999984 44

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.60  E-value=5.8e-07  Score=83.62  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=73.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------------   79 (358)
                      +|+|||||+.|+-+|..|++.|.+|+++|+.+.+...                                           
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            5899999999999999999999999999988542110                                           


Q ss_pred             ------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CCcEEecCeEEEeeCCCC
Q 018320           80 ------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        80 ------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p  141 (358)
                            .-..++.+.+.+.+.+.|++++.+++++++..++++ + .+.+. ++.++.+|.||.|+|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcch
Confidence                  001234566677778889999999999998764333 2 33333 346799999999999764

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.60  E-value=2.6e-07  Score=91.43  Aligned_cols=102  Identities=25%  Similarity=0.371  Sum_probs=72.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccC---------C-HHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---------T-PKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~---------~-~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      +.+++||||||+.|+.+|..|.+.+.+||||++.+++.-...         + .++...+.+.+++.+++++. .+|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence            457999999999999999999877889999998876421111         1 22333345566677898875 488999


Q ss_pred             EEcCCCcEEEEEc--------CCCcEEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVNL--------RDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~~--------~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +.+ +..+ .+..        .+|.++++|.+|+|+|.+|+..
T Consensus        88 d~~-~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         88 DFE-EKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             EcC-CCEE-EEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            762 3322 2211        4567899999999999987643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.60  E-value=1.7e-07  Score=100.69  Aligned_cols=93  Identities=23%  Similarity=0.196  Sum_probs=73.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+|+|+|||||+.|+.+|..|++.|++||++++.+.+..       . -++.++.+...+.+++.||+|++++.+-    
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG----  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG----  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence            579999999999999999999999999999999875432       1 1355666777778889999999886542    


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCC-CC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR-PN  142 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~-p~  142 (358)
                            ..+.+.+.....+|.|++|+|.. |.
T Consensus       381 ------~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        381 ------KTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence                  12455555566799999999984 54

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.59  E-value=1.8e-07  Score=99.27  Aligned_cols=98  Identities=20%  Similarity=0.372  Sum_probs=74.3

Q ss_pred             EEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCccc------CccCC-----HHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           44 AVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM------ARLFT-----PKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      +||||+|+.|+.+|..|.++   +.+|||+++.+++.      +..+.     +++.....+.+++.||++++++.|++|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            68999999999999999876   46899999887641      11111     122222356678899999999999999


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  145 (358)
                      +..  .  ..|.+.+|+++++|.+|+|||.+|+...
T Consensus        81 d~~--~--k~V~~~~g~~~~yD~LVlATGs~p~~p~  112 (785)
T TIGR02374        81 DTD--Q--KQVITDAGRTLSYDKLILATGSYPFILP  112 (785)
T ss_pred             ECC--C--CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence            752  2  2466788889999999999999987543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.56  E-value=3.6e-07  Score=97.64  Aligned_cols=91  Identities=27%  Similarity=0.292  Sum_probs=69.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------c-CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------L-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+|+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...       . ++.+....-.+.+++.||++++++.+ .+. 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            4689999999999999999999999999999987754221       1 24445555556778899999999876 222 


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                                +.+.+...+|.||+|||.++.
T Consensus       616 ----------le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 ----------VEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ----------hhhheeccCCEEEECcCCCCC
Confidence                      122344568999999998754

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.56  E-value=1.8e-07  Score=93.39  Aligned_cols=90  Identities=23%  Similarity=0.292  Sum_probs=70.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||||+.|+++|..|++.|.+|+++++.+.+..       . .++.++.....+.+++.||++++++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            468999999999999999999999999999999876521       1 13567777778888999999999886521   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                             .+.+.+. .+.+|.||+|+|..
T Consensus       216 -------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHH-HhhCCEEEEccCCC
Confidence                   1222222 37799999999985

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.56  E-value=3e-07  Score=97.97  Aligned_cols=100  Identities=17%  Similarity=0.337  Sum_probs=75.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCccc------CccC----CHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM------ARLF----TPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~l------~~~~----~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      .+++||||+|+.|+.+|..|.++    +.+||++++.+++.      +..+    ..++.....+.+++.||+++.++.|
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            35899999999999999999765    47899999887642      1111    1122222345678899999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++++.  +.  ..|.+.+|+++++|.+|+|||.+|...
T Consensus        83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence            99975  22  246677888999999999999998754

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.7e-06  Score=81.58  Aligned_cols=99  Identities=16%  Similarity=0.294  Sum_probs=75.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCc---c--------cC----ccCCHHHHHHHHHHHHhCCCEEEcCCe
Q 018320           42 GNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH---C--------MA----RLFTPKIASYYEEYYKSKGVKFVKGTV  105 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~---~--------l~----~~~~~~~~~~~~~~l~~~gV~v~~~~~  105 (358)
                      .+|+|||||+.|+.+|..+.+.+.+ +.|++....   +        .|    ....+++.+.+.++.+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4799999999999999999999998 555554311   1        11    124567888888888889999997 67


Q ss_pred             eeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          106 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       106 v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +.+++..++  ...+++.+++ +.++.||+|+|..+...
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            778875322  4678888877 99999999999876654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.55  E-value=3.5e-07  Score=88.76  Aligned_cols=99  Identities=25%  Similarity=0.403  Sum_probs=76.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCccC----------CHHHHHHHHHHHHhCC-CEEEcCCeee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLF----------TPKIASYYEEYYKSKG-VKFVKGTVLS  107 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~g-V~v~~~~~v~  107 (358)
                      .+++||||||+.|+.+|..|.+.-  .+||+|++.+..+-..+          +.++...+.+.+++.+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            579999999999999999999974  89999999876432111          2344555677777555 999865 788


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +|+.  +.  ..|.+.++..+++|.+|+++|.++++.
T Consensus        82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence            9975  23  256777778899999999999998875

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.53  E-value=2.5e-07  Score=88.71  Aligned_cols=117  Identities=22%  Similarity=0.324  Sum_probs=69.7

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccCc--------cCCHHH--
Q 018320           18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR--------LFTPKI--   85 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~~--------~~~~~~--   85 (358)
                      ++|++...+.....  .   ...+++|+|||||.+|.|++..|.+.+.  +|+++.|++.+.+.        .++|+.  
T Consensus       172 ~~v~Hss~~~~~~~--~---~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~  246 (341)
T PF13434_consen  172 PRVFHSSEYLSRID--Q---SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVD  246 (341)
T ss_dssp             TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHH
T ss_pred             CCEEEehHhhhccc--c---ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhh
Confidence            67887655433221  1   2257899999999999999999999875  89999998765331        233332  


Q ss_pred             -----------------------------HHHHHHH-----H-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--
Q 018320           86 -----------------------------ASYYEEY-----Y-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--  125 (358)
Q Consensus        86 -----------------------------~~~~~~~-----l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--  125 (358)
                                                   .+.+.+.     + .+..++++.+++|++++.+++|.+ .+.+.+   +  
T Consensus       247 ~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~  325 (341)
T PF13434_consen  247 YFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEE  325 (341)
T ss_dssp             HHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--E
T ss_pred             hhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCe
Confidence                                         2122111     1 223588999999999988665443 344433   2  


Q ss_pred             cEEecCeEEEeeCCC
Q 018320          126 NRLPTDMVVVGIGIR  140 (358)
Q Consensus       126 ~~i~~D~vi~a~G~~  140 (358)
                      .++++|.||+|||++
T Consensus       326 ~~~~~D~VilATGy~  340 (341)
T PF13434_consen  326 ETLEVDAVILATGYR  340 (341)
T ss_dssp             EEEEESEEEE---EE
T ss_pred             EEEecCEEEEcCCcc
Confidence            468999999999974

>PRK06834 hypothetical protein; Provisional

Probab=98.52  E-value=1.4e-06  Score=87.85  Aligned_cols=100  Identities=27%  Similarity=0.392  Sum_probs=76.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---Cc--cCC----------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---AR--LFT----------------------------------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---~~--~~~----------------------------------   82 (358)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+.   ++  .+.                                  
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            579999999999999999999999999999865321   00  000                                  


Q ss_pred             ----------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           83 ----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        83 ----------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                                      ..+.+.+.+.+++.||+++.++++++++.++++  ..+++.+|+++.+|.||.|.|.++..
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence                            122334455667789999999999999875444  34666788899999999999988754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.52  E-value=1.8e-06  Score=88.33  Aligned_cols=98  Identities=19%  Similarity=0.318  Sum_probs=74.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc------------Cc---cCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------AR---LFTPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l------------~~---~~~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+ +.            +.   ....++.+.+.+.+++.|++++ ++.+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            579999999999999999999999999999853 21            11   0124566777778888899986 6678


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++++.+  +....+.+.++ .+.+|.+|+|+|.+|...
T Consensus        83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            888752  23334555555 689999999999988654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.51  E-value=7.3e-07  Score=88.60  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc------CccCCH---HHHHHH----HHHHHhCCCEEEcCCee
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLFTP---KIASYY----EEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l------~~~~~~---~~~~~~----~~~l~~~gV~v~~~~~v  106 (358)
                      ++|||||||+.|+.+|..|+++  +.+|+|+++.+.+.      +.....   ...+.+    .+..++.||+++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            4799999999999999999987  67899999986532      111100   000111    23335679999999999


Q ss_pred             eEEEEcCCCcEEEEEcCC-Cc--EEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNLRD-GN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~-g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      ++|+. ++. ...+...+ ++  ++++|.+|+|||.+|+..
T Consensus        82 ~~Id~-~~~-~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~  120 (438)
T PRK13512         82 IAIND-ERQ-TVTVLNRKTNEQFEESYDKLILSPGASANSL  120 (438)
T ss_pred             EEEEC-CCC-EEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence            99986 233 22333222 22  478999999999998753

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.51  E-value=1.3e-06  Score=85.25  Aligned_cols=101  Identities=23%  Similarity=0.357  Sum_probs=76.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------------Cc---------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------AR---------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------------~~---------------------------   79 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-              +.                           
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            4689999999999999999999999999999864210              00                           


Q ss_pred             ---------cCC---------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320           80 ---------LFT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        80 ---------~~~---------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                               .++               ..+.+.+.+.+++.|++++.++++++++.++++  ..+++.+|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEE
Confidence                     000               123344455667789999999999999864433  347778888999999999


Q ss_pred             eeCCCCCh
Q 018320          136 GIGIRPNT  143 (358)
Q Consensus       136 a~G~~p~~  143 (358)
                      |.|..+..
T Consensus       164 AdG~~S~v  171 (392)
T PRK08773        164 ADGAASTL  171 (392)
T ss_pred             ecCCCchH
Confidence            99998754

>PRK07045 putative monooxygenase; Reviewed

Probab=98.51  E-value=1.6e-06  Score=84.66  Aligned_cols=102  Identities=23%  Similarity=0.271  Sum_probs=77.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC---------c--------------------c------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R--------------------L------------   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~---------~--------------------~------------   80 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..         .                    .            
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4899999999999999999999999999998654310         0                    0            


Q ss_pred             -----------CC-------HHHHHHHHHHHH-hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           81 -----------FT-------PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        81 -----------~~-------~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                                 .+       .++.+.+.+.+. ..|++++++++++.++.++++.+..+++.+|+++.+|.||.|.|.+.
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence                       00       012233333443 35799999999999987666655578888999999999999999876


Q ss_pred             Ch
Q 018320          142 NT  143 (358)
Q Consensus       142 ~~  143 (358)
                      ..
T Consensus       166 ~v  167 (388)
T PRK07045        166 MI  167 (388)
T ss_pred             HH
Confidence            44

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.50  E-value=1.3e-06  Score=85.38  Aligned_cols=101  Identities=23%  Similarity=0.283  Sum_probs=74.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------cC-----
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LF-----   81 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~~-----   81 (358)
                      +.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                                  ..     
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            578999999999999999999999999999987543110                                  00     


Q ss_pred             --------C----------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320           82 --------T----------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  136 (358)
Q Consensus        82 --------~----------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  136 (358)
                              +                .++.+.+.+.+.+. +|+++.++++++++.++++  ..+.+.+|+++.+|.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence                    0                01122233344444 4999999999999864333  3577788889999999999


Q ss_pred             eCCCCCh
Q 018320          137 IGIRPNT  143 (358)
Q Consensus       137 ~G~~p~~  143 (358)
                      .|..+..
T Consensus       162 dG~~S~~  168 (396)
T PRK08163        162 DGVKSVV  168 (396)
T ss_pred             CCcChHH
Confidence            9987654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.49  E-value=9.8e-07  Score=87.90  Aligned_cols=96  Identities=20%  Similarity=0.343  Sum_probs=68.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------------------------CC----
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------------------------FT----   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------------------------~~----   82 (358)
                      -.++|||||+.|+++|..++++|.+|+|+++. .+....                                   ++    
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL   81 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence            36999999999999999999999999999974 221110                                   01    


Q ss_pred             --------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           83 --------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        83 --------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                              .++.+.+++.+++.||+++.+ ++..++.   ..+ .+. .+|+++.+|.||+|||.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v-~v~-~~g~~~~~d~lIiATGs~p~~p  145 (446)
T TIGR01424        82 LQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTV-EVL-QDGTTYTAKKILIAVGGRPQKP  145 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEE-EEe-cCCeEEEcCEEEEecCCcCCCC
Confidence                    012344556677889999876 5555532   222 232 4677899999999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.49  E-value=8.1e-07  Score=85.88  Aligned_cols=95  Identities=24%  Similarity=0.341  Sum_probs=69.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEe-eCCcccC-------------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVF-PEAHCMA-------------------------------------------   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~-~~~~~l~-------------------------------------------   78 (358)
                      +|+|||||..|+|+|..+++.|.+|.|+. +.+.+..                                           
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            48999999999999999999999999994 3222200                                           


Q ss_pred             ---c------cCCH-HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           79 ---R------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        79 ---~------~~~~-~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                         .      +.|. .....+.+.+++ .+++++ ..+|+++.. +++++..|.+.+|.++.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence               0      1122 234555666766 689987 568999976 678999999999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.49  E-value=3.5e-07  Score=91.16  Aligned_cols=93  Identities=23%  Similarity=0.263  Sum_probs=70.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            35789999999999999999999999999999876542       11 14567777777788899999999875411   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCC-CCCh
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  143 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~  143 (358)
                             .+.+.+. ...+|.||+|+|. .|..
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~~  233 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPKL  233 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence                   1233322 3469999999997 5653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02463 lycopene beta cyclase

Probab=98.49  E-value=1.2e-06  Score=86.96  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=73.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-CccC---------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARLF---------------------------------------   81 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-~~~~---------------------------------------   81 (358)
                      -+|+|||||+.|+.+|..|++.|.+|.++++.+... +...                                       
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            479999999999999999999999999999865321 1100                                       


Q ss_pred             ----CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           82 ----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        82 ----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                          ..++.+.+.+.+.+.||+++ ..+|++++.++++  ..|.+++|+++.+|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence                01223445555667899997 5689999864333  4677889989999999999998754

>PRK07588 hypothetical protein; Provisional

Probab=98.47  E-value=2e-06  Score=84.00  Aligned_cols=98  Identities=16%  Similarity=0.174  Sum_probs=71.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------------   79 (358)
                      +|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..                                           
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            6999999999999999999999999999986543100                                           


Q ss_pred             -cCC-----------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           80 -LFT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        80 -~~~-----------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                       .++                 .++.+.+.+.+ ..++++++++++++++.++++  ..+.+++|+++.+|.||.|.|.++
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence             000                 00111122222 347999999999999874433  357888999999999999999876


Q ss_pred             Ch
Q 018320          142 NT  143 (358)
Q Consensus       142 ~~  143 (358)
                      ..
T Consensus       159 ~v  160 (391)
T PRK07588        159 HV  160 (391)
T ss_pred             cc
Confidence            54

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.47  E-value=1.4e-06  Score=84.83  Aligned_cols=98  Identities=15%  Similarity=0.261  Sum_probs=70.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc--CccC--------C-HHHHH-HHHHHHHhCCCEEEcCCeee
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--ARLF--------T-PKIAS-YYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l--~~~~--------~-~~~~~-~~~~~l~~~gV~v~~~~~v~  107 (358)
                      +++||||||+.|+.+|..|++.  ..+||++.+.+...  ...+        . .++.. ...+.+++.||+++.+++|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            5899999999999999999886  45799998876421  1111        1 11221 13345677899999999999


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +++. ++.   .+.+ ++.++.+|.+|+|||.+|...
T Consensus        83 ~id~-~~~---~v~~-~~~~~~yd~LVlATG~~~~~p  114 (377)
T PRK04965         83 DIDA-EAQ---VVKS-QGNQWQYDKLVLATGASAFVP  114 (377)
T ss_pred             EEEC-CCC---EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence            9975 222   2333 577899999999999988654

>PRK08244 hypothetical protein; Provisional

Probab=98.47  E-value=1.9e-06  Score=86.97  Aligned_cols=102  Identities=24%  Similarity=0.335  Sum_probs=74.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------   79 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                                          
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            46999999999999999999999999999986432100                                          


Q ss_pred             cC--------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCCh
Q 018320           80 LF--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        80 ~~--------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~  143 (358)
                      .+              -..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|.++..
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v  161 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV  161 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence            00              01234555566677899999999999998755442222333356 479999999999988754

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.46  E-value=1.2e-06  Score=83.42  Aligned_cols=55  Identities=29%  Similarity=0.433  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      ...+.+.+++.|++++++++|++++. +++.+..|.+.+|+ +.+|.||+|+|....
T Consensus       150 ~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~  204 (358)
T PF01266_consen  150 IQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP  204 (358)
T ss_dssp             HHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred             hhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce
Confidence            34455667778999999999999987 45566668999987 999999999997543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=98.45  E-value=3.8e-06  Score=77.66  Aligned_cols=192  Identities=17%  Similarity=0.246  Sum_probs=128.1

Q ss_pred             CCccCCCCC----CCCCCeEEecCHHHHHHHHHHHhcCCCCcEE---------EEcCcHHHHHHHHH-HHhCCC--cEEE
Q 018320            6 KLEEFGLSG----SDAENVCYLRDLADANRLVNVMKSCSGGNAV---------VIGGGYIGMECAAS-LVINKI--NVTM   69 (358)
Q Consensus         6 ~P~~~~ipG----~~~~~v~~l~~~~da~~i~~~l~~~~~~~vv---------VIGgG~~gle~A~~-L~~~g~--~Vtl   69 (358)
                      +.+.-.|+|    .+.|+|.+..+...+++..+.+...+..+++         --|+-.-.+-+++. ++++|.  ++.+
T Consensus       144 ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~i  223 (446)
T KOG3851|consen  144 QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANI  223 (446)
T ss_pred             eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccE
Confidence            334445666    4668999999998888888777755443332         23555556666655 555665  3555


Q ss_pred             EeeCCcccCccCC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-C--cEEecCeEEEeeCCCCChhh
Q 018320           70 VFPEAHCMARLFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        70 v~~~~~~l~~~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~a~G~~p~~~l  145 (358)
                      +..-.  ++..|+ ...++.+++..++++|++.....+.++..++...+.. .+.+ |  .+++++++-+....++...+
T Consensus       224 iy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~pe~l  300 (446)
T KOG3851|consen  224 IYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTPEVL  300 (446)
T ss_pred             EEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCChhhh
Confidence            43321  344444 3457788888899999999999998887633221111 1222 4  46889999998888877666


Q ss_pred             hhcccccccCcEEEec-cccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          146 FEGQLTLEKGGIKVTG-RLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       146 ~~~~~~~~~g~i~vd~-~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      ....+....|++.||. .+|. ..||||+||||...|..        ..++....|...+-.|+.
T Consensus       301 ~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pns--------KTaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  301 ANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNS--------KTAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             hcCcccCcccceecChhhhccccCCCceeeccccCCCch--------hhHHHHHhcCchhhhhHH
Confidence            6666666789999994 5665 89999999999998764        334444456666666665

>PRK12831 putative oxidoreductase; Provisional

Probab=98.45  E-value=4.8e-07  Score=90.49  Aligned_cols=94  Identities=24%  Similarity=0.320  Sum_probs=68.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Ccc-CCH-HHHHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------ARL-FTP-KIASYYEEYYKSKGVKFVKGTVLSSFD  110 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~~-~~~-~~~~~~~~~l~~~gV~v~~~~~v~~i~  110 (358)
                      .+++|+|||||+.|+.+|..|+++|++|+++++.+.+.       +.. ++. ++.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            47899999999999999999999999999999876531       110 222 3556666788889999999985521  


Q ss_pred             EcCCCcEEEEEcCCC-cEEecCeEEEeeCC-CCCh
Q 018320          111 VDSNGKVVAVNLRDG-NRLPTDMVVVGIGI-RPNT  143 (358)
Q Consensus       111 ~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~-~p~~  143 (358)
                              .+.+.+. +.+.+|.||+|+|. .|..
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~  243 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF  243 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence                    1222332 34579999999997 4643

>PRK05868 hypothetical protein; Validated

Probab=98.45  E-value=1.8e-06  Score=83.89  Aligned_cols=100  Identities=20%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--c--CC-------------HH--------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--L--FT-------------PK--------------------   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--~--~~-------------~~--------------------   84 (358)
                      ++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...  .  +.             ++                    
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            47999999999999999999999999999986543110  0  00             00                    


Q ss_pred             ---------------------HHHHHHHHHH---hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           85 ---------------------IASYYEEYYK---SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        85 ---------------------~~~~~~~~l~---~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                                           ....+.+.|.   ..|+++++++++++++.++++  ..+.+.+|+++.+|+||-|-|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDS--VRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCe--EEEEECCCCeEEeCEEEECCCCC
Confidence                                 0112223332   358999999999999764333  46788999999999999999987


Q ss_pred             CCh
Q 018320          141 PNT  143 (358)
Q Consensus       141 p~~  143 (358)
                      ...
T Consensus       160 S~v  162 (372)
T PRK05868        160 SNV  162 (372)
T ss_pred             chH
Confidence            654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.44  E-value=2.3e-06  Score=83.99  Aligned_cols=100  Identities=16%  Similarity=0.259  Sum_probs=74.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc----------ccCc--cCC---------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CMAR--LFT---------------------------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~----------~l~~--~~~---------------------------   82 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.          ..++  .+.                           
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            4799999999999999999999999999998651          0000  000                           


Q ss_pred             -----------------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeE
Q 018320           83 -----------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV  133 (358)
Q Consensus        83 -----------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v  133 (358)
                                                   ..+.+.+.+.+++.|++++.++++++++.++++  ..+.+.+|+++.+|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                                         011223344556679999999999999875444  3577788889999999


Q ss_pred             EEeeCCCCCh
Q 018320          134 VVGIGIRPNT  143 (358)
Q Consensus       134 i~a~G~~p~~  143 (358)
                      |.|.|..+..
T Consensus       161 VgAdG~~S~v  170 (405)
T PRK05714        161 VAADGANSAV  170 (405)
T ss_pred             EEecCCCchh
Confidence            9999987654

>PLN02661 Putative thiazole synthesis

Probab=98.44  E-value=1e-05  Score=77.25  Aligned_cols=167  Identities=15%  Similarity=0.177  Sum_probs=102.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccC----------c----------------cCC----------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA----------R----------------LFT----------   82 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~----------~----------------~~~----------   82 (358)
                      ..-+|+|||+|..|+-+|..|++. |.+|+++++...+..          .                .++          
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            345899999999999999999976 899999998754311          0                001          


Q ss_pred             -HHHHHHHH-HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc------CC--------CcEEecCeEEEeeCCCCChh--
Q 018320           83 -PKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL------RD--------GNRLPTDMVVVGIGIRPNTS--  144 (358)
Q Consensus        83 -~~~~~~~~-~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~------~~--------g~~i~~D~vi~a~G~~p~~~--  144 (358)
                       .+....+. +.+++.||+++.++.+.++.. +++++..+.+      .+        ...+.++.||+|||..+...  
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~  249 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT  249 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence             11111223 334457899999999999876 4566666653      11        12689999999999654321  


Q ss_pred             hhhcc--ccc-c--c--CcEEEe--c-----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          145 LFEGQ--LTL-E--K--GGIKVT--G-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       145 l~~~~--~~~-~--~--g~i~vd--~-----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      ..+..  +.. .  .  ....++  |     +-+--.|++|++|-.+.--   .|.+++-|.-..=...|+.||+.|+..
T Consensus       250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~---~g~~rmgp~fg~m~~sg~k~a~~~~~~  326 (357)
T PLN02661        250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI---DGSPRMGPTFGAMMISGQKAAHLALKA  326 (357)
T ss_pred             hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh---cCCCccCchhHhHHhhhHHHHHHHHHH
Confidence            11110  000 0  0  111111  0     1111479999999887642   355555555554456788888877654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.43  E-value=3.9e-06  Score=85.12  Aligned_cols=136  Identities=27%  Similarity=0.325  Sum_probs=87.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------C----------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------F----------   81 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------~----------   81 (358)
                      |+|+|||+|++|+-.|..|.+.|.+++++|+.+.+....                              +          
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            799999999999999999999999999999976541100                              0          


Q ss_pred             -CHHHHHHHHHHHHhCCC--EEEcCCeeeEEEEcCC----CcEEEEEcC-CCc--EEecCeEEEeeCCC--CChhh--hh
Q 018320           82 -TPKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN----GKVVAVNLR-DGN--RLPTDMVVVGIGIR--PNTSL--FE  147 (358)
Q Consensus        82 -~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~----g~v~~v~~~-~g~--~i~~D~vi~a~G~~--p~~~l--~~  147 (358)
                       ..++.++++.+.++.++  .+.++++|++++..++    ++ ..|++. +|+  +..+|.|++|+|..  |+...  +.
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence             14678888888887776  6889999999987544    33 234443 443  35689999999954  55442  21


Q ss_pred             cccccccCcEEEeccccC----CCCcEEEEcccccc
Q 018320          148 GQLTLEKGGIKVTGRLQS----SNSSVYAVGDVAAF  179 (358)
Q Consensus       148 ~~~~~~~g~i~vd~~~~t----~~~~VyAiGD~~~~  179 (358)
                       +++.=.|.|.-...++.    ..++|.++|-..+.
T Consensus       161 -G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg  195 (531)
T PF00743_consen  161 -GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG  195 (531)
T ss_dssp             -TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred             -hhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence             22222355554444443    46789999987653

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.42  E-value=3e-06  Score=82.84  Aligned_cols=101  Identities=21%  Similarity=0.292  Sum_probs=76.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-CcccCcc---------------C-----------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARL---------------F-----------------------   81 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~l~~~---------------~-----------------------   81 (358)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+. +.+.+..               +                       
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            357999999999999999999999999999997 2221100               0                       


Q ss_pred             ---------------------CHHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcCCCcEEEEEcC-CCcEEecCeEEEeeC
Q 018320           82 ---------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIG  138 (358)
Q Consensus        82 ---------------------~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G  138 (358)
                                           -.++...+.+.+.+.+ |+++.+++|+.++.+++ .+. ++++ ||+++.||+||-|-|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCCCcEEecCEEEECCC
Confidence                                 0124455566666555 99999999999987443 333 6677 999999999999999


Q ss_pred             CCCCh
Q 018320          139 IRPNT  143 (358)
Q Consensus       139 ~~p~~  143 (358)
                      ..+..
T Consensus       160 ~~S~v  164 (387)
T COG0654         160 ANSAV  164 (387)
T ss_pred             CchHH
Confidence            76543

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.42  E-value=2.8e-06  Score=83.13  Aligned_cols=99  Identities=25%  Similarity=0.436  Sum_probs=75.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCc-----------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      +|+|||||+.|+-+|..|++.|  .+|+|+|+.+...+.                                         
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            6999999999999999999995  999999986431000                                         


Q ss_pred             ----------cC---------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320           80 ----------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  134 (358)
Q Consensus        80 ----------~~---------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  134 (358)
                                .+               ..++.+.+.+.+.+.|++++.++++++++.++++  ..+++.+|+++.+|.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence                      00               0123444556667789999999999999864333  35777888899999999


Q ss_pred             EeeCCCCCh
Q 018320          135 VGIGIRPNT  143 (358)
Q Consensus       135 ~a~G~~p~~  143 (358)
                      .|.|..+..
T Consensus       161 ~AdG~~S~v  169 (403)
T PRK07333        161 AADGARSKL  169 (403)
T ss_pred             EcCCCChHH
Confidence            999987653

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.42  E-value=3.2e-06  Score=82.17  Aligned_cols=98  Identities=14%  Similarity=0.299  Sum_probs=73.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccCc--------cCC-------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------LFT-------------------------------   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~~--------~~~-------------------------------   82 (358)
                      .|+|||||+.|+-+|..|++.| .+|+|+|+.+.+-+.        .+.                               
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            4899999999999999999999 999999986532110        000                               


Q ss_pred             ------------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320           83 ------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        83 ------------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                                              .++.+.+.+.+.+ .|++++.++++++++.++++  ..+.+.+|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence                                    1123333444555 49999999999999864444  35677888899999999999


Q ss_pred             CCCCC
Q 018320          138 GIRPN  142 (358)
Q Consensus       138 G~~p~  142 (358)
                      |....
T Consensus       159 G~~S~  163 (382)
T TIGR01984       159 GANSK  163 (382)
T ss_pred             CCChH
Confidence            97653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06184 hypothetical protein; Provisional

Probab=98.42  E-value=2.8e-06  Score=85.92  Aligned_cols=99  Identities=15%  Similarity=0.232  Sum_probs=74.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------c
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------L   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------~   80 (358)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                                         .
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            47999999999999999999999999999986433100                                         0


Q ss_pred             ----------------------CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCcEEecCeEE
Q 018320           81 ----------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV  134 (358)
Q Consensus        81 ----------------------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi  134 (358)
                                            ++ ..+.+.+.+.+.+.|++++.++++++++.++++.  .+.+   .+++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence                                  00 1123445566777899999999999998755542  3444   456789999999


Q ss_pred             EeeCCCCC
Q 018320          135 VGIGIRPN  142 (358)
Q Consensus       135 ~a~G~~p~  142 (358)
                      .|.|.++.
T Consensus       162 gADG~~S~  169 (502)
T PRK06184        162 GADGGRSF  169 (502)
T ss_pred             ECCCCchH
Confidence            99998764

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.41  E-value=7.2e-06  Score=72.26  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=103.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------C-------------------------------CH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------~-------------------------------~~   83 (358)
                      ...|+|||+|++|+.+|..|++.|.+|+++|+.-.+....      |                               +.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            3689999999999999999999999999999975442110      0                               11


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CCcEEecCeEEEeeCCCCChh-hh-hcc-
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF-EGQ-  149 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-l~-~~~-  149 (358)
                      +....+....-+.|.++...+.++.+--.++.++..+..+           |.-.++++.|+=+||.....- ++ +.. 
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~  189 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP  189 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence            2222333334456899999999988754233255555442           345789999999999765432 22 111 


Q ss_pred             ---cccc-cC--------cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          150 ---LTLE-KG--------GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       150 ---~~~~-~g--------~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                         .... .+        ...|+. -+--.|++|++|-.+..   ++|.++.-|.-.-=...|+.||+.++.
T Consensus       190 ~l~~~~~Ge~~mw~e~~E~lvV~~-T~eV~pgL~vaGMa~~a---v~G~pRMGPiFGgMllSGkkaAe~i~e  257 (262)
T COG1635         190 ELGIEVPGEKSMWAERGEDLVVEN-TGEVYPGLYVAGMAVNA---VHGLPRMGPIFGGMLLSGKKAAEEILE  257 (262)
T ss_pred             ccccccCCCcchhhhHHHHHHHhc-cccccCCeEeehhhHHh---hcCCcccCchhhhhhhchHHHHHHHHH
Confidence               1110 01        112221 12247999999988764   235555545444445678888876653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.41  E-value=8.5e-07  Score=88.81  Aligned_cols=92  Identities=22%  Similarity=0.321  Sum_probs=70.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.       +. .++.++.....+.+++.||+++.++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46899999999999999999999999999999887642       11 146667667778889999999999866221  


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                              +.+.+ ....+|.||+|+|..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12469999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.39  E-value=4e-06  Score=81.66  Aligned_cols=99  Identities=22%  Similarity=0.324  Sum_probs=74.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc---------cC-------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------LF-------------------------------   81 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---------~~-------------------------------   81 (358)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...         .+                               
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            47999999999999999999999999999987553110         00                               


Q ss_pred             ------------------------CHHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320           82 ------------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  136 (358)
Q Consensus        82 ------------------------~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  136 (358)
                                              ...+.+.+.+.+++.| ++++ ++++++++.++++  ..+++.+|+++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence                                    0122334445566666 9999 8899999764333  3577788888999999999


Q ss_pred             eCCCCCh
Q 018320          137 IGIRPNT  143 (358)
Q Consensus       137 ~G~~p~~  143 (358)
                      .|..+..
T Consensus       163 dG~~S~v  169 (388)
T PRK07608        163 DGAHSWV  169 (388)
T ss_pred             CCCCchH
Confidence            9987643

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.38  E-value=4.8e-06  Score=82.50  Aligned_cols=98  Identities=21%  Similarity=0.381  Sum_probs=72.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------c---------CC----------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------L---------FT----------------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------~---------~~----------------   82 (358)
                      -+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..+              .         +.                
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            47999999999999999999999999999986532100              0         00                


Q ss_pred             ----------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           83 ----------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        83 ----------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                                            .++-+.+.+..++.|++++.+++|+++.. +++.+..+. .+|.++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                  01122344556678999999999999876 345544443 567789999999999974


Q ss_pred             C
Q 018320          141 P  141 (358)
Q Consensus       141 p  141 (358)
                      +
T Consensus       164 s  164 (428)
T PRK10157        164 S  164 (428)
T ss_pred             H
Confidence            3

>PRK09126 hypothetical protein; Provisional

Probab=98.38  E-value=5e-06  Score=81.10  Aligned_cols=100  Identities=26%  Similarity=0.400  Sum_probs=73.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-----------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-----------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-----------------------------------   79 (358)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-       ..                                   
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            479999999999999999999999999999875310       00                                   


Q ss_pred             --------cCCH---------------HHHHHHHHHH-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320           80 --------LFTP---------------KIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        80 --------~~~~---------------~~~~~~~~~l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                              .++.               .+.+.+.+.+ +..|++++.++++++++.++++  ..+.+++|+++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence                    0000               0111222223 3468999999999999864333  357778899999999999


Q ss_pred             eeCCCCCh
Q 018320          136 GIGIRPNT  143 (358)
Q Consensus       136 a~G~~p~~  143 (358)
                      |.|..+..
T Consensus       162 AdG~~S~v  169 (392)
T PRK09126        162 ADSRFSAT  169 (392)
T ss_pred             eCCCCchh
Confidence            99987765

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.37  E-value=4.8e-06  Score=80.78  Aligned_cols=98  Identities=19%  Similarity=0.327  Sum_probs=73.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c--cCC-------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R--LFT-------------------------------   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~--~~~-------------------------------   82 (358)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            489999999999999999999999999999853200       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320           83 -------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  136 (358)
Q Consensus        83 -------------------------~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  136 (358)
                                               .++.+.+.+.+.+.| ++++.+++|++++.+++ . ..+.+.+|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-H-VELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-e-eEEEECCCCEEEeeEEEEe
Confidence                                     012233344455666 99999999999986433 3 3577888989999999999


Q ss_pred             eCCCCC
Q 018320          137 IGIRPN  142 (358)
Q Consensus       137 ~G~~p~  142 (358)
                      .|..+.
T Consensus       159 dG~~S~  164 (385)
T TIGR01988       159 DGANSK  164 (385)
T ss_pred             CCCCCH
Confidence            997654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06116 glutathione reductase; Validated

Probab=98.37  E-value=1.9e-06  Score=85.82  Aligned_cols=95  Identities=23%  Similarity=0.408  Sum_probs=66.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------------CC-HH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FT-PK   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~~   84 (358)
                      -.++|||||+.|+.+|..|+++|.+|+|+++. .+....                                    ++ ..
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK   83 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence            47999999999999999999999999999975 221000                                    00 00


Q ss_pred             -----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320           85 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        85 -----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  145 (358)
                                 +.+.+.+.+.+.||+++.++ ++.++   ..   .+++ +|+++.+|.+|+|||.+|....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~---~~---~v~~-~g~~~~~d~lViATGs~p~~p~  147 (450)
T PRK06116         84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD---AH---TVEV-NGERYTADHILIATGGRPSIPD  147 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CC---EEEE-CCEEEEeCEEEEecCCCCCCCC
Confidence                       11223344667899999874 44442   22   3444 6778999999999999987543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.37  E-value=2.8e-06  Score=80.90  Aligned_cols=102  Identities=25%  Similarity=0.378  Sum_probs=72.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc---------------------------------------c---
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------------------L---   80 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---------------------------------------~---   80 (358)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                                       .   
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            6999999999999999999999999999996543100                                       0   


Q ss_pred             -------------C-------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CC--cEEecC
Q 018320           81 -------------F-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTD  131 (358)
Q Consensus        81 -------------~-------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D  131 (358)
                                   +             -.++.+.+.+.+++.|++++.+++++.++.+.++....+... +|  +++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                         0             024556667777788999999999999987555532233333 34  368999


Q ss_pred             eEEEeeCCCCChh
Q 018320          132 MVVVGIGIRPNTS  144 (358)
Q Consensus       132 ~vi~a~G~~p~~~  144 (358)
                      +||-|-|.++...
T Consensus       163 lvVgADG~~S~vR  175 (356)
T PF01494_consen  163 LVVGADGAHSKVR  175 (356)
T ss_dssp             EEEE-SGTT-HHH
T ss_pred             eeecccCcccchh
Confidence            9999999887543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.36  E-value=1.1e-06  Score=93.00  Aligned_cols=94  Identities=22%  Similarity=0.283  Sum_probs=70.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||||+.|+.+|..|++.|.+|+++++.+.+.       |. -++.++.....+.+++.||+|++++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            47899999999999999999999999999999865432       11 13455666666778889999999875411   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCC-CCCh
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  143 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~  143 (358)
                             .+.+.+.....+|.||+|+|. .|..
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                   233344445679999999998 4654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.36  E-value=3.4e-06  Score=83.79  Aligned_cols=98  Identities=20%  Similarity=0.208  Sum_probs=64.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC----------ccC---------C-HHH-----------HHHHH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------RLF---------T-PKI-----------ASYYE   90 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~----------~~~---------~-~~~-----------~~~~~   90 (358)
                      -+++|||||+.|+++|..|+++|.+|+|+++.+.++.          ...         + +++           .....
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY   83 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999998753211          100         0 111           11122


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEEEeeCCCCChh
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +.+.+.||+++.++. ..+   ++..+ .+...+ ..++.+|.||+|||.+|+..
T Consensus        84 ~~~~~~gV~~~~g~~-~~~---~~~~v-~v~~~~~~~~~~~d~vViATGs~~~~p  133 (438)
T PRK07251         84 AMLAGSGVDLYDAEA-HFV---SNKVI-EVQAGDEKIELTAETIVINTGAVSNVL  133 (438)
T ss_pred             HHHHhCCCEEEEEEE-EEc---cCCEE-EEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence            446678999987653 222   22222 233222 34799999999999998654

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.36  E-value=1.3e-06  Score=87.42  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=66.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHh--CCCcEEEEeeCCcccCcc---------CCHHHHHHHHHHHHhCCCEEEcCCeeeE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMARL---------FTPKIASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~--~g~~Vtlv~~~~~~l~~~---------~~~~~~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      .+++|+|||+|+.|+.+|..|++  .|++|+|+++.+.+....         ....+...+.+.+.+.+|+++.+..+-.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999987  799999999998764210         1122334455667778999998765411


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                                .+.+.+-. ..+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence                      13333322 469999999998763

>PRK06753 hypothetical protein; Provisional

Probab=98.36  E-value=2.8e-06  Score=82.35  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=71.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----cCCHHH---------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKI---------------------------------   85 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----~~~~~~---------------------------------   85 (358)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...    .+.+..                                 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6999999999999999999999999999987643110    000000                                 


Q ss_pred             ---------------HHHHHHHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           86 ---------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        86 ---------------~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                                     ...+.+.|.+  .+.++++++++++++.+ ++. ..+.+.+|+++.+|+||-|-|.++.+
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHH
Confidence                           1112333322  24678999999999864 333 45778899999999999999977654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.36  E-value=1.2e-06  Score=88.03  Aligned_cols=90  Identities=24%  Similarity=0.353  Sum_probs=69.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++++|||+|++|+++|..|++.|.+|+++++.+++.       +. .++.++.....+.+++.||++++++.+.. + 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D-  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence            35799999999999999999999999999999887652       21 14556666667788899999999987631 1 


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                              +. .+.....+|.|++|+|..
T Consensus       220 --------~~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 --------IS-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             --------cC-HHHHHhhCCEEEEccCCC
Confidence                    00 011235799999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.34  E-value=1.7e-06  Score=92.77  Aligned_cols=90  Identities=19%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  112 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~  112 (358)
                      +++|+|||||+.|+.+|..|++.|.+|||+++.+.+...        .++.+......+.+.+.||++++++.. .    
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence            579999999999999999999999999999987654221        123445555556778889999987421 0    


Q ss_pred             CCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          113 SNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       113 ~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                             +.+.+.+...+|.|++|+|..+.
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCCC
Confidence                   11223344668999999998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.34  E-value=6.7e-06  Score=80.84  Aligned_cols=101  Identities=18%  Similarity=0.350  Sum_probs=70.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc----Cc--cCC--------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----AR--LFT--------------------------------   82 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l----~~--~~~--------------------------------   82 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-    +.  .+.                                
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            4589999999999999999999999999999865321    00  000                                


Q ss_pred             -----------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCC-C--cEEecCeEEE
Q 018320           83 -----------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVV  135 (358)
Q Consensus        83 -----------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~  135 (358)
                                             ..+.+.+.+.+.+ .+|++++++++++++.++++  ..+.+.+ +  .++.+|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence                                   1112223333444 37999999999999764443  3355543 2  4699999999


Q ss_pred             eeCCCCCh
Q 018320          136 GIGIRPNT  143 (358)
Q Consensus       136 a~G~~p~~  143 (358)
                      |.|..+..
T Consensus       176 ADG~~S~v  183 (415)
T PRK07364        176 ADGARSPI  183 (415)
T ss_pred             eCCCCchh
Confidence            99987654

>PRK08013 oxidoreductase; Provisional

Probab=98.33  E-value=6.4e-06  Score=80.81  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=73.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--------c--cCCH----------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R--LFTP----------------------------   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--------~--~~~~----------------------------   83 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..        +  .+.+                            
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4799999999999999999999999999998654110        0  0000                            


Q ss_pred             ----------------------------HHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320           84 ----------------------------KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  134 (358)
Q Consensus        84 ----------------------------~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  134 (358)
                                                  .+.+.+.+.+.+. ||+++.++++++++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                                        1112233334443 7999999999999764444  45677889999999999


Q ss_pred             EeeCCCCCh
Q 018320          135 VGIGIRPNT  143 (358)
Q Consensus       135 ~a~G~~p~~  143 (358)
                      -|-|.++..
T Consensus       162 gADG~~S~v  170 (400)
T PRK08013        162 GADGANSWL  170 (400)
T ss_pred             EeCCCCcHH
Confidence            999987654

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.32  E-value=5.7e-06  Score=80.68  Aligned_cols=101  Identities=16%  Similarity=0.251  Sum_probs=72.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc--cc---C---c--cCCH-------------H--------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--CM---A---R--LFTP-------------K--------------   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~--~l---~---~--~~~~-------------~--------------   84 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.  +.   +   +  .+.+             .              
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            4799999999999999999999999999997641  00   0   0  0000             0              


Q ss_pred             ----------------------------HHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320           85 ----------------------------IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        85 ----------------------------~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                                                  +...+.+.+.+ .|++++.++++++++.++++  ..+.+.+|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence                                        00011122222 47999999999999875444  457888999999999999


Q ss_pred             eeCCCCChh
Q 018320          136 GIGIRPNTS  144 (358)
Q Consensus       136 a~G~~p~~~  144 (358)
                      |.|..+..-
T Consensus       162 ADG~~S~vR  170 (384)
T PRK08849        162 ADGANSQVR  170 (384)
T ss_pred             ecCCCchhH
Confidence            999887653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.32  E-value=1.4e-05  Score=79.55  Aligned_cols=138  Identities=24%  Similarity=0.309  Sum_probs=91.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCcccCc-----------------------cC--------CHHHHHH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMAR-----------------------LF--------TPKIASY   88 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~l~~-----------------------~~--------~~~~~~~   88 (358)
                      ..+|+|||||+.|+-+|..|.+.|.. +.++|+.+.+...                       .+        -+++..+
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            46899999999999999999999999 9999997533100                       01        0226777


Q ss_pred             HHHHHHhCCCE--EEcCCeeeEEEEcCCCcEEEEEcCCCcE--EecCeEEEeeCC--CCChhhhhcccccccCcEEEe--
Q 018320           89 YEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGI--RPNTSLFEGQLTLEKGGIKVT--  160 (358)
Q Consensus        89 ~~~~l~~~gV~--v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~--~p~~~l~~~~~~~~~g~i~vd--  160 (358)
                      +...+++.++.  +..++.|+.+..++++....|.++++.+  +.+|.||+|+|.  .|+..-+..... -.|.+.-.  
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~-f~g~~~HS~~  166 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDE-FKGRILHSAD  166 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccC-CCceEEchhc
Confidence            88888877654  4455666667666676677788888765  459999999995  344332222111 12222211  


Q ss_pred             --ccccCCCCcEEEEcccccc
Q 018320          161 --GRLQSSNSSVYAVGDVAAF  179 (358)
Q Consensus       161 --~~~~t~~~~VyAiGD~~~~  179 (358)
                        +...-.-++|-+||--++.
T Consensus       167 ~~~~~~~~GKrV~VIG~GaSA  187 (443)
T COG2072         167 WPNPEDLRGKRVLVIGAGASA  187 (443)
T ss_pred             CCCccccCCCeEEEECCCccH
Confidence              1223356789999976653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.31  E-value=8.8e-06  Score=81.52  Aligned_cols=100  Identities=24%  Similarity=0.348  Sum_probs=67.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc--------ccCc---------------------c--------CCH-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR---------------------L--------FTP-   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~--------~l~~---------------------~--------~~~-   83 (358)
                      ++++|||+|+.|+++|..++++|.+|+++++.+-        ..|.                     .        +|. 
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP   81 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence            5799999999999999999999999999998640        0000                     0        000 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEcCCCc--EEecCeEEEeeCCCCCh
Q 018320           84 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        84 ~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~  143 (358)
                      .           +.+.+.+.+++.||+++.+.. +.++. .++.. ..+.+.+|+  ++.+|.||+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~-v~V~~~~g~~~~~~~d~lViATGs~p~~  153 (466)
T PRK07845         82 AVNARVKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHR-VKVTTADGGEETLDADVVLIATGASPRI  153 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCE-EEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence            0           122344567778999998743 33221 02222 346666775  79999999999999863

>PRK07190 hypothetical protein; Provisional

Probab=98.30  E-value=7.6e-06  Score=82.39  Aligned_cols=99  Identities=19%  Similarity=0.370  Sum_probs=74.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC----------------------------------------cc-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------------RL-   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~----------------------------------------~~-   80 (358)
                      ..|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                                        .. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4799999999999999999999999999998643210                                        00 


Q ss_pred             ---------CC------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           81 ---------FT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        81 ---------~~------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                               ++            ..+...+.+.+++.|++++.++++++++.++++  ..+.+.+|+++.++.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence                     00            012233445667789999999999999875554  2345577889999999999998


Q ss_pred             CCC
Q 018320          140 RPN  142 (358)
Q Consensus       140 ~p~  142 (358)
                      ++.
T Consensus       164 ~S~  166 (487)
T PRK07190        164 RSF  166 (487)
T ss_pred             CHH
Confidence            653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.30  E-value=1.8e-06  Score=93.77  Aligned_cols=94  Identities=22%  Similarity=0.254  Sum_probs=69.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      ++++|+|||||+.|+.+|..|+++|.+|||+++.+.+..       . .++.++.....+.+++.||++++++.+.    
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----  504 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----  504 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC----
Confidence            358999999999999999999999999999998765522       1 1356777777888999999999986541    


Q ss_pred             cCCCcEEEEEcCCC-cEEecCeEEEeeCCC-CCh
Q 018320          112 DSNGKVVAVNLRDG-NRLPTDMVVVGIGIR-PNT  143 (358)
Q Consensus       112 ~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~-p~~  143 (358)
                       .     .+.+.+- +...+|.||+|||.. |..
T Consensus       505 -~-----~~~~~~l~~~~~yDaViIATGa~~pr~  532 (1006)
T PRK12775        505 -K-----TFTVPQLMNDKGFDAVFLGVGAGAPTF  532 (1006)
T ss_pred             -C-----ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence             1     1111111 124589999999984 543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.30  E-value=6.1e-06  Score=82.06  Aligned_cols=98  Identities=15%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-Ccc-----CCH-----------HH----------HHHH----H
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARL-----FTP-----------KI----------ASYY----E   90 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-~~~-----~~~-----------~~----------~~~~----~   90 (358)
                      -+++|||||+.|+.+|..|+++|.+|+|+++.+..+ ...     .+.           +.          .+.+    .
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF   83 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence            479999999999999999999999999999875321 100     000           00          0111    1


Q ss_pred             HHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeCCCCChh
Q 018320           91 EYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        91 ~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~  144 (358)
                      +.+.+ .||+++.+ ++..++   .+. ..+...++. ++.+|.+|+|||.+|...
T Consensus        84 ~~~~~~~gv~~~~g-~~~~i~---~~~-~~v~~~~g~~~~~~d~lviATGs~p~~p  134 (441)
T PRK08010         84 HNLADMPNIDVIDG-QAEFIN---NHS-LRVHRPEGNLEIHGEKIFINTGAQTVVP  134 (441)
T ss_pred             HHHhhcCCcEEEEE-EEEEec---CCE-EEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence            22333 48998876 344443   222 345556664 699999999999988654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.30  E-value=6.7e-06  Score=82.18  Aligned_cols=98  Identities=22%  Similarity=0.263  Sum_probs=67.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----CC------------------------------H-H-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FT------------------------------P-K-   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~~------------------------------~-~-   84 (358)
                      .+++|||||+.|+.+|..|+++|.+|+++++.+.+....     .+                              . + 
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL   85 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence            579999999999999999999999999999865432110     00                              0 0 


Q ss_pred             ----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320           85 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                                ..+.+.+.+++.||+++.+. +..++   .+. ..+...+|+  ++.+|.||+|||.+|...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~-~~v~~~~g~~~~~~~d~lviATGs~p~~p  152 (461)
T PRK05249         86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PHT-VEVECPDGEVETLTADKIVIATGSRPYRP  152 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CCE-EEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence                      11223345667899999774 33332   222 345555664  799999999999998643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.29  E-value=7e-06  Score=82.36  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCC-HH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PK   84 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~-~~   84 (358)
                      ..+++|||||+.|+.+|..|+++|.+|+|+++.. +...                                   .++ +.
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK   82 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            4589999999999999999999999999999852 2100                                   001 00


Q ss_pred             -----------HHHHHHHHHHhCCCEEEcCCeeeEEEEc---CCCcEEEEEcCCC--cEEecCeEEEeeCCCCCh
Q 018320           85 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVD---SNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        85 -----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~  143 (358)
                                 +.+.+.+.+++.||+++.+. ++.++..   ++.....+.+.+|  +++.+|.+|+|||.+|..
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~  156 (472)
T PRK05976         83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence                       11122344567799999874 4445321   0111245666676  579999999999999863

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.28  E-value=2.1e-06  Score=86.06  Aligned_cols=90  Identities=19%  Similarity=0.269  Sum_probs=68.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.....+.+.+.||++++++.+.. + 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            3579999999999999999999999999999998765321        13556666666778899999999976531 0 


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                              +.. +.....+|.|++|+|..
T Consensus       220 --------~~~-~~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        220 --------ITA-EELLAEYDAVFLGTGAY  239 (471)
T ss_pred             --------CCH-HHHHhhCCEEEEecCCC
Confidence                    000 11235799999999987

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.27  E-value=9e-06  Score=79.33  Aligned_cols=101  Identities=18%  Similarity=0.301  Sum_probs=73.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------------------------C---cc------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------A---RL------------   80 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------------------------~---~~------------   80 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+..-                         .   ..            
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            3589999999999999999999999999999864100                         0   00            


Q ss_pred             ----------CC---------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320           81 ----------FT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  134 (358)
Q Consensus        81 ----------~~---------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  134 (358)
                                ++               ..+.+.+.+.+.+. |++++.++++++++.++++  ..+.+.+|+++.+|.||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence                      00               01223334444555 9999999999999764443  35677788899999999


Q ss_pred             EeeCCCCCh
Q 018320          135 VGIGIRPNT  143 (358)
Q Consensus       135 ~a~G~~p~~  143 (358)
                      .|.|..+..
T Consensus       163 ~AdG~~S~v  171 (391)
T PRK08020        163 GADGANSQV  171 (391)
T ss_pred             EeCCCCchh
Confidence            999987753

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.27  E-value=1e-05  Score=78.82  Aligned_cols=97  Identities=20%  Similarity=0.296  Sum_probs=70.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------c----------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------L----------------------------------   80 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~----------------------------------   80 (358)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+...        .                                  
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            4899999999999999999999999999976532100        0                                  


Q ss_pred             -C-CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           81 -F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        81 -~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                       + ..++.+.+.+.+.+.|++++ ..+++.++.++ +....+.+.+|+++.++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0 01223444555667799887 55788887532 333457777888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.26  E-value=2.4e-06  Score=88.82  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------CccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||+|++|+.+|..|++.|++|+++++.+.+.        +..++.++.+...+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            47899999999999999999999999999999987642        1125667666667788999999999986521   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                        +     +.+.+ ....+|.|++++|..+.
T Consensus       386 --~-----~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 --D-----ITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence              1     11211 23468999999998643

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.26  E-value=9.4e-06  Score=78.92  Aligned_cols=98  Identities=14%  Similarity=0.250  Sum_probs=71.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC----cccC--c--cCC--------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA----HCMA--R--LFT--------------------------------   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~----~~l~--~--~~~--------------------------------   82 (358)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+    .+.+  +  .+.                                
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            69999999999999999999999999999752    1000  0  000                                


Q ss_pred             ---------------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           83 ---------------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        83 ---------------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                                           .++.+.+.+.+.+. +++++.+++++++..++++  ..+.+.++ ++.+|+||.|-|.+
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence                                 12233344445554 4899999999999764443  34677666 89999999999987


Q ss_pred             CCh
Q 018320          141 PNT  143 (358)
Q Consensus       141 p~~  143 (358)
                      +..
T Consensus       160 S~v  162 (374)
T PRK06617        160 SKV  162 (374)
T ss_pred             chh
Confidence            665

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.26  E-value=4.1e-06  Score=84.24  Aligned_cols=82  Identities=26%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      ++++++|||+|.+|+++|..|.++|.+|+++++.+.        +....+.+.|++.||+++++..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            478999999999999999999999999999987542        233445667888999999875432            


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                            ....+|+||+++|..|+.+++.
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHHH
Confidence                  1245899999999999998754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.26  E-value=1.3e-05  Score=81.84  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=73.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      ..+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+.+.                                         
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            468999999999999999999999999999986532100                                         


Q ss_pred             ---cCC-----------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcC--CC--cEEecCeEE
Q 018320           80 ---LFT-----------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVV  134 (358)
Q Consensus        80 ---~~~-----------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi  134 (358)
                         .++                 +++.+.+.+.+.+ .|++++.++++++++.++++.  .+++.  +|  +++.+|.||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence               000                 1122333444444 489999999999998755552  34443  56  479999999


Q ss_pred             EeeCCCCCh
Q 018320          135 VGIGIRPNT  143 (358)
Q Consensus       135 ~a~G~~p~~  143 (358)
                      -|.|.++..
T Consensus       168 gADG~~S~v  176 (538)
T PRK06183        168 GCDGANSFV  176 (538)
T ss_pred             ecCCCchhH
Confidence            999987655

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.26  E-value=1.2e-05  Score=82.18  Aligned_cols=103  Identities=18%  Similarity=0.290  Sum_probs=73.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------c------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------   80 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~------   80 (358)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...                                  .      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            358999999999999999999999999999986532100                                  0      


Q ss_pred             -------------------C-CHHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeC
Q 018320           81 -------------------F-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG  138 (358)
Q Consensus        81 -------------------~-~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G  138 (358)
                                         + ...+...+.+.+.+. ++++++++++++++.++++....++..++. ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               0 011223344445443 799999999999987555433334444554 699999999999


Q ss_pred             CCCCh
Q 018320          139 IRPNT  143 (358)
Q Consensus       139 ~~p~~  143 (358)
                      .++..
T Consensus       183 ~~S~v  187 (547)
T PRK08132        183 ARSPL  187 (547)
T ss_pred             CCcHH
Confidence            87764

>PLN02697 lycopene epsilon cyclase

Probab=98.25  E-value=1e-05  Score=81.89  Aligned_cols=98  Identities=21%  Similarity=0.288  Sum_probs=71.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------------------------------   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------------------------------   80 (358)
                      -+|+|||||+.|+.+|..|++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            479999999999999999999999999998753221110                                         


Q ss_pred             CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           81 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        81 ~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ++ ..+.+.+.+.+.+.|+++ .+++|++++.++++ +..+.+.+|.++.++.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence            00 112244455556779998 56789999764333 3334567888999999999999876

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.25  E-value=1.1e-05  Score=80.94  Aligned_cols=96  Identities=20%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----C------------------------------C-HHH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----F------------------------------T-PKI   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~------------------------------~-~~~   85 (358)
                      .+++|||||+.|+.+|..++++|.+|+|+++.+.+....     +                              | +.+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM   84 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence            579999999999999999999999999999865432110     0                              0 011


Q ss_pred             H-----------HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCC
Q 018320           86 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        86 ~-----------~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~  142 (358)
                      .           ..+...+++.||+++.+.. .-+   +... ..+...+|  .++.+|.+|+|||.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a-~~~---~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLG-KFT---GGNT-LEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc---cCCE-EEEecCCCceEEEEcCEEEEeCCCCCC
Confidence            1           1112345667999997642 222   2222 34555566  47999999999999986

>PRK10015 oxidoreductase; Provisional

Probab=98.24  E-value=1.4e-05  Score=79.29  Aligned_cols=98  Identities=17%  Similarity=0.323  Sum_probs=71.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc------------------Ccc-----------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARL-----------------------   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l------------------~~~-----------------------   80 (358)
                      -.|+|||||+.|+-+|..|++.|.+|+++|+.+.+.                  +.+                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            479999999999999999999999999999865321                  100                       


Q ss_pred             --CC------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           81 --FT------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        81 --~~------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                        ++                  ..+-..+.+..++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence              00                  01122345556678999999999999875 3455544443 45679999999999975


Q ss_pred             C
Q 018320          141 P  141 (358)
Q Consensus       141 p  141 (358)
                      +
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.24  E-value=1.4e-05  Score=78.51  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=72.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-Cccc------Cc--cCCH----------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM------AR--LFTP----------------------------   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~l------~~--~~~~----------------------------   83 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+. +...      .+  .+.+                            
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            358999999999999999999999999999985 2100      00  0000                            


Q ss_pred             ----------------------------HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320           84 ----------------------------KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  134 (358)
Q Consensus        84 ----------------------------~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi  134 (358)
                                                  .+...+.+.+.+ .||+++.++++++++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence                                        011222333333 47999999999999764443  45778899999999999


Q ss_pred             EeeCCCCCh
Q 018320          135 VGIGIRPNT  143 (358)
Q Consensus       135 ~a~G~~p~~  143 (358)
                      .|.|..+..
T Consensus       162 gADG~~S~v  170 (405)
T PRK08850        162 GADGANSWL  170 (405)
T ss_pred             EeCCCCChh
Confidence            999976644

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.23  E-value=1.4e-05  Score=78.49  Aligned_cols=100  Identities=15%  Similarity=0.268  Sum_probs=70.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------   79 (358)
                      ++|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                                          
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            68999999999999999999999999999986532000                                          


Q ss_pred             -cCC--------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCcEEecCeEE
Q 018320           80 -LFT--------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV  134 (358)
Q Consensus        80 -~~~--------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi  134 (358)
                       .+.                    .++.+.+.+.+.+ .++++++++++++++.++++  ..+++   .+++++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence             000                    0112223333433 47999999999999864333  23433   344679999999


Q ss_pred             EeeCCCCCh
Q 018320          135 VGIGIRPNT  143 (358)
Q Consensus       135 ~a~G~~p~~  143 (358)
                      -|-|.++..
T Consensus       161 gADG~~S~v  169 (400)
T PRK06475        161 ACDGVWSML  169 (400)
T ss_pred             ECCCccHhH
Confidence            999977544

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.23  E-value=1.1e-05  Score=80.70  Aligned_cols=96  Identities=22%  Similarity=0.289  Sum_probs=65.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCC-HHH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PKI   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~-~~~   85 (358)
                      -+++|||||+.|+.+|..++++|.+|+|+++.+ +...                                   .++ .++
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV   83 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence            479999999999999999999999999999864 2110                                   001 111


Q ss_pred             HHH-----------HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEEEeeCCCCCh
Q 018320           86 ASY-----------YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        86 ~~~-----------~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~  143 (358)
                      .++           +...+++.||+++.++ ++.++   ... ..+...+ ++++.+|.||+|||.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~---~~~-~~v~~~~~~~~~~~d~lViAtGs~p~~  148 (462)
T PRK06416         84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD---PNT-VRVMTEDGEQTYTAKNIILATGSRPRE  148 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCE-EEEecCCCcEEEEeCEEEEeCCCCCCC
Confidence            111           3345667899999874 33332   222 2344333 4679999999999999863

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.21  E-value=1.4e-05  Score=78.31  Aligned_cols=100  Identities=20%  Similarity=0.320  Sum_probs=75.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------CC----------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT----------------------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------~~----------------------   82 (358)
                      -.|+|||+|+.|+.+|..|++.|.+|.++|+.+.+..+.                 ..                      
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            479999999999999999999999999999965441110                 01                      


Q ss_pred             -----------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           83 -----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        83 -----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                                 ...-+.+.+..++.|++++.++++..+..++++.+..+. .++.++.++.||.|.|.+..
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCcchH
Confidence                       112234555667789999999999999886656544443 34478999999999997644

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.20  E-value=1.1e-05  Score=80.59  Aligned_cols=94  Identities=20%  Similarity=0.388  Sum_probs=66.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------------CC-H-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FT-P-   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~-   83 (358)
                      -.++|||||+.|+.+|..++++|.+|+|+|+.. +....                                    ++ + 
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE   81 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence            479999999999999999999999999999842 11100                                    01 0 


Q ss_pred             ----------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           84 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                .+.+.+...+++.||+++.++..  +.  ++..   +.. +++++.+|.+|+|||.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~~---v~v-~~~~~~~d~vIiAtGs~p~~p  144 (450)
T TIGR01421        82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDGT---VEV-NGRDYTAPHILIATGGKPSFP  144 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCCE---EEE-CCEEEEeCEEEEecCCCCCCC
Confidence                      11223445677789999988643  22  2332   333 567899999999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.19  E-value=2.2e-05  Score=76.55  Aligned_cols=100  Identities=25%  Similarity=0.282  Sum_probs=71.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                                         
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            357999999999999999999999999999986432000                                         


Q ss_pred             ------cCC---------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320           80 ------LFT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        80 ------~~~---------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                            .++               ..+.+.+.+.+.+. ++. +.+++|++++.++++  ..+++++|+++.+|.||.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad  163 (388)
T PRK07494         87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD  163 (388)
T ss_pred             CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence                  000               11223334445554 466 779999999764443  34777888899999999999


Q ss_pred             CCCCCh
Q 018320          138 GIRPNT  143 (358)
Q Consensus       138 G~~p~~  143 (358)
                      |..+..
T Consensus       164 G~~S~v  169 (388)
T PRK07494        164 GRNSPV  169 (388)
T ss_pred             CCCchh
Confidence            987643

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.19  E-value=1.6e-05  Score=81.16  Aligned_cols=96  Identities=21%  Similarity=0.272  Sum_probs=69.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC-ccc--C---c------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCM--A---R------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~-~~l--~---~------------------------------------   79 (358)
                      -.|+|||||+.|+++|..+++.|.+|.++++.. .+.  +   .                                    
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            479999999999999999999999999999863 110  0   0                                    


Q ss_pred             -----------cCCHH-HHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           80 -----------LFTPK-IASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        80 -----------~~~~~-~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                                 .+|.. ....+.+.+.+. |++++ ...++++.. +++.+..|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                       00100 123333444444 88886 556788765 466777888899999999999999994

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.19  E-value=3.5e-05  Score=76.25  Aligned_cols=138  Identities=21%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc----------------------------------------Ccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------ARL   80 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l----------------------------------------~~~   80 (358)
                      .++++|||+|++||-.|..|.+.|.+|+++||.+.+.                                        ++.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence            6899999999999999999999999999999976441                                        000


Q ss_pred             -CC-HHHHHHHHHHHHhCCC--EEEcCCeeeEEEEcCCCcEEEEEcCCC----cEEecCeEEEeeCCC--CChhhhhcc-
Q 018320           81 -FT-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIR--PNTSLFEGQ-  149 (358)
Q Consensus        81 -~~-~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~--p~~~l~~~~-  149 (358)
                       .+ .++.++++.+.+..++  .+.+++.+.+++...+|+- .|.+.+.    ++.-+|.|++|+|..  |+....... 
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~  164 (448)
T KOG1399|consen   86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG  164 (448)
T ss_pred             CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence             01 1466677777776665  6777888888876443432 3444332    367799999999976  666554432 


Q ss_pred             ccc-ccCcEEEeccccC---CCCcEEEEcccccc
Q 018320          150 LTL-EKGGIKVTGRLQS---SNSSVYAVGDVAAF  179 (358)
Q Consensus       150 ~~~-~~g~i~vd~~~~t---~~~~VyAiGD~~~~  179 (358)
                      ++. .+..|-.-++-..   ....|.+||--.+.
T Consensus       165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG  198 (448)
T KOG1399|consen  165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSG  198 (448)
T ss_pred             hhhcCCcceehhhccCcccccCceEEEECCCccH
Confidence            222 3222322222211   35789999966554

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.18  E-value=7.4e-06  Score=81.34  Aligned_cols=92  Identities=12%  Similarity=0.158  Sum_probs=61.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHH-HhCCCcEEEEeeCCcccCcc------CCH---HHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           40 SGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARL------FTP---KIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L-~~~g~~Vtlv~~~~~~l~~~------~~~---~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      .+++|+|||+|+.|+.+|..| ++.|++|+|+++.+.+..-.      ..+   .+...+...+...+++++.+..+-. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            478999999999999999975 46799999999998764210      112   3344445556667888885443311 


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                               .+...+ -.-.+|.||+|+|..+.
T Consensus       117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKMEE-LRNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence                     111111 12368999999998754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.16  E-value=5.4e-06  Score=86.49  Aligned_cols=91  Identities=22%  Similarity=0.332  Sum_probs=67.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.       +. .++.++.....+.+++.||++++++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            46899999999999999999999999999999876642       11 13556666666778889999999986521   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                        +     +.+.+ ....+|.|++++|..+
T Consensus       403 --~-----i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        403 --D-----ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence              0     11111 1236999999999754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.16  E-value=2.1e-05  Score=85.66  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=71.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc---------C-CHHHHHHHHHHHHhC-CCEEEcCCeeeEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---------F-TPKIASYYEEYYKSK-GVKFVKGTVLSSF  109 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~---------~-~~~~~~~~~~~l~~~-gV~v~~~~~v~~i  109 (358)
                      .++|+|||||+.|+.+|..+++.|.+|+|+++.+.+....         . ..+....+.+.+++. +|+++++++|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            4689999999999999999999999999999876553211         1 123334455566655 5999999999887


Q ss_pred             EEcCCCcEEEEE-cC-------CC------cEEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVN-LR-------DG------NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~-~~-------~g------~~i~~D~vi~a~G~~p~~~  144 (358)
                      ..  ++.+..+. ..       ++      .++.+|.||+|||.+|...
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~  289 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL  289 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence            52  22222111 00       11      2689999999999887643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.15  E-value=7.9e-06  Score=80.24  Aligned_cols=36  Identities=28%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +|+|||||.+|+|+|..|+++|.+|+|+++.+..+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            699999999999999999999999999998776533

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.15  E-value=1.2e-05  Score=79.13  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=69.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccCcc----CCH-------------HH-------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARL----FTP-------------KI-------------------   85 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~~~----~~~-------------~~-------------------   85 (358)
                      +|+|||||+.|+-+|..|++.| .+|+|+|+.+.+.+..    +.+             .+                   
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 5999999976531100    000             00                   


Q ss_pred             ----------------------HHHHHHHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           86 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        86 ----------------------~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                                            ...+.+.|.+  .++.++.+++|++++.++++  ..+.+.+|+++.+|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                  1112222322  14567889999999874444  467788999999999999999765


Q ss_pred             C
Q 018320          142 N  142 (358)
Q Consensus       142 ~  142 (358)
                      .
T Consensus       160 ~  160 (414)
T TIGR03219       160 A  160 (414)
T ss_pred             H
Confidence            4

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.15  E-value=6.4e-06  Score=85.85  Aligned_cols=92  Identities=22%  Similarity=0.302  Sum_probs=68.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||+|++|+.+|..|++.|.+||++++.+.+.       +. .++.++.+...+.+.+.|+++++++.+. .+ 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d-  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD-  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence            46799999999999999999999999999999887641       21 1355666666677888999999887541 11 


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                              +.+.+. ...+|.||+|+|..+.
T Consensus       270 --------v~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        270 --------ITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence                    112111 2359999999998753

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.14  E-value=2e-05  Score=79.02  Aligned_cols=96  Identities=26%  Similarity=0.371  Sum_probs=63.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----CCH-----------------------------HHH-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTP-----------------------------KIA-   86 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~~~-----------------------------~~~-   86 (358)
                      -+++|||+|+.|+.+|..+++.|.+|+|+++.+.+....     .+.                             ++. 
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   83 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ   83 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence            479999999999999999999999999999743322110     000                             000 


Q ss_pred             -------------HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCC
Q 018320           87 -------------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPN  142 (358)
Q Consensus        87 -------------~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~  142 (358)
                                   ..+...+++.||+++.+.  .++.  ++.++ .+...+|+  ++.+|.+|+|||.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~--~~~~v-~v~~~~g~~~~~~~d~lVIATGs~p~  149 (466)
T PRK06115         84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLD--GVGKV-VVKAEDGSETQLEAKDIVIATGSEPT  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEc--cCCEE-EEEcCCCceEEEEeCEEEEeCCCCCC
Confidence                         112223445678777664  2443  23332 35555664  6999999999999985

>PRK06185 hypothetical protein; Provisional

Probab=98.12  E-value=4e-05  Score=75.20  Aligned_cols=101  Identities=21%  Similarity=0.327  Sum_probs=71.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                                         
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            468999999999999999999999999999986421000                                         


Q ss_pred             ---c--C--------------CHHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEE--EEcCCCc-EEecCeEEEe
Q 018320           80 ---L--F--------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVA--VNLRDGN-RLPTDMVVVG  136 (358)
Q Consensus        80 ---~--~--------------~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~--v~~~~g~-~i~~D~vi~a  136 (358)
                         .  +              ...+.+.+.+.+.+ .|++++.++++++++.+ ++.+..  +...+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence               0  0              01122333344444 48999999999999863 444433  3345664 7999999999


Q ss_pred             eCCCCC
Q 018320          137 IGIRPN  142 (358)
Q Consensus       137 ~G~~p~  142 (358)
                      .|....
T Consensus       165 dG~~S~  170 (407)
T PRK06185        165 DGRHSR  170 (407)
T ss_pred             CCCchH
Confidence            997754

>TIGR00275 flavoprotein, HI0933 family

Probab=98.12  E-value=2.5e-05  Score=76.78  Aligned_cols=94  Identities=19%  Similarity=0.335  Sum_probs=69.4

Q ss_pred             EEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc----------------------C---------------------
Q 018320           45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------F---------------------   81 (358)
Q Consensus        45 vVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------~---------------------   81 (358)
                      +|||||+.|+-+|..+++.|.+|+|+|+.+.+..+.                      .                     
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            589999999999999999999999999865432100                      0                     


Q ss_pred             -----------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320           82 -----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        82 -----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  138 (358)
                                             ..++.+.+.+.+++.|+++++++.+++++.+ ++. ..+++ ++.++.+|.||+|+|
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence                                   0122334455667789999999999999763 332 34555 566899999999999


Q ss_pred             CCC
Q 018320          139 IRP  141 (358)
Q Consensus       139 ~~p  141 (358)
                      ..+
T Consensus       158 ~~s  160 (400)
T TIGR00275       158 GLS  160 (400)
T ss_pred             Ccc
Confidence            754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.10  E-value=4.2e-05  Score=74.85  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--Cc----------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--~~----------------------------------------   79 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+...  ..                                        
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            579999999999999999999999999999876310  00                                        


Q ss_pred             ----cC-------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEc-CCCc--EEecCeEEEeeC
Q 018320           80 ----LF-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNL-RDGN--RLPTDMVVVGIG  138 (358)
Q Consensus        80 ----~~-------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~-~~g~--~i~~D~vi~a~G  138 (358)
                          .+             .+++.+.+.+...+.|+++++++++++++. ++++  ..+.+ .+|+  ++.+|+||-|-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG  160 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG  160 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence                00             012223333444567999999999999875 2333  34555 4664  689999999999


Q ss_pred             CCCCh
Q 018320          139 IRPNT  143 (358)
Q Consensus       139 ~~p~~  143 (358)
                      .+...
T Consensus       161 ~~S~v  165 (392)
T PRK08243        161 FHGVS  165 (392)
T ss_pred             CCCch
Confidence            87654

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.09  E-value=3.8e-05  Score=74.87  Aligned_cols=99  Identities=18%  Similarity=0.270  Sum_probs=71.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCC-c--ccCc------cCC---------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEA-H--CMAR------LFT---------------------------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~-~--~l~~------~~~---------------------------   82 (358)
                      -+|+|||||+.|+-+|..|++.   |.+|+|+|+.. .  ..+.      .+.                           
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4799999999999999999998   99999999841 1  0000      000                           


Q ss_pred             ----------------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeE
Q 018320           83 ----------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV  133 (358)
Q Consensus        83 ----------------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v  133 (358)
                                                  .++.+.+.+.+.+ .|++++.++++++++.++++  ..+.+.+|.++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                                        0112233334444 47999999999999763333  3477778888999999


Q ss_pred             EEeeCCCCC
Q 018320          134 VVGIGIRPN  142 (358)
Q Consensus       134 i~a~G~~p~  142 (358)
                      |.|.|..+.
T Consensus       162 I~AdG~~S~  170 (395)
T PRK05732        162 VAADGSHSA  170 (395)
T ss_pred             EEecCCChh
Confidence            999998764

>PRK06370 mercuric reductase; Validated

Probab=98.08  E-value=1.5e-05  Score=79.79  Aligned_cols=94  Identities=20%  Similarity=0.238  Sum_probs=64.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cCCH-H
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP-K   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~~~-~   84 (358)
                      .+++|||+|+.|+.+|..++++|.+|+|+++.+ +...                                    .++- +
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKA   84 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHH
Confidence            589999999999999999999999999999852 1000                                    0111 1


Q ss_pred             HH-----------HHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           85 IA-----------SYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ~~-----------~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +.           ..+...+++. ||+++.++.+. +   +..   .++. +++++.+|.+|+|||.+|...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~---~~~---~v~v-~~~~~~~d~lViATGs~p~~p  148 (463)
T PRK06370         85 VMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-E---SPN---TVRV-GGETLRAKRIFINTGARAAIP  148 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-c---cCC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence            11           2233455666 99999886541 1   222   2333 466899999999999998754

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.07  E-value=3.5e-06  Score=83.47  Aligned_cols=96  Identities=19%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------------   79 (358)
                      .|||||||+.|+-+|..+++.|.+|.|||+.+.+...                                           
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            4899999999999999999999999999997654100                                           


Q ss_pred             -----cCCHHH-HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---CcEEecCeEEEeeCC
Q 018320           80 -----LFTPKI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GNRLPTDMVVVGIGI  139 (358)
Q Consensus        80 -----~~~~~~-~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~~i~~D~vi~a~G~  139 (358)
                           .++++. ...+.+.+++.||++++++.+.++.. +++++..|.+.+   ..++.++.+|=|+|.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                 122222 22344566678999999999999987 456777887765   467999999999993

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.07  E-value=4.7e-05  Score=75.66  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=73.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHh----CCCcEEEEeeCC--ccc------------Cc-------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVI----NKINVTMVFPEA--HCM------------AR-------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~----~g~~Vtlv~~~~--~~l------------~~-------------------------   79 (358)
                      +|+|||||++|+-+|..|++    .|.+|+|+|+.+  ...            ++                         
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            59999999999999999998    799999999832  210            00                         


Q ss_pred             ------------------cCC--------------HHHHHHHHHHHHhC---CCEEEcCCeeeEEEEc-----CCCcEEE
Q 018320           80 ------------------LFT--------------PKIASYYEEYYKSK---GVKFVKGTVLSSFDVD-----SNGKVVA  119 (358)
Q Consensus        80 ------------------~~~--------------~~~~~~~~~~l~~~---gV~v~~~~~v~~i~~~-----~~g~v~~  119 (358)
                                        .++              ..+...+.+.+.+.   +++++.++++++++.+     +++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                              000              11223344455555   4999999999999641     1222356


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +++.+|+++.+|+||-|-|.++..-
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCChhH
Confidence            7888999999999999999876653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR02053 MerA mercuric reductase

Probab=98.05  E-value=3e-05  Score=77.63  Aligned_cols=94  Identities=20%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc----------------------------------CC------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------------FT------   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------------------~~------   82 (358)
                      .++|||+|+.|+.+|..++++|.+|+|+++.+ +....                                  ++      
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   80 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE   80 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence            58999999999999999999999999999853 21110                                  00      


Q ss_pred             --HHHHHH-----HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCChh
Q 018320           83 --PKIASY-----YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        83 --~~~~~~-----~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~  144 (358)
                        .++...     +.+.+++.||+++.++. ..+   +..   .+.+.+| +.+.+|.+|+|||.+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~-~~~---~~~---~v~v~~g~~~~~~~~lIiATGs~p~~p  143 (463)
T TIGR02053        81 GKREVVEELRHEKYEDVLSSYGVDYLRGRA-RFK---DPK---TVKVDLGREVRGAKRFLIATGARPAIP  143 (463)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCCcEEEEEEE-EEc---cCC---EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence              011111     23456778999987643 222   222   3445555 3688999999999998754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.05  E-value=5.2e-05  Score=74.19  Aligned_cols=50  Identities=16%  Similarity=0.321  Sum_probs=37.3

Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      .+.+++.|++++.++.|++++.++ +.+ .+.+.+| ++.+|.||+|+|..+.
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~  205 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD  205 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH
Confidence            344456799999999999997633 333 4666666 7999999999997653

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.05  E-value=7.4e-05  Score=75.67  Aligned_cols=106  Identities=15%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------------------------------cCCH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFTP   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~~   83 (358)
                      -.|||||+|..|+-+|..+++.|.+|+|+|+.+.+...                                      ..++
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~  141 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK  141 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            47999999999999999999999999999986532100                                      0001


Q ss_pred             -------------------------------------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC
Q 018320           84 -------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  114 (358)
Q Consensus        84 -------------------------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~  114 (358)
                                                                       .+...+.+.+++.||++++++.++++.. ++
T Consensus       142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~  220 (506)
T PRK06481        142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE-KD  220 (506)
T ss_pred             HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cC
Confidence                                                             1223445556678999999999999976 45


Q ss_pred             CcEEEEEc--CCC--cEEecCeEEEeeC-CCCChhhhhc
Q 018320          115 GKVVAVNL--RDG--NRLPTDMVVVGIG-IRPNTSLFEG  148 (358)
Q Consensus       115 g~v~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~l~~~  148 (358)
                      +++..+..  .++  .++.++.||+|+| +.+|.+++..
T Consensus       221 g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        221 GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            76655554  333  3588999999998 7777777654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.04  E-value=5.8e-05  Score=74.00  Aligned_cols=56  Identities=21%  Similarity=0.395  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE-EecCeEEEeeCCCCC
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPN  142 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~  142 (358)
                      ...+.+.+.++|++++++++|+.|+..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus       156 t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad  212 (429)
T COG0579         156 TRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD  212 (429)
T ss_pred             HHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence            444566777889999999999999986665 55677788876 999999999997544

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.04  E-value=7.5e-05  Score=74.17  Aligned_cols=105  Identities=20%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccCc--------------------------------------cCC-
Q 018320           43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------------------------------------LFT-   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~~--------------------------------------~~~-   82 (358)
                      .|||||+|..|+-+|..+++.| .+|+|+|+.+.....                                      ..+ 
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            4899999999999999999999 999999986432100                                      001 


Q ss_pred             -------------------------------------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcC
Q 018320           83 -------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDS  113 (358)
Q Consensus        83 -------------------------------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~  113 (358)
                                                                       .++...+.+.+++.|+++++++.++++..++
T Consensus        81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~  160 (439)
T TIGR01813        81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD  160 (439)
T ss_pred             HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence                                                             1123344455667899999999999998755


Q ss_pred             CCcEEEEEcC--CCc--EEecCeEEEeeC-CCCChhhhh
Q 018320          114 NGKVVAVNLR--DGN--RLPTDMVVVGIG-IRPNTSLFE  147 (358)
Q Consensus       114 ~g~v~~v~~~--~g~--~i~~D~vi~a~G-~~p~~~l~~  147 (358)
                      ++++..++..  +++  .+.++.||+|+| ...|.++.+
T Consensus       161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             CCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            6666655543  343  478999999999 555666554

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=98.01  E-value=0.00011  Score=55.86  Aligned_cols=73  Identities=25%  Similarity=0.342  Sum_probs=58.1

Q ss_pred             eEEEEecCceEEEeeccc--ceEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHh
Q 018320          221 FFYSRVFTLSWQFYGDNV--GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       221 ~~~~~~~~~~~~~~G~~~--~~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      +||+.+|+.+++++|...  .+.+..|+.+..+|..++.++|+++|+..+|. +.++..+..+|+.+..++ ...|.
T Consensus         1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~~-~~~l~   75 (85)
T PF14759_consen    1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARVD-PARLA   75 (85)
T ss_dssp             EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHHH
T ss_pred             CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCcC-HHHhc
Confidence            689999999999999754  46778888777779889999999999999994 778888899999998775 45554

...

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.01  E-value=7e-05  Score=76.36  Aligned_cols=98  Identities=15%  Similarity=0.264  Sum_probs=71.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc------------------Cc-------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR-------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l------------------~~-------------------------   79 (358)
                      .|+|||+|++|+++|..+++.|.+|+++++.....                  ..                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            58999999999999999999999999999753110                  00                         


Q ss_pred             ----------cCCH-HHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           80 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        80 ----------~~~~-~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                                .+|. .....+.+.+++. +++++.+ .++++..++++.+..|.+.+|..+.||.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                      0011 1123444556655 7888755 6667654336677889999999999999999999764

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.00  E-value=2.9e-05  Score=75.52  Aligned_cols=94  Identities=18%  Similarity=0.305  Sum_probs=64.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCc--------cCCHHHHH-------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR--------LFTPKIAS-------------------------   87 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~--------~~~~~~~~-------------------------   87 (358)
                      .++|||||+.|+.+|..|++.  |.+|.++++.+.+.+.        .+++....                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            489999999999999999987  9999999998744321        01111111                         


Q ss_pred             ---------HHHHH-HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           88 ---------YYEEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        88 ---------~~~~~-l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                               .+.+. +++.+..++++++|++++  .++    +.+.+|+++.+|.||.|.|.++.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~----v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG----VDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE----EEECCCCEEEeeEEEECCCCCCC
Confidence                     11122 222244477788888884  332    44578999999999999998764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.00  E-value=2.3e-05  Score=76.32  Aligned_cols=99  Identities=22%  Similarity=0.357  Sum_probs=76.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccC------cc---CCHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMA------RL---FTPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~------~~---~~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      .++++|||+|+.|.-+++.+.+.|.  +++++.++..+..      ..   ..........+.+++.||++++++.|+++
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~  153 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA  153 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence            5799999999999999999999876  6788776543211      10   12233444456789999999999999999


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      +- .+   ..+.+.+|+.+++|.+++|||..|++
T Consensus       154 D~-~~---K~l~~~~Ge~~kys~LilATGs~~~~  183 (478)
T KOG1336|consen  154 DL-AS---KTLVLGNGETLKYSKLIIATGSSAKT  183 (478)
T ss_pred             ec-cc---cEEEeCCCceeecceEEEeecCcccc
Confidence            75 22   36788999999999999999996654

>PRK07538 hypothetical protein; Provisional

Probab=98.00  E-value=5.9e-05  Score=74.27  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------CC-----------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT-----------------------   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------~~-----------------------   82 (358)
                      +|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+..                 +.                       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            69999999999999999999999999999875431100                 00                       


Q ss_pred             --------------------HHHHHHHHHHHHh-CC-CEEEcCCeeeEEEEcCCCcEEEEEcC-C--CcEEecCeEEEee
Q 018320           83 --------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLR-D--GNRLPTDMVVVGI  137 (358)
Q Consensus        83 --------------------~~~~~~~~~~l~~-~g-V~v~~~~~v~~i~~~~~g~v~~v~~~-~--g~~i~~D~vi~a~  137 (358)
                                          .++.+.+.+.+.+ .| +++++++++++++.++++.+..+... +  ++++.+|+||-|-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD  161 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD  161 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence                                0111222333333 35 57999999999987555533222221 1  2489999999999


Q ss_pred             CCCCCh
Q 018320          138 GIRPNT  143 (358)
Q Consensus       138 G~~p~~  143 (358)
                      |.++..
T Consensus       162 G~~S~v  167 (413)
T PRK07538        162 GIHSAV  167 (413)
T ss_pred             CCCHHH
Confidence            976543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.99  E-value=0.00019  Score=70.33  Aligned_cols=145  Identities=17%  Similarity=0.208  Sum_probs=99.2

Q ss_pred             HHHHHHHh-CCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecC
Q 018320           55 ECAASLVI-NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTD  131 (358)
Q Consensus        55 e~A~~L~~-~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D  131 (358)
                      ++-..|.+ .|+.|.-+--.   -|......+.+.+.+.+++.|++++.+++|.+++. +++++..+.+.++  .++.+|
T Consensus       237 ~~~~~L~~~~g~~v~E~ptl---PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD  312 (419)
T TIGR03378       237 ELLRELEQATGLTLCELPTM---PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRAD  312 (419)
T ss_pred             HHHHHHHHHHCCCEEeCCCC---CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECC
Confidence            33344443 47777665332   23345678888899999999999999999999886 4555666666665  479999


Q ss_pred             eEEEeeCCC-CChhhhh------c-----cc-------cc-----------ccCcEEEeccccC-----CCCcEEEEccc
Q 018320          132 MVVVGIGIR-PNTSLFE------G-----QL-------TL-----------EKGGIKVTGRLQS-----SNSSVYAVGDV  176 (358)
Q Consensus       132 ~vi~a~G~~-p~~~l~~------~-----~~-------~~-----------~~g~i~vd~~~~t-----~~~~VyAiGD~  176 (358)
                      .+|+|+|.- +. .+..      +     .+       .+           ..-+|.+|+++|.     ..+|+||+|-+
T Consensus       313 ~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~v  391 (419)
T TIGR03378       313 HFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAV  391 (419)
T ss_pred             EEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechh
Confidence            999999976 32 2111      0     01       00           1235889999983     37899999999


Q ss_pred             ccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          177 AAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       177 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      ....+++...    .-...|+..|..||++|+
T Consensus       392 L~G~d~~~~g----cG~GVai~Ta~~aa~~i~  419 (419)
T TIGR03378       392 LGGYDPIFEG----CGSGVAVSTALHAAEQII  419 (419)
T ss_pred             hcCCChHhcC----CCchhHHHHHHHHHHhhC
Confidence            9988764311    123467888888988873

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06996 hypothetical protein; Provisional

Probab=97.99  E-value=5.9e-05  Score=73.95  Aligned_cols=98  Identities=15%  Similarity=0.243  Sum_probs=72.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC----CcEEEEeeCCcccC----c---------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA----R---------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g----~~Vtlv~~~~~~l~----~---------------------------------   79 (358)
                      ..+|+|||||+.|+-+|..|++.|    .+|+++|+.+..-+    +                                 
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            468999999999999999999987    47999998531100    0                                 


Q ss_pred             -c-------------------C-CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC---cEEecCeEEE
Q 018320           80 -L-------------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVV  135 (358)
Q Consensus        80 -~-------------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~  135 (358)
                       .                   + -.++.+.+.+.+++.|++++.++++++++.++++  ..+.+.++   +++.+|+||-
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg  168 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ  168 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence             0                   0 0234555667777889999999999999764444  34666654   5899999999


Q ss_pred             eeCCC
Q 018320          136 GIGIR  140 (358)
Q Consensus       136 a~G~~  140 (358)
                      |.|..
T Consensus       169 ADG~~  173 (398)
T PRK06996        169 AEGGL  173 (398)
T ss_pred             CCCCC
Confidence            99964

>PRK14694 putative mercuric reductase; Provisional

Probab=97.99  E-value=6.8e-05  Score=75.21  Aligned_cols=100  Identities=21%  Similarity=0.288  Sum_probs=66.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc--------------------------ccC---cc------CCH-H
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------------------------CMA---RL------FTP-K   84 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~--------------------------~l~---~~------~~~-~   84 (358)
                      .-+++|||||+.|+.+|..|++.|.+|+++++..-                          -.+   ..      ++. +
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   85 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRSA   85 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHHH
Confidence            45899999999999999999999999999997530                          000   00      010 1


Q ss_pred             HHHH------------HHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChhh
Q 018320           85 IASY------------YEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        85 ~~~~------------~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l  145 (358)
                      +.+.            ....+++ .+|+++.+ .++.++.  +.  ..|.+.+|  +++++|.+|+|||.+|....
T Consensus        86 l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~~--~~V~~~~g~~~~~~~d~lViATGs~p~~p~  156 (468)
T PRK14694         86 LLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--RT--LTVTLNDGGEQTVHFDRAFIGTGARPAEPP  156 (468)
T ss_pred             HHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--CE--EEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence            1111            1112333 37888876 4666642  22  34666666  37999999999999987543

>PRK13984 putative oxidoreductase; Provisional

Probab=97.99  E-value=1.8e-05  Score=81.92  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=67.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      ++++++|||+|+.|+.+|..|++.|.+|+++++.+.+..       . .+..++.....+.+++.|++++.++.+..   
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK---  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence            578999999999999999999999999999998775421       1 13455555556778889999999977632   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                        +     +.+.+ ....+|.||+|+|..+
T Consensus       359 --~-----~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        359 --D-----IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             --c-----CCHHH-HHhcCCEEEEEcCcCC
Confidence              0     11111 2357999999999763

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.98  E-value=6.6e-05  Score=74.93  Aligned_cols=57  Identities=25%  Similarity=0.540  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      ..+.|.+...++||+++.++ |+.+..+++|.+..|++.+|+++++|.+|=|+|++..
T Consensus       156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            34455666778899999874 7777776788888999999999999999999998643

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK11445 putative oxidoreductase; Provisional

Probab=97.98  E-value=0.00011  Score=70.98  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=67.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--C------ccCCHHH-----------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--A------RLFTPKI-----------------------------   85 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--~------~~~~~~~-----------------------------   85 (358)
                      +|+|||||+.|+-+|..|++. .+|+++|+.+.+.  +      ..+.+..                             
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            699999999999999999999 9999999876321  0      0001000                             


Q ss_pred             ----------------HHHHHHH---HHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-CCCc--EEecCeEEEeeCCCCCh
Q 018320           86 ----------------ASYYEEY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        86 ----------------~~~~~~~---l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~  143 (358)
                                      +..+.+.   ..+.|++++.++.+++++.++++  ..+.+ .+|+  ++.+|.||.|.|..+..
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~v  159 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSMV  159 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence                            1111122   23468999999999999864444  23443 4564  68999999999987543

>PRK06126 hypothetical protein; Provisional

Probab=97.98  E-value=9.2e-05  Score=75.67  Aligned_cols=103  Identities=20%  Similarity=0.296  Sum_probs=70.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                                         
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            468999999999999999999999999999986422000                                         


Q ss_pred             -------------c----------------------CC-HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320           80 -------------L----------------------FT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL  122 (358)
Q Consensus        80 -------------~----------------------~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~  122 (358)
                                   .                      ++ ..+...+.+.+++ .|+++++++++++++.++++....+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~  166 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED  166 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence                         0                      00 0012233333433 489999999999998754442222221


Q ss_pred             -CCCc--EEecCeEEEeeCCCCCh
Q 018320          123 -RDGN--RLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       123 -~~g~--~i~~D~vi~a~G~~p~~  143 (358)
                       .+|+  ++.+|.||.|.|.++..
T Consensus       167 ~~~g~~~~i~ad~vVgADG~~S~V  190 (545)
T PRK06126        167 LDGGESLTIRADYLVGCDGARSAV  190 (545)
T ss_pred             CCCCcEEEEEEEEEEecCCcchHH
Confidence             3453  68999999999987643

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.97  E-value=2.2e-05  Score=80.62  Aligned_cols=91  Identities=21%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--------ccCCHHHHHHHHHHHHhCCCEEEcCCee-eEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------RLFTPKIASYYEEYYKSKGVKFVKGTVL-SSFD  110 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~gV~v~~~~~v-~~i~  110 (358)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++.+.+..        ..++.+....-.+.+++.|++++.++.+ ..+.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~  215 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT  215 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence            578999999999999999999999999999998765421        0134445555556677899999988765 3221


Q ss_pred             EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      .           . .....+|.|++|+|..+.
T Consensus       216 ~-----------~-~~~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        216 L-----------E-QLEGEFDAVFVAIGAQLG  235 (564)
T ss_pred             H-----------H-HHHhhCCEEEEeeCCCCC
Confidence            1           0 011248999999997653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=4.2e-05  Score=71.67  Aligned_cols=139  Identities=19%  Similarity=0.259  Sum_probs=97.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe-e-CCccc-----------CccCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVF-P-EAHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~-~-~~~~l-----------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      .+-.|+|||||+.|...|.+.++.|.+.-++. | +.+++           +..-.|+++..+++..++..|+++...+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            46689999999999999999999998876652 2 12222           12246889999999999999999988888


Q ss_pred             eEEEEc-CCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEeccccC---CCCcEEEEccccc
Q 018320          107 SSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS---SNSSVYAVGDVAA  178 (358)
Q Consensus       107 ~~i~~~-~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~t---~~~~VyAiGD~~~  178 (358)
                      +++++. ..+.+..+++.+|-.+++..+|++||.+=..--....-+..+.++..-.|+..   ..++|-+||--.+
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNS  365 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNS  365 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcc
Confidence            888762 33556789999999999999999999663221111111223445555444443   3467777775443

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.96  E-value=0.0001  Score=65.22  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=67.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------C-------------------------------CH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------~-------------------------------~~   83 (358)
                      ...|+|||+|+.|+.+|..|++.|.+|.++|+...+....      |                               ..
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            4689999999999999999999999999999975442110      0                               01


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CCcEEecCeEEEeeCCCCCh
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~  143 (358)
                      +....+.....+.|+++...+.++.+--.+++++..+...           |.-.+.+..||=+||.....
T Consensus        97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence            2223333334458999999999998754344677766553           33479999999999976554

>PLN02546 glutathione reductase

Probab=97.96  E-value=5.6e-05  Score=77.26  Aligned_cols=94  Identities=17%  Similarity=0.270  Sum_probs=64.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC---------Cccc------------------------------C-----
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE---------AHCM------------------------------A-----   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~---------~~~l------------------------------~-----   78 (358)
                      .++|||+|+.|+++|..++++|.+|+|+|+.         ..+.                              .     
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~~  160 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYET  160 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccCC
Confidence            6999999999999999999999999999951         1100                              0     


Q ss_pred             c-cCC------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           79 R-LFT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        79 ~-~~~------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      . .+|            .++...+.+.|++.||+++.+. .+.++.   .   .+.. +|+++.+|.||+|||.+|...
T Consensus       161 ~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd~---~---~V~v-~G~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        161 EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVDP---H---TVDV-DGKLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEccC---C---EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence            0 011            0112334456777899999763 334432   2   2333 577899999999999998654

>PRK13748 putative mercuric reductase; Provisional

Probab=97.96  E-value=0.00012  Score=75.11  Aligned_cols=97  Identities=21%  Similarity=0.301  Sum_probs=63.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------C---cc------CCH-H
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------A---RL------FTP-K   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------------------~---~~------~~~-~   84 (358)
                      ..++|||+|+.|+.+|..+++.|.+|.||++.. +.                           +   ..      ++. .
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  177 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSR  177 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHH
Confidence            589999999999999999999999999999862 10                           0   00      011 1


Q ss_pred             HHHH------------HHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320           85 IASY------------YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ~~~~------------~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      +.+.            ....+++. +|+++.+ .+..++   ... ..+.+.+|+  ++.+|.||+|||.+|...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~---~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p  247 (561)
T PRK13748        178 LLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD---DQT-LIVRLNDGGERVVAFDRCLIATGASPAVP  247 (561)
T ss_pred             HHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec---CCE-EEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence            1111            11223443 7888876 333332   222 345555663  699999999999998754

>PRK09897 hypothetical protein; Provisional

Probab=97.96  E-value=0.00012  Score=74.38  Aligned_cols=99  Identities=11%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccCcc----------------------CCHH-------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL----------------------FTPK-------------   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~~~----------------------~~~~-------------   84 (358)
                      ++|+|||||+.|+-+|..|.+.+.  +|+|+++...+....                      ..+.             
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            589999999999999999987654  899999864432110                      0000             


Q ss_pred             ------------------------HHHH---HHHHHHhCC--CEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEE
Q 018320           85 ------------------------IASY---YEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVV  134 (358)
Q Consensus        85 ------------------------~~~~---~~~~l~~~g--V~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi  134 (358)
                                              +.+.   +.+.+.+.|  +.++.+++|++++.++++  ..+.+.+ +..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence                                    1111   122333455  788888899999874433  3466545 4679999999


Q ss_pred             EeeCCCCC
Q 018320          135 VGIGIRPN  142 (358)
Q Consensus       135 ~a~G~~p~  142 (358)
                      +|+|..+.
T Consensus       160 LAtGh~~p  167 (534)
T PRK09897        160 IATGHVWP  167 (534)
T ss_pred             ECCCCCCC
Confidence            99997543

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.96  E-value=0.00012  Score=71.09  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +|+|||||.+|+.+|..|+++|.+|+|+++.
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.96  E-value=4.1e-05  Score=72.56  Aligned_cols=72  Identities=21%  Similarity=0.349  Sum_probs=46.7

Q ss_pred             cEEecCeEEEeeCCCCChhh----hhc--c-cccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHH
Q 018320          126 NRLPTDMVVVGIGIRPNTSL----FEG--Q-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK  198 (358)
Q Consensus       126 ~~i~~D~vi~a~G~~p~~~l----~~~--~-~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~  198 (358)
                      .+++|++++.++|+....-.    ++.  + +...+|.+.+..    -.|++|+.|.|...|.         ..+..+++
T Consensus       327 e~~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~----~~pglY~sGW~k~GP~---------GvIattm~  393 (468)
T KOG1800|consen  327 ETLPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG----CSPGLYASGWVKHGPT---------GVIATTMQ  393 (468)
T ss_pred             EeeccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec----cCCceEEEeeeccCCc---------ceeeehhh
Confidence            57999999999997643211    111  1 122344444211    4699999999998765         34556778


Q ss_pred             HHHHHHHHHcCC
Q 018320          199 SAKHAVAAIMEP  210 (358)
Q Consensus       199 ~g~~aa~~i~g~  210 (358)
                      ++..+++.|+..
T Consensus       394 dAf~v~d~I~qD  405 (468)
T KOG1800|consen  394 DAFEVADTIVQD  405 (468)
T ss_pred             hHHHHHHHHHHH
Confidence            888888887643

>PTZ00058 glutathione reductase; Provisional

Probab=97.95  E-value=9.7e-05  Score=75.55  Aligned_cols=31  Identities=39%  Similarity=0.536  Sum_probs=29.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++|||+|+.|+.+|..+++.|.+|.+||+.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            6999999999999999999999999999975

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.95  E-value=6.6e-05  Score=75.01  Aligned_cols=95  Identities=24%  Similarity=0.336  Sum_probs=61.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----CC-------------------------------HHH-
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FT-------------------------------PKI-   85 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~~-------------------------------~~~-   85 (358)
                      +++|||||+.|+.+|..|++.|.+|+++++ +.+....     .+                               +.+ 
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ   81 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence            699999999999999999999999999998 4331110     00                               000 


Q ss_pred             ----------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCCh
Q 018320           86 ----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        86 ----------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~  143 (358)
                                ...+...+++.||+++.+.. ..+   +... ..+...+| .++.+|.+|+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~---~~~~-~~v~~~~g~~~~~~d~lVlAtG~~p~~  145 (461)
T TIGR01350        82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEA-KFL---DPGT-VLVTGENGEETLTAKNIIIATGSRPRS  145 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc---cCCE-EEEecCCCcEEEEeCEEEEcCCCCCCC
Confidence                      01112234456778776543 222   2222 23444444 479999999999998864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.94  E-value=0.0001  Score=71.94  Aligned_cols=98  Identities=22%  Similarity=0.412  Sum_probs=67.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-Ccc--------------c------------------Cc----------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC--------------M------------------AR----------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~--------------l------------------~~----------   79 (358)
                      +|+|||||+.|+-+|..|++.|.+|+++|+. +..              +                  +.          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5999999999999999999999999999986 211              0                  00          


Q ss_pred             ---c---CCH-HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC------C--cEEecCeEEEeeCCCCCh
Q 018320           80 ---L---FTP-KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G--NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        80 ---~---~~~-~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~------g--~~i~~D~vi~a~G~~p~~  143 (358)
                         .   ++. .+-+.+.+...+.|++++.+ .++++..++++  ..+.+.+      +  .++.+|.||.|.|.++..
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v  157 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV  157 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence               0   000 12233445556679999865 68888764433  2344432      2  479999999999976543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.94  E-value=0.00012  Score=73.63  Aligned_cols=31  Identities=26%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      -.++|||||+.|+.+|..+++.|.+|.++++
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4799999999999999999999999999997

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.93  E-value=8.8e-05  Score=72.19  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=70.0

Q ss_pred             cEEEEcCcHHHHHHHHHH--HhCCCcEEEEeeCCcc--cCc----c----C-----------------------------
Q 018320           43 NAVVIGGGYIGMECAASL--VINKINVTMVFPEAHC--MAR----L----F-----------------------------   81 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L--~~~g~~Vtlv~~~~~~--l~~----~----~-----------------------------   81 (358)
                      .|+|||+|++|+.+|..|  ++.|.+|.+|++.+..  -..    .    .                             
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            489999999999999999  8889999999986543  100    0    0                             


Q ss_pred             -----CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           82 -----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        82 -----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                           ..++-+.+.+.+.+.|+ +..+++|++|+.+++  ...+.+.+|+++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence                 01233344455554454 566789999986444  34578889999999999999996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.92  E-value=0.00011  Score=71.86  Aligned_cols=100  Identities=17%  Similarity=0.204  Sum_probs=69.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--Cc----cCC---------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----LFT---------------------------------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--~~----~~~---------------------------------   82 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+...  ..    .+.                                 
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999999876310  00    000                                 


Q ss_pred             --------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEcC-CCc--EEecCeEEEeeC
Q 018320           83 --------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLR-DGN--RLPTDMVVVGIG  138 (358)
Q Consensus        83 --------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~~-~g~--~i~~D~vi~a~G  138 (358)
                                          +.+...+.+.+.+.|+.++++.+++.+.. ++++  ..|.+. +|+  ++.+|+||-|-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~--~~V~~~~~g~~~~i~adlvIGADG  160 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR--PYVTFERDGERHRLDCDFIAGCDG  160 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc--cEEEEEECCeEEEEEeCEEEECCC
Confidence                                11123334445566888888888777753 2222  345554 675  689999999999


Q ss_pred             CCCCh
Q 018320          139 IRPNT  143 (358)
Q Consensus       139 ~~p~~  143 (358)
                      .++..
T Consensus       161 ~~S~V  165 (390)
T TIGR02360       161 FHGVS  165 (390)
T ss_pred             Cchhh
Confidence            77644

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.92  E-value=0.00015  Score=72.49  Aligned_cols=96  Identities=23%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc--------cC------------------c----------cCCH-HH
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MA------------------R----------LFTP-KI   85 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~--------l~------------------~----------~~~~-~~   85 (358)
                      +++|||+|+.|+.+|..+++.|.+|+++++.+.-        .|                  .          ..|. .+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            6999999999999999999999999999986321        00                  0          0111 11


Q ss_pred             H-----------HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCCh
Q 018320           86 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        86 ~-----------~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~  143 (358)
                      .           +.+...+++.+|+++.+. +..+   ++.. ..+...++ +++.+|.+|+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~---~~~~-v~v~~~~~~~~~~~d~lviATGs~p~~  146 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE---TDHR-VRVEYGDKEEVVDAEQFIIAAGSEPTE  146 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc---cCCE-EEEeeCCCcEEEECCEEEEeCCCCCCC
Confidence            1           112234556688887663 2222   2232 24444455 469999999999999864

>PLN02507 glutathione reductase

Probab=97.90  E-value=0.00013  Score=73.84  Aligned_cols=98  Identities=21%  Similarity=0.265  Sum_probs=65.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC---------CcccCcc--------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE---------AHCMARL--------------------------------   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~---------~~~l~~~--------------------------------   80 (358)
                      -.++|||+|+.|+.+|..++++|.+|.|+|+.         ..+....                                
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~  105 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN  105 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            36999999999999999999999999999951         1111000                                


Q ss_pred             ----CC-HH-----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCC
Q 018320           81 ----FT-PK-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPN  142 (358)
Q Consensus        81 ----~~-~~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~  142 (358)
                          ++ .+           +...+++.+.+.||+++.+ .++.++   ... ..+.+.+|+  ++.+|.||+|||.+|.
T Consensus       106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd---~~~-v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVG---PNE-VEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec---CCE-EEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence                00 00           0111223455678988876 344443   222 356666775  5889999999999886


Q ss_pred             hh
Q 018320          143 TS  144 (358)
Q Consensus       143 ~~  144 (358)
                      ..
T Consensus       181 ~p  182 (499)
T PLN02507        181 RP  182 (499)
T ss_pred             CC
Confidence            54

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.88  E-value=0.00018  Score=69.57  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -+|+|||||.+|+-+|..|+++|.+|+|++++.
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            469999999999999999999999999999853

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.88  E-value=2.9e-05  Score=82.59  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+|+|||+|+.|+++|..|++.|++||++++.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            57899999999999999999999999999999753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.87  E-value=1.2e-05  Score=70.89  Aligned_cols=66  Identities=21%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             CCCCCCccCCCCC-CCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320            2 NMALKLEEFGLSG-SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus         2 ~~~~~P~~~~ipG-~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |.--.|+.+.+|| .+. .+++...+.+..       ..++|+|+|||+|.+|+++|..|++.|.+||++.|++.
T Consensus       135 G~~~~p~~p~~~g~~~~-~~~h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  135 GHYSHPRIPDIPGSAFR-PIIHSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             -SSCSB---S-TTGGCS-EEEEGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             eccCCCCcccccccccc-ceEehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            3334677777888 444 455544433332       23689999999999999999999999999999999874

...

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.86  E-value=0.00021  Score=70.22  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+|||||.+|+.+|..|++.|.+|+|+|+.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999865

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.81  E-value=0.00014  Score=72.98  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++|||||+.|+.+|..++++|.+|+|+++.
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            47999999999999999999999999999975

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.81  E-value=4.9e-05  Score=80.20  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=69.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|.|||+|+.|+.+|..|.+.|+.||+.+|++++..-        -+|..+.+.-.+.|.+.||+|++++.|-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            4789999999999999999999999999999999887321        146666676677889999999998765221  


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                              +. -|+-.-+.|.|++|+|..
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCC
Confidence                    11 133334579999999965

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.79  E-value=3.4e-05  Score=76.59  Aligned_cols=90  Identities=22%  Similarity=0.237  Sum_probs=68.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||+|+.|+.+|..|++.|++||++++.+.+...        .++.++.+...+.|++.|++|+.++.+-.   
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence            4689999999999999999999999999999998765321        14557888888999999999999876531   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                        +     +++.+ ..-++|.|++++|..
T Consensus       199 --~-----it~~~-L~~e~Dav~l~~G~~  219 (457)
T COG0493         199 --D-----ITLEE-LLKEYDAVFLATGAG  219 (457)
T ss_pred             --c-----CCHHH-HHHhhCEEEEecccc
Confidence              1     11111 123459999999943

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.78  E-value=0.00033  Score=68.77  Aligned_cols=100  Identities=17%  Similarity=0.299  Sum_probs=65.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc---c---------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L---------------------------------------   80 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---~---------------------------------------   80 (358)
                      +|+|||||+.|+.+|..|++.|.+|.++|+.+.+...   .                                       
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            6999999999999999999999999999986432000   0                                       


Q ss_pred             --------CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEc-CCCcEEEEEc--CC-----C--cEEecCeEEEeeCCCC
Q 018320           81 --------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNL--RD-----G--NRLPTDMVVVGIGIRP  141 (358)
Q Consensus        81 --------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~i~~D~vi~a~G~~p  141 (358)
                              ++ ..+-+.+.+...+.|++++.++ +.+++.. ..+....+++  .+     |  .++.++.||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 0111224445566799998774 6666421 1122223332  21     3  4789999999999876


Q ss_pred             Ch
Q 018320          142 NT  143 (358)
Q Consensus       142 ~~  143 (358)
                      ..
T Consensus       161 ~v  162 (398)
T TIGR02028       161 RV  162 (398)
T ss_pred             HH
Confidence            44

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.78  E-value=0.00019  Score=75.07  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+|||||.+|+.+|..|+++|.+|+|+++..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            489999999999999999999999999999863

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.77  E-value=5.6e-05  Score=73.70  Aligned_cols=71  Identities=21%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------cCCH---H---HHHHHHHHHHhCCCEEEcCCeeeE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTP---K---IASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------~~~~---~---~~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      .++++|||||..|++.|..|++.|.+|+|+|+.+.+..+      .|+.   .   ++-.+.+.-...+|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            579999999999999999999999999999999877433      1111   1   112222333446899999999999


Q ss_pred             EEE
Q 018320          109 FDV  111 (358)
Q Consensus       109 i~~  111 (358)
                      ++.
T Consensus       204 v~G  206 (622)
T COG1148         204 VSG  206 (622)
T ss_pred             ecc
Confidence            865

>PRK07121 hypothetical protein; Validated

Probab=97.75  E-value=0.00038  Score=70.26  Aligned_cols=59  Identities=25%  Similarity=0.332  Sum_probs=41.3

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-Cc--EEec-CeEEEeeCC-CCChhhhh
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE  147 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~-~p~~~l~~  147 (358)
                      +.+.+++.|+++++++.++++..++++++..+...+ ++  .+.+ +.||+|+|- ..|.++++
T Consensus       183 L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        183 LAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence            344455678999999999998765556777665532 32  4778 999999995 44555554

>PRK14727 putative mercuric reductase; Provisional

Probab=97.74  E-value=0.00033  Score=70.52  Aligned_cols=100  Identities=18%  Similarity=0.292  Sum_probs=65.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------C--c------cCCHH-
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------A--R------LFTPK-   84 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------------------~--~------~~~~~-   84 (358)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                           +  .      .++.. 
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   95 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL   95 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence            4689999999999999999999999999999863210                           0  0      01111 


Q ss_pred             H-------HHH-----HHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChhh
Q 018320           85 I-------ASY-----YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        85 ~-------~~~-----~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~l  145 (358)
                      +       ...     +.+.++.. ||+++.+.  ..+.  +++. ..+.+.+|+  ++.+|.+|+|||.+|....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~--a~f~--~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~~p~  166 (479)
T PRK14727         96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGY--ARFK--DGNT-LVVRLHDGGERVLAADRCLIATGSTPTIPP  166 (479)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE--EEEe--cCCE-EEEEeCCCceEEEEeCEEEEecCCCCCCCC
Confidence            0       011     12233333 78888664  2332  2332 346666664  6999999999999987543

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.74  E-value=0.00036  Score=68.66  Aligned_cols=57  Identities=19%  Similarity=0.284  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCc--EEecCeEEEeeCCCCC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN  142 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~  142 (358)
                      +...+.+.+++.|+++++++.++++.. +++++..+...   +|+  ++.++.||+|+|-...
T Consensus       143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  143 LIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            455667778888999999999999987 56788777765   454  5789999999997655

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.72  E-value=0.00019  Score=71.72  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=29.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      -+++|||||+.|+.+|..|++.|.+|.+|++
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~   34 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEK   34 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3799999999999999999999999999998

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.71  E-value=0.00047  Score=67.76  Aligned_cols=32  Identities=31%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|+|||||.+|+.+|..|++.|.+|+|+++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            69999999999999999999999999999863

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.70  E-value=0.00042  Score=70.86  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -+|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            47999999999999999999999999999985

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.70  E-value=0.00032  Score=72.69  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +..+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45789999999999999999999999999999865

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.70  E-value=0.00052  Score=68.70  Aligned_cols=106  Identities=16%  Similarity=0.229  Sum_probs=75.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-c-C------------c-------------------------cCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-M-A------------R-------------------------LFT   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-l-~------------~-------------------------~~~   82 (358)
                      -.|||||+|..|+-+|..+++.|.+|+|+|+.+.. . .            .                         ..+
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD   84 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence            47999999999999999999999999999986521 0 0            0                         001


Q ss_pred             H----------------------------------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCc
Q 018320           83 P----------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  116 (358)
Q Consensus        83 ~----------------------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~  116 (358)
                      +                                              .+...+.+.+++.|++++++++++++.. ++++
T Consensus        85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~  163 (466)
T PRK08274         85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGR  163 (466)
T ss_pred             HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCe
Confidence            1                                              1223334455677999999999999986 4677


Q ss_pred             EEEEEcC--CC--cEEecCeEEEeeCC-CCChhhhhc
Q 018320          117 VVAVNLR--DG--NRLPTDMVVVGIGI-RPNTSLFEG  148 (358)
Q Consensus       117 v~~v~~~--~g--~~i~~D~vi~a~G~-~p~~~l~~~  148 (358)
                      +..+...  ++  ..+.++.||+|+|. ..+.+++..
T Consensus       164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~~  200 (466)
T PRK08274        164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLRE  200 (466)
T ss_pred             EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHHh
Confidence            6666552  33  35889999999984 455555553

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.68  E-value=0.00076  Score=66.19  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      .+.+++.|++++.+++|++++..+++.+..+++.+| ++.++.||+++|..
T Consensus       190 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       190 ARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            345567899999999999997534455556777776 69999998887754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.65  E-value=0.00067  Score=67.68  Aligned_cols=101  Identities=22%  Similarity=0.318  Sum_probs=66.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC------------c-cCCH------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------R-LFTP------------------------   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~------------~-~~~~------------------------   83 (358)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+....            . .+.+                        
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~  118 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK  118 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence            35899999999999999999999999999998642100            0 0000                        


Q ss_pred             --------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcC--CCcEEEEEcC---------CCcEEecCeEEEeeC
Q 018320           84 --------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDS--NGKVVAVNLR---------DGNRLPTDMVVVGIG  138 (358)
Q Consensus        84 --------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~g~v~~v~~~---------~g~~i~~D~vi~a~G  138 (358)
                                    .+-+.+.+...+.|++++.+ .+++++...  ++. ..+.+.         ++.++.+|.||-|.|
T Consensus       119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~v~a~~VIgADG  196 (450)
T PLN00093        119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGTPKTLEVDAVIGADG  196 (450)
T ss_pred             cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence                          01223444456679999865 466775321  222 233332         235799999999999


Q ss_pred             CCCCh
Q 018320          139 IRPNT  143 (358)
Q Consensus       139 ~~p~~  143 (358)
                      ..+..
T Consensus       197 ~~S~v  201 (450)
T PLN00093        197 ANSRV  201 (450)
T ss_pred             cchHH
Confidence            76543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.63  E-value=0.00065  Score=68.47  Aligned_cols=97  Identities=16%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC--------cccCc-----------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCMAR-----------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~--------~~l~~-----------------------------------   79 (358)
                      .++|||+|+.|+.+|..+++.|.+|++|++..        .+...                                   
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~   83 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET   83 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            69999999999999999999999999999621        11000                                   


Q ss_pred             -cCCH------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChh
Q 018320           80 -LFTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        80 -~~~~------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  144 (358)
                       .+|-            .+.+.....+++.||+++.+..  ++.  +... ..+...+|  +++.+|.+|+|||.+|...
T Consensus        84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a--~f~--~~~~-v~v~~~~g~~~~~~~d~lVIATGs~p~~p  158 (484)
T TIGR01438        84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA--EFV--DKHR-IKATNKKGKEKIYSAERFLIATGERPRYP  158 (484)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE--EEc--CCCE-EEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence             0010            0122233456778899887643  332  2222 23433344  3699999999999998654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.62  E-value=0.00025  Score=72.52  Aligned_cols=103  Identities=17%  Similarity=0.320  Sum_probs=78.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcc------cCccCC-----HHHHHHHHHHHHhCCCEEEcCCee
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC------MARLFT-----PKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~------l~~~~~-----~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      ..+++|||.|..|.-+.+.+.+.   -.+||++...+++      +.+.+.     +++.-.-.++.+++||+++++.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            36899999999999999998884   4579998766554      222222     233334457889999999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                      +.|..  +.  ..|...+|.++.+|.+|+|||+.|......
T Consensus        83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~PiP  119 (793)
T COG1251          83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPIP  119 (793)
T ss_pred             EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCCC
Confidence            99975  22  357778899999999999999999876543

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.61  E-value=0.00032  Score=67.61  Aligned_cols=103  Identities=23%  Similarity=0.282  Sum_probs=71.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccC----------CHHHHHHHHHHHHhC--CCEEEcCCeee
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKSK--GVKFVKGTVLS  107 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~--gV~v~~~~~v~  107 (358)
                      +.|+|||+|+|..|+.+...|-..-++|++|.++++++-..+          -..+.+.+....++.  +++++ ...-.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence            568999999999999999999988999999999887642212          234566666666554  55655 34555


Q ss_pred             EEEEcCCCcEEE-EEcCCC----cEEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVA-VNLRDG----NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~-v~~~~g----~~i~~D~vi~a~G~~p~~~  144 (358)
                      .+++ ++.++.. ..+.++    ..+.+|.+|+|+|..|++-
T Consensus       133 ~iDp-~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  133 KIDP-DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             eecc-cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            6664 2232221 222344    4688999999999998874

>PLN02985 squalene monooxygenase

Probab=97.61  E-value=0.00058  Score=69.27  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            4589999999999999999999999999999863

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.60  E-value=0.00072  Score=65.26  Aligned_cols=31  Identities=19%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +|+|||||.+|+.+|..|++.|.+|+|+++.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~   32 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS   32 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999984

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.60  E-value=0.00088  Score=67.20  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=30.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~   33 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG   33 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            47999999999999999999999999999985

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.59  E-value=0.00063  Score=57.76  Aligned_cols=93  Identities=22%  Similarity=0.397  Sum_probs=61.0

Q ss_pred             EEEcCcHHHHHHHHHHHhC-----CCcEEEEeeCCcc---------------------cCccCC---HH-----------
Q 018320           45 VVIGGGYIGMECAASLVIN-----KINVTMVFPEAHC---------------------MARLFT---PK-----------   84 (358)
Q Consensus        45 vVIGgG~~gle~A~~L~~~-----g~~Vtlv~~~~~~---------------------l~~~~~---~~-----------   84 (358)
                      +|||+|+.|+-++..|.+.     ..+|+|+++.+.-                     +....+   ++           
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            5999999999999999987     4589999984321                     000000   01           


Q ss_pred             ---------------HHHHHHHHHH------hCCCEEE-cCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           85 ---------------IASYYEEYYK------SKGVKFV-KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        85 ---------------~~~~~~~~l~------~~gV~v~-~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                                     ..+++.+.++      ..||++. ...+|+.++..+++  ..+.+.+|..+.+|.||+|+|.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence                           1222222221      2354443 24588888875555  4677899999999999999995

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.59  E-value=0.00031  Score=63.93  Aligned_cols=93  Identities=20%  Similarity=0.284  Sum_probs=65.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc----------------C---CH--------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------F---TP--------------------   83 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------~---~~--------------------   83 (358)
                      +++|||+|..|+.+|..|+..|.+||+++++.-+..+.                |   ++                    
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            69999999999999999999999999999964321110                0   11                    


Q ss_pred             -----------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCC
Q 018320           84 -----------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGI  139 (358)
Q Consensus        84 -----------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~  139 (358)
                                             .|+. +.+.| ....++.++++|+++...++.  -.+..++| +...+|.|++++..
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsa-lak~L-AtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSA-LAKFL-ATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHH-HHHHH-hccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence                                   1221 22222 235678888999999764333  46777565 56889999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.58  E-value=0.00024  Score=71.87  Aligned_cols=31  Identities=32%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      -.++|||||+.|+.+|..++++|.+|+||++
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4799999999999999999999999999995

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.55  E-value=0.001  Score=62.42  Aligned_cols=53  Identities=21%  Similarity=0.369  Sum_probs=43.3

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                      ..++..+++.|+.|+.+..++.++- ++++..+.|.+++|..+.++.+|+++|.
T Consensus       157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga  210 (399)
T KOG2820|consen  157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA  210 (399)
T ss_pred             HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence            3346677888999999999988763 3456667899999999999999999994

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.51  E-value=0.00097  Score=66.75  Aligned_cols=32  Identities=19%  Similarity=0.493  Sum_probs=29.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~   73 (358)
                      .+|+|||||++|+.+|..|++.  |.+|+|+|+.
T Consensus        25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~   58 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD   58 (460)
T ss_pred             eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            4799999999999999999998  8999999974

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.51  E-value=0.0013  Score=68.25  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .-+|+|||||.+|+.+|..|+++|.+|+|||+.
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            357999999999999999999999999999984

>PRK08275 putative oxidoreductase; Provisional

Probab=97.48  E-value=0.0016  Score=66.73  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCc---------------------------------cCCH---
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR---------------------------------LFTP---   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~---------------------------------~~~~---   83 (358)
                      -.|+|||+|..|+-+|..+++.  |.+|+|+++.+.....                                 ..++   
T Consensus        10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~v   89 (554)
T PRK08275         10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKAV   89 (554)
T ss_pred             cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHHH
Confidence            4799999999999999999987  6899999986431000                                 0011   


Q ss_pred             ------------------------------------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC
Q 018320           84 ------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  115 (358)
Q Consensus        84 ------------------------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g  115 (358)
                                                                      .+.+.+.+.+++.||+++.++.++++..++++
T Consensus        90 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g  169 (554)
T PRK08275         90 YAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADG  169 (554)
T ss_pred             HHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC
Confidence                                                            12234444556678999999999999764366


Q ss_pred             cEEEEE---cCCCc--EEecCeEEEeeCCCC
Q 018320          116 KVVAVN---LRDGN--RLPTDMVVVGIGIRP  141 (358)
Q Consensus       116 ~v~~v~---~~~g~--~i~~D~vi~a~G~~p  141 (358)
                      ++..+.   ..+|+  .+.++.||+|+|...
T Consensus       170 ~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        170 RVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             eEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            666554   33554  478999999999653

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.47  E-value=0.0014  Score=67.03  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~   49 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA   49 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence            479999999999999999999999999999854

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.47  E-value=0.0015  Score=67.99  Aligned_cols=103  Identities=21%  Similarity=0.343  Sum_probs=70.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccCc----------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR----------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~~----------------------------------------   79 (358)
                      .-+|+|||||+.|+-+|..|+++ |.+|+|+++.+.....                                        
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            35899999999999999999995 9999999986432100                                        


Q ss_pred             -----------c--------------CC-HHHHHHHHHHHHhCC--CEEEcCCeeeEEEEcCCC-cEEEEEcC------C
Q 018320           80 -----------L--------------FT-PKIASYYEEYYKSKG--VKFVKGTVLSSFDVDSNG-KVVAVNLR------D  124 (358)
Q Consensus        80 -----------~--------------~~-~~~~~~~~~~l~~~g--V~v~~~~~v~~i~~~~~g-~v~~v~~~------~  124 (358)
                                 .              +. ..+.+.+.+.+.+.+  +++..++++++++.++++ ..+.+++.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                       0              00 012333445555555  578889999999864332 11234443      3


Q ss_pred             C--cEEecCeEEEeeCCCCCh
Q 018320          125 G--NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       125 g--~~i~~D~vi~a~G~~p~~  143 (358)
                      |  +++.+|+||-|-|.++..
T Consensus       192 g~~~tv~A~~lVGaDGa~S~V  212 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARSRV  212 (634)
T ss_pred             CceEEEEeCEEEECCCCchHH
Confidence            5  579999999999987654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.46  E-value=0.0012  Score=66.44  Aligned_cols=31  Identities=29%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC-CCcEEEEee
Q 018320           42 GNAVVIGGGYIGMECAASLVIN-KINVTMVFP   72 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~   72 (358)
                      -.++|||+|+.|..+|..++++ |.+|.||++
T Consensus         4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~   35 (486)
T TIGR01423         4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV   35 (486)
T ss_pred             cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence            4799999999999999999997 999999996

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.46  E-value=0.0012  Score=65.58  Aligned_cols=98  Identities=23%  Similarity=0.315  Sum_probs=65.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------------CCH-H
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FTP-K   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------------~~~-~   84 (358)
                      -.++|||+|+.|.-+|..+++.|.+|.++|+.+.+....                                    +|- +
T Consensus         5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~   84 (454)
T COG1249           5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEK   84 (454)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHH
Confidence            479999999999999999999999999999985331100                                    111 0


Q ss_pred             H-----------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           85 I-----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ~-----------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +           ...++..+++.||+++.+..  ++.  +++.+ .|...+.+++.+|.+|+|||.+|...
T Consensus        85 ~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a--~f~--~~~~v-~V~~~~~~~~~a~~iiIATGS~p~~~  150 (454)
T COG1249          85 LLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA--RFV--DPHTV-EVTGEDKETITADNIIIATGSRPRIP  150 (454)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE--EEC--CCCEE-EEcCCCceEEEeCEEEEcCCCCCcCC
Confidence            1           11223445566899887642  443  23322 23322347899999999999999764

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0011  Score=58.83  Aligned_cols=99  Identities=15%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--------------------CcccCccCCHHHHHHHHHHHHhCCCEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--------------------AHCMARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--------------------~~~l~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      ..+|+|||+|+.+...|..+++...+-.++|-.                    |-+-.....+++.+.++++-++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            358999999999999999999987777776542                    222223356889999999999999999


Q ss_pred             EcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       101 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      +++ .|.+++.  ..+...+. +|.+.+.+|.||+|+|.....
T Consensus        88 ~tE-tVskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   88 ITE-TVSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKR  126 (322)
T ss_pred             eee-ehhhccc--cCCCeEEE-ecCCceeeeeEEEecccceee
Confidence            976 4666653  23333343 466789999999999976543

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.44  E-value=0.0016  Score=66.95  Aligned_cols=32  Identities=19%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~   32 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY   32 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            48999999999999999999999999999754

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.41  E-value=0.0019  Score=64.11  Aligned_cols=60  Identities=15%  Similarity=0.220  Sum_probs=42.6

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcC-CCcEEEEEcC-CCcEEecCeEEEeeC-CCCChhhhhc
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLR-DGNRLPTDMVVVGIG-IRPNTSLFEG  148 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~-~g~v~~v~~~-~g~~i~~D~vi~a~G-~~p~~~l~~~  148 (358)
                      +.+.+++.|+++++++.++++..++ ++++..+... ++.++.++.||+|+| +..|.+++..
T Consensus       129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            3344566789999999999987643 5666665543 335799999999999 5555565543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.41  E-value=0.00024  Score=51.51  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             EEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           46 VIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        46 VIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      |||+|..|+.+|..|++.|.+|+|+|+.+++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            899999999999999999999999999987654

...

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.40  E-value=0.0022  Score=63.75  Aligned_cols=52  Identities=12%  Similarity=0.211  Sum_probs=36.5

Q ss_pred             HHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEE-cCCCc--EEecCeEEEeeCCC
Q 018320           88 YYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIR  140 (358)
Q Consensus        88 ~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~  140 (358)
                      .+.+.+++ .||++++++.++++.. +++++..+. ..++.  .+.++.||+|+|.-
T Consensus       133 ~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        133 ILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            34444544 4899999999999875 356655543 33444  58899999999963

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.001  Score=62.20  Aligned_cols=122  Identities=20%  Similarity=0.236  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE--EecCeEEEeeCCCCChhhh------hcc------
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLF------EGQ------  149 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~l~------~~~------  149 (358)
                      .+.+.+.+.+++.|.-+.++.+|.+.+- .++++..+.+.+...  +.+|..++|+|.--...+.      .+.      
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi  337 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDI  337 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhccc
Confidence            3456677788889999999999999876 678888888887755  5689999999953221111      000      


Q ss_pred             c------cc-----------ccCcEEEeccccCC-----CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320          150 L------TL-----------EKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       150 ~------~~-----------~~g~i~vd~~~~t~-----~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  207 (358)
                      .      .+           ..=++.+|++++-+     ..|+||||-+.+.++++...    --...|+..|..||+.|
T Consensus       338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGsGVaivta~~aa~qi  413 (421)
T COG3075         338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGSGVAIVTALHAAEQI  413 (421)
T ss_pred             ccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCcchHHHHHHHHHHHH
Confidence            0      01           01247788888763     57899999999988764310    11235666777777777


Q ss_pred             cCC
Q 018320          208 MEP  210 (358)
Q Consensus       208 ~g~  210 (358)
                      +..
T Consensus       414 ~~~  416 (421)
T COG3075         414 AER  416 (421)
T ss_pred             HHH
Confidence            653

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.37  E-value=0.0024  Score=64.83  Aligned_cols=53  Identities=28%  Similarity=0.468  Sum_probs=39.7

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEc-CC--CcEEEEEcC-CCc-----EEecCeEEEeeCCCC
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVD-SN--GKVVAVNLR-DGN-----RLPTDMVVVGIGIRP  141 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~-~~--g~v~~v~~~-~g~-----~i~~D~vi~a~G~~p  141 (358)
                      +.+.|+++||+|+++++|+++..+ ++  +++..+... +|+     ..+.|.||+++|.-.
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t  293 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT  293 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence            466888899999999999999864 23  567777664 332     356899999999543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.35  E-value=0.0024  Score=66.15  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           44 AVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      |+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            6899999999999999999999999999865

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.00056  Score=67.97  Aligned_cols=96  Identities=20%  Similarity=0.286  Sum_probs=66.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc------------------------------------------cCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------------------------------------------MAR   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~------------------------------------------l~~   79 (358)
                      -.|+|||||-.|+|+|.+.++.|+++.++.....-                                          +..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            47999999999999999999999999988763211                                          000


Q ss_pred             -----------cCCHH-HHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCC-cEEEEEcCCCcEEecCeEEEeeCC
Q 018320           80 -----------LFTPK-IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        80 -----------~~~~~-~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                                 +.|.. ....+++.++. .++.++.+ .|+++.- +++ ++..|.+.+|..+.|+.||++||.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence                       00110 12233344433 46777654 4555544 344 588999999999999999999995

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.35  E-value=0.0019  Score=65.57  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .-.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            357999999999999999999999999999985

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.0018  Score=63.59  Aligned_cols=101  Identities=20%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC---CcEEEEeeCCcccCc--------------------cC----CHH----------
Q 018320           42 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCMAR--------------------LF----TPK----------   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g---~~Vtlv~~~~~~l~~--------------------~~----~~~----------   84 (358)
                      ++|+|||||++|+.+|..|.+.-   ..|+|+++.+++...                    .+    +.+          
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            47999999999999999998751   239999986554110                    00    001          


Q ss_pred             ------------------------HHHHHHHHHHhCC---CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320           85 ------------------------IASYYEEYYKSKG---VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        85 ------------------------~~~~~~~~l~~~g---V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                                              +.+.+...+++.-   |.++ .++.+++..++++....+...+|....+|.+|++|
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                                    1222222233222   3333 34455555544566667788899999999999999


Q ss_pred             CCCCCh
Q 018320          138 GIRPNT  143 (358)
Q Consensus       138 G~~p~~  143 (358)
                      |..+..
T Consensus       161 gh~~~~  166 (474)
T COG4529         161 GHSAPP  166 (474)
T ss_pred             cCCCCC
Confidence            976554

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.34  E-value=0.0028  Score=66.06  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~   67 (640)
T PRK07573         36 FDVIVVGTGLAGASAAATLGELGYNVKVFCYQ   67 (640)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEecC
Confidence            47999999999999999999999999999863

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00024  Score=70.66  Aligned_cols=68  Identities=18%  Similarity=0.145  Sum_probs=49.5

Q ss_pred             CCCCCCccCCCCCCCCCC--eEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320            2 NMALKLEEFGLSGSDAEN--VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus         2 ~~~~~P~~~~ipG~~~~~--v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      |.--.|..+.|+|.+.-.  +++-....+.+.       .++|+|+|||+|.+|+++|..|.+.|.+||++.|++..
T Consensus       141 G~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~-------~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         141 GHLSEPYIPDFAGLDEFKGRILHSADWPNPED-------LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             cCCCCCCCCCCCCccCCCceEEchhcCCCccc-------cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            344556666688876432  332222333322       27999999999999999999999999999999998754

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.33  E-value=0.0025  Score=65.15  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+ +.|.+|+|+++.+
T Consensus         8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~   39 (543)
T PRK06263          8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL   39 (543)
T ss_pred             cCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence            4799999999999999999 8899999999864

>PRK07846 mycothione reductase; Reviewed

Probab=97.32  E-value=0.0013  Score=65.66  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------Cc--------------------------cCCH-HHH
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------AR--------------------------LFTP-KIA   86 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------~~--------------------------~~~~-~~~   86 (358)
                      .++|||+|+.|..+|..  ..|.+|.+||+.. +.         |.                          .+|- ++.
T Consensus         3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (451)
T PRK07846          3 DLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV   79 (451)
T ss_pred             CEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence            68999999999987754  4699999999742 10         00                          0010 011


Q ss_pred             HH-------H-----HHH-HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320           87 SY-------Y-----EEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus        87 ~~-------~-----~~~-l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  145 (358)
                      +.       +     ... +++.||+++.+... -+   ++.   .|++.+|+++.+|.+|+|||.+|....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~-~~---~~~---~V~v~~g~~~~~d~lViATGs~p~~p~  144 (451)
T PRK07846         80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHAR-FI---GPK---TLRTGDGEEITADQVVIAAGSRPVIPP  144 (451)
T ss_pred             HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEE-Ee---cCC---EEEECCCCEEEeCEEEEcCCCCCCCCC
Confidence            11       1     112 45567888776432 12   222   455667888999999999999987543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.32  E-value=0.0032  Score=65.27  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.  |.+|.|+++.+
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~   46 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN   46 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            3799999999999999999998  99999999864

>TIGR00551 nadB L-aspartate oxidase

Probab=97.32  E-value=0.0025  Score=64.25  Aligned_cols=97  Identities=19%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------------------------------ccCC---------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------RLFT---------   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~~~---------   82 (358)
                      .|+|||+|..|+-+|..+++.|. |+|+++.+....                               ...+         
T Consensus         4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   82 (488)
T TIGR00551         4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVVS   82 (488)
T ss_pred             cEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            69999999999999999999997 999998632100                               0001         


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCc
Q 018320           83 ---------------------------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK  116 (358)
Q Consensus        83 ---------------------------------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~  116 (358)
                                                                   ..+...+.+.+++ .||+++.++.++++.. +++.
T Consensus        83 ~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~  161 (488)
T TIGR00551        83 DARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLI-ETGR  161 (488)
T ss_pred             hHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCE
Confidence                                                         1223334444555 5899999999999875 3566


Q ss_pred             EEEEEcCC-C--cEEecCeEEEeeCCCC
Q 018320          117 VVAVNLRD-G--NRLPTDMVVVGIGIRP  141 (358)
Q Consensus       117 v~~v~~~~-g--~~i~~D~vi~a~G~~p  141 (358)
                      +..+...+ +  ..+.++.||+|+|...
T Consensus       162 v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       162 VVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             EEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            65554433 3  3689999999999654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.31  E-value=0.0023  Score=62.42  Aligned_cols=84  Identities=19%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             HHhCCCcEEEEe-eCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320           60 LVINKINVTMVF-PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        60 L~~~g~~Vtlv~-~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  138 (358)
                      +...|+..-++. +.+|+.. ..-+++.+.+.+.+++.|++++++++|..++. +++.+..+.+++|.++++|.||+|+|
T Consensus       150 ~~aa~a~~eil~~~~rHiGT-D~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~G  227 (486)
T COG2509         150 FRAAGAGEEILPIYQRHIGT-DILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPG  227 (486)
T ss_pred             HHHhCCCceeeeccccccCc-cchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccC
Confidence            344466555553 3445444 36788899999999999999999999999987 56667789999999999999999999


Q ss_pred             CCCChhh
Q 018320          139 IRPNTSL  145 (358)
Q Consensus       139 ~~p~~~l  145 (358)
                      +.....+
T Consensus       228 rsg~dw~  234 (486)
T COG2509         228 RSGRDWF  234 (486)
T ss_pred             cchHHHH
Confidence            8876654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.31  E-value=0.0032  Score=62.85  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             CCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CC--cEEecCeEEEeeCCCCChh---hhhcccccccCcEEE
Q 018320           96 KGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DG--NRLPTDMVVVGIGIRPNTS---LFEGQLTLEKGGIKV  159 (358)
Q Consensus        96 ~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~---l~~~~~~~~~g~i~v  159 (358)
                      +.+.+++..+..+|.. .++++..+++.           .|  ++++||+|+-|+|++...-   .++..+...+|.+. 
T Consensus       324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd~~~~n~~grv~-  401 (506)
T PTZ00188        324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFAENLYNQSVQMFKEDIG-  401 (506)
T ss_pred             eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCCCCCccccCCCCCCccc-
Confidence            3467778888888875 34667666655           23  3689999999999885431   11111111222222 


Q ss_pred             eccccCCCCcEEEEcccccccccccC
Q 018320          160 TGRLQSSNSSVYAVGDVAAFPLKLLG  185 (358)
Q Consensus       160 d~~~~t~~~~VyAiGD~~~~~~~~~g  185 (358)
                           +..|++|++|.+-..|..+.|
T Consensus       402 -----~~~~g~Y~~GWiKrGP~GvIg  422 (506)
T PTZ00188        402 -----QHKFAIFKAGWFDKGPKGNIA  422 (506)
T ss_pred             -----CCCCCcEEeeecCcCCCceec
Confidence                 136999999999988765443

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.30  E-value=0.003  Score=65.39  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=29.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~   44 (598)
T PRK09078         13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKV   44 (598)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence            36999999999999999999999999999875

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.30  E-value=0.00044  Score=70.89  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=81.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHH-------HHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEc
Q 018320           40 SGGNAVVIGGGYIGMECAAS-------LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  112 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~-------L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~  112 (358)
                      .++.++++|+|++++|++..       +.+.|.+|++++..+..... ++..+...+.+.+++.||++++++.++++.. 
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-  236 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV-  236 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence            36778999999999999875       67778888887665544433 6777888888999999999999999999986 


Q ss_pred             CCCcEEEEEcC-CCc--EEecC-eEEEeeC-CCCChhhhhc
Q 018320          113 SNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG  148 (358)
Q Consensus       113 ~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~  148 (358)
                      +++++..+... +++  .+.++ .||+|+| +.+|.++.+.
T Consensus       237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence            45677666553 443  47785 6888776 6666666553

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.29  E-value=0.0028  Score=63.94  Aligned_cols=51  Identities=14%  Similarity=0.212  Sum_probs=37.5

Q ss_pred             HHHHHHh----CC--CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           89 YEEYYKS----KG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        89 ~~~~l~~----~g--V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      +.+.+++    .|  ++++++++|++|+.. ++....|.+.+| ++.+|.||+|+|...
T Consensus       217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        217 FVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS  273 (497)
T ss_pred             HHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence            3445566    66  888999999999863 233445666666 699999999999653

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.29  E-value=0.0028  Score=64.20  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -+|+|||||.+|+-+|..|+++|.+|.|+|+.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999999986

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.28  E-value=0.003  Score=64.93  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=30.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~   37 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKV   37 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence            47999999999999999999999999999975

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.26  E-value=0.00077  Score=71.72  Aligned_cols=33  Identities=30%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~   75 (358)
                      +|+|||||+.|+-+|..|++.  |.+|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999998  899999999765

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.24  E-value=0.004  Score=64.65  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~   62 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLF   62 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEeccC
Confidence            379999999999999999999999999999853

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.21  E-value=0.0045  Score=63.79  Aligned_cols=51  Identities=14%  Similarity=0.173  Sum_probs=36.9

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE---cCCCc--EEecCeEEEeeCCC
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGIR  140 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~vi~a~G~~  140 (358)
                      +.+.+++.||+++.++.++++.. +++++..+.   ..+|+  .+.++.||+|+|..
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            44445667899999999999875 456655543   34554  58999999999964

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.19  E-value=0.005  Score=63.55  Aligned_cols=56  Identities=20%  Similarity=0.351  Sum_probs=40.2

Q ss_pred             HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CCc--EEecC-eEEEeeC-CCCChhhhhc
Q 018320           93 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG  148 (358)
Q Consensus        93 l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~  148 (358)
                      .++.|+++++++.++++..+++|++..|... +++  .+.++ .||+|+| +.-|.++.+.
T Consensus       223 ~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        223 LKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            4466899999999999987667888776553 343  46787 5999997 5556666553

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.17  E-value=0.0051  Score=63.51  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus         9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~   39 (588)
T PRK08958          9 DAVVIGAGGAGMRAALQISQSGQSCALLSKV   39 (588)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence            6999999999999999999999999999985

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.16  E-value=0.0021  Score=61.97  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      .+|+|||||..|+-.|..|.++|.+|+++|.++.+
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            58999999999999999999999999999986543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.15  E-value=0.0072  Score=62.30  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=39.9

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-Cc--EEec-CeEEEeeCCC-CChhhhh
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGIR-PNTSLFE  147 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~~-p~~~l~~  147 (358)
                      +.+.+++.||++++++.++++.. +++++..|...+ ++  ++.+ +.||+|+|.- .|.++.+
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence            33445567899999999999875 467777766543 33  4675 6899999854 4445544

>PTZ00367 squalene epoxidase; Provisional

Probab=97.15  E-value=0.0034  Score=64.41  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            479999999999999999999999999999865

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.12  E-value=0.0053  Score=63.93  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus        52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~   83 (635)
T PLN00128         52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF   83 (635)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            69999999999999999999999999999853

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.11  E-value=0.0074  Score=62.40  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            47999999999999999999999999999985

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.11  E-value=0.00068  Score=69.78  Aligned_cols=103  Identities=15%  Similarity=0.194  Sum_probs=79.5

Q ss_pred             CCCcEEEEcCcH--HHHHHHHHHHhCCCcEEEEeeCCcccCccCC--------------HHHHHHHHHHHHhCCCEEEcC
Q 018320           40 SGGNAVVIGGGY--IGMECAASLVINKINVTMVFPEAHCMARLFT--------------PKIASYYEEYYKSKGVKFVKG  103 (358)
Q Consensus        40 ~~~~vvVIGgG~--~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~--------------~~~~~~~~~~l~~~gV~v~~~  103 (358)
                      .++++.|+|+|+  ++.|++..+...+.+++++.+.+++++. ++              ..+.+.+.+.+++.||+++++
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~  234 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATH-LKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG  234 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhh-HHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence            467899999999  9999999999999999888766555543 22              356677788888999999999


Q ss_pred             CeeeEEEEcCCCcEEEEEcCC--Cc-EEecC-eEEEeeCCCCChh
Q 018320          104 TVLSSFDVDSNGKVVAVNLRD--GN-RLPTD-MVVVGIGIRPNTS  144 (358)
Q Consensus       104 ~~v~~i~~~~~g~v~~v~~~~--g~-~i~~D-~vi~a~G~~p~~~  144 (358)
                      +.++++.. +++++..+...+  +. .+.++ .||+|+|..++..
T Consensus       235 ~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~  278 (574)
T PRK12842        235 TPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHDL  278 (574)
T ss_pred             CEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchH
Confidence            99999986 457776665543  33 47786 7999999776543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.11  E-value=0.00063  Score=66.73  Aligned_cols=35  Identities=26%  Similarity=0.216  Sum_probs=32.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      ++|+|||||++|+|+|..|+++|.+|+|+++.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            58999999999999999999999999999987655

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.08  E-value=0.0026  Score=63.39  Aligned_cols=83  Identities=20%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      ++|+++|+|+|.+|+.+|..|++.|++|+++++.+.       +.+ ....+.|.+.|++++.+....            
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~------------   63 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPE------------   63 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcch------------
Confidence            478999999999999999999999999999987541       122 222344667788766543321            


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                           ...-.+|.||.++|..|+...+.
T Consensus        64 -----~~~~~~d~vv~~~g~~~~~~~~~   86 (450)
T PRK14106         64 -----EFLEGVDLVVVSPGVPLDSPPVV   86 (450)
T ss_pred             -----hHhhcCCEEEECCCCCCCCHHHH
Confidence                 01124799999999988877553

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.07  E-value=0.0059  Score=63.53  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~   41 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL   41 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            379999999999999999999999999999853

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.06  E-value=0.0041  Score=64.80  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++|||+|+.|..+|..++++|.+|.||++.
T Consensus       118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            6999999999999999999999999999964

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.05  E-value=0.0055  Score=63.15  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC---CcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g---~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.|   .+|+|+++.+
T Consensus         6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~   41 (577)
T PRK06069          6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ   41 (577)
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence            36999999999999999999998   8999999753

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.03  E-value=0.0096  Score=61.48  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=38.4

Q ss_pred             HHHHHHHhCCCEEEcCCeeeEEEEcCC---CcEEEEEc---CCCc--EEecCeEEEeeCCCC
Q 018320           88 YYEEYYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNL---RDGN--RLPTDMVVVGIGIRP  141 (358)
Q Consensus        88 ~~~~~l~~~gV~v~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~i~~D~vi~a~G~~p  141 (358)
                      .+.+.+++.||+++.++.++++..+++   |++..+..   .+|+  .+.++.||+|||...
T Consensus       145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            344455667899999999999875332   67666643   3554  578999999999644

>TIGR03452 mycothione_red mycothione reductase

Probab=96.99  E-value=0.0017  Score=64.86  Aligned_cols=93  Identities=17%  Similarity=0.267  Sum_probs=57.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------C------------------------c--cCC-HHH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------A------------------------R--LFT-PKI   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------~------------------------~--~~~-~~~   85 (358)
                      -.++|||+|+.|..+|.  +..|.+|.+||+.. +.         |                        .  .+| +.+
T Consensus         3 yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~   79 (452)
T TIGR03452         3 YDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI   79 (452)
T ss_pred             cCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence            37999999999988854  45799999999742 10         0                        0  011 001


Q ss_pred             --------HHHHH----HHH---HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           86 --------ASYYE----EYY---KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        86 --------~~~~~----~~l---~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                              .+.+.    +.+   ++.||+++.++..  +.  +.   ..|.+.+|+++.+|.+|+|||.+|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--~~--~~---~~V~~~~g~~~~~d~lIiATGs~p~~p  146 (452)
T TIGR03452        80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHAR--FV--GP---RTLRTGDGEEITGDQIVIAAGSRPYIP  146 (452)
T ss_pred             HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEE--Ee--cC---CEEEECCCcEEEeCEEEEEECCCCCCC
Confidence                    11110    111   2267888876542  22  22   235556788899999999999998643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.0036  Score=61.32  Aligned_cols=33  Identities=30%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      --.|+|||||-.|+|.|.+.++.|.+.+++...
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            348999999999999999999999999998763

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.94  E-value=0.01  Score=61.40  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ...|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            347999999999999999999999999999964

>PRK07395 L-aspartate oxidase; Provisional

Probab=96.93  E-value=0.0056  Score=62.71  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=28.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..++ .|.+|+|+++.+
T Consensus        10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~   41 (553)
T PRK07395         10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDT   41 (553)
T ss_pred             CCEEEECccHHHHHHHHHhh-cCCCEEEEEccC
Confidence            47999999999999999986 499999999854

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.91  E-value=0.0063  Score=61.76  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=28.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..|+|||+|..|+-+|..+++ |.+|+|+++.+
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~   35 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKT   35 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence            479999999999999999976 89999999854

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.87  E-value=0.00094  Score=60.53  Aligned_cols=93  Identities=18%  Similarity=0.342  Sum_probs=58.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE----------EE--cCCeeeE
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK----------FV--KGTVLSS  108 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~----------v~--~~~~v~~  108 (358)
                      +.+|||||..|+.||+.|+.+  ..+|.++..++-+-.-    .--..+-+++++..|+          +.  .+ .|..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~   75 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVT   75 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhh
Confidence            368999999999999999976  5688888776543221    1112222333332221          11  01 1223


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.    .-..+.+.+|.++.++.+++++|.+|...
T Consensus        76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPklq  107 (334)
T KOG2755|consen   76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ  107 (334)
T ss_pred             hcc----ccceEEecCCceeeEEEEEEecCCCccee
Confidence            321    11357889999999999999999999653

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.86  E-value=0.015  Score=60.10  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+|||+|..|+-+|..+++.|.+|+||++.+
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~   45 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP   45 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3579999999999999999999999999999743

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.85  E-value=0.012  Score=65.43  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .-.|||||+|..|+-+|...++.|.+|+++|+.+.
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~  443 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK  443 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            46799999999999999999999999999998643

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.83  E-value=0.0083  Score=56.12  Aligned_cols=45  Identities=29%  Similarity=0.311  Sum_probs=35.1

Q ss_pred             CCEEEcCCeeeEEEEcCCCcEEEEEcCC--C--cEEecCeEEEeeCCCCC
Q 018320           97 GVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        97 gV~v~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~vi~a~G~~p~  142 (358)
                      -+++.++++|+.|.. .+|++..|+.-|  |  ..+.+|.|++|+|--..
T Consensus       159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            467889999999985 788888777643  3  35889999999985544

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.82  E-value=0.014  Score=61.04  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=30.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~   38 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVP   38 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            469999999999999999999999999998743

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.81  E-value=0.0022  Score=63.59  Aligned_cols=90  Identities=19%  Similarity=0.268  Sum_probs=60.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--CcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  117 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v  117 (358)
                      .+|+|+|||.|.+|+|++..+++...+|++..+.  ....+.    .        ....++..+..  |..+.  +++  
T Consensus       185 ~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~----~--------~~~~~~~~~~~--i~~~~--e~~--  246 (448)
T KOG1399|consen  185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP----E--------ILGENLWQVPS--IKSFT--EDG--  246 (448)
T ss_pred             cCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc----c--------eeecceEEccc--ccccc--Ccc--
Confidence            5799999999999999999999998899888651  011110    0        01123333332  55554  333  


Q ss_pred             EEEEcCCCcEEecCeEEEeeCCCCChhhhhc
Q 018320          118 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG  148 (358)
Q Consensus       118 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  148 (358)
                       .+-+.++....+|.+|+|||..-...++..
T Consensus       247 -~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~  276 (448)
T KOG1399|consen  247 -SVFEKGGPVERVDRIIFCTGYKYKFPFLET  276 (448)
T ss_pred             -eEEEcCceeEEeeeEEEeeeeEeecceecc
Confidence             244566778899999999998766666554

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.81  E-value=0.0017  Score=65.51  Aligned_cols=40  Identities=23%  Similarity=0.304  Sum_probs=36.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      +.++|+|||||.+|+.+|..|.+.|.+|+|+|.++++..+
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR   53 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR   53 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence            4679999999999999999999999999999998877544

>PRK05320 rhodanese superfamily protein; Provisional

Probab=96.79  E-value=0.0015  Score=60.08  Aligned_cols=73  Identities=14%  Similarity=0.028  Sum_probs=62.8

Q ss_pred             EEEeCCCHHHHHHHHHHHHcCCCcccHHH-HhhcCCcccCCcCC----CCCCCCccccccccccccCccccchhhhhhHH
Q 018320          265 SFLEGGTKEEYEAIAKATRLQPVVEDLAE-LETQGLGFALAVSQ----KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVI  339 (358)
Q Consensus       265 a~~vg~~~~~~~~~a~ai~~~~~~~dl~~-l~~~~~~yap~~~~----~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  339 (358)
                      +++-| ..++++.++++|+.++++.||.. ++   ++|+|||++    ++++.+.+++.+.|.+.+..+.++++|+.+.+
T Consensus        46 ~t~~g-~~~~id~~~~~l~~~~~~~dl~~k~~---~~~~~pF~~l~vk~k~eiv~~g~~~~n~~~~~~~~is~~el~~~l  121 (257)
T PRK05320         46 LFLAG-TREAIDAFYAWLRADARFADLQVKES---LSDSQPFRRMLVKLKREIITMKRPAIRPELGRAPSVDAATLKRWL  121 (257)
T ss_pred             EEEEe-eHHHHHHHHHHHhhCCCccCceeecc---cccCCCchhccchhhhHHhhcCCcccCcccCcCceeCHHHHHHHH
Confidence            44444 46789999999999999999986 76   899999999    89999999998999999999999999887765


Q ss_pred             HH
Q 018320          340 LA  341 (358)
Q Consensus       340 ~~  341 (358)
                      ..
T Consensus       122 ~~  123 (257)
T PRK05320        122 DQ  123 (257)
T ss_pred             hc
Confidence            44

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.78  E-value=0.018  Score=59.01  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999876

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=96.72  E-value=0.0098  Score=57.46  Aligned_cols=103  Identities=19%  Similarity=0.280  Sum_probs=75.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC------CCcEEEEeeCCcccCcc----------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMARL----------------------------------   80 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~------g~~Vtlv~~~~~~l~~~----------------------------------   80 (358)
                      .-.|+|||+|+.|+..|..|.++      ..+|.++|++..+....                                  
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~  155 (621)
T KOG2415|consen   76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF  155 (621)
T ss_pred             cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence            35799999999999999988865      45688888854331000                                  


Q ss_pred             ----------------CC---------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-----------
Q 018320           81 ----------------FT---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----------  124 (358)
Q Consensus        81 ----------------~~---------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-----------  124 (358)
                                      ++         ..+..++-+..++.||+++++..+.++--++||.+..+.+.|           
T Consensus       156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd  235 (621)
T KOG2415|consen  156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKD  235 (621)
T ss_pred             eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccc
Confidence                            00         124555667778899999999999999888899888887654           


Q ss_pred             ----CcEEecCeEEEeeCCCCCh
Q 018320          125 ----GNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       125 ----g~~i~~D~vi~a~G~~p~~  143 (358)
                          |-++.+..-|+|-|-+-..
T Consensus       236 ~FerGme~hak~TifAEGc~G~L  258 (621)
T KOG2415|consen  236 TFERGMEFHAKVTIFAEGCHGSL  258 (621)
T ss_pred             cccccceecceeEEEeccccchh
Confidence                2357788888888876543

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.69  E-value=0.00081  Score=62.60  Aligned_cols=104  Identities=24%  Similarity=0.347  Sum_probs=65.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC-CC-cEEEEeeCCcc-cCcc---CCHHHHHHHH-----HHHHhCCCEEEcCCeeeEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEAHC-MARL---FTPKIASYYE-----EYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~-g~-~Vtlv~~~~~~-l~~~---~~~~~~~~~~-----~~l~~~gV~v~~~~~v~~i  109 (358)
                      .-+++|||||..|+.+|..+.+. |. +|-|+|+.+.- ..+.   ...-+...-.     ..+--.|.+.+. ..|+++
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f  117 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEF  117 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHhc
Confidence            45799999999999999998865 44 78899876532 1110   1111111000     001112222222 456777


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ  149 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~  149 (358)
                      +++++    .|.+.+|++|.+|.+|+|+|..-+.+-++..
T Consensus       118 ~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkGl  153 (446)
T KOG3851|consen  118 NPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKGL  153 (446)
T ss_pred             CCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence            76332    5778899999999999999998877766544

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.67  E-value=0.025  Score=58.43  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=29.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.  |.+|+|+++.+
T Consensus         5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~   39 (582)
T PRK09231          5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY   39 (582)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            3699999999999999999987  47999999853

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=96.66  E-value=0.0023  Score=63.42  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCccc
Q 018320           42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l   77 (358)
                      ++|+|||||.+|+-+|..|++.|  .+|+|+|..+++.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            47999999999999999999988  8999999987764

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.63  E-value=0.033  Score=57.21  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -.|+|||+|..|+-+|..+++.|.+|.|+|+.
T Consensus         7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~   38 (557)
T PRK12844          7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ   38 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            36999999999999999999999999999975

>PLN02815 L-aspartate oxidase

Probab=96.62  E-value=0.018  Score=59.54  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.| +|.|+++.+
T Consensus        30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~   61 (594)
T PLN02815         30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDE   61 (594)
T ss_pred             cCEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence            37999999999999999999999 899999854

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.62  E-value=0.013  Score=59.64  Aligned_cols=33  Identities=30%  Similarity=0.547  Sum_probs=28.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .-.|+|||+|..|+-+|..++  +.+|+|+++.+.
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            358999999999999998886  579999988653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.61  E-value=0.014  Score=57.38  Aligned_cols=112  Identities=20%  Similarity=0.405  Sum_probs=69.8

Q ss_pred             CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeC
Q 018320           64 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIG  138 (358)
Q Consensus        64 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G  138 (358)
                      ..+|++....-+-..    ...-+++.+.=++.||+++.+ ++.+|....++++ .|...|   |  .++++|+|++++|
T Consensus       400 d~~v~I~YmDiRafG----~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~G  473 (622)
T COG1148         400 DTDVTIYYMDIRAFG----KDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATG  473 (622)
T ss_pred             CcceeEEEEEeeccC----ccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-EEEEEeccCccceecccceEEEeec
Confidence            457888776554333    222333444334779999977 5666665455552 233332   3  4789999999999


Q ss_pred             CCCChhh--hhcc--ccc-ccCcEEEe-cc---ccCCCCcEEEEcccccccc
Q 018320          139 IRPNTSL--FEGQ--LTL-EKGGIKVT-GR---LQSSNSSVYAVGDVAAFPL  181 (358)
Q Consensus       139 ~~p~~~l--~~~~--~~~-~~g~i~vd-~~---~~t~~~~VyAiGD~~~~~~  181 (358)
                      ..|....  +...  +.. ++|+++.. ..   .+|+.++||.+|=|.++.+
T Consensus       474 mep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkd  525 (622)
T COG1148         474 MEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKD  525 (622)
T ss_pred             cccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCcc
Confidence            9986542  2222  343 56777665 33   3468899999998877543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.60  E-value=0.011  Score=57.33  Aligned_cols=96  Identities=26%  Similarity=0.440  Sum_probs=66.3

Q ss_pred             EEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc--CccCCHHH---------HHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320           44 AVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--ARLFTPKI---------ASYYEEYYKSKGVKFVKGTVLSSFD  110 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l--~~~~~~~~---------~~~~~~~l~~~gV~v~~~~~v~~i~  110 (358)
                      ++|||+|..|+.+|..|.+.  ..+++++...+...  ...+...+         .........+.++++++++++++++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            58999999999999998885  55788777664331  11011111         1110111146789999999999997


Q ss_pred             EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      . +.   ..+.+.+| ++.+|.+++|+|.+|...
T Consensus        81 ~-~~---~~v~~~~g-~~~yd~LvlatGa~~~~~  109 (415)
T COG0446          81 P-EN---KVVLLDDG-EIEYDYLVLATGARPRPP  109 (415)
T ss_pred             C-CC---CEEEECCC-cccccEEEEcCCCcccCC
Confidence            5 22   24667777 899999999999998875

>PRK12839 hypothetical protein; Provisional

Probab=96.60  E-value=0.026  Score=58.13  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus         9 ~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~   40 (572)
T PRK12839          9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA   40 (572)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            47999999999999999999999999999974

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.58  E-value=0.025  Score=58.11  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|||||+| .|+.+|...++.|.+|.|+|+.+
T Consensus        17 ~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~   48 (564)
T PRK12845         17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS   48 (564)
T ss_pred             eCEEEECCc-HHHHHHHHHHHCCCcEEEEecCC
Confidence            479999999 89999999999999999999854

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.58  E-value=0.031  Score=57.70  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++.  |.+|+|+++.+
T Consensus         4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~   38 (580)
T TIGR01176         4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY   38 (580)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            3699999999999999999987  57999999854

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07233 hypothetical protein; Provisional

Probab=96.54  E-value=0.0033  Score=61.85  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=33.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +|+|||||..|+.+|..|++.|.+|+|+|+.+++..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            589999999999999999999999999999887643

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.52  E-value=0.043  Score=56.91  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=28.6

Q ss_pred             cEEEEcCcHHHHHHHHHHH----hCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLV----INKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~----~~g~~Vtlv~~~~   74 (358)
                      .|+|||+|..|+-+|..++    +.|.+|+|+++.+
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~   36 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN   36 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence            4899999999999999998    6799999998853

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PLN02268 probable polyamine oxidase

Probab=96.49  E-value=0.0036  Score=62.03  Aligned_cols=38  Identities=29%  Similarity=0.429  Sum_probs=34.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      .+|+|||+|.+|+-+|..|.+.|.+|+|+|.++++..+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr   38 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR   38 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence            37999999999999999999999999999998877544

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=0.0036  Score=62.04  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=34.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      +||+|+|||..|+.+|..|++.|++|||+|.++++..+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk   38 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK   38 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence            58999999999999999999999999999999877543

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.47  E-value=0.012  Score=58.24  Aligned_cols=87  Identities=13%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             HHHHHHhC--CCcEEEEeeCCcc------cCcc----CC-H-HHHHH-HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEE
Q 018320           56 CAASLVIN--KINVTMVFPEAHC------MARL----FT-P-KIASY-YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  120 (358)
Q Consensus        56 ~A~~L~~~--g~~Vtlv~~~~~~------l~~~----~~-~-~~~~~-~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v  120 (358)
                      +|..|+++  ..+|||+++.+.+      ++..    .. + +.... ..+.+.+.||+++.++.|++++. ++..+ .+
T Consensus         2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~-~~~~v-~~   79 (427)
T TIGR03385         2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVND-ERQTV-VV   79 (427)
T ss_pred             HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEEC-CCCEE-EE
Confidence            46667765  4689999998753      1111    11 1 11111 23344788999999999999975 33332 23


Q ss_pred             EcC-CCcEEe--cCeEEEeeCCCCChh
Q 018320          121 NLR-DGNRLP--TDMVVVGIGIRPNTS  144 (358)
Q Consensus       121 ~~~-~g~~i~--~D~vi~a~G~~p~~~  144 (358)
                      ... +++++.  +|.||+|||.+|+..
T Consensus        80 ~~~~~~~~~~~~yd~lIiATG~~p~~~  106 (427)
T TIGR03385        80 RNNKTNETYEESYDYLILSPGASPIVP  106 (427)
T ss_pred             EECCCCCEEecCCCEEEECCCCCCCCC
Confidence            322 345777  999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.45  E-value=0.036  Score=56.62  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|..|+-+|..+++. .+|+|+++.+
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~   40 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP   40 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence            3799999999999999999886 8999999854

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.43  E-value=0.029  Score=56.53  Aligned_cols=33  Identities=27%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .-.++|||||..|+-+|..++.+|.+|.|+|+.
T Consensus        12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~   44 (532)
T COG0578          12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKG   44 (532)
T ss_pred             CCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence            458999999999999999999999999999994

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.43  E-value=0.0082  Score=50.27  Aligned_cols=83  Identities=22%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC
Q 018320           44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  123 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~  123 (358)
                      |+|+|+|.+|.-+|..|++.|.+|+++.|.++              .+.+++.|+.+.....-..+..       .....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~--------------~~~~~~~g~~~~~~~~~~~~~~-------~~~~~   59 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPR--------------LEAIKEQGLTITGPDGDETVQP-------PIVIS   59 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHH--------------HHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcccc--------------HHhhhheeEEEEecccceeccc-------ccccC
Confidence            68999999999999999999999999987531              2336777998887652112211       11122


Q ss_pred             CC--cEEecCeEEEeeCCCCChhhhh
Q 018320          124 DG--NRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       124 ~g--~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                      +.  ..-++|.||+++=.....+.++
T Consensus        60 ~~~~~~~~~D~viv~vKa~~~~~~l~   85 (151)
T PF02558_consen   60 APSADAGPYDLVIVAVKAYQLEQALQ   85 (151)
T ss_dssp             SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred             cchhccCCCcEEEEEecccchHHHHH
Confidence            21  3356899999986555544444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07208 hypothetical protein; Provisional

Probab=96.38  E-value=0.0049  Score=61.87  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +.++|+|||||++|+-+|..|.+.|.+|+|+|+.+++..
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            357899999999999999999999999999999876643

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.34  E-value=0.0093  Score=57.34  Aligned_cols=102  Identities=20%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc--cCcc------------------CCH------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC--MARL------------------FTP------------------   83 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~--l~~~------------------~~~------------------   83 (358)
                      .+++||.|+.++.+|..|...+ .++..+++.+.+  .+..                  -+|                  
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            6899999999999999999886 789999987643  0000                  011                  


Q ss_pred             ------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC--cEEEEEcC----CCcEEecCeEEEeeCCCCChh
Q 018320           84 ------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KVVAVNLR----DGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g--~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                  +..++++-..++.+-.+..+.+|++|+...++  ....|.+.    +++++.++.|++++|..|...
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                        11222222222344448889999999874443  34455552    346899999999999888764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.32  E-value=0.015  Score=53.75  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccC---ccC---CHHH----HHHHHHHHHhCCCEEEcCCeeeE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMA---RLF---TPKI----ASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~---~~~---~~~~----~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      ...+|+|+|.|-+|.++|..|++.| .++||++...--..   +++   ..++    .+.+.+.+.+    +.++..|+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~----INP~~~V~~  104 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQ----INPECRVTV  104 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHh----HCCCcEEEE
Confidence            5789999999999999999999999 58999987532211   111   1222    2334444443    344555655


Q ss_pred             EEEcCCCcEEEEEcCCC-cEE--ecCeEEEeeCCC-CChhhhhcccccccCcEEEeccccCCCCcEEEEccccccc
Q 018320          109 FDVDSNGKVVAVNLRDG-NRL--PTDMVVVGIGIR-PNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP  180 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g-~~i--~~D~vi~a~G~~-p~~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~  180 (358)
                      +..       .+...+- ..+  .+|.||.|++.. +...+.+......-..|.+-.-..--+|.-+-++|.....
T Consensus       105 i~~-------~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~~t~  173 (268)
T PRK15116        105 VDD-------FITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTI  173 (268)
T ss_pred             Eec-------ccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeeeccc
Confidence            531       0110010 112  489999999853 3332322111111111222111222456677777776654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.32  E-value=0.03  Score=55.18  Aligned_cols=88  Identities=23%  Similarity=0.376  Sum_probs=53.8

Q ss_pred             HHHHHHhC-CCEEEcCCeeeEEEEcCCCc-EEEEE-cC--CCcEEecCeEEEeeCCCCChhhhhccccc--ccCcEEEe-
Q 018320           89 YEEYYKSK-GVKFVKGTVLSSFDVDSNGK-VVAVN-LR--DGNRLPTDMVVVGIGIRPNTSLFEGQLTL--EKGGIKVT-  160 (358)
Q Consensus        89 ~~~~l~~~-gV~v~~~~~v~~i~~~~~g~-v~~v~-~~--~g~~i~~D~vi~a~G~~p~~~l~~~~~~~--~~g~i~vd-  160 (358)
                      +.+.+.+. |++++++++|+.|+..++|. ...+. ..  +..++.++.|++..|...-.-+-+.++..  .-|+..|. 
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG  266 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSG  266 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccc
Confidence            34456555 99999999999999877773 22222 22  33579999999999976443333333322  22444443 


Q ss_pred             ccccCCCC--------cEEEEccc
Q 018320          161 GRLQSSNS--------SVYAVGDV  176 (358)
Q Consensus       161 ~~~~t~~~--------~VyAiGD~  176 (358)
                      .+++++.|        .||-.-.+
T Consensus       267 ~fl~~~n~~vv~~H~aKVYgka~v  290 (488)
T PF06039_consen  267 QFLRCKNPEVVAQHNAKVYGKASV  290 (488)
T ss_pred             eEEecCCHHHHHHhcceeeeeCCC
Confidence            44555433        46665554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.31  E-value=0.0051  Score=62.09  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=33.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      ..++||||||.-|+-+|..|++.|.+|+|+|+.+.+
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~   38 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV   38 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence            468999999999999999999999999999987665

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.26  E-value=0.012  Score=54.19  Aligned_cols=34  Identities=26%  Similarity=0.478  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCC------CcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINK------INVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g------~~Vtlv~~~   73 (358)
                      ..++++|||||.+|+-+|..|.+.+      ..|||+|..
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            3589999999999999999999987      689999873

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=96.12  E-value=0.0075  Score=60.81  Aligned_cols=36  Identities=33%  Similarity=0.372  Sum_probs=33.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            579999999999999999999999999999987663

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.12  E-value=0.0073  Score=60.22  Aligned_cols=35  Identities=29%  Similarity=0.429  Sum_probs=32.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~   76 (358)
                      ++|+|||||.+|+-+|..|++.    |.+|+|+|+++++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV   41 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence            5899999999999999999998    9999999998766

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.09  E-value=0.0075  Score=57.69  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=31.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .-.|+|||+|.+|..+|..|++.|.+|++|||.
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            346999999999999999999999999999996

>PLN02576 protoporphyrinogen oxidase

Probab=96.09  E-value=0.0085  Score=60.44  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~   78 (358)
                      ...+|+|||||.+|+-+|..|.+. |.+|+|+|..+++..
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            356899999999999999999999 999999999887644

>PLN03000 amine oxidase

Probab=96.08  E-value=0.014  Score=62.21  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=42.8

Q ss_pred             cCHHHHHHHHHHHhc-CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           24 RDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        24 ~~~~da~~i~~~l~~-~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      .++.++..+.+.+.. .+.++|+|||+|+.|+.+|..|.+.|.+|+++|..+++.
T Consensus       166 in~g~~~~~~~~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        166 INFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             ccHHHHHHHHhhccccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            456666666655432 235799999999999999999999999999999976653

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.01  E-value=0.0072  Score=47.51  Aligned_cols=34  Identities=32%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++++|||||..|..-+..|.+.|.+||++.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            6899999999999999999999999999999765

>TIGR02734 crtI_fam phytoene desaturase

Probab=96.00  E-value=0.0072  Score=61.09  Aligned_cols=34  Identities=38%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      |+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            6899999999999999999999999999987763

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.99  E-value=0.0089  Score=57.93  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=31.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+|||||.+|+.+|..|+++|.+|+++++..
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            4689999999999999999999999999999754

>TIGR02731 phytoene_desat phytoene desaturase

Probab=95.95  E-value=0.01  Score=59.17  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +|+|||||..|+-+|..|.+.|.+|+|+|+.+++..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG   36 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG   36 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            589999999999999999999999999999876543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=95.93  E-value=0.0093  Score=59.63  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC------CCcEEEEeeCCcccC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMA   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~------g~~Vtlv~~~~~~l~   78 (358)
                      ++|+|||||.+|+-+|..|++.      |.+|+|+|.++++..
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            5799999999999999999986      379999999887643

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.87  E-value=0.032  Score=55.79  Aligned_cols=85  Identities=21%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  122 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~  122 (358)
                      ++.|||.|.+|+.+|..|.+.|.+|++.++.+..  . .     ....+.|++.|++++.+.... .+        .+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~--~-~-----~~~~~~l~~~gi~~~~g~~~~-~~--------~~~~   64 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP--E-L-----LERQQELEQEGITVKLGKPLE-LE--------SFQP   64 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch--h-h-----HHHHHHHHHcCCEEEECCccc-hh--------hhhH
Confidence            5899999999999999999999999999876542  1 1     122345677799998764321 00        0000


Q ss_pred             CCCcEEecCeEEEeeCCCCChhhhh
Q 018320          123 RDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       123 ~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                         ..-.+|.|+++.|..|+...+.
T Consensus        65 ---~~~~~d~vv~s~gi~~~~~~~~   86 (459)
T PRK02705         65 ---WLDQPDLVVVSPGIPWDHPTLV   86 (459)
T ss_pred             ---HhhcCCEEEECCCCCCCCHHHH
Confidence               0124789999999988876554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.84  E-value=0.11  Score=56.59  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||||..|+-+|..+++.|.+|+|+++.+
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~   46 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH   46 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            369999999999999999999999999998754

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.83  E-value=0.033  Score=49.50  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++++|||||.+|..-+..|.+.|.+||++.+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            6899999999999999999999999999999753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.82  E-value=0.015  Score=49.49  Aligned_cols=32  Identities=34%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVF   71 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~   71 (358)
                      .+++++|||||.+|..-+..|.+.|++|++|.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            68999999999999999999999999999994

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.79  E-value=0.045  Score=54.76  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           28 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        28 da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      |..+++..+   .++++.|+|.|.+|+.+|..|.+.|.+|++.++.+...   . +..    .+.|++.|+.+..+....
T Consensus         4 ~~~~~~~~~---~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~-~~~----~~~l~~~gi~~~~~~~~~   72 (458)
T PRK01710          4 DFNEFKKFI---KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---L-GEV----SNELKELGVKLVLGENYL   72 (458)
T ss_pred             hHHHHhhhh---cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---c-hHH----HHHHHhCCCEEEeCCCCh
Confidence            344455554   46899999999999999999999999999998765311   1 111    233667788887542210


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                                .       ..-.+|.||+++|..|..+.+.
T Consensus        73 ----------~-------~~~~~dlVV~Spgi~~~~p~~~   95 (458)
T PRK01710         73 ----------D-------KLDGFDVIFKTPSMRIDSPELV   95 (458)
T ss_pred             ----------H-------HhccCCEEEECCCCCCCchHHH
Confidence                      0       0123799999999998766543

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=95.78  E-value=0.014  Score=54.58  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=35.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL   80 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~   80 (358)
                      +.+|||+|+.|+-+|..++++|.+|.||++++++....
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa   40 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA   40 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence            68999999999999999999999999999999987653

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.75  E-value=0.056  Score=53.53  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=28.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|+|||+|..|+-+|..|.+. .+|+++.+.+
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~   39 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGP   39 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCC
Confidence            799999999999999999987 9999999864

>PLN02529 lysine-specific histone demethylase 1

Probab=95.72  E-value=0.015  Score=61.31  Aligned_cols=36  Identities=19%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      +.++|+|||+|+.|+.+|..|+++|.+|+++|..++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            357899999999999999999999999999998654

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=95.65  E-value=0.014  Score=57.76  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~   76 (358)
                      ++++|||||.+|+..|..|++.+  ++|||+|+++++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            47999999999999999999999  999999998765

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.65  E-value=0.014  Score=56.41  Aligned_cols=98  Identities=22%  Similarity=0.353  Sum_probs=66.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcc--cCccCCHHH--------HHHH---------------------
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC--MARLFTPKI--------ASYY---------------------   89 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~--l~~~~~~~~--------~~~~---------------------   89 (358)
                      .-+|||+|..+...+......  +.+|.+|...+.+  +.+.++.++        ...+                     
T Consensus       180 p~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ffv  259 (659)
T KOG1346|consen  180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFV  259 (659)
T ss_pred             ceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCccee
Confidence            478999998887766666544  6678777655432  111122111        1000                     


Q ss_pred             ----HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           90 ----EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        90 ----~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                          ......-||-+..+.++.++.. ++.   .|.+.||.+|.+|.+++|||.+|...
T Consensus       260 speDLp~~~nGGvAvl~G~kvvkid~-~d~---~V~LnDG~~I~YdkcLIATG~~Pk~l  314 (659)
T KOG1346|consen  260 SPEDLPKAVNGGVAVLRGRKVVKIDE-EDK---KVILNDGTTIGYDKCLIATGVRPKKL  314 (659)
T ss_pred             ChhHCcccccCceEEEeccceEEeec-ccC---eEEecCCcEeehhheeeecCcCcccc
Confidence                1122345899999999999975 332   57899999999999999999999864

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=95.57  E-value=0.018  Score=56.06  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +++|||||.+|+.+|..|++.|.+|+++++++++..
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            689999999999999999999999999999876544

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=95.53  E-value=0.054  Score=43.56  Aligned_cols=33  Identities=12%  Similarity=0.156  Sum_probs=22.2

Q ss_pred             HHHHHcCCCCCCCCCCCCeEEEEec-CceEEEeecc
Q 018320          203 AVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDN  237 (358)
Q Consensus       203 aa~~i~g~~~~~~~~~~p~~~~~~~-~~~~~~~G~~  237 (358)
                      |++||.|..  .+|...|+||+.++ ++.+..+|..
T Consensus         1 AG~NM~ga~--~py~hq~~fwSdlgp~vgyeAvG~~   34 (133)
T PF14721_consen    1 AGENMTGAN--KPYWHQSMFWSDLGPDVGYEAVGIV   34 (133)
T ss_dssp             HHHHHTTT-----S-S--EEEEESSTTEEEEEEES-
T ss_pred             CCccccCCC--CcccccchhHhhcCCCcCeEEeeec
Confidence            578999876  68999999999996 7888888853

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.49  E-value=0.14  Score=49.91  Aligned_cols=84  Identities=12%  Similarity=0.110  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhCCCcEEEEeeCCcccCcc-CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEec
Q 018320           53 GMECAASLVINKINVTMVFPEAHCMARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPT  130 (358)
Q Consensus        53 gle~A~~L~~~g~~Vtlv~~~~~~l~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~  130 (358)
                      --++-..+.++|... ..++..+++|.. -..++.+.+...+++.||+++++++|++|+  +++  ..+.+.+ +..+.+
T Consensus        56 ~~d~~~fF~~~Gi~~-~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a  130 (376)
T TIGR03862        56 AVALQDWARGLGIET-FVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEA  130 (376)
T ss_pred             HHHHHHHHHHCCCce-EECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEec
Confidence            344556677778753 345666777732 346788889999999999999999999993  233  3455543 356999


Q ss_pred             CeEEEeeCCCC
Q 018320          131 DMVVVGIGIRP  141 (358)
Q Consensus       131 D~vi~a~G~~p  141 (358)
                      |.||+|+|..+
T Consensus       131 ~~vIlAtGG~s  141 (376)
T TIGR03862       131 DAVVLALGGAS  141 (376)
T ss_pred             CEEEEcCCCcc
Confidence            99999999764

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.48  E-value=0.016  Score=50.37  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +|.|||+|..|..+|..++..|.+|+++++.+.-+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~   36 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE   36 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            589999999999999999999999999998765443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.45  E-value=0.019  Score=57.71  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      +++|||||..|+-+|..|++.|.+|+++|+.+.+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            58999999999999999999999999999987664

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=95.42  E-value=0.018  Score=58.02  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=29.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~   74 (358)
                      +|+|||||.+|+.+|..|+++  |.+|+|+|+.+
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            589999999999999999997  99999999954

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.40  E-value=0.12  Score=48.87  Aligned_cols=33  Identities=24%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..++.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~   37 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            358999999999999999999999999999885

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.36  E-value=0.026  Score=50.05  Aligned_cols=33  Identities=24%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      .+++++|||||.+|...+..|.+.|.+||++.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            689999999999999999999999999999964

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.35  E-value=0.047  Score=54.31  Aligned_cols=83  Identities=20%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|+|+|-+|+.+|..|++.|.+|++.++.+..     ...    ..+.|++.|+++..+.....+          
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~-----~~~----~~~~l~~~g~~~~~~~~~~~~----------   64 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS-----ENP----EAQELLEEGIKVICGSHPLEL----------   64 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc-----chh----HHHHHHhcCCEEEeCCCCHHH----------
Confidence            4689999999999999999999999999998765321     111    123456678887644221110          


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                        +.+    .+|.||.+.|..++..++.
T Consensus        65 --~~~----~~d~vV~s~gi~~~~~~~~   86 (447)
T PRK02472         65 --LDE----DFDLMVKNPGIPYTNPMVE   86 (447)
T ss_pred             --hcC----cCCEEEECCCCCCCCHHHH
Confidence              000    3799999999888776554

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=95.34  E-value=0.024  Score=55.45  Aligned_cols=40  Identities=18%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      +..+|+|||+|++||-.|..|.+.|.+|+|+|-++++..+
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR   45 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence            4678999999999999999999999999999998877544

>TIGR02730 carot_isom carotene isomerase

Probab=95.34  E-value=0.021  Score=57.61  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      +++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            5899999999999999999999999999998765

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02487 zeta-carotene desaturase

Probab=95.31  E-value=0.024  Score=58.22  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ++|+|||+|..|+-+|..|.+.|++|+|+|+.+++.
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g  111 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG  111 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence            499999999999999999999999999999987663

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.25  E-value=0.059  Score=53.67  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=56.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHh--CCCEEEcCCeeeEEEEcCCCcE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKV  117 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v  117 (358)
                      .+++++|+|.|-+|+.+|..|+++|.+|++.+..+..      +.     .+.|++  .||.+..+.....         
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-----~~~l~~~~~gi~~~~g~~~~~---------   63 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-----VAQIGKMFDGLVFYTGRLKDA---------   63 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-----HHHHhhccCCcEEEeCCCCHH---------
Confidence            4689999999999999999999999999998765431      11     122443  4777664421100         


Q ss_pred             EEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          118 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       118 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                              ..-.+|.||+++|..|..+.+.
T Consensus        64 --------~~~~~d~vv~spgi~~~~p~~~   85 (445)
T PRK04308         64 --------LDNGFDILALSPGISERQPDIE   85 (445)
T ss_pred             --------HHhCCCEEEECCCCCCCCHHHH
Confidence                    0124799999999999877654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=95.21  E-value=0.028  Score=59.69  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      +.++|+|||+|..|+.+|..|.+.|.+|+++|+.+++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            3578999999999999999999999999999997655

>PLN02612 phytoene desaturase

Probab=95.11  E-value=0.033  Score=57.34  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=34.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ++++|+|||+|..|+-+|..|.+.|.+|+++|+.+++.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g  129 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG  129 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            46789999999999999999999999999999976543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.05  E-value=0.1  Score=49.33  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=30.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++|+|+|.+|.-+|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999999999999999853

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=94.94  E-value=0.032  Score=57.96  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=30.2

Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      ++++|++|++||+|||+.....        .+...+..+|++++.++.
T Consensus       389 ~~~~T~v~glyA~Ge~~~~~~~--------~l~~~s~~~g~~ag~~~~  428 (608)
T PRK06854        389 YNRMTTVEGLFAAGDVVGGSPH--------KFSSGSFAEGRIAAKAAV  428 (608)
T ss_pred             cccccCCCCEEEeeecCCCCcc--------hhHHHHHHHHHHHHHHHH
Confidence            9999999999999999753211        245566778888887765

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.94  E-value=0.075  Score=50.30  Aligned_cols=82  Identities=23%  Similarity=0.304  Sum_probs=55.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  122 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~  122 (358)
                      ++.|+|+|.+|.=+|..|++.|.+|+++.|.++              .+.+++.|+.+.....  ...      ......
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~   59 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA   59 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence            689999999999999999999988999888653              2346677888876544  100      001111


Q ss_pred             CC-CcEEecCeEEEeeCCCCChhhh
Q 018320          123 RD-GNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       123 ~~-g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                      .+ ...-++|.||+++=.....+.+
T Consensus        60 ~~~~~~~~~Dlviv~vKa~q~~~al   84 (307)
T COG1893          60 TDAEALGPADLVIVTVKAYQLEEAL   84 (307)
T ss_pred             cChhhcCCCCEEEEEeccccHHHHH
Confidence            11 2234799999998655444433

>PLN02568 polyamine oxidase

Probab=94.92  E-value=0.039  Score=56.41  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=33.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC-----CcEEEEeeCCcccC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCMA   78 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g-----~~Vtlv~~~~~~l~   78 (358)
                      ..+|+|||+|..|+.+|..|++.|     .+|+|+|+.+++..
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            468999999999999999999887     89999999876643

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.88  E-value=0.15  Score=48.76  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|.|||.|.+|.-+|..|++.|.+|+++.|.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            36999999999999999999999999999863

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.86  E-value=0.095  Score=43.25  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             cCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeC
Q 018320           38 SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPE   73 (358)
Q Consensus        38 ~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~   73 (358)
                      +.++++++|||+|-+|-.++..|...|.+ |+++.|.
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            34689999999999999999999999987 9999874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.80  E-value=0.074  Score=53.24  Aligned_cols=78  Identities=18%  Similarity=0.097  Sum_probs=56.3

Q ss_pred             CCCcEEEEcCcHHHHH-HHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           40 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      +.+++.|+|-|-+|+. +|..|.++|.+|++.+..+.       +.    . +.|++.|+++..+.....          
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~----~-~~l~~~gi~~~~~~~~~~----------   63 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV----T-QRLLELGAIIFIGHDAEN----------   63 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHHH----------
Confidence            5689999999999999 79999999999999876542       11    1 236677888875321100          


Q ss_pred             EEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          119 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       119 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                         +     -.+|.||++.|..|+.+.+.
T Consensus        64 ---~-----~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421         64 ---I-----KDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             ---C-----CCCCEEEECCCCCCCCHHHH
Confidence               1     13799999999988776543

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=94.79  E-value=0.12  Score=48.79  Aligned_cols=56  Identities=21%  Similarity=0.338  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      ..+...+.+.+++.|++++.++.|++++. +++.+..|.+.+| ++.+|.||+|+|..
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~  192 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAW  192 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence            45677778888999999999999999986 4555666777666 79999999999954

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.79  E-value=0.15  Score=47.89  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=28.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      ++.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            689999999999999999999999999987

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=94.78  E-value=0.53  Score=45.40  Aligned_cols=37  Identities=24%  Similarity=0.211  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      ..-.++|||+|+-|.-+|...+++|.+...||.+..+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L   74 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL   74 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence            3568999999999999999999999999999986544

>PLN02676 polyamine oxidase

Probab=94.74  E-value=0.048  Score=55.04  Aligned_cols=39  Identities=15%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~   78 (358)
                      ...+|+|||+|+.|+-+|..|++.|. +|+++|+.+++..
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            45689999999999999999999998 6999999877644

>PLN02612 phytoene desaturase

Probab=94.71  E-value=0.12  Score=53.23  Aligned_cols=56  Identities=14%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  138 (358)
                      ..+.+.+.+.|++.|.++++++.|++|+.++++.+..+.+.+|+++.+|.||++++
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            45667788888889999999999999987667766678888899999999999976

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=94.71  E-value=0.036  Score=55.99  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~   74 (358)
                      -.|+|||||.+|+.+|..|+++  |.+|+|+|+.+
T Consensus         6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            4799999999999999999985  78999999865

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=94.70  E-value=0.18  Score=48.38  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=58.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCcc------CCHHH---HHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL------FTPKI---ASYYEEYYKSKGVKFVKGTVLSSFD  110 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~------~~~~~---~~~~~~~l~~~gV~v~~~~~v~~i~  110 (358)
                      .+|.|||+|+.|+-.|..|.++  +++|+++|+.|.++.-.      -.|+.   .+.+.+.+++....+..|.+|-   
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG---   97 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVG---   97 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceec---
Confidence            4999999999999999998884  68999999988764310      12333   3444555666667777665431   


Q ss_pred             EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                        .+     +.+.+ -+-.+|.|++|.|....
T Consensus        98 --~d-----vsl~e-L~~~ydavvLaYGa~~d  121 (468)
T KOG1800|consen   98 --RD-----VSLKE-LTDNYDAVVLAYGADGD  121 (468)
T ss_pred             --cc-----ccHHH-HhhcccEEEEEecCCCC
Confidence              01     11111 12358999999996544

>PRK08275 putative oxidoreductase; Provisional

Probab=94.64  E-value=0.037  Score=56.84  Aligned_cols=45  Identities=22%  Similarity=0.277  Sum_probs=34.3

Q ss_pred             CcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      |+|.||+.++|++|++||+|||+....         .....|...|+.|+.++.
T Consensus       357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~---------~~~~~~~~~G~~a~~~~~  401 (554)
T PRK08275        357 SGVWVNEKAETTVPGLYAAGDMASVPH---------NYMLGAFTYGWFAGENAA  401 (554)
T ss_pred             CcEEECCCCccCCCCEEECcccCCchh---------HHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999975321         234456677777777664

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.62  E-value=0.041  Score=51.56  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=33.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      ++|.|||+|..|..+|..|+..|.+|+++++.+..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~   42 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELAT   42 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            5899999999999999999999999999998876544

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=94.56  E-value=0.064  Score=52.80  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=34.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR   79 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~~   79 (358)
                      ...+|||||+|.+|+.+|..|.+.|. +|+|+|-.+++..+
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR   60 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR   60 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence            45689999999999999999997765 78999998888655

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.48  E-value=0.038  Score=60.01  Aligned_cols=47  Identities=23%  Similarity=0.245  Sum_probs=35.6

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .|+|.||..++|++|++||+|||+....         .....+...|+.|+.++..
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~---------nsl~~a~v~G~~Ag~~a~~  407 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACVPH---------NYMIGAFVFGDLAGAHAAG  407 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCcch---------hhhhhHHHhHHHHHHHHHH
Confidence            3789999999999999999999976432         2344566677777776643

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.47  E-value=0.054  Score=47.34  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=36.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc--------cCccCCHHHHHHHHHHHHhC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MARLFTPKIASYYEEYYKSK   96 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~--------l~~~~~~~~~~~~~~~l~~~   96 (358)
                      +|.|||.|++|+-+|..|++.|.+|+.++..+..        .+ +..+.+.+.+.+.++..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p-~~E~~l~~ll~~~~~~~   62 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELP-IYEPGLDELLKENVSAG   62 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSS-S-CTTHHHHHHHHHHTT
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccc-ccccchhhhhccccccc
Confidence            7999999999999999999999999999876432        22 23555666666555443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.46  E-value=0.14  Score=51.59  Aligned_cols=79  Identities=23%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|+|.|-+|+.+|..|.+.|.+|++.++...       + .    .+.+++.||+++.+....      +     
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~-------~-~----~~~l~~~gi~~~~~~~~~------~-----   70 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET-------A-R----HKLIEVTGVADISTAEAS------D-----   70 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH-------H-H----HHHHHhcCcEEEeCCCch------h-----
Confidence            568999999999999999999999999999875321       1 1    122445688876542100      0     


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                            ..-.+|.||.+.|..|..+.+.
T Consensus        71 ------~~~~~d~vV~Spgi~~~~p~~~   92 (473)
T PRK00141         71 ------QLDSFSLVVTSPGWRPDSPLLV   92 (473)
T ss_pred             ------HhcCCCEEEeCCCCCCCCHHHH
Confidence                  0114789999999998876553

>PRK04148 hypothetical protein; Provisional

Probab=94.46  E-value=0.056  Score=44.52  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             HHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           32 LVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        32 i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      |.+.+...+++++++||.| .|.++|..|++.|.+|+.++..+
T Consensus         8 l~~~~~~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148          8 IAENYEKGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             HHHhcccccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            4444544456889999999 99999999999999999998654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.27  E-value=0.14  Score=50.86  Aligned_cols=83  Identities=23%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++|+|+|-|-+|+.+|..|.++|.+|++.+..+.. ..   +.     ...+...+|++..+....            
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~---~~-----~~~~~~~~i~~~~g~~~~------------   64 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG---LA-----AQPLLLEGIEVELGSHDD------------   64 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc---hh-----hhhhhccCceeecCccch------------
Confidence            4789999999999999999999999999999876544 21   11     112344567776553221            


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhhc
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG  148 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  148 (358)
                           -..-.+|.||.++|..|...++..
T Consensus        65 -----~~~~~~d~vV~SPGi~~~~p~v~~   88 (448)
T COG0771          65 -----EDLAEFDLVVKSPGIPPTHPLVEA   88 (448)
T ss_pred             -----hccccCCEEEECCCCCCCCHHHHH
Confidence                 113458999999999999886553

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.25  E-value=0.059  Score=50.31  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccC
Q 018320           43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMA   78 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~   78 (358)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++...+
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~   38 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP   38 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence            4899999999999999999997 69999999987655

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02730 carot_isom carotene isomerase

Probab=94.14  E-value=0.19  Score=50.69  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      ..+.+.+.+.+++.|+++++++.|++|.. +++++..+++.+|+++.+|.||++.|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            45677788889999999999999999986 4567778888899999999999998854

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=94.13  E-value=0.32  Score=49.97  Aligned_cols=51  Identities=18%  Similarity=0.271  Sum_probs=39.0

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      +....++.|..++.++.|+++.. .+++...|++.-| .+++..++=|+|+-.
T Consensus       193 la~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  193 LARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHH
Confidence            34455678999999999999976 3444447887776 589999999999643

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.01  E-value=0.18  Score=50.94  Aligned_cols=78  Identities=21%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|+|.|.+|+.++..|.+.|.+|++.++.+        ..    . +.+++.|+.+..+...       .     
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~--------~~----~-~~l~~~g~~~~~~~~~-------~-----   65 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP--------DA----L-RPHAERGVATVSTSDA-------V-----   65 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH--------HH----H-HHHHhCCCEEEcCcch-------H-----
Confidence            47899999999999999999999999999977431        11    1 2255568877643110       0     


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                           ...-.+|.||.++|..|+.+.+.
T Consensus        66 -----~~l~~~D~VV~SpGi~~~~p~~~   88 (488)
T PRK03369         66 -----QQIADYALVVTSPGFRPTAPVLA   88 (488)
T ss_pred             -----hHhhcCCEEEECCCCCCCCHHHH
Confidence                 00113699999999998877554

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=93.88  E-value=0.077  Score=51.62  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcE--EEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINV--TMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~V--tlv~~~~~~   76 (358)
                      .+.+++|+|||.+|+.+|..|++++.++  |++|.++++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            5789999999999999999999998765  558887765

>TIGR02731 phytoene_desat phytoene desaturase

Probab=93.88  E-value=0.24  Score=49.33  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-----EEecCeEEEeeCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGI  139 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~vi~a~G~  139 (358)
                      ..+.+.+.+.+++.|+++++++.|++|+.++++.+..+++.+|+     ++.+|.||+++..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            45667778888889999999999999986566767677776665     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.87  E-value=0.074  Score=45.06  Aligned_cols=32  Identities=34%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|+|+|+|..|.-+|..|++.|.+|+|..|.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999997743

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.87  E-value=0.097  Score=47.06  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++|+|||||.+|..=+..|.+.|.+||+|.+.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999753

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.85  E-value=0.22  Score=50.25  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++.+++|+|+|.+|+.++..+..+|.+|+++++.+
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46799999999999999999999999999887643

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.72  E-value=0.42  Score=44.81  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .+.+|+|+|||.+|.+.|......|.+||+++....
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~  202 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID  202 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence            456899999999999999999999999999998743

>PRK08071 L-aspartate oxidase; Provisional

Probab=93.72  E-value=0.094  Score=53.28  Aligned_cols=54  Identities=26%  Similarity=0.335  Sum_probs=38.9

Q ss_pred             CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320          155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  210 (358)
                      |+|.||.+.+|++|++||+|+|+...  .+|..+.. .....+...|+.|++++...
T Consensus       333 GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  387 (510)
T PRK08071        333 GGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK  387 (510)
T ss_pred             CCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence            67999999999999999999997521  12222211 23557788899999998643

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.69  E-value=0.085  Score=50.24  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=33.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      -++|.|||+|.+|..+|..++..|.+|+++++.+...
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~   43 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE   43 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            3789999999999999999999999999999876543

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.67  E-value=0.15  Score=43.76  Aligned_cols=49  Identities=24%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             CHHHHHHHHHHH-hcCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320           25 DLADANRLVNVM-KSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        25 ~~~da~~i~~~l-~~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +..-+.++.+.+ .+..+++++|||+|- +|.-+|..|.++|.+|+++.|.
T Consensus        27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            333444444433 345789999999997 5999999999999999999874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=93.66  E-value=0.085  Score=53.61  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -.|||||+| +|+-+|..+++.|.+|+|+++.+.
T Consensus         8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~   40 (513)
T PRK12837          8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK   40 (513)
T ss_pred             cCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence            479999999 999999999999999999998653

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.65  E-value=0.092  Score=54.24  Aligned_cols=55  Identities=20%  Similarity=0.253  Sum_probs=39.1

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  210 (358)
                      .|+|.||.+++|++|++||+|+|+...  ++|..+.- .....|.-.|++|++++...
T Consensus       358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~  413 (582)
T PRK09231        358 MGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER  413 (582)
T ss_pred             CCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence            467999999999999999999997521  12322221 23456778899998887653

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=93.64  E-value=0.09  Score=53.12  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEee
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFP   72 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~   72 (358)
                      ...|+|||||.+|+.+|..|++.  +.+|+|+||
T Consensus         6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            34799999999999999999999  899999999

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.57  E-value=0.1  Score=48.73  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5899999999999999999999999999987654

>TIGR02734 crtI_fam phytoene desaturase

Probab=93.56  E-value=0.27  Score=49.71  Aligned_cols=57  Identities=21%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      ..+.+.+.+.+++.|+++++++.|++|.. +++++..|++.+|+++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            46778888888999999999999999986 4556667888899899999999988753

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=93.46  E-value=0.098  Score=53.95  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .-+|+|||+|..|+.+|..+++.|.+|+|+|+.+.
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~   43 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV   43 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            34799999999999999999999999999998764

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.38  E-value=1.6  Score=43.34  Aligned_cols=34  Identities=12%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~   74 (358)
                      ..+|+|+|+|..-++....|.++|.  +||++.|..
T Consensus       196 ~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         196 DDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             CCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            4579999999999999999999887  699998864

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=93.37  E-value=0.18  Score=44.65  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=59.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  121 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~  121 (358)
                      +++.|+|.|.+|--+|..|++.|++|++-.++.        ++-.+.+.+.+   +..      ++..+           
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~~l---~~~------i~~~~-----------   53 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAAAL---GPL------ITGGS-----------   53 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHHhh---ccc------cccCC-----------
Confidence            478999999999999999999999999986542        22222222322   222      11110           


Q ss_pred             cCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEec
Q 018320          122 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG  161 (358)
Q Consensus       122 ~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~  161 (358)
                      . ..-.-.+|.|++++.+....+.+.+.....++.|.+|.
T Consensus        54 ~-~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~   92 (211)
T COG2085          54 N-EDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDA   92 (211)
T ss_pred             h-HHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEec
Confidence            0 01123489999999988777766654433457898884

>PRK09077 L-aspartate oxidase; Provisional

Probab=93.37  E-value=0.11  Score=53.15  Aligned_cols=54  Identities=22%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320          155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  210 (358)
                      |+|.||.+.+|++|++||+|+|+...  .+|..+.- .....|...|++|++++...
T Consensus       354 GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~  408 (536)
T PRK09077        354 GGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR  408 (536)
T ss_pred             CCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999997421  12222211 24557888899999998654

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.34  E-value=0.11  Score=53.21  Aligned_cols=53  Identities=19%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320          155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  210 (358)
                      |+|.||++.||++|++||+|+|+...   +|..+.. .....|...|++|+++++..
T Consensus       349 GGi~vd~~~~t~IpGLyAaGE~~gg~---hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~  402 (543)
T PRK06263        349 GGIRINEDCETNIPGLFACGEVAGGV---HGANRLGGNALADTQVFGAIAGKSAAKN  402 (543)
T ss_pred             CCEEECCCCcccCCCeEeccccccCC---CCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            56899999999999999999997532   2221111 23456788899999888653

>PRK07804 L-aspartate oxidase; Provisional

Probab=93.30  E-value=0.11  Score=53.17  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-------CC-cEEecCeEEEeeCC
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-------DG-NRLPTDMVVVGIGI  139 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-------~g-~~i~~D~vi~a~G~  139 (358)
                      ...+...+.+.+++.||+++.++.++++..++++++..+...       ++ ..+.++.||+|+|.
T Consensus       143 G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG  208 (541)
T PRK07804        143 GAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG  208 (541)
T ss_pred             HHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence            345667777778788899999999888876444555555432       22 35778888888874

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.27  E-value=0.098  Score=43.01  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=29.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      .++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4799999999999999999999998 68998774

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=93.24  E-value=0.62  Score=45.36  Aligned_cols=47  Identities=21%  Similarity=0.372  Sum_probs=36.2

Q ss_pred             hCCCEEEcCCeeeEEEE------cCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           95 SKGVKFVKGTVLSSFDV------DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        95 ~~gV~v~~~~~v~~i~~------~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ..+|+++..+++..+..      ++++....+.++||..+.+|++|=|-|+..
T Consensus       165 ~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns  217 (481)
T KOG3855|consen  165 SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNS  217 (481)
T ss_pred             cCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccc
Confidence            35788888877665533      456777789999999999999988888654

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=93.12  E-value=0.11  Score=51.76  Aligned_cols=38  Identities=16%  Similarity=0.070  Sum_probs=34.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      -.|+|||+|..++-+|..|++.|++|.++++.+.+...
T Consensus         5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~   42 (443)
T PTZ00363          5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE   42 (443)
T ss_pred             ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence            46999999999999999999999999999998877554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.06  E-value=0.13  Score=48.18  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            5799999999999999999999999999987654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.03  E-value=0.22  Score=44.05  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      +.++|+|||+|-.|.++|..|++.|. ++++++..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999999 69999876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=92.97  E-value=0.14  Score=52.87  Aligned_cols=55  Identities=24%  Similarity=0.271  Sum_probs=38.9

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  210 (358)
                      .|+|.+|...+|++|++||+|+|+...  ++|..+.- .....|...|++|+.++...
T Consensus       357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~  412 (580)
T TIGR01176       357 MGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER  412 (580)
T ss_pred             CCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999997421  12322211 24556788899998887643

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.91  E-value=0.31  Score=48.92  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=53.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+|+++|+|.|-+|..+|..|.+.|.+|++.+..+..  .  .++.     ..|++ ++.+..+..         .    
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~--~--~~~~-----~~l~~-~~~~~~~~~---------~----   63 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAV--E--AREV-----GALAD-AALLVETEA---------S----   63 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcc--c--chHH-----HHHhh-cCEEEeCCC---------C----
Confidence            4689999999999999999999999999998754321  1  1111     12444 333332210         0    


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                          ....-.+|.||.+.|..|+.+.+.
T Consensus        64 ----~~~~~~~d~vV~SpgI~~~~p~~~   87 (468)
T PRK04690         64 ----AQRLAAFDVVVKSPGISPYRPEAL   87 (468)
T ss_pred             ----hHHccCCCEEEECCCCCCCCHHHH
Confidence                001124799999999999877554

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=92.82  E-value=0.11  Score=49.43  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +..+|+|||+|.+|+.+|..|+++ .+||++|...++..
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG   44 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG   44 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence            457899999999999999999987 79999998877643

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=92.77  E-value=0.51  Score=47.05  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      ..++.+.+.+.++..|.++++++.|++|+.++++++..|++.+|+++.++.||......|.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            3567888888888999999999999999875567777899999999999999998777765

>TIGR00551 nadB L-aspartate oxidase

Probab=92.71  E-value=0.17  Score=51.11  Aligned_cols=56  Identities=25%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             ccCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320          153 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       153 ~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  210 (358)
                      .-|+|.||...||++|++||+|+|+...  ++|..+.. .....|.-.|+.|++++...
T Consensus       332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~  388 (488)
T TIGR00551       332 TCGGISVDDHGRTTVPGLYAIGEVACTG--LHGANRLASNSLLECLVFGWSAAEDISRR  388 (488)
T ss_pred             ecCCEEECCCCcccCCCEEECccccccc--cCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence            3588999999999999999999997421  12222211 23457888999999998653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN02976 amine oxidase

Probab=92.67  E-value=0.17  Score=56.64  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      ..++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr  731 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR  731 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence            3578999999999999999999999999999998776544

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=1.4  Score=41.91  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=28.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVF   71 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~   71 (358)
                      .-.++|||||-.|+.||...+..|.+|.+++
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lD   49 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACLD   49 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEEe
Confidence            4579999999999999999999999998875

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.66  E-value=0.74  Score=43.94  Aligned_cols=98  Identities=23%  Similarity=0.341  Sum_probs=65.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cCCH--
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP--   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~~~--   83 (358)
                      -..+|||||--|+..|...+..|.+|-++|..-.+...                                    .|+-  
T Consensus        21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~  100 (478)
T KOG0405|consen   21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKV  100 (478)
T ss_pred             cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHH
Confidence            46899999999999999999999999999875221000                                    0110  


Q ss_pred             -------H---HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE--EecCeEEEeeCCCCChh
Q 018320           84 -------K---IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 -------~---~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~  144 (358)
                             .   +...+++.|.+.+|+++.+..  ++.  +++.+ .|+..||++  +.+..+++|+|.+|..+
T Consensus       101 ik~krdayi~RLngIY~~~L~k~~V~~i~G~a--~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~P  168 (478)
T KOG0405|consen  101 IKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA--RFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIP  168 (478)
T ss_pred             HHhhhhHHHHHHHHHHHhhccccceeEEeeeE--EEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCC
Confidence                   0   122234556667788887642  332  34443 566677753  67899999999887665

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=92.65  E-value=0.16  Score=50.27  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++|||+|..|+.+|..|++.|.+|++++++
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            47999999999999999999999999999975

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=92.58  E-value=0.16  Score=52.16  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      -.|+|||+|..|+-+|..+++.|.+|+|||+.+.+
T Consensus         8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            47999999999999999999999999999997643

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.56  E-value=0.17  Score=45.71  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            478999999999999999999999999998754

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.53  E-value=0.12  Score=48.74  Aligned_cols=34  Identities=24%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..|-|||+|..|.|.|..++++|.+|.+.|.++.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            5789999999999999999999999999998753

>PLN02256 arogenate dehydrogenase

Probab=92.45  E-value=0.35  Score=45.74  Aligned_cols=64  Identities=16%  Similarity=0.099  Sum_probs=46.9

Q ss_pred             CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320            5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus         5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|+.+.+...|...-|-     --.++++.+...+..++.|||.|.+|-.+|..|.+.|.+|+.+.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~   68 (304)
T PLN02256          5 RRPRSLRVRAIDAAQPFD-----YESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS   68 (304)
T ss_pred             CCCCCcccccccccCCCC-----hHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence            456666666555444441     1235666666556789999999999999999999999999988764

>PRK08401 L-aspartate oxidase; Provisional

Probab=92.44  E-value=0.19  Score=50.49  Aligned_cols=54  Identities=22%  Similarity=0.292  Sum_probs=38.7

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      -|+|.||...||++|++||+|+|+...  ++|..+.. .....+...|+.|++++..
T Consensus       310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G--~hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        310 IGGISVDTFYRTGIKNLYAIGEAASNG--FHGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             CCCEEECCCCcccCCCEEECccccccC--CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            467999999999999999999997421  12322221 2345677889999998864

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=92.40  E-value=0.32  Score=48.53  Aligned_cols=74  Identities=22%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             cEEEEcCcHHHHH-HHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320           43 NAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  121 (358)
Q Consensus        43 ~vvVIGgG~~gle-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~  121 (358)
                      ++.+||-|-+|+. +|..|.++|.+|++.+..+.       +     ..+.|++.||++..+.....             
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~-------------   55 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAEN-------------   55 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHHH-------------
Confidence            4789999999998 99999999999999876432       1     12346777888875421100             


Q ss_pred             cCCCcEEecCeEEEeeCCCCChhhh
Q 018320          122 LRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       122 ~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                      +     -.+|.||++.|..|+.+.+
T Consensus        56 ~-----~~~d~vV~spgi~~~~p~~   75 (448)
T TIGR01082        56 L-----DDADVVVVSAAIKDDNPEI   75 (448)
T ss_pred             C-----CCCCEEEECCCCCCCCHHH
Confidence            1     1278999999998876644

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.38  E-value=0.16  Score=47.98  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            4799999999999999999999999999998754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.35  E-value=0.21  Score=39.51  Aligned_cols=73  Identities=26%  Similarity=0.284  Sum_probs=47.4

Q ss_pred             EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC
Q 018320           44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  123 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~  123 (358)
                      ++|+|.|..|.+++..|.+.+.+|+++++.+.         .    .+.+++.|+.++.+...      +.     -.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~----~~~~~~~~~~~i~gd~~------~~-----~~l~   56 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE---------R----VEELREEGVEVIYGDAT------DP-----EVLE   56 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH---------H----HHHHHHTTSEEEES-TT------SH-----HHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH---------H----HHHHHhcccccccccch------hh-----hHHh
Confidence            68999999999999999997779999987532         2    23456677776654211      00     0011


Q ss_pred             CCcEEecCeEEEeeCCC
Q 018320          124 DGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       124 ~g~~i~~D~vi~a~G~~  140 (358)
                      .-..-.++.++++++..
T Consensus        57 ~a~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen   57 RAGIEKADAVVILTDDD   73 (116)
T ss_dssp             HTTGGCESEEEEESSSH
T ss_pred             hcCccccCEEEEccCCH
Confidence            11224688999998843

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09620 hypothetical protein; Provisional

Probab=92.18  E-value=0.57  Score=42.37  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             CCCcEEEEcC-----------------cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-----------------G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++|+|-+|                 |++|..+|..|.++|.+|+++...
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~   52 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY   52 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4678888765                 899999999999999999999753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.10  E-value=0.22  Score=49.00  Aligned_cols=35  Identities=34%  Similarity=0.391  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            68999999999999999999999999999987653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.05  E-value=0.26  Score=42.19  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++.+++|+|+|.+|..++..|..+|.+|++++..
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            5789999999999999999999999999998753

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=92.04  E-value=0.22  Score=49.40  Aligned_cols=56  Identities=29%  Similarity=0.313  Sum_probs=41.8

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCCC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      -|+|.||.+.||+.|++||+|.|+...  +.|-.+.. ...-.+.-.|..+|++|.+..
T Consensus       341 mGGI~vD~~GrTsi~gLYAiGEvA~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~  397 (518)
T COG0029         341 MGGIAVDANGRTSIPGLYAIGEVACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL  397 (518)
T ss_pred             cccEEECCCCcccCcccEEeeeecccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence            488999999999999999999998753  23443322 123356778888999998764

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=91.88  E-value=0.37  Score=46.78  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ..+...+.+.+++ |++++.++.|++++.+ ++. ..+++.+|..+.+|.||+|+|.-.
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence            4556667777778 9999999999999863 333 457778887899999999999543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=91.79  E-value=0.49  Score=41.38  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=31.3

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++++|+|+ |.+|..++..|.+.|.+|+++.|.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36789999997 999999999999999999999764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=91.73  E-value=0.19  Score=52.19  Aligned_cols=40  Identities=10%  Similarity=0.106  Sum_probs=27.5

Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      ...+|++|++||+|||+.....        .++..+..+|.+++.++.
T Consensus       400 ~~~~T~i~gLyA~Ge~~~~~~h--------~l~~nsl~eg~~ag~~a~  439 (614)
T TIGR02061       400 YNRMTTVEGLFTCGDGVGASPH--------KFSSGSFTEGRIAAKAAV  439 (614)
T ss_pred             cCCccccCCEEeceecccCcch--------hhHHhHHHHHHHHHHHHH
Confidence            7889999999999999753211        234555566666666554

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=91.72  E-value=0.52  Score=46.71  Aligned_cols=78  Identities=22%  Similarity=0.243  Sum_probs=52.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHH-hCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVN  121 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~g~v~~v~  121 (358)
                      ++.|||-|-+|+.+|..|.+.|.+|+..+..+....    +.    ....++ ..||++..+.....           + 
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~----~~----~~~~~~~~~gi~~~~g~~~~~-----------~-   60 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL----EP----SMGQLRLNEGSVLHTGLHLED-----------L-   60 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc----hh----HHHHHhhccCcEEEecCchHH-----------h-
Confidence            478999999999999999999999999886543211    11    011222 35888875532100           1 


Q ss_pred             cCCCcEEecCeEEEeeCCCCChhhh
Q 018320          122 LRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       122 ~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                            -.+|.||+++|..|+.+.+
T Consensus        61 ------~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087        61 ------NNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             ------ccCCEEEECCCCCCCCHHH
Confidence                  1378999999998876644

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.71  E-value=0.31  Score=47.18  Aligned_cols=50  Identities=24%  Similarity=0.390  Sum_probs=37.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-------cCccCCHHHHHHHHHH
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MARLFTPKIASYYEEY   92 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-------l~~~~~~~~~~~~~~~   92 (358)
                      ++.|+|.|+.|+-.|..|++.|++|+.++..+.-       ..+.++|.+.+.+++.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~   58 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKEN   58 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhc
Confidence            6899999999999999999999999999865321       1224566665555443

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.66  E-value=0.22  Score=46.59  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999987654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.66  E-value=0.25  Score=46.25  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++++|+|.|.+|..+|..|...|.+|+++.|.+
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57999999999999999999999999999998754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=91.54  E-value=0.24  Score=50.91  Aligned_cols=53  Identities=21%  Similarity=0.193  Sum_probs=37.5

Q ss_pred             CcEEEecccc----CCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          155 GGIKVTGRLQ----SSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       155 g~i~vd~~~~----t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      |+|.||...|    |++|++||+|+|+...  .+|..+.. .....|...|++|+.++..
T Consensus       343 GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~  400 (566)
T TIGR01812       343 GGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAE  400 (566)
T ss_pred             CCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHH
Confidence            4688999999    9999999999997521  12222211 2355678888988888764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=91.52  E-value=0.32  Score=43.40  Aligned_cols=34  Identities=35%  Similarity=0.584  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++|+|||||-.|..=|..|.+.|.+|+++.+.
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~   44 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE   44 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence            6899999999999999999999999999999654

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=91.49  E-value=0.22  Score=41.28  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      ++|+|+|.++..++..+...|.+|++++..+..++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~   35 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFP   35 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-T
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccC
Confidence            58999999999999999999999999998766443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.46  E-value=0.54  Score=46.71  Aligned_cols=57  Identities=16%  Similarity=0.281  Sum_probs=46.0

Q ss_pred             CCeEEecCHHHHHHHHHHHhcC--CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           18 ENVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~~--~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +.++.+-+.++..++.+.+...  ..++++|+|+|..|..++..|.+.|.+|+++++.+
T Consensus       206 D~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~  264 (453)
T PRK09496        206 DEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP  264 (453)
T ss_pred             CEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3566667777777777766532  35789999999999999999999999999998643

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.45  E-value=0.23  Score=46.55  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=31.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6899999999999999999999999999987654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=91.44  E-value=0.26  Score=50.34  Aligned_cols=34  Identities=29%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      +|+|||+|+.|+-+|..|++.|.+|.+||++...
T Consensus         2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~   35 (544)
T TIGR02462         2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD   35 (544)
T ss_pred             cEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            5899999999999999999999999999997543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.43  E-value=0.26  Score=41.99  Aligned_cols=35  Identities=31%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+++|+|=|.+|--+|..|+..|.+|++.+..|
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            68999999999999999999999999999998754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07512 L-aspartate oxidase; Provisional

Probab=91.42  E-value=0.25  Score=50.18  Aligned_cols=55  Identities=31%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~  210 (358)
                      -|+|.||...+|++|++||+|+|+...  .+|..+.. .....+...|++|++++...
T Consensus       341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~~  396 (513)
T PRK07512        341 MGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAGT  396 (513)
T ss_pred             cCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            477999999999999999999997421  12222211 13446777889999888654

>PRK02106 choline dehydrogenase; Validated

Probab=91.31  E-value=0.24  Score=50.89  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~~~   74 (358)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus         6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            379999999999999999999 799999999985

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=91.17  E-value=0.41  Score=41.41  Aligned_cols=36  Identities=25%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++++.|||-|.||-++|..|...|.+|..+.+...
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            689999999999999999999999999999988653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=91.14  E-value=0.29  Score=50.84  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=36.4

Q ss_pred             CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      |+|.+|...+|++|++||+|+|+...   +|..+.- .....+...|+.|+.++..
T Consensus       371 gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~  423 (603)
T TIGR01811       371 GGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP  423 (603)
T ss_pred             CCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999997532   2332211 2344677778888777653

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06175 L-aspartate oxidase; Provisional

Probab=91.12  E-value=0.32  Score=48.35  Aligned_cols=55  Identities=25%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             ccCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          153 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       153 ~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      .-|+|.||...||++|++||+|.|+...  ++|..+.. .....+.-.|++|++++..
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g--~hG~nrl~gnsl~~~lvfGr~Ag~~a~~  385 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTG--VHGANRLASNSLLEGLVFSKRGAEKINS  385 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccC--CCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            3588999999999999999999997421  12222211 2345778889999998854

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.12  E-value=0.28  Score=50.76  Aligned_cols=53  Identities=21%  Similarity=0.135  Sum_probs=38.4

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      -|+|.||...+|++|++||+|+|+...   +|..+.. .....|...|++|+.++..
T Consensus       355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~  408 (589)
T PRK08641        355 MGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVE  408 (589)
T ss_pred             CCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999997432   2332221 2345677788888887753

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=91.10  E-value=0.43  Score=42.22  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ..++|+|||.|-+|.++|..|++.|. +++++++.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46899999999999999999999998 79998875

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.09  E-value=0.62  Score=43.55  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=38.7

Q ss_pred             CHHHHHHHHHHHh-cCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320           25 DLADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        25 ~~~da~~i~~~l~-~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |..-..++.+... ...+++++|||.|. .|.-+|..|.++|+.||++++.
T Consensus       141 Tp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~  191 (286)
T PRK14175        141 TPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR  191 (286)
T ss_pred             cHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            4555555555442 34789999999977 9999999999999999999864

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.02  E-value=0.49  Score=50.95  Aligned_cols=76  Identities=24%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             CCcEEEEcCcHHHHHH-HHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           41 GGNAVVIGGGYIGMEC-AASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~-A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      -+++.|+|-|-+|+.+ |..|.++|.+|++.+..+.       +.    . +.|++.||++..+.....           
T Consensus         4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~----~-~~L~~~gi~~~~g~~~~~-----------   60 (809)
T PRK14573          4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT----V-EKLKAKGARFFLGHQEEH-----------   60 (809)
T ss_pred             cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHHH-----------
Confidence            3579999999999998 9999999999999875431       11    1 236778998876532100           


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                        +     -.+|.||++.|..|+...+
T Consensus        61 --~-----~~~d~vV~SpgI~~~~p~~   80 (809)
T PRK14573         61 --V-----PEDAVVVYSSSISKDNVEY   80 (809)
T ss_pred             --c-----CCCCEEEECCCcCCCCHHH
Confidence              1     1368899999988876644

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.99  E-value=0.26  Score=52.19  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      -++|.|||+|..|..+|..++..|.+|++++..+..+.
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~  350 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLD  350 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            35899999999999999999999999999998765443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.98  E-value=0.41  Score=42.36  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++++|+|.|.+|..+|..|.+.|.+|++.++.
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36799999999999999999999999999987643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.92  E-value=0.4  Score=46.01  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      +.++|+|||.|-+|.++|..|++.|. +++|+++..
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46899999999999999999999998 799998763

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=90.83  E-value=0.31  Score=45.60  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=29.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5899999999999999999999999999874

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.82  E-value=0.27  Score=52.04  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=33.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      ++|.|||+|..|..+|..++..|++|++++..+..+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~  350 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD  350 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            5899999999999999999999999999998765443

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.80  E-value=0.36  Score=49.70  Aligned_cols=54  Identities=15%  Similarity=0.202  Sum_probs=37.5

Q ss_pred             cCcEEEeccccCC-CCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          154 KGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       154 ~g~i~vd~~~~t~-~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      -|+|.||.+.+|+ +|++||+|+|+...  .+|..+.- .....+.-.|++|+.++..
T Consensus       346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g--~hGanrlggnsl~~~~v~G~~Ag~~aa~  401 (566)
T PRK06452        346 MGGIDVDIDGRNPDIVGLFSAGEAACVS--VHGANRLGSNSLLDTLVFGQVTGRTVVQ  401 (566)
T ss_pred             cCCeEECCCCCcCCcCCeEecccccccC--CCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            3678999999995 99999999997521  12222211 1345678888888888754

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.80  E-value=0.3  Score=45.43  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~   38 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA   38 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence            57999999999999999999999999999876543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=90.71  E-value=0.86  Score=45.92  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-----cEEecCeEEEeeCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-----NRLPTDMVVVGIGI  139 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-----~~i~~D~vi~a~G~  139 (358)
                      ..+.+.+.+.+++.|++|++++.|++|..+ +++...+.+.++     +++.+|.||+++..
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            457788888899999999999999999873 444444555454     57899999999875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.67  E-value=0.38  Score=47.27  Aligned_cols=35  Identities=23%  Similarity=0.196  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++|+|+|.|.+|.-+|..++..|.+|+++++.+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            68999999999999999999999999999988654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=90.62  E-value=0.57  Score=39.05  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~   73 (358)
                      ++++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            4689999999999999999999996 778888764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02815 L-aspartate oxidase

Probab=90.56  E-value=0.35  Score=50.10  Aligned_cols=54  Identities=26%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      -|+|.+|...+|++|++||+|+|+...  ++|..+.. .....+.-.|+.|+.++..
T Consensus       377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~  431 (594)
T PLN02815        377 CGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID  431 (594)
T ss_pred             CCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999999997421  12322221 2355777888888888753

>PRK06849 hypothetical protein; Provisional

Probab=90.53  E-value=0.83  Score=44.61  Aligned_cols=63  Identities=8%  Similarity=0.010  Sum_probs=47.1

Q ss_pred             CCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeCCccc---------------CccCCHHHHHHHHHHHHhCCCEEEc
Q 018320           40 SGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCM---------------ARLFTPKIASYYEEYYKSKGVKFVK  102 (358)
Q Consensus        40 ~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~~~~l---------------~~~~~~~~~~~~~~~l~~~gV~v~~  102 (358)
                      .+++|+|.|++. .|+++|..|.+.|.+|++++..+..+               +..-++...+.+.+..++.+++++.
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vI   81 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLI   81 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            468999999986 79999999999999999998764321               2211234567777777888887664

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=90.51  E-value=0.32  Score=49.25  Aligned_cols=39  Identities=23%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +-++|.|||+|..|..+|..|++.|.+|+++++.+..+.
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~   42 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALA   42 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            357899999999999999999999999999998765443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.46  E-value=0.37  Score=46.84  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++++|+|+|.+|..++..|..+|.+|+++++.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            56789999999999999999999999999998753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.44  E-value=0.87  Score=45.36  Aligned_cols=78  Identities=15%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHh--CCCEEEcCC-eeeEEEEcCCCcE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGT-VLSSFDVDSNGKV  117 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gV~v~~~~-~v~~i~~~~~g~v  117 (358)
                      ...++|+|-|-+|+.+|..|.++|.+|+..+..+.      .+ .    .+.|++  .|++++.+. ...          
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~~-~----~~~l~~~~~g~~~~~~~~~~~----------   64 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------PP-G----LDTLAREFPDVELRCGGFDCE----------   64 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------ch-h----HHHHHhhcCCcEEEeCCCChH----------
Confidence            56899999999999999999999999999886542      11 1    122444  377776431 100          


Q ss_pred             EEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          118 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       118 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                              ..-.+|.||+++|..|+.+.+.
T Consensus        65 --------~~~~~d~vV~sp~i~~~~p~~~   86 (448)
T PRK03803         65 --------LLVQASEIIISPGLALDTPALR   86 (448)
T ss_pred             --------HhcCCCEEEECCCCCCCCHHHH
Confidence                    0113789999999988766543

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=90.38  E-value=0.25  Score=48.57  Aligned_cols=44  Identities=30%  Similarity=0.332  Sum_probs=36.4

Q ss_pred             cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .|.+|+.+.|+.+++|++||+++...          .+..|...|-.+|+.|+.
T Consensus       438 ri~~d~~~~t~i~gLy~aGdGAG~ar----------gI~~Aaa~Gi~~A~~i~~  481 (486)
T COG2509         438 RIKVDEDLSTSIKGLYPAGDGAGLAR----------GIVSAAADGIKAAEGIAR  481 (486)
T ss_pred             eEeecccceeeecceEEccccccccc----------hhHHHhhhhHHHHHHHHH
Confidence            57889999999999999999998753          355677788888888764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.34  E-value=0.31  Score=51.81  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      ++|.|||+|..|..+|..++..|++|+++++.+..+.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~  372 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLD  372 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHH
Confidence            6899999999999999999999999999998766544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.21  E-value=0.53  Score=45.21  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ...+|+|||+|-+|.++|..|++.|. ++++++..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999 89999875

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=90.20  E-value=0.36  Score=48.98  Aligned_cols=38  Identities=24%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      -++|.|||+|..|..+|..|++.|.+|+++++.+..+.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~   44 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAA   44 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            47899999999999999999999999999998766443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=90.15  E-value=0.48  Score=40.56  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             EEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           44 AVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        44 vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |+|+|+ |.+|-.++..|.+.|.+|+.+.|.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence            689996 99999999999999999999998754

...

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.14  E-value=0.36  Score=49.80  Aligned_cols=53  Identities=21%  Similarity=0.183  Sum_probs=37.1

Q ss_pred             CcEEEeccccCC------CCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320          155 GGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       155 g~i~vd~~~~t~------~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g  209 (358)
                      |+|.||.+.+|+      +|++||+|+|+...  .+|..+.- .....|...|++|+.++..
T Consensus       353 GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g--~hGanrlggnsl~~~~v~Gr~Ag~~aa~  412 (577)
T PRK06069        353 GGIHTDVYGRVLTADGEWVRGLWAAGEAAAVS--VHGANRLGSNSTAECLVWGRIAGEQAAE  412 (577)
T ss_pred             CCceECCCCcCcCCCCCEeCCeEecccccccc--ccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            568899999998      99999999997521  12222211 2345677888888888764

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.07  E-value=0.38  Score=45.12  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -++|.|||+|.+|..+|..|+..|.+|+++++.+.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            36899999999999999999999999999987654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.05  E-value=1.4  Score=39.91  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|+++|.|+ |.+|..+|..|.+.|.+|.++.|.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~   43 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD   43 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence            5789999995 899999999999999999988764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=90.03  E-value=0.45  Score=47.01  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++++|+|.|.+|..+|..|+..|.+|+++++.+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            68999999999999999999999999999988754

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=90.03  E-value=0.72  Score=40.67  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      +..+|+|+|.|.+|.|+|..|+..|. ++++++..
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46899999999999999999999998 48888765

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		1e-28
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		4e-28
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		2e-27
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		3e-23
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		1e-16
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		1e-16
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		4e-16
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		5e-16
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		5e-16
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		3e-15
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		4e-15
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-14
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		2e-14
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-14
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-14
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		3e-14
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		3e-14
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		7e-14
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-13
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		2e-13
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		2e-13
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		3e-13
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		8e-13
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		9e-13
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		2e-11
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-11
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-11
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		5e-09
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		6e-09
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		2e-07
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		3e-07
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		1e-06
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		1e-06
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		1e-06
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		2e-06
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		5e-06
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		5e-06
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		5e-06
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		5e-06
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		6e-06
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		6e-06
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		6e-06
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		6e-06
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		9e-06
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		9e-06
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		9e-06
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		1e-05
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		1e-05
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		1e-05
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		3e-05
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		3e-05
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		3e-05
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		4e-05
3kd9_A	449	Crystal Structure Of Pyridine Nucleotide Disulfide		1e-04
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		1e-04
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		2e-04
1tde_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		3e-04
1cl0_A	320	Crystal Structure Of Reduced Thioredoxin Reductase		3e-04
1tdf_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		3e-04
1trb_A	320	Convergent Evolution Of Similar Function In Two Str		3e-04
1f6m_A	320	Crystal Structure Of A Complex Between Thioredoxin		3e-04
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		5e-04
1hyu_A	521	Crystal Structure Of Intact Ahpf Length = 521		7e-04

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 150/301 (49%), Gaps = 7/301 (2%)
Query: 17  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
           A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  
Sbjct: 127 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 184
Query: 77  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 135
           + R+  P ++++YE  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ 
Sbjct: 185 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 244
Query: 136 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           GIG+ PN  L          GI +   +Q+S+  + AVGD A F  +L     R+E V +
Sbjct: 245 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 304
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 253
           A + A+  +AAI+   K  + +  P+F+S  + +  +  G + G   ++  G+ +   F 
Sbjct: 305 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 362
Query: 254 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST 313
            +++   R++         E  ++    T   PV  +L   E+  L   +A ++  L S 
Sbjct: 363 VFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSA 422
Query: 314 P 314
           P
Sbjct: 423 P 423

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 152/308 (49%), Gaps = 7/308 (2%)
Query: 17  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
           A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  
Sbjct: 126 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 183
Query: 77  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 135
           + R+  P ++++YE  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ 
Sbjct: 184 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 243
Query: 136 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           GIG+ PN  L          GI +   +Q+S+  + AVGD A F  +L     R+E V +
Sbjct: 244 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 303
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 253
           A + A+  +AAI+   K  + +  P+F+S  + +  +  G + G   ++  G+ +   F 
Sbjct: 304 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 361
Query: 254 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST 313
            +++   R++         E  ++    T   PV  +L   E+  L   +A ++  L S 
Sbjct: 362 VFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSA 421
Query: 314 PVDGKTVP 321
             +  + P
Sbjct: 422 KAELSSAP 429

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 19  NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78
           +V YLR L ++  L   M      + VVIG G+IG+E AA+     + V +V      MA
Sbjct: 122 DVLYLRTLDESEVLRQRMPDKK--HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA 179
Query: 79  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
           R+ TP+I+SY+ + +   G++   G   +    + + +V  V L DGN LP D+VVVG+G
Sbjct: 180 RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVG 238
Query: 139 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
           + PN  +          GI V  +L +S+  + A+GD A F     GET R+E V +A  
Sbjct: 239 VIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATD 298
Query: 199 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYW 256
            A+  VAA +  D    +D  P+F+S       Q  G   G  +VV  G+ +  +F A+ 
Sbjct: 299 QAR-CVAARLTGD-AKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFC 356
Query: 257 VNKGRLVG 264
              G+L+G
Sbjct: 357 YKAGKLIG 364

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 7/253 (2%)
Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           G+D   V  +R   DA+RL+  + +    NAVVIGGGYIG+E AA L    +NVT++   
Sbjct: 126 GADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEAL 184
Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              +AR+    ++ +Y+  +++ GV    G  +   + D   KV  V ++DG+ +P D+V
Sbjct: 185 PRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGT-KVTGVRMQDGSVIPADIV 243
Query: 134 VVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRLEH 192
           +VGIGI P              G+ V    ++S + VYA+GD AA       G   RLE 
Sbjct: 244 IVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLES 303
Query: 193 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE--VVHYGNFSGT 250
           V +A   A  A   I        +   P+F+S  + L  Q  G + G    V  G+ +  
Sbjct: 304 VQNANDMATAAAKDIC--GAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATR 361
Query: 251 TFGAYWVNKGRLV 263
           +F   ++  G++V
Sbjct: 362 SFSVVYLKGGKVV 374

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 20  VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79
           V  LR L DA R+   ++  S    +++GGG IG+E AA+     ++V++V  +   M+R
Sbjct: 126 VHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR 183
Query: 80  LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIG 138
                +A +   Y+ ++GV          F+    G V  V L  DG R+  DMVVVGIG
Sbjct: 184 AAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
Query: 139 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
           +  N +L          GI V    +++   VYA+GDV      L G   R+E   +A+ 
Sbjct: 237 VLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 199 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAY 255
                   +++P     +  LP+++S    L  Q  G   G E +  G  S     F   
Sbjct: 297 QGIAVARHLVDP-TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLI 355
Query: 256 WVNKGRLVGS 265
            + KGR+VG+
Sbjct: 356 ELQKGRIVGA 365

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 20  VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79
           V  LR L DA R+   ++  S    +++GGG IG+E AA+     ++V++V  +   M+R
Sbjct: 126 VHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR 183
Query: 80  LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIG 138
                +A +   Y+ ++GV          F+    G V  V L  DG R+  DMVVVGIG
Sbjct: 184 AAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
Query: 139 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
           +  N +L          GI V    +++   VYA+GDV      L G   R+E   +A+ 
Sbjct: 237 VLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 199 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAY 255
                   +++P     +  LP+++S    L  Q  G   G E +  G  S     F   
Sbjct: 297 QGIAVARHLVDP-TAPGYAELPWYFSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLI 355
Query: 256 WVNKGRLVGS 265
            + KGR+VG+
Sbjct: 356 ELQKGRIVGA 365

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 78
            R + D   L  + +     +  VIGGG++G E A +L      + I V  +FPE   M 
Sbjct: 182 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 239
Query: 79  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
           ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ TD +V  +G
Sbjct: 240 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 297
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 298 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 355
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 356 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 405
Query: 255 Y 255
           +
Sbjct: 406 F 406

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 78
            R + D   L  + +     +  VIGGG++G E A +L      + I V  +FPE   M 
Sbjct: 206 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 263
Query: 79  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
           ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ TD +V  +G
Sbjct: 264 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 321
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 322 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 379
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 380 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 429
Query: 255 Y 255
           +
Sbjct: 430 F 430

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 78
            R + D   L  + +     +  VIGGG++G E A +L      + I V  +FPE   M 
Sbjct: 201 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 258
Query: 79  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
           ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ TD +V  +G
Sbjct: 259 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 316
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 317 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 374
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 375 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 424
Query: 255 Y 255
           +
Sbjct: 425 F 425

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA 78
            R + D   L  + +     +  +IGGG++G E A +L          V  +FPE   M 
Sbjct: 164 FRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 221
Query: 79  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
           ++    ++++  E  + +GVK +   ++ S  V S+GK++ + L+DG ++ TD +V  +G
Sbjct: 222 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVG 279
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 280 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 337
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
           A  S + A   +    K       P+++  +F   W   G +VG E +   + S  T G 
Sbjct: 338 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 387
Query: 255 Y 255
           +
Sbjct: 388 F 388

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA 78
            R + D   L  + +     +  +IGGG++G E A +L          V  +FPE   M 
Sbjct: 182 FRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 239
Query: 79  RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
           ++    ++++  E  + +GVK +   ++ S  V S+GK++ + L+DG ++ TD +V  +G
Sbjct: 240 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVG 297
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
           + PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG  RR+EH D 
Sbjct: 298 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 355
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
           A  S + A   +    K       P+++  +F   W   G +VG V
Sbjct: 356 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYV 391

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 26/186 (13%)
Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL- 180
Query: 72  PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 119
                  ++ TP   ++A +  +  + +GV    GT LS  S+ V      D+ G+  A 
Sbjct: 181 ---ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 120 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 169
                   + L +G  L TD++++ IG+RP T L    G    E GGIKV   +Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPA 297
Query: 170 VYAVGD 175
           +YAVGD
Sbjct: 298 IYAVGD 303

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
             +    +ARK  + AV  + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL- 180
Query: 72  PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 119
                  ++ TP   + A +  +  + +GV    GT LS  S+ V      D+ G+  A 
Sbjct: 181 ---ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 120 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 169
                   + L +G  L TD+++  IG+RP T L    G    E GGIKV    Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPA 297
Query: 170 VYAVGD 175
           +YAVGD
Sbjct: 298 IYAVGD 303

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL- 180
Query: 72  PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 119
                  ++ TP   + A +  +  + +GV    GT LS  S+ V      D+ G+  A 
Sbjct: 181 ---ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 120 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 169
                   + L +G  L TD+++  IG+RP T L    G    E GGIKV    Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPA 297
Query: 170 VYAVGD 175
           +YAVGD
Sbjct: 298 IYAVGD 303

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 4/205 (1%)
Query: 9   EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
           E  + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69  MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
           ++      +      +      E  ++  +    G  +  ++ D  G+V  V + D N  
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
             D+VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD            
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
             +    +A K  + AV  + EP K
Sbjct: 294 VNIALATNAMKQGRFAVKNLEEPVK 318

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D+  V   ++  DA +L    ++       +IG GYIG E A +      NV ++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFE--EAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLID 179
Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                + + F  +      + Y++ GV  V G+ +++F+ + + +++   L DG  + +D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITKTL-DGKEIKSD 237
Query: 132 MVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQSSNSSVYAVGDVAA 178
           + ++ IG RPNT L +G++  L+ G I     + SSN  ++A GD AA
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 15  SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74
            +A+ +  LR++ D +R+   +      +A VIGGG+IG+E   +L    I VT+V   A
Sbjct: 161 EEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLV-EXA 219
Query: 75  HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 134
           + +      + A+Y  E+ K+  V+ V    + +   + NG V  V L+ G+ + TD ++
Sbjct: 220 NQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDAL--EENGAV--VRLKSGSVIQTDXLI 275
Query: 135 VGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGD 175
           + IG++P +SL +G  L L  +G IKV  + Q+S+  +YA+GD
Sbjct: 276 LAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 13  SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 72
            G D + V  L+ + DA R++  +++    +  +IGGG IG+E A + V     V M+  
Sbjct: 158 EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIER 217
Query: 73  EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 132
             H +  ++   +A Y  +      ++ +    + +F    N +V AV    G     D+
Sbjct: 218 NDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVETDKGT-YKADL 273
Query: 133 VVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 179
           V+V +G++PNT   EG    T  KG I+V   +Q++   VYA GD A  
Sbjct: 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATH 322

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 16  DAENVCY-LRDLADANRLVNVMKSCSGGNAVVI-GGGYIGMECAASLVINKINVTMVFPE 73
           DA++  Y + DL D  R     ++ +G   V++ G G IG E A  L      + +V P 
Sbjct: 121 DAQDALYPINDLEDYARF---RQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPC 177
Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              M  L  P  A   +   +  GV+F  G VL+S      G+ +  +L DG  +P D+V
Sbjct: 178 EQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK--KAGEGLEAHLSDGEVIPCDLV 235
Query: 134 VVGIGIRPNTSL-FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVA 177
           V  +G+RP T L F   L + + GI V   L++S++++YA+GD A
Sbjct: 236 VSAVGLRPRTELAFAAGLAVNR-GIVVDRSLRTSHANIYALGDCA 279

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 13  SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 72
            G D + V  L+ + DA R++  +++    +  +IGGG IG+E A + V     V  +  
Sbjct: 158 EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIER 217
Query: 73  EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 132
             H +  ++    A Y  +      ++ +    + +F    N +V AV    G     D+
Sbjct: 218 NDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVETDKGT-YKADL 273
Query: 133 VVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 179
           V+V +G++PNT   EG    T  KG I+V    Q++   VYA GD A  
Sbjct: 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCATH 322

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 18  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77
           EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++     C+
Sbjct: 171 ENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL 230
Query: 78  ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137
           A  +   +     +  +  G++   G  +   +V  NGKV  + + D N    DMV++ +
Sbjct: 231 AGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAV 287
Query: 138 GIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 179
           G RPNT+L  G++ L   G   V  R ++S   VYA+GD A  
Sbjct: 288 GFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 18  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77
           EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++     C+
Sbjct: 171 ENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL 230
Query: 78  ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137
           A  +   +     +  +  G++   G  +   +V  NGKV  + + D N    DMV++ +
Sbjct: 231 AGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAV 287
Query: 138 GIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 179
           G RPNT+L  G++ L   G   V  R ++S   VYA+GD A  
Sbjct: 288 GFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 28  DANRLVNVMKSCSGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARLFTPKIA 86
           D   LV  +    G   VV+GG    +E         +  V +V  E   +  +   +  
Sbjct: 201 DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP--LKLIKDNETR 258
Query: 87  SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNT 143
           +Y  +  K +G++ + G+ ++  + D+NG+V AV     N   R+ TD V +G+G +P +
Sbjct: 259 AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318
Query: 144 SLFEGQLTLE---KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 200
           +     L L+   KG + V   LQ+S  +VYAVGD+   P+++            ARKS 
Sbjct: 319 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMF----------KARKSG 368
Query: 201 KHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 240
            +A   +M     +K  Y P  Y       ++     +GE
Sbjct: 369 CYAARNVM----GEKISYTPKNYPDFLHTHYEVSFLGMGE 404

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 5/178 (2%)
Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV-INKINVTMV 70
           + G D   V  + +L +A  + + + +     AV++GGG+IG+E A SL  +  I+ T+V
Sbjct: 130 VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVV 189
Query: 71  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 130
                 M    +  ++       +   V    G  +   +   NGKV  V + D   L  
Sbjct: 190 ELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLDA 247
Query: 131 DMVVVGIGIRPNTSLF-EGQLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 186
           D+V++  G+ PNT L  +  L L+ +G I V  R+++S+  ++A GD    P  + G+
Sbjct: 248 DLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGK 305

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 9/232 (3%)
Query: 6   KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 65
           +     L GS    V  LR   D   L +   S +    +++GGG IG E A +     +
Sbjct: 110 RARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLGL 167
Query: 66  NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 125
           +VT++      + R+   +I ++        GV+   GT +  F     G++  V   DG
Sbjct: 168 SVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASDG 225
Query: 126 NRLPTDMVVVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
                D  ++ +G  P   L  +  L  ++G + V     +    V+AVGDVA++PL+  
Sbjct: 226 RSFVADSALICVGAEPADQLARQAGLACDRG-VIVDHCGATLAKGVFAVGDVASWPLR-A 283
Query: 185 GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD 236
           G  R LE   +A++ A    AAI+   K      LP  ++ +     Q  GD
Sbjct: 284 GGRRSLETYMNAQRQAAAVAAAIL--GKNVSAPQLPVSWTEIAGHRMQMAGD 333

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           VV+GGGYIG+E   +       V++V      +   +  ++ +   E  K  G+    G 
Sbjct: 175 VVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGH 233
Query: 105 VLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVT 160
            +  ++   NG ++A + + G  RL  D V+V +G RP T  F  +   L +    I + 
Sbjct: 234 SVEGYE---NGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAID 290
Query: 161 GRLQSSNSSVYAVGDVAAFPL 181
            R Q+S  +V+A+GDVA  P+
Sbjct: 291 ERCQTSMHNVWAIGDVAGEPM 311

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           VVIGGGYIG+E   +       VT++      ++  F  ++A+  ++  K KGV+ V   
Sbjct: 174 VVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNA 232
Query: 105 VLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR- 162
           +    +   +G  V      +   +  D V+V +G RPNT     +L LE+ GIK+T R 
Sbjct: 233 LAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD----ELGLEQIGIKMTNRG 288
Query: 163 -------LQSSNSSVYAVGDVAAFP 180
                   ++S  +++A+GD+   P
Sbjct: 289 LIEVDQQCRTSVPNIFAIGDIVPGP 313

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 203 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 262
Query: 105 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 156
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 263 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 322
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
           I V  R Q+   ++YA+GDV A P+
Sbjct: 323 IPVNTRFQTKIPNIYAIGDVVAGPM 347

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 105 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 156
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
           I V  R Q+   ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 105 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 156
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
           I V  R Q+   ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFV 101
           +V+GGG IG+E    +V +++   ++  E   M R+      +++   E  +K +G+   
Sbjct: 171 IVVGGGVIGLEL--GVVWHRLGAEVIVLE--YMDRILPTMDLEVSRAAERVFKKQGLTIR 226
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 157
            G  +++   ++ G    V L  G  L  D V+V +G RP T        G  T E+G I
Sbjct: 227 TGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRI 284
Query: 158 KVTGRLQSSNSSVYAVGDVAAFPL 181
            V   L++    +YA+GDV   P+
Sbjct: 285 PVDEHLRTRVPHIYAIGDVVRGPM 308

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 130 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 188
Query: 83  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 189 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 242
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 243 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 287

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23  LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
           LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   +  + +L  
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83  PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
             +     +    + + +     +++     NG    +  + G     DM++ G+G  PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
           +   E   + L+ KG I V  + +++  ++YA+GD+A         T    HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           ++ GGGYI +E A       +  T+++     ++R F            + KG++ +   
Sbjct: 174 LIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRILCED 232
Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF----EGQLTLEKGGIKVT 160
           ++ S   D++G+ VA   + G  +  D V + +G  PNT+       G  T E G I V 
Sbjct: 233 IIQSVSADADGRRVATTXKHGE-IVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVD 291
Query: 161 GRLQSSNSSVYAVGDV 176
              ++S   +YA+GDV
Sbjct: 292 AFSRTSTPGIYALGDV 307

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 46  VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 105
           +IG GYIG+E A  L      VT+V  E   + + F P +++   E   ++G++      
Sbjct: 171 IIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIETHLEFA 229
Query: 106 LSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKV----- 159
           +++ + D+ G  +    +DG RL   D V+  +G  PNT      L LE  GI+V     
Sbjct: 230 VAALERDAQGTTLVA--QDGTRLEGFDSVIWAVGRAPNTR----DLGLEAAGIEVQSNGM 283
Query: 160 --TGRLQSSN-SSVYAVGDV 176
             T   Q++N   VYA+GD+
Sbjct: 284 VPTDAYQNTNVPGVYALGDI 303

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 102 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 154
           + TV  S +   +GK++    N+  G       D V+  IG +    + +L    +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 155 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 197
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 198 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 223
                ++A   + E D   +F  D +  F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 184 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 241
Query: 102 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 154
           + TV  S +   +GK++    N+  G       D V+  IG +    + +L    +T++K
Sbjct: 242 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 301
Query: 155 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 197
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 302 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 361
Query: 198 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 223
                ++A   + E D   +F  D +  F+
Sbjct: 362 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 391

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 40  SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 99
           S G  +V+G  Y+ +ECA  L    ++ T++        R F  +++S   E+ +S G +
Sbjct: 184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS--IPLRGFDQQMSSLVTEHMESHGTQ 241
Query: 100 FVKGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 155
           F+KG V S    + +N   V        +  T   D V+  IG  P T      L LEK 
Sbjct: 242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT----LNLEKA 297
Query: 156 GIKVTGRLQ---------SSNSSVYAVGDVA 177
           GI    + Q         +S   +YA+GDVA
Sbjct: 298 GISTNPKNQKIIVDAQEATSVPHIYAIGDVA 328

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 102 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 154
           + TV  S +   +GK++    N+  G       D V+  IG +    + +L    +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 155 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 197
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 198 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 223
                ++A   + E D   +F  D +  F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 40  SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 99
           S G  +V+G  Y+ +ECA  L    ++ T++        R F  +++S   E+ +S G +
Sbjct: 210 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQ 267
Query: 100 FVKGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 155
           F+KG V S    + +N   V        +  T   D V+  IG  P T      L LEK 
Sbjct: 268 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR----TLNLEKA 323
Query: 156 GIKVTGRLQ---------SSNSSVYAVGDVA 177
           GI    + Q         +S   +YA+GDVA
Sbjct: 324 GISTNPKNQKIIVDAQEATSVPHIYAIGDVA 354

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF 
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 102 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 149
           K  V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    + 
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 150 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 178
             + L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF 
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 102 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 149
           K  V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    + 
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 150 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 178
             + L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF 
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 102 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 149
           K  V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    + 
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 150 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 178
             + L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 46  VIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           V+G GYI +E A   VIN +   T +F   H   R F P I+    E   ++G +     
Sbjct: 172 VVGAGYIAVELAG--VINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNA 229
Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTLEKGGIKVTG 161
           +  +   +++G +  + L DG     D ++  IG  P   N +L    +   + G  V  
Sbjct: 230 IPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVD 288
Query: 162 RLQSSN-SSVYAVGD 175
           + Q++N   +YAVGD
Sbjct: 289 KYQNTNIEGIYAVGD 303

>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 28  DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 87
           DA  +   M+     N V+IGGGYIG+E A +      NVTM+      + R F  ++  
Sbjct: 135 DALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTD 194
Query: 88  YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147
             EE  K K V      +  +  ++   +V  V + D      ++V++  GI+PN  L +
Sbjct: 195 ILEEKLK-KHVNLRLQEI--TMKIEGEERVEKV-VTDAGEYKAELVILATGIKPNIELAK 250
Query: 148 --GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
             G    E G I    ++Q+S  +VYA GDVA        ETR   HV + R+
Sbjct: 251 QLGVRIGETGAIWTNEKMQTSVENVYAAGDVA--------ETR---HVITGRR 292

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 33  VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 92
           V  ++   G   V++GGG   ++    L+ N  +VT+V             K A   E  
Sbjct: 155 VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERA 211
Query: 93  YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGNR--LPTDMVVVGIGIRPNTS-LFE 147
             +  +     T ++S + +SNG +  V+LR  DG++  +  D +++ IG + N   L  
Sbjct: 212 RANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR 270
Query: 148 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
             L L +  + V   +++S   +YA GD+A +P KL
Sbjct: 271 WDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 45  VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 103
           V++GGGYIG+E A   + + + V T +      + R F   +     +   +KG+  +  
Sbjct: 195 VIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYE 252
Query: 104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT--- 160
             +S   V S      V L +G  +  D V++  G  PNT+     L LE+ G+KV    
Sbjct: 253 ATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERAGVKVNEFG 306
Query: 161 -----GRLQSSNSSVYAVGDV 176
                 ++ ++ S ++AVGDV
Sbjct: 307 AVVVDEKMTTNVSHIWAVGDV 327

>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLFTPKIASYYEEYYKSKGVKFVKG 103
           VVIG GYIG+E  +  V  +I   +   E A  +      +I   ++   + +G+KF   
Sbjct: 181 VVIGAGYIGLEMGS--VWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLK 238
Query: 104 TVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 156
           T +   D   +G  + V    G     +  D+V+V  G  P TS       G  T + G 
Sbjct: 239 TKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGR 298
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
           I V  R  ++ S VYA+GDV   P+
Sbjct: 299 ILVNERFSTNVSGVYAIGDVIPGPM 323

>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 41  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
           G    VIGGG  G+E A  L     +VT++          F P++ +      K + +K 
Sbjct: 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE---------FAPEMKADQVLQDKVRSLKN 405
Query: 101 VKGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDM-------VVVGIGIRPNTSLFEGQL 150
           V   +L++   +  G   KVV +  RD  R+  D+       + V IG+ PNT   EG L
Sbjct: 406 VD-IILNAQTTEVKGDGSKVVGLEYRD--RVSGDIHSVALAGIFVQIGLLPNTHWLEGAL 462
Query: 151 TLEK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
              + G I +  + ++S   V+A GD    P K +
Sbjct: 463 ERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQI 497

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	5e-71
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	5e-68
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-67
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	7e-67
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	8e-66
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	8e-65
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	4e-44
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	4e-43
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	6e-43
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	3e-42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-41
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	1e-40
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	1e-39
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-38
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	2e-38
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	7e-38
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-37
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	5e-34
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	8e-31
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	6e-19
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-18
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-18
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	9e-18
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-17
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	3e-17
4dna_A	463	Probable glutathione reductase; structural genomic	7e-17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-16
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	2e-16
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-16
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	5e-16
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	1e-15
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	8e-15
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-14
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-13
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	2e-13
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	2e-13
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	5e-13
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	1e-12
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	2e-12
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	7e-12
4fk1_A	304	Putative thioredoxin reductase; structural genomic	7e-12
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-11
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-08
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	1e-11
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	1e-11
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-11
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	4e-11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	4e-11
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	5e-11
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	7e-11
1ojt_A	482	Surface protein; redox-active center, glycolysis,	8e-11
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-10
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	2e-10
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-10
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	4e-08
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	3e-10
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	3e-10
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	1e-09
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-09
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	2e-09
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	4e-09
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	2e-08
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	2e-05
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	4e-08
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	1e-07
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	8e-07
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	9e-07
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	2e-06
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	5e-06
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	6e-06
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	6e-06
3r9u_A	315	Thioredoxin reductase; structural genomics, center	7e-06
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	2e-05
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	2e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-05

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  228 bits (583), Expect = 5e-71
 Identities = 69/306 (22%), Positives = 123/306 (40%), Gaps = 19/306 (6%)

Query: 6   KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 64
            L     +G++        R + D   L  + +     +  +IGGG++G E A +L    
Sbjct: 146 SLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKA 203

Query: 65  ----INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 120
                 V  +FPE   M ++    ++++  E  + +GVK +   ++ S  V      + +
Sbjct: 204 RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLI 261

Query: 121 NLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLE--KGGIKVTGRLQSSNSSVYAVGDVA 177
            L+DG ++ TD +V  +G+ PN  L +   L ++   GG +V   LQ+  S+++  GD A
Sbjct: 262 KLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAA 320

Query: 178 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGD 236
            F    LG  RR+EH D A  S + A   +    K   + +   F+S +   + ++  G 
Sbjct: 321 CFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAAKP--YWHQSMFWSDLGPDVGYEAIGL 377

Query: 237 NVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL 294
                  V     +          +    G   E  T+ E   I        V +   + 
Sbjct: 378 VDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQG 437

Query: 295 ETQGLG 300
           E  G G
Sbjct: 438 EDYGKG 443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  218 bits (557), Expect = 5e-68
 Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 9/256 (3%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           +  +   +V YLR L ++  L   M      + VVIG G+IG+E AA+     + V +V 
Sbjct: 115 VPNASLPDVLYLRTLDESEVLRQRMPD--KKHVVVIGAGFIGLEFAATARAKGLEVDVVE 172

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                MAR+ TP+I+SY+ + +   G++   G   +    +   +V  V L DGN LP D
Sbjct: 173 LAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCD 231

Query: 132 MVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
           +VVVG+G+ PN  +     L     GI V  +L +S+  + A+GD A F     GET R+
Sbjct: 232 LVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRV 290

Query: 191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFS 248
           E V +A   A+   A +    K   +D  P+F+S       Q  G   G  +VV  G+ +
Sbjct: 291 ESVQNATDQARCVAARLTGDAKP--YDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVA 348

Query: 249 GTTFGAYWVNKGRLVG 264
             +F A+    G+L+G
Sbjct: 349 ERSFSAFCYKAGKLIG 364

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  218 bits (557), Expect = 1e-67
 Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 9/258 (3%)

Query: 11  GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV 70
             +   A N  YLR L DA  +   + +      VVIGGGYIG+E AA+ +   ++VT++
Sbjct: 121 SGAVGKANNFRYLRTLEDAECIRRQLIA--DNRLVVIGGGYIGLEVAATAIKANMHVTLL 178

Query: 71  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLP 129
              A  + R+  P ++++YE  ++  GV    GT +  F++ +   KV AV   DG RLP
Sbjct: 179 DTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLP 238

Query: 130 TDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR 188
            D+V+ GIG+ PN  L     L ++  GI +   +Q+S+  + AVGD A F  +L     
Sbjct: 239 ADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWV 297

Query: 189 RLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGN 246
           R+E V +A + A+   A +         +  P+F+S  + +  +  G + G   ++  G+
Sbjct: 298 RIESVPNALEQARKIAAILCGKVPR--DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGS 355

Query: 247 FSGTTFGAYWVNKGRLVG 264
            +   F  +++   R++ 
Sbjct: 356 LAQPDFSVFYLQGDRVLA 373

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  215 bits (550), Expect = 7e-67
 Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 11/256 (4%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           L GS    V  LR   D   L +   S      +++GGG IG E A +     ++VT++ 
Sbjct: 116 LPGSQLPGVVTLRTYGDVQVLRDSWTS--ATRLLIVGGGLIGCEVATTARKLGLSVTILE 173

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                + R+   +I ++        GV+   GT +  F  +  G++  V   DG     D
Sbjct: 174 AGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASDGRSFVAD 231

Query: 132 MVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
             ++ +G  P   L     L  +  G+ V     +    V+AVGDVA++PL+  G  R L
Sbjct: 232 SALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLR-AGGRRSL 289

Query: 191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFS 248
           E   +A++ A    AAI+  + +     LP  ++ +     Q  GD  G  + V  G   
Sbjct: 290 ETYMNAQRQAAAVAAAILGKNVS--APQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPG 347

Query: 249 GTTFGAYWVNKGRLVG 264
                 + + + R+  
Sbjct: 348 SGAALLFRLQERRIQA 363

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  212 bits (543), Expect = 8e-66
 Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 9/257 (3%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
             G+D   V  +R   DA+RL+  + +    NAVVIGGGYIG+E AA L    +NVT++ 
Sbjct: 124 CVGADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLE 182

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                +AR+    ++ +Y+  +++ GV    G  +   + D   KV  V ++DG+ +P D
Sbjct: 183 ALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDGSVIPAD 241

Query: 132 MVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRR 189
           +V+VGIGI P          +    G+ V    ++S + VYA+GD AA       G   R
Sbjct: 242 IVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIR 300

Query: 190 LEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNF 247
           LE V +A   A  A   I        +   P+F+S  + L  Q  G + G    V  G+ 
Sbjct: 301 LESVQNANDMATAAAKDICGAPVP--YKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDP 358

Query: 248 SGTTFGAYWVNKGRLVG 264
           +  +F   ++  G++V 
Sbjct: 359 ATRSFSVVYLKGGKVVA 375

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  210 bits (536), Expect = 8e-65
 Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 14/255 (5%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
                 V  LR L DA R+   ++       +++GGG IG+E AA+     ++V++V  +
Sbjct: 120 QGATMPVHTLRTLEDARRIQAGLRP--QSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              M+R     +A +   Y+ ++GV       ++            V L DG R+  DMV
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMV 231

Query: 134 VVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH 192
           VVGIG+  N +L     L  +  GI V    +++   VYA+GDV      L G   R+E 
Sbjct: 232 VVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIET 290

Query: 193 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE---VVHYGNFSG 249
             +A+         +++P     +  LP+++S    L  Q  G   G+   V    +   
Sbjct: 291 WSNAQNQGIAVARHLVDPTAPG-YAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDA 349

Query: 250 TTFGAYWVNKGRLVG 264
             F    + KGR+VG
Sbjct: 350 PKFTLIELQKGRIVG 364

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  156 bits (398), Expect = 4e-44
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 4/180 (2%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D +N+  +R    A +L          N VVIG GYIG+E A +       VT++ 
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                +      +      E  ++  +    G  +  +  + +G+V  V + D N    D
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERY--EGDGRVQKV-VTDKNAYDAD 236

Query: 132 MVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
           +VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD              +
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNI 296

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  154 bits (391), Expect = 4e-43
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           GS  E +   + L+ A   V ++++       VIG G IGME    LV  K  V +    
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLEN--SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESL 179

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
            + + + F  ++ +  ++  + + V F     +   +  +NG V+         +  D  
Sbjct: 180 ENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVL---ETSEQEISCDSG 236

Query: 134 VVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
           +  + + P  +  + ++       I V   LQ+S  +V+A+GD  +   + + ET   
Sbjct: 237 IFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYA 294

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  153 bits (390), Expect = 6e-43
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D+  V   ++  DA +L             +IG GYIG E A +      NV ++ 
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAK--TITIIGSGYIGAELAEAYSNQNYNVNLID 179

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                + + F  +      + Y++ GV  V G+ +++F+ + + +++     DG  + +D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSD 237

Query: 132 MVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
           + ++ IG RPNT L +G++ + + G I     + SSN  ++A GD AA           +
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYI 297

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  152 bits (386), Expect = 3e-42
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 13  SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 72
             +  EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++  
Sbjct: 166 FEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDV 225

Query: 73  EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 132
              C+A  +   +     +  +  G++   G  +       NGKV  + + D N    DM
Sbjct: 226 VDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEV--AGNGKVEKI-ITDKNEYDVDM 282

Query: 133 VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
           V++ +G RPNT+L  G++ L   G   V  R ++S   VYA+GD A        +T  +
Sbjct: 283 VILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYI 341

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  149 bits (380), Expect = 2e-41
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV-INKINVTMV 70
           + G D   V  + +L +A  + + + +     AV++GGG+IG+E A SL  +  I+ T+V
Sbjct: 130 VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVV 189

Query: 71  FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 130
                 M    +  ++       +   V    G  +   +   NGKV  V + D   L  
Sbjct: 190 ELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLDA 247

Query: 131 DMVVVGIGIRPNTSLF-EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR 188
           D+V++  G+ PNT L  +  L L  +G I V  R+++S+  ++A GD    P  + G+  
Sbjct: 248 DLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPG 307

Query: 189 RL 190
             
Sbjct: 308 FF 309

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  147 bits (374), Expect = 1e-40
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 6/181 (3%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G + + V       DA  +   M+     N V+IGGGYIG+E A +      NVTM+ 
Sbjct: 119 IEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIV 178

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                + R F  ++    EE  K K V      +      +   +V  V + D      +
Sbjct: 179 RGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKI--EGEERVEKV-VTDAGEYKAE 234

Query: 132 MVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 189
           +V++  GI+PN  L +   + + E G I    ++Q+S  +VYA GDVA     + G    
Sbjct: 235 LVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVW 294

Query: 190 L 190
           +
Sbjct: 295 V 295

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  145 bits (368), Expect = 1e-39
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
             G D + V  L+ + DA R++  +++    +  +IGGG IG+E A + V     V M+ 
Sbjct: 157 WEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIE 216

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
              H    ++   +A Y  +      ++ +    + +F    N +V AV   D      D
Sbjct: 217 RNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVET-DKGTYKAD 272

Query: 132 MVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 189
           +V+V +G++PNT   EG  +    KG I+V   +Q++   VYA GD A     +      
Sbjct: 273 LVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDH 332

Query: 190 L 190
           +
Sbjct: 333 I 333

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  143 bits (364), Expect = 2e-38
 Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 7/177 (3%)

Query: 16  DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75
           +A+ +  LR++ D +R+   +      +A VIGGG+IG+E   +L    I VT+V     
Sbjct: 162 EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ 221

Query: 76  CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135
            M      ++A+Y  E+ K+  V+ V    + +   + NG VV +    G+ + TDM+++
Sbjct: 222 VMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDAL--EENGAVVRLK--SGSVIQTDMLIL 276

Query: 136 GIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
            IG++P +SL +G  L L  +G IKV  + Q+S+  +YA+GD       +      +
Sbjct: 277 AIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMI 333

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  140 bits (354), Expect = 2e-38
 Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 14/210 (6%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G   + +  + DL D  R             +++G G IG E A  L      + +V 
Sbjct: 118 VEGDAQDALYPINDLEDYARFRQAAAG--KRRVLLLGAGLIGCEFANDLSSGGYQLDVVA 175

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
           P    M  L  P  A   +   +  GV+F  G VL+S  +   G+ +  +L DG  +P D
Sbjct: 176 PCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLAS--LKKAGEGLEAHLSDGEVIPCD 233

Query: 132 MVVVGIGIRPNTSL-FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
           +VV  +G+RP T L F   L +   GI V   L++S++++YA+GD A        +   L
Sbjct: 234 LVVSAVGLRPRTELAFAAGLAVN-RGIVVDRSLRTSHANIYALGDCAEV------DGLNL 286

Query: 191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLP 220
            +V      A+     +          Y P
Sbjct: 287 LYVMPLMACARALAQTLAGNPSQ--VAYGP 314

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  139 bits (354), Expect = 7e-38
 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 9/179 (5%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T++   
Sbjct: 121 GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRS 180

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
                 L    +     +    + + +     +++ +    G  +      G     DM+
Sbjct: 181 DKINK-LMDADMNQPILDELDKREIPYRLNEEINAIN----GNEITFK--SGKVEHYDMI 233

Query: 134 VVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190
           + G+G  PN+   E   + L  KG I V  + +++  ++YA+GD+A    + +     +
Sbjct: 234 IEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 292

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  139 bits (353), Expect = 4e-37
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 20/198 (10%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D      LR++ D +R++  ++  +  +A V+GGG+IG+E   SL    I  T++ 
Sbjct: 122 IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLE 181

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV-------------- 117
                M      ++A +  +  + +GV    GT LS         V              
Sbjct: 182 LADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI 240

Query: 118 ---VAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EGQLTL-EKGGIKVTGRLQSSNSSVYA 172
              +++ L +G  L TD++++ IG+RP T L  +  L + E GGIKV   +Q+S+ ++YA
Sbjct: 241 KGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYA 300

Query: 173 VGDVAAFPLKLLGETRRL 190
           VGD       + G+   +
Sbjct: 301 VGDAVEEQDFVTGQACLV 318

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  128 bits (324), Expect = 5e-34
 Identities = 49/283 (17%), Positives = 106/283 (37%), Gaps = 29/283 (10%)

Query: 17  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
           A+ +  L    DA ++ +  K+   G A +IGGG +G+E A +++ +    ++     + 
Sbjct: 124 ADEIFSLYSYDDALKIKDECKN--KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP 181

Query: 77  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 136
           + R        + ++     G+K    +                    G+ + +  V+  
Sbjct: 182 LERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITA 226

Query: 137 IGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 196
           +G++PN    +      K GI V   +++S   +YA GDVA F  K  G       ++ A
Sbjct: 227 VGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDVAEFYGKNPG------LINIA 280

Query: 197 RKSAKHAVAAIMEPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 253
            K  + A       D +  +   +P    +V  +S    GD         + +     + 
Sbjct: 281 NKQGEVAGLNACGEDAS--YSEIIPSPILKVSGISIISCGDIENNKPSKVFRSTQEDKYI 338

Query: 254 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 296
              + + ++  + + G        + KA       ++++ L+ 
Sbjct: 339 VCMLKENKIDAAAVIGDVS-LGTKLKKAIDSSKSFDNISSLDA 380

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  119 bits (300), Expect = 8e-31
 Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 17  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
            E +  LR + DA+R+   +++   G A++IGGG+IG+E A +L     +V ++    H 
Sbjct: 121 KEYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLI----HR 174

Query: 77  MARL--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 134
            A       ++++  ++  +  GVKF   + L   + +         L +   +   + +
Sbjct: 175 GAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE-------GVLTNSGFIEGKVKI 227

Query: 135 VGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 185
             IGI PN  L     +   + GI +    ++S   VYA+GD A +   + G
Sbjct: 228 CAIGIVPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEYSGIIAG 278

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 86.9 bits (216), Expect = 6e-19
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 42  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 98
              + +GGG+I +E A    +       VT+ +     + R F   I     +   + G+
Sbjct: 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGI 250

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 153
           + +     +   ++++G    V    G  L  D+V++ IG  P T+     L L      
Sbjct: 251 EIMTNENPAKVSLNTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTN----DLQLGNVGVK 305

Query: 154 ---KGGIKVTGRLQSSNSSVYAVGDV 176
              KGG++V    +++  ++YA+GD+
Sbjct: 306 LTPKGGVQVDEFSRTNVPNIYAIGDI 331

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 10/164 (6%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
            ++G GYI +E     VI ++  +  +       + R F   + +  E   K   +  V 
Sbjct: 180 GIVGSGYIAVELIN--VIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVT 236

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTS---LFEGQLTLEKGGIK 158
              +      S+  +  ++L DG      D V+  +G  P+T    L +  +      I 
Sbjct: 237 FADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIV 295

Query: 159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 202
           V    ++S +++YAVGD          E   L  + +  +    
Sbjct: 296 VDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNK 339

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 17/146 (11%)

Query: 42  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 98
             A+ +GGGYI +E A    +       V + +     + R F  ++     E  ++ G+
Sbjct: 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGI 246

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 153
                   +    +++G    V    G     D+V++ IG  P +      L LE     
Sbjct: 247 NVRTHENPAKVTKNADGTRH-VVFESGAEADYDVVMLAIGRVPRSQ----TLQLEKAGVE 301

Query: 154 ---KGGIKVTGRLQSSNSSVYAVGDV 176
               G IKV    +++  ++YA+GDV
Sbjct: 302 VAKNGAIKVDAYSKTNVDNIYAIGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 82.9 bits (206), Expect = 9e-18
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 26/149 (17%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 95
               V+G GYIG+E     VIN +       + H           F P I+    E   +
Sbjct: 168 ERVAVVGAGYIGVELGG--VINGLGA-----KTHLFEMFDAPLPSFDPMISETLVEVMNA 220

Query: 96  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE-- 153
           +G +     +  +   +++G +  + L DG     D ++  IG  P        + LE  
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPAND----NINLEAA 275

Query: 154 ------KGGIKVTGRLQSSNSSVYAVGDV 176
                 KG I V     ++   +YAVGD 
Sbjct: 276 GVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 17/145 (11%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 95
              VV+G GYIG+E A   V + +       E H + R       F   I +   ++Y  
Sbjct: 186 KKVVVVGAGYIGIELAG--VFHGLGS-----ETHLVIRGETVLRKFDECIQNTITDHYVK 238

Query: 96  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSL---FEGQLT 151
           +G+   K + +   + +     + +++ D   +   D ++  IG + +  +     G   
Sbjct: 239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKL 298

Query: 152 LEKGGIKVTGRLQSSNSSVYAVGDV 176
                I       ++  ++Y++GDV
Sbjct: 299 NSHDQIIADEYQNTNVPNIYSLGDV 323

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 81.4 bits (202), Expect = 3e-17
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 21/146 (14%)

Query: 42  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 98
            + V++GGGYIG+E A     L    +  T++      + R F   +     +   +KG+
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGL---GVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGI 247

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 153
             +    +S   V S      V L +G  +  D V++  G  PNT+     L LE     
Sbjct: 248 SIIYEATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERAGVK 301

Query: 154 ---KGGIKVTGRLQSSNSSVYAVGDV 176
               G + V  ++ ++ S ++AVGDV
Sbjct: 302 VNEFGAVVVDEKMTTNVSHIWAVGDV 327

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 80.6 bits (200), Expect = 7e-17
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 20/146 (13%)

Query: 42  GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 98
            + ++ GGGYI +E A     L    +  T+++     +   F   +        + KG+
Sbjct: 171 ESILIAGGGYIAVEFANIFHGL---GVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGI 226

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 153
           + +   ++ S   D++G+ V         +  D V++ +G  PNT+     L LE     
Sbjct: 227 RILCEDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTN----GLGLEAAGVR 281

Query: 154 ---KGGIKVTGRLQSSNSSVYAVGDV 176
               G I V    ++S   +YA+GDV
Sbjct: 282 TNELGAIIVDAFSRTSTPGIYALGDV 307

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--FTPKIASYYEEYYKSK 96
           G  +V+G GYIG+ECA    +  +       E   M R   L  F  ++A       + +
Sbjct: 188 GKTLVVGAGYIGLECAG--FLKGLGY-----EPTVMVRSIVLRGFDQQMAELVAASMEER 240

Query: 97  GVKFVKGTVLSSFDVDSNGKVVA----VNLRDGNRLPTDMVVVGIGIRPNTS---LFEGQ 149
           G+ F++ TV  S +   +GK++     V   + +    D V+  IG +       L    
Sbjct: 241 GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAG 300

Query: 150 LTLEKGGIKVTGRLQSSNSSVYAVGDV 176
           +T++K  I V  +  ++ +++YAVGD+
Sbjct: 301 VTVQKDKIPVDSQEATNVANIYAVGDI 327

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 99
           +V+G G  G E        ++   VT+V   +     +        A   EE +  +GV+
Sbjct: 186 IVVGSGVTGAEFVD--AYTELGVPVTVV--AS--QDHVLPYEDADAALVLEESFAERGVR 239

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 159
             K    +S  V   G  V V + DG  +     ++ IG  PNT    G L LE+ GI++
Sbjct: 240 LFKNARAAS--VTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT---SG-LGLERVGIQL 293

Query: 160 TGR--------LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208
                       ++  + +YA GD              L  V  A    + A+   +
Sbjct: 294 GRGNYLTVDRVSRTLATGIYAAGDCTGLLP--------LASV--AAMQGRIAMYHAL 340

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 99
           VV+GG    +E       N       M+         L      +  +Y  +  K +G++
Sbjct: 218 VVVGGSKTAVEYGC--FFNATGRRTVML--VR--TEPLKLIKDNETRAYVLDRMKEQGME 271

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNTS-LFE--GQLTLE 153
            + G+ ++  + D+NG+V AV     N   R+ TD V +G+G +P ++ L +  G     
Sbjct: 272 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGP 331

Query: 154 KGGIKVTGRLQSSNSSVYAVGDVAAFP 180
           KG + V   LQ+S  +VYAVGD+   P
Sbjct: 332 KGEVLVNEYLQTSVPNVYAVGDLIGGP 358

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 77.9 bits (193), Expect = 5e-16
 Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 40/193 (20%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 95
               +IG GYIG+E A   ++          E   +A        F P +++   E   +
Sbjct: 167 KRVAIIGAGYIGIELAG--LLRSFGS-----EVTVVALEDRLLFQFDPLLSATLAENMHA 219

Query: 96  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE-- 153
           +G++      +++ + D+ G  + V          D V+  +G  PNT      L LE  
Sbjct: 220 QGIETHLEFAVAALERDAQGTTL-VAQDGTRLEGFDSVIWAVGRAPNTR----DLGLEAA 274

Query: 154 ------KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE--HVDSARKSAKHAVA 205
                  G +       ++   VYA+GD+          T R +   V  A  + +    
Sbjct: 275 GIEVQSNGMVPTDAYQNTNVPGVYALGDI----------TGRDQLTPV--AIAAGRRLAE 322

Query: 206 AIMEPDKTDKFDY 218
            + +     K DY
Sbjct: 323 RLFDGQSERKLDY 335

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 33/184 (17%)

Query: 45  VVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFT---PKIASYYEEYYKSKGV 98
            VIG   + +E A   A L      VT++         LF    P I       ++++G+
Sbjct: 180 AVIGSSVVALELAQAFARL---GSKVTVL-----ARNTLFFREDPAIGEAVTAAFRAEGI 231

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEK 154
           + ++ T  S         V+         L  D ++V  G  PNT        G     +
Sbjct: 232 EVLEHTQASQVAHMDGEFVLTT---THGELRADKLLVATGRTPNTRSLALDAAGVTVNAQ 288

Query: 155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTD 214
           G I +   +++SN ++YA GD    P           +V  A  +   A   +       
Sbjct: 289 GAIVIDQGMRTSNPNIYAAGDCTDQPQ--------FVYV--AAAAGTRAAINMT--GGDA 336

Query: 215 KFDY 218
             D 
Sbjct: 337 ALDL 340

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 74.5 bits (184), Expect = 8e-15
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 32/156 (20%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYYKS 95
           G +V++G GYI +E A   +++ +       +   M R       F   I++   E  ++
Sbjct: 188 GRSVIVGAGYIAVEMAG--ILSALGS-----KTSLMIRHDKVLRSFDSMISTNCTEELEN 240

Query: 96  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-------DMVVVGIGIRPNTSLFEG 148
            GV+ +K + +       +G  V++      RLP        D ++  IG  PNT     
Sbjct: 241 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK---- 296

Query: 149 QLTLE--------KGGIKVTGRLQSSNSSVYAVGDV 176
            L+L         KG I V     ++   +YAVGDV
Sbjct: 297 DLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 31/154 (20%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--FTPKIASYYEEYYKSK 96
           G  +V+G  Y+ +ECA    +  I +     +   M R   L  F  +++S   E+ +S 
Sbjct: 186 GKTLVVGASYVALECAG--FLTGIGL-----DTTVMMRSIPLRGFDQQMSSLVTEHMESH 238

Query: 97  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLT 151
           G +F+KG V S        ++  V   D           D V+  IG  P T      L 
Sbjct: 239 GTQFLKGCVPSHIKKLPTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETR----TLN 293

Query: 152 LEKGGIKVTGR---------LQSSNSSVYAVGDV 176
           LEK GI    +           +S   +YA+GDV
Sbjct: 294 LEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 27/150 (18%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 98
           +V+GGG IG+E     V +++   V ++  E   M R   P    +++   E  +K +G+
Sbjct: 171 IVVGGGVIGLELGV--VWHRLGAEVIVL--EY--MDR-ILPTMDLEVSRAAERVFKKQGL 223

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIK 158
               G  +++  V    K   V L  G  L  D V+V +G RP T   EG L+LE  G+ 
Sbjct: 224 TIRTGVRVTA--VVPEAKGARVELEGGEVLEADRVLVAVGRRPYT---EG-LSLENAGLS 277

Query: 159 VTGR--------LQSSNSSVYAVGDVAAFP 180
              R        L++    +YA+GDV   P
Sbjct: 278 TDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 32/156 (20%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--FTPKIASYYEEYYKSK 96
           G  +V+G  Y+ +ECA    +  I +     +   M R   L  F   +A+   E+ +  
Sbjct: 211 GKTLVVGASYVALECAG--FLAGIGL-----DVTVMVRSILLRGFDQDMANKIGEHMEEH 263

Query: 97  GVKFVKGTVLSSFDVDSNGK--VVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQ 149
           G+KF++  V    +    G    + V  +  N         + V++ IG    T     +
Sbjct: 264 GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----K 319

Query: 150 LTLEKGGIKVTGRL---------QSSNSSVYAVGDV 176
           + LE  G+K+  +          Q++   +YA+GD+
Sbjct: 320 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 30/153 (19%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 98
           ++ G G IGME     V+     +VT+V  E   + R   P     ++   E+ +K  GV
Sbjct: 175 IIAGAGAIGMEFGY--VLKNYGVDVTIV--EF--LPR-ALPNEDADVSKEIEKQFKKLGV 227

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKG 155
             +  T + S  +   G  V V +        L  + V+  IG  PN    EG   L+K 
Sbjct: 228 TILTATKVES--IADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV---EG-YGLDKA 281

Query: 156 GIKVTGR--------LQSSNSSVYAVGDVAAFP 180
           G+ +T R        ++++   +YA+GDV    
Sbjct: 282 GVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 29/156 (18%)

Query: 42  GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 99
           G  +VIG  Y+ +ECA    +  +  +VT++      + R F  ++A    +Y ++ GVK
Sbjct: 287 GKTLVIGASYVALECAG--FLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVK 342

Query: 100 FVKGTVLSSFDVDSNGKV---------VAVNLRDGNRLPT--DMVVVGIGIRPNTSLFEG 148
           F K  V                     V  +  DG +     + V+  +G  P  S    
Sbjct: 343 FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS---- 398

Query: 149 QLTLE--------KGGIKVTGRLQSSNSSVYAVGDV 176
           ++  E         G +  T   Q++ S+VYA+GD+
Sbjct: 399 KVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 28/153 (18%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 98
           VVIG GYIG+E  +  V  +I   VT+V  E    +    P    +I   ++   + +G+
Sbjct: 181 VVIGAGYIGLEMGS--VWGRIGSEVTVV--EF--ASE-IVPTMDAEIRKQFQRSLEKQGM 233

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 155
           KF   T +   D   +G  + V    G        D+V+V  G  P T    G L L+K 
Sbjct: 234 KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT---SG-LNLDKI 289

Query: 156 GIKVTGR--------LQSSNSSVYAVGDVAAFP 180
           G++              ++ S VYA+GDV   P
Sbjct: 290 GVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 27/152 (17%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 99
            V G G IG+E      ++++   V +          +      ++  Y E+ +  +   
Sbjct: 178 AVFGPGVIGLELGQ--ALSRLGVIVKVF--GR--SGSVANLQDEEMKRYAEKTFN-EEFY 230

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGGI 157
           F     + S     +   V    + G +       V+   G + N    +  L LE   I
Sbjct: 231 FDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DK-LGLENTSI 286

Query: 158 KVTGR---------LQSSNSSVYAVGDVAAFP 180
           ++  +         LQ+S   ++  GD     
Sbjct: 287 ELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 28/153 (18%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 98
           +V+GGG IG+E  +  V  ++   VT+V  E   +          ++A   +     +G+
Sbjct: 202 IVVGGGVIGLELGS--VWARLGAKVTVV--EF--LDT-ILGGMDGEVAKQLQRMLTKQGI 254

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKG 155
            F  G  ++      +G  V      G     L  ++V++  G +P+T   +G L L K 
Sbjct: 255 DFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST---DG-LGLAKA 310

Query: 156 GIKVTGR--------LQSSNSSVYAVGDVAAFP 180
           G+ +  R         Q+S + VYA+GDV   P
Sbjct: 311 GVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 64.5 bits (158), Expect = 7e-12
 Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 14/145 (9%)

Query: 41  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
               ++I            LV N     ++    +      +  I     +   +K +  
Sbjct: 146 DQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN----ELSQTIM----DELSNKNIPV 197

Query: 101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL---EKGGI 157
           +  ++  +   +  G +  V    G R+      +           E QL       G  
Sbjct: 198 ITESI-RTLQGE-GGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIE-QLGCELQSNGTF 254

Query: 158 KVTGRLQSSNSSVYAVGDVAAFPLK 182
            +    ++S  ++Y  G+       
Sbjct: 255 VIDDFGRTSEKNIYLAGETTTQGPS 279

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 13/148 (8%)

Query: 41  GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
           G    VIGGG  G+E A  L     +VT++         +   ++    ++    K V  
Sbjct: 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLL----EFAPEMKADQVLQ--DKVRSLKNVDI 408

Query: 101 VKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKG 155
           +     +    D + KVV +  RD        +    + V IG+ PNT   EG L   + 
Sbjct: 409 ILNAQTTEVKGDGS-KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRM 467

Query: 156 G-IKVTGRLQSSNSSVYAVGDVAAFPLK 182
           G I +  + ++S   V+A GD    P K
Sbjct: 468 GEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 24/149 (16%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYE------EYYKSK 96
           V+IG GYIG+E A+  +   +     ++  E          +     E            
Sbjct: 176 VIIGAGYIGLEIAS--IFRLMGVQTHII--E-------MLDRALITLEDQDIVNTLLSIL 224

Query: 97  GVKFVKGT-VLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS--LFEGQLT 151
            +     + V     +  +   V  + +DG++  + T+ VV+  G RP       E  L+
Sbjct: 225 KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLS 284

Query: 152 LEKGGIKVTGRLQSSNSSVYAVGDVAAFP 180
           + K GI V   ++++  +V+A GD     
Sbjct: 285 ISKTGIVVDETMKTNIPNVFATGDANGLA 313

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 19/154 (12%)

Query: 40  SGGNAVVIGGGYIGMECAASLVINKINVTMV-----FPEA-HCMARLFTPKIASYYEEYY 93
            G   V++GGG   ++    L+ N  +VT+V     F         +         E   
Sbjct: 162 KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEV---------ERAR 212

Query: 94  KSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGN--RLPTDMVVVGIGIRPNTSLFEG-Q 149
            +  +     T ++S +  +     V +   DG+   +  D +++ IG + N        
Sbjct: 213 ANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWD 272

Query: 150 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
           L L +  + V   +++S   +YA GD+A +P KL
Sbjct: 273 LELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 30/151 (19%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 98
            +IGGG IG+E  +  V +++   VT+V  E              ++A   +++ K +G+
Sbjct: 187 TIIGGGIIGLEMGS--VYSRLGSKVTVV--E---FQPQIGASMDGEVAKATQKFLKKQGL 239

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLTLE 153
            F   T + S   + +  VV + + D        L  ++++V +G RP      G L  E
Sbjct: 240 DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI---AG-LGAE 295

Query: 154 KGGIKVTGR--------LQSSNSSVYAVGDV 176
           K G++V  R          S    +  VGDV
Sbjct: 296 KIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 32/177 (18%), Positives = 48/177 (27%), Gaps = 23/177 (12%)

Query: 6   KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG--YIGMECAASLVIN 63
           +     L  ++   V    DL              G   VV      Y+G   A  L   
Sbjct: 495 RFHTTALPIAEGMQVLGPDDLFAGRLPD-------GKKVVVYDDDHYYLGGVVAELLAQK 547

Query: 64  KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123
              V++V P A   +        +  +      GV  V    + +      G V   +  
Sbjct: 548 GYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG---AGGVTVRDTY 604

Query: 124 DGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAA 178
                 L  D VV+     P   L+   +     G            SV  +GD  A
Sbjct: 605 ASIERELECDAVVMVTARLPREELYLDLVARRDAGEIA---------SVRGIGDAWA 652

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 62.5 bits (153), Expect = 5e-11
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 99
           +VIGGG +G+E     V  ++   VT++  E   M  +     P+ A+      + +G++
Sbjct: 173 LVIGGGAVGLELGQ--VYRRLGAEVTLI--EY--MPEILPQGDPETAALLRRALEKEGIR 226

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKGG 156
               T    ++   +G  V +   +G     +  D V+V +G +P T      L LEK G
Sbjct: 227 VRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG----LGLEKAG 282

Query: 157 IKVTGR--------LQSSNSSVYAVGDVAAFP 180
           +KV  R        +++S   VYA+GD A  P
Sbjct: 283 VKVDERGFIRVNARMETSVPGVYAIGDAARPP 314

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 62.1 bits (152), Expect = 7e-11
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 99
           VV+GGGYIG+E        K+   V++V  EA    R+   +  ++ +   E  K  G+ 
Sbjct: 175 VVVGGGYIGLELGI--AYRKLGAQVSVV--EA--RERILPTYDSELTAPVAESLKKLGIA 228

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS---LFEGQLTLEKG 155
              G  +  ++   NG ++A + + G  RL  D V+V +G RP T    L    L +   
Sbjct: 229 LHLGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA 285

Query: 156 GIKVTGRLQSSNSSVYAVGDVAAFP 180
            I +  R Q+S  +V+A+GDVA  P
Sbjct: 286 AIAIDERCQTSMHNVWAIGDVAGEP 310

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 27/152 (17%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 98
           ++IGGG IG+E     V + +   + +V  E   M           +   +++  + +  
Sbjct: 189 LIIGGGIIGLEMGT--VYSTLGSRLDVV--E---MMDGLMQGADRDLVKVWQKQNEYRFD 241

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGG 156
             +  T   + +   +G  V     +  +     D V+V  G  PN  L    ++ EK G
Sbjct: 242 NIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKL----ISAEKAG 297

Query: 157 IKVTGR--------LQSSNSSVYAVGDVAAFP 180
           + VT R        ++++   +YA+GD+   P
Sbjct: 298 VAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 26/151 (17%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGV 98
            VIG G IG+E  +  V  ++   VT++  E       F P    ++A   ++    +G+
Sbjct: 184 GVIGAGVIGLELGS--VWARLGAEVTVL--E---AMDKFLPAVDEQVAKEAQKILTKQGL 236

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFEGQLTLEKGGI 157
           K + G  ++  +V +    V     +G +    D ++V +G RP T      L     G+
Sbjct: 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT---TD-LLAADSGV 292

Query: 158 KVTGR--------LQSSNSSVYAVGDVAAFP 180
            +  R          +S   VYA+GDV    
Sbjct: 293 TLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 24/152 (15%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEA--HCMARLFTPKIASYYEEYYKSKGVKF 100
           VVIG G IG+E  +  V  ++  +VT V  E   H        +I+  ++   + +G KF
Sbjct: 182 VVIGAGVIGVELGS--VWQRLGADVTAV--EFLGHVGGVGIDMEISKNFQRILQKQGFKF 237

Query: 101 VKGTVLSSFDVDSNGKV-VAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKGG 156
              T ++     S+GK+ V++    G +      D+++V IG RP T      L LE+ G
Sbjct: 238 KLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKN----LGLEELG 293

Query: 157 IKVTGR--------LQSSNSSVYAVGDVAAFP 180
           I++  R         Q+   ++YA+GDV A P
Sbjct: 294 IELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 51/228 (22%)

Query: 17  AENVCYLRDLADANRLVNVMKSCSGGNAVV---------------IGGGYIGME--CAAS 59
            +    + +   A +L   ++S  GGN  +                       +  C   
Sbjct: 122 DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGP 181

Query: 60  L---------------VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           +               +++K++VT+  P  +      +P         Y   G+K V   
Sbjct: 182 VFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVASIYNQLGIKLVHNF 239

Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL--EKGGIKVTGR 162
            +         ++V      GN +P D+ ++      N +L      L  + G I     
Sbjct: 240 KIKEIR---EHEIV---DEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLN 293

Query: 163 LQSSN-SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209
           + S    +VYAVGD  +  +  LG          A  + + A   +  
Sbjct: 294 MVSIKYDNVYAVGDANSMTVPKLGY--------LAVMTGRIAAQHLAN 333

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 45  VVIGGGYIGMECAASL---VINKINVTMVFPEAH---------CMARLFTPK-IASYYEE 91
           +V+GG +  +  A +L   V +K +V ++                  +     +     E
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSE 64

Query: 92  YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 148
               KG++F +GTV    D  S+                D V+VGIG    T L +G
Sbjct: 65  ALPEKGIQFQEGTV-EKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 28/152 (18%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 99
           VVIGGGYIG+E             VT++  E      +   F  ++A+  ++  K KGV+
Sbjct: 174 VVIGGGYIGIELGT--AYANFGTKVTIL--EG--AGEILSGFEKQMAAIIKKRLKKKGVE 227

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKGG 156
            V   +      +     V V          +  D V+V +G RPNT      L LE+ G
Sbjct: 228 VVTNALAKG--AEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDE----LGLEQIG 281

Query: 157 IKVTGR--------LQSSNSSVYAVGDVAAFP 180
           IK+T R         ++S  +++A+GD+   P
Sbjct: 282 IKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 36/153 (23%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEA---------HCMARLFTPKIASYYEEYY 93
           VVIGGG IG+E  +  V  ++   VT+V  E            +       +A       
Sbjct: 178 VVIGGGVIGLELGS--VWARLGAEVTVV--EFAPRCAPTLDEDVTNALVGALA------- 226

Query: 94  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLT 151
           K++ +KF+  T +     + +   + V  ++G R  +  + ++V +G RP T    G L 
Sbjct: 227 KNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT---GG-LG 282

Query: 152 LEKGGIKVTGR--------LQSSNSSVYAVGDV 176
           L+K  +    R         ++S   VYA+GDV
Sbjct: 283 LDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 90  EEYYKSKGVKFVKGTVLSSFDVDSNGK-VVAVNLRDGN--RLPTDMVVVGIGIRPNTSLF 146
            + ++   ++ +    L   + D   +  V  + +      L  D V++  G        
Sbjct: 198 MKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPL 257

Query: 147 EG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
               L LEK  IKV   + +S   VYA GD+  +P KL
Sbjct: 258 ANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGKL 295

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 19/147 (12%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
           V IGGG  G    A++ +++   NVT++      M +         Y +  K + + ++ 
Sbjct: 159 VTIGGGNSGAI--AAISMSEYVKNVTII----EYMPKYMCENA---YVQEIKKRNIPYIM 209

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGG 156
              ++    D   KV  V  +D        + TD V + +G+ P TS  +   + L++ G
Sbjct: 210 NAQVTEIVGDGK-KVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERG 268

Query: 157 -IKVTGRLQSSNSSVYAVGDVAAFPLK 182
            I V  R ++S   VYA GDV +    
Sbjct: 269 YIVVDSRQRTSVPGVYAAGDVTSGNFA 295

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
            VIGGG  G+E  A++ +  I  +VT++         +   ++    ++    K V  + 
Sbjct: 148 AVIGGGNSGVE--AAIDLAGIVEHVTLL----EFAPEMKADQVLQ--DKLRSLKNVDIIL 199

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG- 156
               +    D + KVV +  RD        +    + V IG+ PNT+  EG +   + G 
Sbjct: 200 NAQTTEVKGDGS-KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGE 258

Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPLK 182
           I +  + +++   V+A GD    P K
Sbjct: 259 IIIDAKCETNVKGVFAAGDCTTVPYK 284

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 94  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEG 148
            +  V  +   V +   +    K+  + L +        L  D ++V  G   +    + 
Sbjct: 200 HASKVNVLTPFVPAE--LIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKN 257

Query: 149 -QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
             L +EK  I V   ++++    +A GD+  +  K+
Sbjct: 258 WGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKV 293

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 29/134 (21%)

Query: 45  VVIGGGYIGMECAASL---VINKINVTMVFP-EAHCMARLFTP-------------KIAS 87
           V++G G  GM  A  +   + +   VT++   +       F P              IA 
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF----QFVPSNPWVGVGWKERDDIAF 63

Query: 88  YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147
               Y + KG+ F+  +     D ++      + L DGN +  D +++  G +       
Sbjct: 64  PIRHYVERKGIHFIAQSA-EQIDAEAQ----NITLADGNTVHYDYLMIATGPKLAFENVP 118

Query: 148 GQLTLEKGGIKVTG 161
           G    +     V  
Sbjct: 119 G---SDPHEGPVQS 129

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 35/206 (16%)

Query: 5   LKLEEFGLSGSD-----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA-- 57
            KL    + GSD      +++C +     A               +VIG    G  C   
Sbjct: 110 PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQ--ALLREPGPIVIGAM-AGASCFGP 166

Query: 58  ----ASLV------------INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
               A +V            I         P    +             +  K +G++  
Sbjct: 167 AYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAY 226

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLTLEKGG 156
               ++   V+ N   V      G       LP    ++    +   ++   +     GG
Sbjct: 227 TNCKVTK--VEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGG 284

Query: 157 -IKVTGRLQSSN-SSVYAVGDVAAFP 180
            + V    +S   ++++A G   A P
Sbjct: 285 FVLVDEHQRSKKYANIFAAGIAIAIP 310

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 40/152 (26%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMVFPEAH---------CMA-RLF-TPKIASYYEE 91
           VVIGGG   +E    + + K    VT++    H             R F  PK+      
Sbjct: 156 VVIGGGDAAVEEG--MFLTKFADEVTVI----HRRDTLRANKVAQARAFANPKM------ 203

Query: 92  YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLF 146
                  KF+  T +   ++     V  V LR+      + L TD V + IG  PNT+  
Sbjct: 204 -------KFIWDTAVE--EIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFV 254

Query: 147 EGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVA 177
           +  ++L   G + V   + ++   ++A GDV+
Sbjct: 255 KDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVS 286

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 26/154 (16%)

Query: 41  GGNAVVIGGG--YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 98
           G   V++     ++    A  L      VT+V          FT +  +     ++   V
Sbjct: 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHE-LHV 586

Query: 99  KFVKGTVLSSFDVDS---------------NGKVVAVNLRDGNR--LPTDMVVVGIGIRP 141
           + +     S  +                   G  V+    + +   +  D +V+  G   
Sbjct: 587 EELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646

Query: 142 NTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGD 175
             +L+     L+    +     ++    +Y +GD
Sbjct: 647 ECTLWNE---LKARESEWA---ENDIKGIYLIGD 674

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 41  GGNAVVIGGGYIGMECA-ASLVINKINVTMVF--PEAHCMARLFTPKIASYYEEYYKSK- 96
            G  +V+G G    +CA ++L      V +VF     +  A           EE   +K 
Sbjct: 332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP---------EEVELAKE 382

Query: 97  -GVKFVKGTVLSSFDVDSNGKVVAVNLR------DGNR---------LPTDMVVVGIG-I 139
              +F+         +   G++VAV          G           L  D+V+   G +
Sbjct: 383 EKCEFLPFLSPRKV-IVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSV 441

Query: 140 RPNTSLFEGQLTLE---KGGIKVTGR-LQSSNSSVYAVGDVA 177
             +  + E    ++       +V    +Q+S   V+A GD+ 
Sbjct: 442 LRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 16/115 (13%)

Query: 45  VVIGGGYIGMECAASLVI--NKINVTMVFP-EAHC--------MARLFTPKIASYYEEYY 93
           VV+GGG  G   A  + +    I VT++ P   +         +      +   +  +  
Sbjct: 6   VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65

Query: 94  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 148
           ++ G++ V  +  +  D D       V    G     D  VV  GI       EG
Sbjct: 66  RAHGIQVVHDSA-TGIDPDKK----LVKTAGGAEFGYDRCVVAPGIELIYDKIEG 115

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 37/151 (24%)

Query: 45  VVIGGGYIGMECAASLVINKI--NVTMV-----FPEAHCMA-RLF-TPKIASYYEEYYKS 95
            VIGGG   ME A    + +   +VT+V     F  +  M  R     KI          
Sbjct: 159 AVIGGGDSAMEEA--TFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKI---------- 206

Query: 96  KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQL 150
              +F+    +    VD +  V  + +RD N      LP   V V IG  P + L    +
Sbjct: 207 ---RFLTNHTVV--AVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAI 261

Query: 151 TLEKGG-IKVTGRLQSSNSS---VYAVGDVA 177
            ++  G + V GR  ++++S   V+A GD+ 
Sbjct: 262 DVDPDGYVLVQGR--TTSTSLPGVFAAGDLV 290

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 114 NGKVVAVNLRDGN------RLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSN 167
              V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +  + 
Sbjct: 214 QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNA 273

Query: 168 SS-----VYAVGDVA 177
           +      V+A GDV 
Sbjct: 274 TQTSIPGVFAAGDVM 288

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 112 DSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVT-GRLQ 164
                +  + +++        L    +   IG  P T   +G + L+  G +    G  Q
Sbjct: 225 GERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQ 284

Query: 165 SSNSSVYAVGDVA 177
           +S   V+A GDV 
Sbjct: 285 TSVPGVFAAGDVQ 297

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 98  VKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQ-LT 151
           V+FV  +V+   ++  +  V  V + +        L  + V + IG  P T   +   + 
Sbjct: 205 VEFVLNSVVK--EIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIE 262

Query: 152 LEKGG-IKVTGRLQSSNSSVYAVGDV 176
            +  G IKV   +++S   V+A GD 
Sbjct: 263 TDTNGYIKVDEWMRTSVPGVFAAGDC 288

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 114 NGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQLTL------EKGGIKVTGR 162
              V ++++++        L      + +G   N ++ + +         E G I V   
Sbjct: 209 ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS 268

Query: 163 LQSSNSSVYAVGDVA 177
           ++++   ++A GD+ 
Sbjct: 269 MKTNVQGLFAAGDIR 283

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 117 VVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQLTL------EKGGIKVTGRLQSSNS 168
            V V L+DG    L    +   +G+     + +   +       E G + V  ++Q+S +
Sbjct: 218 GVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVA 277

Query: 169 SVYAVGDVA 177
            ++A GD+ 
Sbjct: 278 GLFAAGDLR 286

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 94  KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG----- 148
            ++GV+     +     +  +  VV   L DG  +    +     +R      E      
Sbjct: 185 AARGVRVETTRIRE---IAGHADVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAV 238

Query: 149 QLTLEKGGIKVTGRLQSSNSSVYAVGDVA 177
           +       I      Q++   ++A GDVA
Sbjct: 239 EEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 114 NGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVT-GRLQSS 166
              + A+ +++        LP   +   IG  P T +  GQ+  ++ G IK   G   +S
Sbjct: 239 GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTS 298

Query: 167 NSSVYAVGDVA 177
               +A GDV 
Sbjct: 299 VPGFFAAGDVQ 309

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 65/203 (32%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G D   V    D+      V       G    +IG G IG + A  L     + +   
Sbjct: 472 IDGIDHPKVLSYLDVLRDKAPV-------GNKVAIIGCGGIGFDTAMYLSQPGESTSQNI 524

Query: 72  PE-------------AHCMARLFTPKIASYYEEYY------------------------K 94
                          A  ++        S  +                            
Sbjct: 525 AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLL 584

Query: 95  SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTL 152
           S+GVK + G      D D         + +G    L  D VV+  G  PN +L +     
Sbjct: 585 SRGVKMIPGVSYQKIDDDG-----LHVVINGETQVLAVDNVVICAGQEPNRALAQP---- 635

Query: 153 EKGGIKVTGRLQSSNSSVYAVGD 175
                     L  S  +V+ +G 
Sbjct: 636 ----------LIDSGKTVHLIGG 648

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.95
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.91
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.91
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.91
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.91
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.9
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.9
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.9
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.9
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.9
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.9
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.9
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.89
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.89
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.88
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.88
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.87
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.87
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.86
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.86
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.86
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.86
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.86
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.85
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.85
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.85
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.84
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.84
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.84
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.83
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.83
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.82
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.79
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.79
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.77
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.74
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.74
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.72
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.71
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.7
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.49
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.48
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.31
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.3
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.28
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.11
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.06
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.97
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.95
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.93
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.93
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.92
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.89
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.89
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.89
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.88
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.88
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.87
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.86
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.86
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.85
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.84
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.84
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.83
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.83
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.82
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.81
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.81
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.8
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.8
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.79
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.79
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.79
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.78
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.78
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.77
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.77
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.74
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.74
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.74
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.74
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.72
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.72
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.71
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.71
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.7
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.7
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.7
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.69
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.69
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.69
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.69
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.69
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.68
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.67
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.66
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.66
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.65
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.65
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.62
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.62
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.61
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.6
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.6
3dme_A	369	Conserved exported protein; structural genomics, P	98.59
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.58
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.58
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.57
3atr_A	453	Conserved archaeal protein; saturating double bond	98.57
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.56
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.56
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.55
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.55
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.55
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.54
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.54
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.53
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.53
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.53
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.52
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.51
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.5
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.49
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.48
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.48
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.45
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.45
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.44
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.43
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.42
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.42
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.42
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.42
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.41
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.4
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.4
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.4
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.39
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.39
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.39
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.38
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.37
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.37
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.36
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.36
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.35
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.34
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.32
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.32
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.32
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.31
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.31
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.3
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.3
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.29
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.29
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.28
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.27
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.27
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.26
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.25
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.25
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.24
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.24
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.23
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.23
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.23
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.23
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.22
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.22
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.22
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.22
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.21
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.21
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.2
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.19
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.19
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.18
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.17
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.17
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.17
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.17
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.16
4dna_A	463	Probable glutathione reductase; structural genomic	98.14
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.1
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.1
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.08
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.07
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.07
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.04
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.04
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.02
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.01
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.01
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.97
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.94
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.93
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.9
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.89
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.89
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.85
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.82
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.78
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.75
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.72
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.68
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.62
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.62
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.6
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.52
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.47
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.34
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.26
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.16
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.07
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.99
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.86
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.85
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.75
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.64
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.58
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.48
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.46
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.42
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	96.39
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.38
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.37
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.33
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.33
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	96.29
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	96.26
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	96.15
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	96.13
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.13
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.02
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.98
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.88
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	95.87
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	95.85
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	95.78
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.76
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	95.76
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	95.65
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.61
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.54
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.51
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	95.51
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.48
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.35
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.26
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.13
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	95.01
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.98
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.95
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.94
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	94.75
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.73
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.69
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.42
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.18
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.18
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	94.16
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.13
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	93.97
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	93.83
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.54
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.38
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.28
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	93.17
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	93.03
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.93
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.9
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.81
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.77
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.76
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.54
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.09
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.07
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	92.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	91.9
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	91.8
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.76
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	91.68
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	91.59
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.56
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.55
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.54
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.46
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	91.41
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	91.39
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.39
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.37
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.34
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.31
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.3
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.16
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.1
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.09
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.07
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	90.96
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	90.93
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	90.87
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	90.87
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	90.81
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	90.78
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	90.75
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	90.73
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	90.64
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	90.46
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.44
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.41
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.39
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.38
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.37
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.37
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	90.35
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	90.3
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	90.28
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.26
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	90.21
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.2
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	90.19
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.15
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.14
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	90.13
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	90.12
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.11
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	90.1
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	90.07
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	89.99
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	89.96
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.96
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.96
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	89.66
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.64
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	89.59
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.54
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	89.51
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	89.49
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.49
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	89.42
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	89.41
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	89.41
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	89.34
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	89.34
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.32
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	89.32
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.28
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	89.27
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	89.26
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.18
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.18
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.15
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	89.14
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	89.12
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	89.12
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	89.12
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	89.12
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.06
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	89.06
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	88.99
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.99
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.99
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	88.92
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.89
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.83
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	88.76
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	88.72
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.65
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	88.64
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.64
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	88.61
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.59
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.58
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	88.58
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.55
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	88.54
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	88.5
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	88.41
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	88.35
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	88.32
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.29
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.27
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	88.24
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	88.17
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.17
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	88.14
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	88.1
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	88.04
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	87.98
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	87.97
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	87.93
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	87.93
3l07_A	285	Bifunctional protein fold; structural genomics, ID	87.92
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	87.92
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	87.84
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	87.83
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	87.8
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.79
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	87.77
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	87.75
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	87.75
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	87.74
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	87.7
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	87.7
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	87.7
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	87.68
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	87.68
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	87.68
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	87.67
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	87.66
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	87.65
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	87.62
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.6
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	87.6
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	87.47
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	87.44
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	87.43
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	87.41
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	87.39
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	87.38
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	87.37
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	87.35
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.34
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	87.31
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	87.31
3qha_A	296	Putative oxidoreductase; seattle structural genomi	87.26
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	87.24
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	87.18
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	87.15
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	87.14
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	87.1
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	87.1
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	87.09
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	87.07
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	87.06
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	87.06
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	87.04
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	87.0
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	86.99
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	86.95
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	86.87
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	86.86
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	86.84
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	86.83
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	86.83

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=9.8e-48  Score=378.93  Aligned_cols=301  Identities=17%  Similarity=0.295  Sum_probs=258.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||   +++|++++++|+..+++.+...++++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       115 ~p~~p~i~g---~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~  190 (437)
T 4eqs_A          115 SANSLGFES---DITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADM  190 (437)
T ss_dssp             EECCCCCCC---TTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGG
T ss_pred             ccccccccC---ceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchh
Confidence            455555665   57999999999999998877667899999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  163 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~  163 (358)
                      ++.+.+.++++||+++++++|++++.  +    .+.+++|+++++|.|++++|++||+++++.. +.. ++|+|.||++|
T Consensus       191 ~~~~~~~l~~~gV~i~~~~~v~~~~~--~----~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~  264 (437)
T 4eqs_A          191 NQPILDELDKREIPYRLNEEINAING--N----EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKF  264 (437)
T ss_dssp             GHHHHHHHHHTTCCEEESCCEEEEET--T----EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTC
T ss_pred             HHHHHHHhhccceEEEeccEEEEecC--C----eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCc
Confidence            99999999999999999999999863  2    4778899999999999999999999988754 666 67899999999


Q ss_pred             cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEE
Q 018320          164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH  243 (358)
Q Consensus       164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  243 (358)
                      |||+|+|||+|||+..+...++.+.+.+++..|.+||+++|+||+|.......+.++..+..++++.++++|+++.++..
T Consensus       265 ~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~  344 (437)
T 4eqs_A          265 ETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQ  344 (437)
T ss_dssp             BCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGG
T ss_pred             cCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHh
Confidence            99999999999999999988898888999999999999999999997653445667777888999999999999875421


Q ss_pred             -------E--ccC------CCCceEEEEe--eCCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcccHHHHhhcCCcccCC
Q 018320          244 -------Y--GNF------SGTTFGAYWV--NKGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFALA  304 (358)
Q Consensus       244 -------~--g~~------~~~~~~~~~~--~~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~  304 (358)
                             .  ...      +..+|.|+..  ++++|||+|++|++ +. .++.++.||++++|++||.+++   ++|+|+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~yhP~  421 (437)
T 4eqs_A          345 FDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAFAPP  421 (437)
T ss_dssp             SCEEEEEEEEESSCTTSSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCC---CCCCTT
T ss_pred             CCceEEEEecCCchhhcCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCc---cccCCC
Confidence                   1  111      1123666555  58999999999985 54 4678899999999999999999   999999


Q ss_pred             cCCCCCCCCcccccc
Q 018320          305 VSQKPLPSTPVDGKT  319 (358)
Q Consensus       305 ~~~~~~~~~~~~~~~  319 (358)
                      |+++.+++++.+++|
T Consensus       422 ~s~~~d~v~~aa~~A  436 (437)
T 4eqs_A          422 YSHPKDLINMIGYKA  436 (437)
T ss_dssp             TCCSSCHHHHHHHTT
T ss_pred             CCchHHHHHHHHHhc
Confidence            999999888877653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=1.6e-45  Score=366.27  Aligned_cols=317  Identities=21%  Similarity=0.249  Sum_probs=260.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccCccCCHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|..+++||.+.++++++++.+++..+++.+....+++++|||+|++|+|+|..|++. |.+||++++.++++++.++++
T Consensus       124 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~  203 (472)
T 3iwa_A          124 KANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKS  203 (472)
T ss_dssp             EECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHH
T ss_pred             CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHH
Confidence            4666678998888999999999999998877654689999999999999999999999 999999999999998558999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEecc
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGR  162 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~  162 (358)
                      +.+.+.+.+++.||+++++++|++++. +++.+. +.+.+|+++++|.||+|+|++|++++++.. +.. ++|+|.||++
T Consensus       204 ~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~-v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~  281 (472)
T 3iwa_A          204 LSQMLRHDLEKNDVVVHTGEKVVRLEG-ENGKVA-RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTR  281 (472)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEE-EEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTT
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEc-cCCeEE-EEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCC
Confidence            999999999999999999999999986 345543 777889999999999999999999887643 665 6789999999


Q ss_pred             ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018320          163 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  242 (358)
Q Consensus       163 ~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  242 (358)
                      ++|+.|+|||+|||+..+...+|.+.+.+++..|..||+.||+||+|... .....+|++++.+|++.++++|+++.++.
T Consensus       282 ~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~a~vG~~e~~a~  360 (472)
T 3iwa_A          282 MRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDA-TFPGAVGSWAVKLFEGSASGAGLTVEGAL  360 (472)
T ss_dssp             CBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEECSSCEEEEEECCHHHHH
T ss_pred             cccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCc-cCCCCCcceEEEECCceeEEEECCHHHHH
Confidence            99999999999999998887778777778889999999999999998764 34456788899999999999999876421


Q ss_pred             ---------EEcc--------CCCCceEEEEe--eCCeEEEEEEeCC--C--HHHHHHHHHHHHcCCCcccHHHHhhcCC
Q 018320          243 ---------HYGN--------FSGTTFGAYWV--NKGRLVGSFLEGG--T--KEEYEAIAKATRLQPVVEDLAELETQGL  299 (358)
Q Consensus       243 ---------~~g~--------~~~~~~~~~~~--~~g~ilGa~~vg~--~--~~~~~~~a~ai~~~~~~~dl~~l~~~~~  299 (358)
                               ....        .+..+|.|+..  ++|+|||+|++|+  +  .+.++.++.||++++|++||.+++   +
T Consensus       361 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~---~  437 (472)
T 3iwa_A          361 REGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAE---V  437 (472)
T ss_dssp             HTTCCEEEEEEEC-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCC---C
T ss_pred             HcCCceEEEEEecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhccc---c
Confidence                     1111        11124667665  5899999999998  3  345788999999999999999988   9


Q ss_pred             cccCCcCCCCCCCCccccccccccccCcc
Q 018320          300 GFALAVSQKPLPSTPVDGKTVPGLVLGKS  328 (358)
Q Consensus       300 ~yap~~~~~~~~~~~~~~~~~n~~~~~~~  328 (358)
                      .|+|+|+++.++.+..++.+.|.++|+.-
T Consensus       438 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~  466 (472)
T 3iwa_A          438 VYSPPFASAMDIVNVAGNVADNVLAGREG  466 (472)
T ss_dssp             C--------CCHHHHHHHHHHHHHC----
T ss_pred             cCCCCCCCcccHHHHHHHHHHHhhcCccc
Confidence            99999999999999999999999999653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=1.1e-44  Score=367.62  Aligned_cols=327  Identities=23%  Similarity=0.300  Sum_probs=279.1

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.+++++++++.++..+.+.+....+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       116 ~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  194 (565)
T 3ntd_A          116 APIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREM  194 (565)
T ss_dssp             EECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHH
T ss_pred             CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHH
Confidence            56667899998899999999999999988776667899999999999999999999999999999999999995 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEc------------------CCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVD------------------SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~------------------~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                      .+.+.+.+++.||++++++.+++++.+                  +++.+ .+.+.+|+++++|.||+|+|++|++++++
T Consensus       195 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  273 (565)
T 3ntd_A          195 AGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLAR  273 (565)
T ss_dssp             HHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHH
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHH
Confidence            999999999999999999999999863                  23433 46678899999999999999999998876


Q ss_pred             cc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEE
Q 018320          148 GQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSR  225 (358)
Q Consensus       148 ~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~  225 (358)
                      .. +.+ ++|+|.||++++|+.|+|||+|||+..+...+|.+.+.+++..|..||+.||+||+|... ......++.++.
T Consensus       274 ~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~  352 (565)
T 3ntd_A          274 DAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREE-RYQGTQGTAICK  352 (565)
T ss_dssp             HHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEE
T ss_pred             hCCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCc-cCCCcccceEEE
Confidence            43 665 678999999999999999999999998887778777778999999999999999998764 222345667788


Q ss_pred             ecCceEEEeecccceEE---------EEcc--------CCCCceEEEEe--eCCeEEEEEEeCCCH--HHHHHHHHHHHc
Q 018320          226 VFTLSWQFYGDNVGEVV---------HYGN--------FSGTTFGAYWV--NKGRLVGSFLEGGTK--EEYEAIAKATRL  284 (358)
Q Consensus       226 ~~~~~~~~~G~~~~~~~---------~~g~--------~~~~~~~~~~~--~~g~ilGa~~vg~~~--~~~~~~a~ai~~  284 (358)
                      +|++.++++|+++.++.         ....        ....+|.|+..  ++|+|||+|++|+++  +.++.++.||++
T Consensus       353 ~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~  432 (565)
T 3ntd_A          353 VFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRA  432 (565)
T ss_dssp             ETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHT
T ss_pred             EcCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHc
Confidence            99999999999876521         1111        01123667666  689999999999886  457889999999


Q ss_pred             CCCcccHHHHhhcCCcccCCcCCCCCCCCccccccccccccCccccchhhhhhH
Q 018320          285 QPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGV  338 (358)
Q Consensus       285 ~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  338 (358)
                      ++|++||.+++   +.|+|+|++..++.+..++.+.|.+.+..+.|+++|+.+.
T Consensus       433 ~~~~~~l~~~~---~~~~P~~~~~~~~i~~aa~~~~~~~~~~~~~i~~~~~~~~  483 (565)
T 3ntd_A          433 GMTVEQLQHLE---LSYAPPYGSAKDVINQAAFVASNIIKGDATPIHFDQIDNL  483 (565)
T ss_dssp             TCBHHHHTTCC---CCCCTTTCCSSCHHHHHHHHHHHHHHTSCCEECTTTTTSC
T ss_pred             CCCHHHHhhhh---hccCcccCchhhhhhhhhhhhhhccccccceeeHHHHHhC
Confidence            99999999988   9999999999999998888889999999999999988653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=3.4e-44  Score=366.07  Aligned_cols=326  Identities=24%  Similarity=0.311  Sum_probs=280.5

Q ss_pred             CCccCCCCCC-CCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            6 KLEEFGLSGS-DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~~ipG~-~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|..+++||. +.+++++.+++.++.++...+....+++++|||+|++|+|+|..|++.|.+||++++.+++++. ++++
T Consensus       151 ~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~  229 (588)
T 3ics_A          151 KPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYE  229 (588)
T ss_dssp             EECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHH
T ss_pred             CCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHH
Confidence            4556678998 7889999999999999988776556899999999999999999999999999999999999997 8999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEecc
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGR  162 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~  162 (358)
                      +.+.+.+.|++.||++++++.|++++.++ +   .+.+.+|+++++|.||+|+|++|++++++.. +.. ++|+|.||++
T Consensus       230 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~  305 (588)
T 3ics_A          230 MAAYVHEHMKNHDVELVFEDGVDALEENG-A---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEK  305 (588)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEGGG-T---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTT
T ss_pred             HHHHHHHHHHHcCCEEEECCeEEEEecCC-C---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCc
Confidence            99999999999999999999999997532 2   3677899999999999999999999887654 665 6789999999


Q ss_pred             ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320          163 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  241 (358)
Q Consensus       163 ~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  241 (358)
                      ++|+.|+|||+|||+..+...+|.+.+.+++..|..||+.||+||+| ... .....+|+.+..+|++.++++|+++.++
T Consensus       306 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~~a~vGlte~~a  384 (588)
T 3ics_A          306 FQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS-LYKGTLGTSVAKVFDLTVATTGLNEKIL  384 (588)
T ss_dssp             SBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSS-CCCCBCCCEEEEETTEEEEEEECCHHHH
T ss_pred             cccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCcc-ccCCcccceEEEECCeEEEEecCCHHHH
Confidence            99999999999999998877778777778999999999999999998 443 3445678888889999999999988643


Q ss_pred             EE---------Ec--cC------CCCceEEEEe--eCCeEEEEEEeCCC-H-HHHHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320          242 VH---------YG--NF------SGTTFGAYWV--NKGRLVGSFLEGGT-K-EEYEAIAKATRLQPVVEDLAELETQGLG  300 (358)
Q Consensus       242 ~~---------~g--~~------~~~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~  300 (358)
                      ..         ..  ..      ...+|.|+..  ++|+|||+|++|+. + +.++.++.||++++|++||.+++   +.
T Consensus       385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~---~~  461 (588)
T 3ics_A          385 KRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLE---LS  461 (588)
T ss_dssp             HHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCC---CC
T ss_pred             HHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhh---hc
Confidence            21         11  10      1123667665  58999999999974 4 45788999999999999999999   99


Q ss_pred             ccCCcCCCCCCCCccccccccccccCccccchhhhhhHHH
Q 018320          301 FALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVIL  340 (358)
Q Consensus       301 yap~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~  340 (358)
                      |+|+|++..++.+.+++.+.|.+.+..+.|+++|+.+.+.
T Consensus       462 ~~P~~~~~~d~i~~aa~~a~n~~~~~~~~i~~~~~~~~~~  501 (588)
T 3ics_A          462 YAPPYSSAKDPVNMVGYAASNIVDGFVDTVQWHEIDRIVE  501 (588)
T ss_dssp             CSTTTCCSSCHHHHHHHHHHHHHTTSCCEECTTTHHHHHH
T ss_pred             cCCCcccccchhhhcccccccccccccceecHHHHHHHhc
Confidence            9999999999999998889999999999999999987764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.4e-43  Score=346.66  Aligned_cols=305  Identities=21%  Similarity=0.240  Sum_probs=256.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.+++++.++.+++..+.+.+...++++++|||+|++|+|+|..|++.|.+||++++.+++++..+++++
T Consensus       113 ~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  192 (449)
T 3kd9_A          113 SPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEV  192 (449)
T ss_dssp             EECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHH
T ss_pred             CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHH
Confidence            45666789998899999999999999988886556899999999999999999999999999999999999987689999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  163 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~  163 (358)
                      .+.+.+.+++. |++++++.+++++.+  +.+..+ +.+++++++|.|++|+|++|++++++.. +.. ++|+|.||+++
T Consensus       193 ~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~  268 (449)
T 3kd9_A          193 TDILEEKLKKH-VNLRLQEITMKIEGE--ERVEKV-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKM  268 (449)
T ss_dssp             HHHHHHHHTTT-SEEEESCCEEEEECS--SSCCEE-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTC
T ss_pred             HHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEEE-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCC
Confidence            99999999999 999999999999853  233233 4577899999999999999999987654 666 67889999999


Q ss_pred             cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEE
Q 018320          164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH  243 (358)
Q Consensus       164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  243 (358)
                      +|+.|+|||+|||+..+...+|.+.+.+++..|..||+.+|.||+|... ......|+.++.++++.++++|+++.++..
T Consensus       269 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~  347 (449)
T 3kd9_A          269 QTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKEL-HFPGVLGTAVTKFMDVEIGKTGLTEMEALK  347 (449)
T ss_dssp             BCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHH
T ss_pred             ccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCc-cCCCcccceEEEEcCcEEEEecCCHHHHHH
Confidence            9999999999999998887778777778999999999999999998764 233456888999999999999998764311


Q ss_pred             Ec-----------c------CCCCceEEEEe--eCCeEEEEEEeCCCHH-HHHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320          244 YG-----------N------FSGTTFGAYWV--NKGRLVGSFLEGGTKE-EYEAIAKATRLQPVVEDLAELETQGLGFAL  303 (358)
Q Consensus       244 ~g-----------~------~~~~~~~~~~~--~~g~ilGa~~vg~~~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  303 (358)
                      .|           +      ....+|.|+..  ++|+|||+|++|+.+. .++.++.||++++|++||.+++   +.|+|
T Consensus       348 ~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~p  424 (449)
T 3kd9_A          348 EGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTD---LAYAP  424 (449)
T ss_dssp             TTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCC---CCCBT
T ss_pred             CCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcc---cccCC
Confidence            10           0      01123777665  4699999999998755 4678899999999999999988   99999


Q ss_pred             CcCCCCCCCCccccc
Q 018320          304 AVSQKPLPSTPVDGK  318 (358)
Q Consensus       304 ~~~~~~~~~~~~~~~  318 (358)
                      +|++..++.+..++.
T Consensus       425 ~~~~~~~~~~~~~~~  439 (449)
T 3kd9_A          425 PFAPVWDPLIVLARV  439 (449)
T ss_dssp             TTBCSSCHHHHHHHH
T ss_pred             CCCCchhHHHHHHHH
Confidence            999999888776643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=8.4e-43  Score=344.91  Aligned_cols=310  Identities=18%  Similarity=0.295  Sum_probs=256.3

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.++++++++++++.++.+...  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++
T Consensus       116 ~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  193 (452)
T 2cdu_A          116 KPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAP--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEF  193 (452)
T ss_dssp             EECCCCCTTTTSTTEEECSSHHHHHHHHHHGG--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHH
T ss_pred             CcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhc--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhH
Confidence            45566789988789999999999999988775  5899999999999999999999999999999999999986699999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~~~  164 (358)
                      .+.+.+.++++||+++++++|++++. +++++..+.+ +|+++++|.||+|+|++|++++++..+.+ ++|+|.||++||
T Consensus       194 ~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~  271 (452)
T 2cdu_A          194 TDILAKDYEAHGVNLVLGSKVAAFEE-VDDEIITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMH  271 (452)
T ss_dssp             HHHHHHHHHHTTCEEEESSCEEEEEE-ETTEEEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSB
T ss_pred             HHHHHHHHHHCCCEEEcCCeeEEEEc-CCCeEEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcC
Confidence            99999999999999999999999985 3455555655 78899999999999999999987665555 578899999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEE-
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH-  243 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~-  243 (358)
                      |+.|+|||+|||+..+...+|.+.+++++..|..||+.||.||++... ......|++++.+|++.++++|+++.++.. 
T Consensus       272 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~  350 (452)
T 2cdu_A          272 SSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKV-KDMGTQSSSGLKLYGRTYVSTGINTALAKAN  350 (452)
T ss_dssp             CSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHT
T ss_pred             cCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCC-cCCCccceEEEEECCeeeEeecCCHHHHHHc
Confidence            999999999999998776667666678899999999999999998642 234456788899999999999988754311 


Q ss_pred             --------Ecc--------CCCCceEEEEe--eCCeEEEEEEeCC-CHH-HHHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320          244 --------YGN--------FSGTTFGAYWV--NKGRLVGSFLEGG-TKE-EYEAIAKATRLQPVVEDLAELETQGLGFAL  303 (358)
Q Consensus       244 --------~g~--------~~~~~~~~~~~--~~g~ilGa~~vg~-~~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  303 (358)
                              +.+        ....+|.+++.  ++|+|+|+|++|+ +.. .++.++.||++++|++||.+++   +.|+|
T Consensus       351 g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~---~~~~P  427 (452)
T 2cdu_A          351 NLKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVD---MLFQP  427 (452)
T ss_dssp             TCCCEEEEEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSC---CCCCT
T ss_pred             CCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhh---hccCC
Confidence                    111        01123666665  4799999999998 554 4678899999999999998776   78999


Q ss_pred             CcCCCCCCCCcccccccccc
Q 018320          304 AVSQKPLPSTPVDGKTVPGL  323 (358)
Q Consensus       304 ~~~~~~~~~~~~~~~~~n~~  323 (358)
                      ++++...+.+..++.+.|.+
T Consensus       428 t~~e~~~~~~~aa~~~~~~~  447 (452)
T 2cdu_A          428 QFDRPFNYLNILGQAAQAQA  447 (452)
T ss_dssp             TTCCSSCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhh
Confidence            99998776666665444433

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=4.6e-43  Score=346.89  Aligned_cols=305  Identities=16%  Similarity=0.188  Sum_probs=251.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.+++++.++++++.++.+...  .+++++|||+|++|+|+|..|++.|.+||++++.+++++..+|+++
T Consensus       114 ~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~  191 (452)
T 3oc4_A          114 SQFSTQIRGSQTEKLLKYKFLSGALAAVPLLE--NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEM  191 (452)
T ss_dssp             CBCCCCCBTTTCTTEEEGGGCC----CCHHHH--TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHH
T ss_pred             ccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHh--cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHH
Confidence            56666799998899999999988888776665  5799999999999999999999999999999999999987789999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~~~  164 (358)
                      .+.+.+.++++||++++++.|++++. +++.+ .+.+.++ ++++|.||+|+|++|++++++..+.+ ++|+|.||++||
T Consensus       192 ~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~  268 (452)
T 3oc4_A          192 VAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VLETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQ  268 (452)
T ss_dssp             HHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EEEESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCB
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EEEECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCcc
Confidence            99999999999999999999999986 34455 6777766 89999999999999999988765555 678999999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY  244 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  244 (358)
                      |+.|+|||+|||+..+...++.+.+.+++..|..||+.||.||++.... .....+...+.+|+..++++|+++.++...
T Consensus       269 t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~a~vG~te~~a~~~  347 (452)
T 3oc4_A          269 TSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHR-FIGSLRTMGTKVGDYYLASTGLTETEGLFF  347 (452)
T ss_dssp             CSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCC-CCCCCCCEEEEETTEEEEEEECCSGGGGGS
T ss_pred             CCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCcc-CCCccccEEEEEcCeeEEEecCCHHHHHHC
Confidence            9999999999999987766677666788999999999999999986532 222345566788999999999988653211


Q ss_pred             c---------c------CCCCceEEEEe--eCCeEEEEEEeCC-CH-HHHHHHHHHHHcCCCcccHHHHhhcCCcccCCc
Q 018320          245 G---------N------FSGTTFGAYWV--NKGRLVGSFLEGG-TK-EEYEAIAKATRLQPVVEDLAELETQGLGFALAV  305 (358)
Q Consensus       245 g---------~------~~~~~~~~~~~--~~g~ilGa~~vg~-~~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~  305 (358)
                      |         .      ....+|.|+..  ++|+|||+|++|+ ++ +.++.++.||++++|++||.+++   +.|+|+|
T Consensus       348 g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~  424 (452)
T 3oc4_A          348 PQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKD---YFYQPSL  424 (452)
T ss_dssp             SSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCC---CCCCTTT
T ss_pred             CCceEEEEEecCCccCCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhH---hccCCCC
Confidence            1         0      01224777665  4699999999998 54 45788999999999999999887   8899999


Q ss_pred             CCCCCCCCcccccc
Q 018320          306 SQKPLPSTPVDGKT  319 (358)
Q Consensus       306 ~~~~~~~~~~~~~~  319 (358)
                      +++.++.+..+..+
T Consensus       425 ~~~~~~~~~a~~~~  438 (452)
T 3oc4_A          425 TNIYDITNLMGASA  438 (452)
T ss_dssp             SCSSCHHHHHHHHH
T ss_pred             CCchhHHHHHHHHH
Confidence            99988887776443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=100.00  E-value=2e-42  Score=345.71  Aligned_cols=308  Identities=19%  Similarity=0.241  Sum_probs=253.0

Q ss_pred             CCccCCCCCCC-----------CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320            6 KLEEFGLSGSD-----------AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus         6 ~P~~~~ipG~~-----------~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|..+++||.+           .++++++++++++.++.+.+....+++++|||||++|+|+|..|+++|.+||++++.+
T Consensus       148 ~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~  227 (490)
T 2bc0_A          148 QPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD  227 (490)
T ss_dssp             EECCCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CcCCCCCCCccccccccccccccCCEEEeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence            45556688887           6789999999999999887743468999999999999999999999999999999999


Q ss_pred             cccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-c
Q 018320           75 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-E  153 (358)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~  153 (358)
                      +++++.+++++.+.+.+.|++.||+++++++|++++.  ++.+..+.+ +|+++++|.||+|+|++|++++++..+.. +
T Consensus       228 ~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~~l~~~~  304 (490)
T 2bc0_A          228 TCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNGKIDLFR  304 (490)
T ss_dssp             STTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTTCSCBCT
T ss_pred             chhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHhhhccCC
Confidence            9998669999999999999999999999999999985  344333444 67899999999999999999987765555 5


Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEE
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQF  233 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~  233 (358)
                      +|+|.||+++||+.|+|||+|||+..+...++.+.+++++..|..||+.||.||++... ......+++++.+|++.+++
T Consensus       305 ~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~  383 (490)
T 2bc0_A          305 NGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDL-EGIGVQGSNGISIYGLHMVS  383 (490)
T ss_dssp             TSCBCCCTTCBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEE
T ss_pred             CCCEEECCCcccCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcCCCC-CCCCcccceEEEECCcEeEE
Confidence            78899999999999999999999998766666666678899999999999999998642 23345677888999999999


Q ss_pred             eecccceEE------E---Ec---c----C--CCCceEEEEe--eCCeEEEEEEeCC-CHH-HHHHHHHHHHcCCCcccH
Q 018320          234 YGDNVGEVV------H---YG---N----F--SGTTFGAYWV--NKGRLVGSFLEGG-TKE-EYEAIAKATRLQPVVEDL  291 (358)
Q Consensus       234 ~G~~~~~~~------~---~g---~----~--~~~~~~~~~~--~~g~ilGa~~vg~-~~~-~~~~~a~ai~~~~~~~dl  291 (358)
                      +|+++.++.      .   +.   .    .  ...+|.|++.  ++|+|+|++++|+ +.. .++.++.||++++|++||
T Consensus       384 vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l  463 (490)
T 2bc0_A          384 TGLTLEKAKRLGFDAAVTEYTDNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKL  463 (490)
T ss_dssp             EECCHHHHHHTTCCEEEEEEEEESSCTTCCSSCCEEEEEEEEETTTCBEEEEEEEESSCCTTHHHHHHHHHHHTCBHHHH
T ss_pred             eeCCHHHHHHcCCceEEEEEecCCcccccCCCCceEEEEEEEECCCCEEEEEEEEcCcCHHHHHHHHHHHHHcCCCHHHH
Confidence            998874321      1   11   1    0  1123666655  4799999999998 544 568899999999999999


Q ss_pred             HHHhhcCCcccCCcCCCCCCCCccccccc
Q 018320          292 AELETQGLGFALAVSQKPLPSTPVDGKTV  320 (358)
Q Consensus       292 ~~l~~~~~~yap~~~~~~~~~~~~~~~~~  320 (358)
                      .+++   +.|+|+++++.++.+..++.+.
T Consensus       464 ~~~~---~~~~Pt~~e~~~~~~~~~~~~~  489 (490)
T 2bc0_A          464 ALTD---IFFLPHFNKPYNYITMAALGAK  489 (490)
T ss_dssp             HHSC---CCCCTTTCCTTCHHHHHHHTCC
T ss_pred             hhcc---eecCCCCCchhHHHHHHHHHhh
Confidence            8776   7899999999777666664443

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.6e-40  Score=325.02  Aligned_cols=287  Identities=28%  Similarity=0.447  Sum_probs=252.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+.++++++++.+|+.++...+.. .+++++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++
T Consensus       118 ~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~  196 (415)
T 3lxd_A          118 DPRRLSCVGADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEAL  196 (415)
T ss_dssp             ECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHT-TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHH
T ss_pred             ccCCCCCCCccccCEEEEcCHHHHHHHHHHhhh-cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHH
Confidence            466677899988999999999999999887762 2799999999999999999999999999999999999998789999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      .+.+.+.++++||++++++.|++++. +++++..+++.+|+++++|.||+|+|++|++++++.. +..+ ++|.||++++
T Consensus       197 ~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~  274 (415)
T 3lxd_A          197 SEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCR  274 (415)
T ss_dssp             HHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCB
T ss_pred             HHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCCC
Confidence            99999999999999999999999987 5567778999999999999999999999999987654 5555 4599999999


Q ss_pred             CCCCcEEEEccccccccccc-CcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc--eE
Q 018320          165 SSNSSVYAVGDVAAFPLKLL-GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EV  241 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~-g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~  241 (358)
                      |+.|+|||+|||+..+.+.+ |.+.++++|..|..||+.||.||+|..  .++..+|+||+++|++.++++|.+.+  +.
T Consensus       275 t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  352 (415)
T 3lxd_A          275 TSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP--VPYKATPWFWSNQYDLKLQTVGLSTGHDNA  352 (415)
T ss_dssp             CSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCSEE
T ss_pred             cCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC--CCCCCCCeeEeeeCCcEEEEEeCCCCCCEE
Confidence            99999999999999988777 888889999999999999999999976  47888999999999999999998653  56


Q ss_pred             EEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCC
Q 018320          242 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL  299 (358)
Q Consensus       242 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~  299 (358)
                      +..++.....|.++++++|+|+|+.++|. ......+..+|+.+.+++ ..+|.++.+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~  408 (415)
T 3lxd_A          353 VLRGDPATRSFSVVYLKGGKVVALDCVNM-VKDYVQGKKLVEARAQIA-PEQLADAGV  408 (415)
T ss_dssp             EEEEEGGGTEEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHHTCCCC-HHHHTCTTS
T ss_pred             EEEecCCCCeEEEEEEECCEEEEEEEECC-hHHHHHHHHHHHCCCCCC-HHHhcCCCC
Confidence            66777666679999999999999999994 667777888999988775 455554333

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=2.5e-40  Score=322.62  Aligned_cols=285  Identities=29%  Similarity=0.438  Sum_probs=251.7

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+.++++++++.+++..+...+.  .+++++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++
T Consensus       109 ~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~  186 (404)
T 3fg2_P          109 RNRMLDVPNASLPDVLYLRTLDESEVLRQRMP--DKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEI  186 (404)
T ss_dssp             EECCCCSTTTTSTTEECCSSHHHHHHHHHHGG--GCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHH
T ss_pred             CccCCCCCCCCCCcEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHH
Confidence            46667799998899999999999999988876  5799999999999999999999999999999999999988789999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      .+.+.+.+++.||++++++.|++++. +++.+..+++.+|+++++|.||+|+|++|++++++.. +..++| |.||++++
T Consensus       187 ~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~~~  264 (404)
T 3fg2_P          187 SSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQLL  264 (404)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTTSB
T ss_pred             HHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCCcc
Confidence            99999999999999999999999986 4566778999999999999999999999999987654 555544 99999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc--ceEE
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV--GEVV  242 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~--~~~~  242 (358)
                      |+.|+|||+|||+..+.+.+|.+.+++++..|..||+.||.+|+|..  .++..+|++|+.+|++.++++|.+.  .+.+
T Consensus       265 t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  342 (404)
T 3fg2_P          265 TSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA--KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVV  342 (404)
T ss_dssp             CSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCCEEE
T ss_pred             cCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC--CCCCCCCceEeEECCcEEEEEeCCCCCCEEE
Confidence            99999999999999988778888888999999999999999999876  5788899999999999999999865  3566


Q ss_pred             EEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcC
Q 018320          243 HYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQG  298 (358)
Q Consensus       243 ~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~  298 (358)
                      ..++.....|.++++++|+|+|+.++| .......+..+|+.+..++ ..+|.++.
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l~~~~  396 (404)
T 3fg2_P          343 IRGSVAERSFSAFCYKAGKLIGIESVN-RAADHVFGRKILPLDKSVT-PEQAADLS  396 (404)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHTTTTCCCC-HHHHHCTT
T ss_pred             EEecCCCCcEEEEEEECCEEEEEEEeC-CHHHHHHHHHHHHcCCCCC-HHHhcCCC
Confidence            677776667999999999999999999 4667777888999888775 45555433

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=1.3e-40  Score=325.35  Aligned_cols=286  Identities=23%  Similarity=0.346  Sum_probs=248.9

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+.++++++++.+|+.++++.+.  .+++++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++
T Consensus       110 ~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~  187 (410)
T 3ef6_A          110 RARTMALPGSQLPGVVTLRTYGDVQVLRDSWT--SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRI  187 (410)
T ss_dssp             EECCCCCTTTTSTTEECCCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHH
T ss_pred             cccCCCCCCccccceEEeccHHHHHHHHHHhc--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHH
Confidence            36667799998899999999999999988765  5899999999999999999999999999999999999887789999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      .+.+.+.++++||++++++.|++++.  ++.+..+++.+|+++++|.||+|+|++|++++++.. +..+ ++|.||++++
T Consensus       188 ~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~  264 (410)
T 3ef6_A          188 GAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGA  264 (410)
T ss_dssp             HHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSB
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCee
Confidence            99999999999999999999999985  334557889999999999999999999999987654 5555 5599999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc--eEE
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVV  242 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~  242 (358)
                      |+.|+|||+|||+..+... |.+.+++++..|..||+.||.+|+|..  .++..+|++|+++|++.++++|.+++  +.+
T Consensus       265 t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  341 (410)
T 3ef6_A          265 TLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAVAAAILGKN--VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFV  341 (410)
T ss_dssp             CSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHHHHHHTTCC--CCCCBCCEEEEEETTEEEEEESCSSSSSEEE
T ss_pred             ECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHHHHHHcCCC--CCCCCCCeeEEEECCceEEEEcCCCCCCEEE
Confidence            9999999999999988765 777788899999999999999999976  57888999999999999999998764  667


Q ss_pred             EEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCcc
Q 018320          243 HYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGF  301 (358)
Q Consensus       243 ~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~y  301 (358)
                      ..++.+...|.+++.++|+|+|+.++|. ..+...+..+|+.+..++ ..+|.++.+.+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~i~~~~~~~-~~~l~~~~~~l  398 (410)
T 3ef6_A          342 SRGMPGSGAALLFRLQERRIQAVVAVDA-PRDFALATRLVEARAAIE-PARLADLSNSM  398 (410)
T ss_dssp             EESCTTSSSEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHHTCBCC-HHHHHCTTSCG
T ss_pred             EEeeCCCCeEEEEEEECCEEEEEEEECC-hHHHHHHHHHHhCCCCCC-HHHhcCCCCCH
Confidence            7777776679999999999999999994 666777888999888775 45565444443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=1.7e-39  Score=317.35  Aligned_cols=277  Identities=27%  Similarity=0.411  Sum_probs=236.9

Q ss_pred             CCccCCC-CCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            6 KLEEFGL-SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~~i-pG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|..+++ ||.+ ++++++++.+|+.++++.+.  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.++++
T Consensus       112 ~~~~~~i~~G~~-~~v~~~~~~~~~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~  188 (408)
T 2gqw_A          112 APRALPTLQGAT-MPVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPAT  188 (408)
T ss_dssp             EECCCGGGTTCS-SCEEECCSHHHHHHHHTTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHH
T ss_pred             CCCCCCccCCCC-CcEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHH
Confidence            4555667 8887 89999999999998876654  479999999999999999999999999999999999998768999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEeccc
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRL  163 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~  163 (358)
                      +.+.+.+.++++||+++++++|++++ +  +   .+++.+|+++++|.||+|+|++|++++++.. +..++| |.||+++
T Consensus       189 ~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~~~  261 (408)
T 2gqw_A          189 LADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDAYG  261 (408)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCTTC
T ss_pred             HHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECCCC
Confidence            99999999999999999999999997 2  3   4677899999999999999999999887654 555544 9999999


Q ss_pred             cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec-ccceEE
Q 018320          164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD-NVGEVV  242 (358)
Q Consensus       164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~-~~~~~~  242 (358)
                      ||+.|+|||+|||+..+.+.+|.+.+++++..|..||+.||.||++... .++..+|++|+++|++.++++|. ...+.+
T Consensus       262 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  340 (408)
T 2gqw_A          262 RTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA-PGYAELPWYWSDQGALRIQVAGLASGDEEI  340 (408)
T ss_dssp             BCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS-CCCCCCCEEEEEETTEEEEEEECSCCSEEE
T ss_pred             ccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC-CcCCCCCeEEEEECCceEEEECCCCCCEEE
Confidence            9999999999999998877677777778999999999999999998753 26778999999999999999998 223455


Q ss_pred             EEccCC--CCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHh
Q 018320          243 HYGNFS--GTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       243 ~~g~~~--~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      ..++..  ..+|.+++.++|+|+|++++|. ..++..+..+|+.+.+++. .+|.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~-~~~~~~~~~~i~~~~~~~~-~~l~  393 (408)
T 2gqw_A          341 VRGEVSLDAPKFTLIELQKGRIVGATCVNN-ARDFAPLRRLLAVGAKPDR-AALA  393 (408)
T ss_dssp             EESCCCSSSCCEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHTTCCCCH-HHHH
T ss_pred             EEccCCCCCCeEEEEEEeCCEEEEEEEECC-hHHHHHHHHHHHCCCCCCh-HHhc
Confidence            566654  4568888889999999999995 4567888999999998854 3444

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=4.8e-41  Score=331.87  Aligned_cols=304  Identities=24%  Similarity=0.279  Sum_probs=248.3

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.++++++++++++.++.+.+....+++++|||+|++|+|+|..|++.|.+||++++.++++++.+++++
T Consensus       114 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  193 (447)
T 1nhp_A          114 VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEF  193 (447)
T ss_dssp             EECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHH
T ss_pred             CcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHH
Confidence            35566789988789999999999999988775445899999999999999999999999999999999999886689999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~~~  164 (358)
                      .+.+.+.+++.||++++++.|++++.+  +.+..+.+ +++++++|.||+|+|++|++++++..+.. .+|+|.||++||
T Consensus       194 ~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~  270 (447)
T 1nhp_A          194 TDVLTEEMEANNITIATGETVERYEGD--GRVQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMR  270 (447)
T ss_dssp             HHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCB
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECcccc
Confidence            999999999999999999999999853  43334554 56789999999999999999987665555 568899999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE--
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV--  242 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~--  242 (358)
                      |+.|+|||+|||+..+...+|.+.+++++..|..||+.+|.||++... ......++.++.++++.++++|+++.++.  
T Consensus       271 t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~  349 (447)
T 1nhp_A          271 TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK-PFPGVQGSSGLAVFDYKFASTGINEVMAQKL  349 (447)
T ss_dssp             CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHH
T ss_pred             CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCC-CCCCccccEEEEECCeeeEEecCCHHHHHHc
Confidence            999999999999997766666666677899999999999999998542 23345678889999999999998865321  


Q ss_pred             -------EEccC--------CCCceEEEEee--CCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320          243 -------HYGNF--------SGTTFGAYWVN--KGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFAL  303 (358)
Q Consensus       243 -------~~g~~--------~~~~~~~~~~~--~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap  303 (358)
                             ...+.        +..+|.+++.+  +|+|+|+|++|+. +. .++.++.||++++|++||.+++   +.|+|
T Consensus       350 g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~---~~~~P  426 (447)
T 1nhp_A          350 GKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYAD---FFFQP  426 (447)
T ss_dssp             TCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCC---CCCCT
T ss_pred             CCceEEEEEEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcc---eecCC
Confidence                   11110        11236666653  7999999999987 54 4678899999999999998776   78999


Q ss_pred             CcCCCCCCCCccc
Q 018320          304 AVSQKPLPSTPVD  316 (358)
Q Consensus       304 ~~~~~~~~~~~~~  316 (358)
                      ++++.-.+.+..+
T Consensus       427 t~~e~~~~~~~aa  439 (447)
T 1nhp_A          427 AFDKPWNIINTAA  439 (447)
T ss_dssp             TTCCSSCHHHHHH
T ss_pred             CCCCcccHHHHHH
Confidence            9998865554443

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=2.8e-40  Score=329.37  Aligned_cols=303  Identities=21%  Similarity=0.299  Sum_probs=249.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.++++++++.+++.++++.+....+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       151 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  229 (480)
T 3cgb_A          151 RPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDM  229 (480)
T ss_dssp             EECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHH
T ss_pred             cccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHH
Confidence            45556789988789999999999999988876546899999999999999999999999999999999998885 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL  163 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~  163 (358)
                      .+.+.+.+++.||++++++.|++++.+  +.+..+.+. +.++++|.||+|+|++|++++++.. +.. ++|+|.||+++
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~  306 (480)
T 3cgb_A          230 AEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYM  306 (480)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTS
T ss_pred             HHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCc
Confidence            999999999999999999999999863  445455554 5589999999999999999887654 565 57899999999


Q ss_pred             cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE-
Q 018320          164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV-  242 (358)
Q Consensus       164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-  242 (358)
                      ||+.|+|||+|||+..+....|.+.+++++..|..||+.||.||++... ...+..++.++.++++.++++|+++.++. 
T Consensus       307 ~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~  385 (480)
T 3cgb_A          307 QTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRR-AFKGTLGTGIIKFMNLTLARTGLNEKEAKG  385 (480)
T ss_dssp             BCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHH
T ss_pred             cCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCc-cCCCccceeEEEECCcEEEEeCCCHHHHHH
Confidence            9999999999999988776667666677899999999999999998542 12234456788999999999998865321 


Q ss_pred             --------EE-cc-C------CCCceEEEEe--eCCeEEEEEEeCCC-HHH-HHHHHHHHHcCCCcccHHHHhhcCCccc
Q 018320          243 --------HY-GN-F------SGTTFGAYWV--NKGRLVGSFLEGGT-KEE-YEAIAKATRLQPVVEDLAELETQGLGFA  302 (358)
Q Consensus       243 --------~~-g~-~------~~~~~~~~~~--~~g~ilGa~~vg~~-~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~ya  302 (358)
                              .. .. .      ...+|.+++.  ++|+|+|++++|+. +.+ ++.++.||++++|++||.++.   +.|+
T Consensus       386 ~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~---~~~~  462 (480)
T 3cgb_A          386 LHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVD---LSYA  462 (480)
T ss_dssp             TTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCC---CCCC
T ss_pred             cCCceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcc---cccC
Confidence                    11 11 0      1123666665  48999999999987 554 678899999999999998876   7899


Q ss_pred             CCcCCCCCCCCccc
Q 018320          303 LAVSQKPLPSTPVD  316 (358)
Q Consensus       303 p~~~~~~~~~~~~~  316 (358)
                      |++++..++.+..+
T Consensus       463 Pt~~e~~~~~~~a~  476 (480)
T 3cgb_A          463 PPYNSVWDPIQQAA  476 (480)
T ss_dssp             TTTCCSSCHHHHHH
T ss_pred             CCCCCchhHHHHHH
Confidence            99999866655444

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=5.3e-39  Score=316.03  Aligned_cols=283  Identities=27%  Similarity=0.476  Sum_probs=239.1

Q ss_pred             CCccCCCCCCCCCC---eEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDAEN---VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~~~---v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.+++||.+.++   ++++++.+|+.++++.+.  .+++++|||+|++|+|+|..|++.|.+||++++.++++++.++
T Consensus       113 ~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~--~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~  190 (431)
T 1q1r_A          113 RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTA  190 (431)
T ss_dssp             EECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSC
T ss_pred             CccCCCCCCcccCCCceEEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhh
Confidence            45556678876556   999999999999887664  5799999999999999999999999999999999999987789


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEc-CCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEe
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVT  160 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd  160 (358)
                      +++.+.+.+.+++.||++++++.+++++.+ +++.+..+.+.+|+++++|.||+|+|++|++++++.. +..+ ++|.||
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd  269 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVIN  269 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEEC
Confidence            999999999999999999999999999852 3456667888999999999999999999999987654 5555 459999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc-
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-  239 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-  239 (358)
                      ++++|+.|+|||+|||+..+.+.+|.+.+++++..|..||+.+|.||+|..  .++..+|++|+++|++.++++|.+++ 
T Consensus       270 ~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~  347 (431)
T 1q1r_A          270 EHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV--PRDEAAPWFWSDQYEIGLKMVGLSEGY  347 (431)
T ss_dssp             TTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTC
T ss_pred             CCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC--CCCCCCCeEEEEECCceEEEEeCCCCC
Confidence            999999999999999999887777877788899999999999999999876  46778999999999999999998764 


Q ss_pred             -eEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHh
Q 018320          240 -EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       240 -~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  295 (358)
                       +.+..++.....|.+++.++|+|+|++++|.. .....+..+|..+.++. ..+|.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~-~~~~~~~~~i~~~~~~~-~~~l~  402 (431)
T 1q1r_A          348 DRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRP-VEFNQSKQIITDRLPVE-PNLLG  402 (431)
T ss_dssp             SEEEEEEETTTTEEEEEEEETTEEEEEEEESCH-HHHHHHHHHHHTTCCCC-HHHHT
T ss_pred             CEEEEEccCCCCeEEEEEEeCCEEEEEEEECCh-HHHHHHHHHHHCCCCCC-HHHhh
Confidence             45566665555688888899999999999964 45555667777776664 33444

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=3.2e-38  Score=306.10  Aligned_cols=256  Identities=18%  Similarity=0.282  Sum_probs=220.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+  +++++++++|+.++++.+.  ++++++|||||++|+|+|..|+++|.+||++++.++++++.+++++
T Consensus       115 ~p~~p~i~G~~--~v~~~~~~~d~~~l~~~l~--~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~  190 (385)
T 3klj_A          115 IANKIKVPHAD--EIFSLYSYDDALKIKDECK--NKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDG  190 (385)
T ss_dssp             EECCCCCTTCS--CEECCSSHHHHHHHHHHHH--HHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHH
T ss_pred             CcCCCCCCCCC--CeEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHH
Confidence            56666789987  8999999999999998876  4789999999999999999999999999999999999998799999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      .+.+.+.+++.||++++++.++++               |+++++|.||+++|++|++++++.. +..+ ++|.||++|+
T Consensus       191 ~~~~~~~l~~~gV~~~~~~~v~~i---------------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~gi~vd~~~~  254 (385)
T 3klj_A          191 GLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHME  254 (385)
T ss_dssp             HHHHHHHHHTTTCEEECSCCGGGC---------------HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SSEEECTTCB
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEc---------------CeEEecCeEEECcCcccChhhhhhcCCCcC-CCEEECCCcc
Confidence            999999999999999999887665               5679999999999999999988764 5555 4599999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCC-CCCeEEEEecCceEEEeecccce---
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVGE---  240 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~---  240 (358)
                      |+.|+|||+|||+..+...      ..++..|..||+.||.+|+|...  ++. .+|++|+++|++.++++|.++++   
T Consensus       255 t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~aa~~i~g~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  326 (385)
T 3klj_A          255 TSIKDIYACGDVAEFYGKN------PGLINIANKQGEVAGLNACGEDA--SYSEIIPSPILKVSGISIISCGDIENNKPS  326 (385)
T ss_dssp             CSSTTEEECGGGEEETTBC------CCCHHHHHHHHHHHHHHHTTCCC--CCCCCCCCCEEEETTEEEEEESCCTTCCCS
T ss_pred             cCCCCEEEEEeeEecCCCc------ccHHHHHHHHHHHHHHHhcCCCc--CCCCCCCcEEEEeCCCcEEEEcCCCCCCCe
Confidence            9999999999999876432      25788999999999999998763  444 47999999999999999987653   


Q ss_pred             EEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccH
Q 018320          241 VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL  291 (358)
Q Consensus       241 ~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl  291 (358)
                      .+.. +.....|.+++.++|+|+|++++|.. .....+..+|+++.++++|
T Consensus       327 ~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~-~~~~~~~~~i~~~~~~~~~  375 (385)
T 3klj_A          327 KVFR-STQEDKYIVCMLKENKIDAAAVIGDV-SLGTKLKKAIDSSKSFDNI  375 (385)
T ss_dssp             EEEE-EECSSCEEEEEEETTEEEEEEEESCH-HHHHHHHHHHHTTCBCSCC
T ss_pred             EEEE-ECCCCeEEEEEEECCEEEEEEEECCc-HHHHHHHHHHHcCCCcccc
Confidence            3333 44455699999999999999999964 4445788999999999886

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=6.8e-37  Score=308.03  Aligned_cols=282  Identities=22%  Similarity=0.291  Sum_probs=223.9

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.+++++.   +++.   +.+...++++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++
T Consensus       185 ~p~~p~i~G~~~~~v~~~---~~~~---~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~  257 (523)
T 1mo9_A          185 GPGTLDVPGVNAKGVFDH---ATLV---EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNET  257 (523)
T ss_dssp             ECCCCCSTTTTSBTEEEH---HHHH---HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHH
T ss_pred             CCCCCCCCCcccCcEeeH---HHHH---HHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHH
Confidence            455667899877778743   3332   1233323499999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE--EEEEcCCCc-EEecCeEEEeeCCCCChh-hhhcc-ccc-ccCcEEE
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLRDGN-RLPTDMVVVGIGIRPNTS-LFEGQ-LTL-EKGGIKV  159 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v--~~v~~~~g~-~i~~D~vi~a~G~~p~~~-l~~~~-~~~-~~g~i~v  159 (358)
                      .+.+.+.+++.||+++++++|++++.++++.+  ..+++.+|+ ++++|.||+|+|++|+++ +++.. +.. ++|+|.|
T Consensus       258 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~V  337 (523)
T 1mo9_A          258 RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLV  337 (523)
T ss_dssp             HHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCC
T ss_pred             HHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEE
Confidence            99999999999999999999999987445543  357778887 899999999999999998 56543 666 5788999


Q ss_pred             eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc
Q 018320          160 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG  239 (358)
Q Consensus       160 d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~  239 (358)
                      |++|||+.|+|||+|||+..+          .++..|..||+.||.||+|......+..+|+++  +++..++++|+++.
T Consensus       338 d~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vG~~e~  405 (523)
T 1mo9_A          338 NEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKISYTPKNYPDFL--HTHYEVSFLGMGEE  405 (523)
T ss_dssp             CTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEE--ESSSEEEEEECCHH
T ss_pred             CCCCccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCCceEEEeCCHH
Confidence            999999999999999999754          356789999999999999865333466788754  57889999999875


Q ss_pred             eEE-------EE----cc-----------------------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHH
Q 018320          240 EVV-------HY----GN-----------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKAT  282 (358)
Q Consensus       240 ~~~-------~~----g~-----------------------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai  282 (358)
                      ++.       ..    .+                       .+..+|.|++.  ++|+|||+|++|+.+.+ ++.++.||
T Consensus       406 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai  485 (523)
T 1mo9_A          406 EARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLI  485 (523)
T ss_dssp             HHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence            421       11    11                       11123777666  58999999999987554 68899999


Q ss_pred             HcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          283 RLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       283 ~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++++|++||.+++  .+.++|++++.
T Consensus       486 ~~~~t~~~l~~~~--~~~~~Pt~~e~  509 (523)
T 1mo9_A          486 KQGLTVDELGDMD--ELFLNPTHFIQ  509 (523)
T ss_dssp             HTTCBHHHHHTSC--CCSSCSCCHHH
T ss_pred             HCCCCHHHHHhCC--cceECCCHHHH
Confidence            9999999998872  14677887765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=5e-37  Score=305.25  Aligned_cols=278  Identities=22%  Similarity=0.252  Sum_probs=219.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+..+++   +.+++.++    .. .+++++|||||++|+|+|..|++.|.+||++++.++++++.+++++
T Consensus       151 ~p~~p~i~g~~~~~v~---t~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  222 (474)
T 1zmd_A          151 EVTPFPGITIDEDTIV---SSTGALSL----KK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEI  222 (474)
T ss_dssp             EECCCTTCCCCSSSEE---CHHHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHH
T ss_pred             CCCCCCCCCCCcCcEE---cHHHHhhc----cc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHH
Confidence            3555667887655665   34444332    11 4799999999999999999999999999999999999984489999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE-----cCCCcEEecCeEEEeeCCCCChhh--hhc-cccc-ccCc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN-----LRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGG  156 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~-----~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~  156 (358)
                      .+.+.+.|+++||+++++++|++++.++++.+ .+.     ..+++++++|.||+|+|++|++++  ++. ++.+ ++|+
T Consensus       223 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~  301 (474)
T 1zmd_A          223 SKNFQRILQKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR  301 (474)
T ss_dssp             HHHHHHHHHHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSC
T ss_pred             HHHHHHHHHHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCC
Confidence            99999999999999999999999987444323 344     356778999999999999999986  443 3665 4688


Q ss_pred             EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD  236 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~  236 (358)
                      |.||++|||+.|+|||+|||+..+          .++..|..||+.||.||++......+..+|++  .+++..++++|+
T Consensus       302 i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~~~a~vG~  369 (474)
T 1zmd_A          302 IPVNTRFQTKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSV--IYTHPEVAWVGK  369 (474)
T ss_dssp             CCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEE--ECSSSEEEEEEC
T ss_pred             EEECcCCccCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEE--EECCCCeEEEeC
Confidence            999999999999999999999754          35778999999999999986533345567764  478899999999


Q ss_pred             ccceEE-------EEc-----------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320          237 NVGEVV-------HYG-----------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       237 ~~~~~~-------~~g-----------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      ++.++.       ...           ..+..+|.+++.+  +|+|+|+|++|+.+.+ ++.++.||++++|++||.++.
T Consensus       370 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~  449 (474)
T 1zmd_A          370 SEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVC  449 (474)
T ss_dssp             CHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSC
T ss_pred             CHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence            876431       110           1122358787764  8999999999988655 678899999999999998755


Q ss_pred             hcCCcccCCcCCC
Q 018320          296 TQGLGFALAVSQK  308 (358)
Q Consensus       296 ~~~~~yap~~~~~  308 (358)
                          .++|++++.
T Consensus       450 ----~~~Pt~~e~  458 (474)
T 1zmd_A          450 ----HAHPTLSEA  458 (474)
T ss_dssp             ----CCTTCTHHH
T ss_pred             ----CCCCCHHHH
Confidence                566887765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=2.7e-37  Score=307.99  Aligned_cols=250  Identities=17%  Similarity=0.217  Sum_probs=206.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+++||+++++++|++++.++++  ..
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~  260 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--VY  260 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTE--EE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCe--EE
Confidence            4799999999999999999999999999999999999986 89999999999999999999999999999864333  35


Q ss_pred             EEcCC----CcEEecCeEEEeeCCCCChhhh--hcc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc
Q 018320          120 VNLRD----GNRLPTDMVVVGIGIRPNTSLF--EGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  191 (358)
Q Consensus       120 v~~~~----g~~i~~D~vi~a~G~~p~~~l~--~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~  191 (358)
                      +++.+    |+++++|.|++|+|++|+++++  +.. +.. ++|+|.||++|||+.|+|||+|||+..+          .
T Consensus       261 v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~  330 (482)
T 1ojt_A          261 VTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------M  330 (482)
T ss_dssp             EEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------C
T ss_pred             EEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEEEEEcccCCC----------c
Confidence            66666    7789999999999999999873  433 666 4588999999999999999999999753          3


Q ss_pred             cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE------EEc------------cCCCCceE
Q 018320          192 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV------HYG------------NFSGTTFG  253 (358)
Q Consensus       192 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~------~~g------------~~~~~~~~  253 (358)
                      ++..|..||+.||.||++......+..+|  +..+++..++++|+++.++.      ..+            ..+..+|.
T Consensus       331 l~~~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (482)
T 1ojt_A          331 LAHKAVHEGHVAAENCAGHKAYFDARVIP--GVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFT  408 (482)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCCCCCCCC--EEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEE
T ss_pred             cHHHHHHHHHHHHHHHcCCCccCCCCCCC--EEEEcCCCeEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEE
Confidence            57789999999999999865333455566  45678999999999875421      111            01223587


Q ss_pred             EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          254 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       254 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      +++.  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       409 k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~----~~~Pt~~e~  462 (482)
T 1ojt_A          409 KLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTI----HPHPTLGES  462 (482)
T ss_dssp             EEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC----CCSSSSTTH
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc----cCCCCHHHH
Confidence            8776  68999999999988655 678899999999999998765    688888865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.6e-37  Score=309.30  Aligned_cols=276  Identities=20%  Similarity=0.223  Sum_probs=220.3

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+..++++..+..+   +    . ..+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++
T Consensus       155 ~p~~p~i~g~~~~~v~~~~~~~~---~----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  225 (499)
T 1xdi_A          155 SPRILPSAQPDGERILTWRQLYD---L----D-ALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADA  225 (499)
T ss_dssp             EECCCGGGCCCSSSEEEGGGGGG---C----S-SCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHH
T ss_pred             CCCCCCCCCCCcCcEEehhHhhh---h----h-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            34555678877667776544322   1    1 14799999999999999999999999999999999999997 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.+++.||+++++++|++++.++++ + .+++.+|+++++|.||+|+|++|++++  ++. ++.+ ++|+|.||+
T Consensus       226 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~  303 (499)
T 1xdi_A          226 ALVLEESFAERGVRLFKNARAASVTRTGAG-V-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR  303 (499)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEECSSS-E-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-E-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC
Confidence            999999999999999999999999874333 3 567788889999999999999999987  444 3665 458899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccce
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE  240 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  240 (358)
                      +|||+.|+|||+|||+..+          .++..|..||+.||.+|+|.. ....+..+|+  ..+++..++++|+++.+
T Consensus       304 ~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~  371 (499)
T 1xdi_A          304 VSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGVSPIRLRTVAA--TVFTRPEIAAVGVPQSV  371 (499)
T ss_dssp             SSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEE--EECSSSEEEEEESCHHH
T ss_pred             CcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCCccCCCCCCcE--EEEecCCceEeCCCHHH
Confidence            9999999999999999754          356789999999999999863 2234555665  45788999999998764


Q ss_pred             EEEEc------------------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCC
Q 018320          241 VVHYG------------------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL  299 (358)
Q Consensus       241 ~~~~g------------------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~  299 (358)
                      +...|                  ..+..+|.|++.+  +|+|+|++++|+.+.+ ++.++.||++++|++||.++.    
T Consensus       372 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~----  447 (499)
T 1xdi_A          372 IDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTL----  447 (499)
T ss_dssp             HHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSB----
T ss_pred             HHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhccc----
Confidence            31110                  1122357777764  7999999999998665 678899999999999998755    


Q ss_pred             cccCCcCCC
Q 018320          300 GFALAVSQK  308 (358)
Q Consensus       300 ~yap~~~~~  308 (358)
                      .++|++++.
T Consensus       448 ~~~Pt~~e~  456 (499)
T 1xdi_A          448 AVYPSLSGS  456 (499)
T ss_dssp             CCSSSTHHH
T ss_pred             ccCCCchHH
Confidence            566888775

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=3.9e-37  Score=305.23  Aligned_cols=274  Identities=20%  Similarity=0.233  Sum_probs=215.1

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   86 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~   86 (358)
                      |..++++|.+.. +   .+.+++..+.     ..+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.
T Consensus       146 ~~~~~~~g~~~~-~---~~~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~  215 (464)
T 2a8x_A          146 TRLVPGTSLSAN-V---VTYEEQILSR-----ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVS  215 (464)
T ss_dssp             ECCCTTCCCBTT-E---ECHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHH
T ss_pred             CCCCCCCCCCce-E---EecHHHhhcc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHH
Confidence            444556776533 3   3555554432     14799999999999999999999999999999999999996 899999


Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CC--cEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEEE
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKV  159 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~v  159 (358)
                      +.+.+.|+++||++++++++++++.++++ + .+.+. +|  +++++|.|++|+|++|++++  ++. ++.. ++|+|.|
T Consensus       216 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~v  293 (464)
T 2a8x_A          216 KEIEKQFKKLGVTILTATKVESIADGGSQ-V-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGV  293 (464)
T ss_dssp             HHHHHHHHHHTCEEECSCEEEEEEECSSC-E-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCC
T ss_pred             HHHHHHHHHcCCEEEeCcEEEEEEEcCCe-E-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeE
Confidence            99999999999999999999999864333 2 35543 56  67999999999999999987  443 3665 4688999


Q ss_pred             eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC-CCCC-CCCCCCCeEEEEecCceEEEeecc
Q 018320          160 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKT-DKFDYLPFFYSRVFTLSWQFYGDN  237 (358)
Q Consensus       160 d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~-~~~~~~p~~~~~~~~~~~~~~G~~  237 (358)
                      |++|||+.|+|||+|||+..+          .++..|..||+.||.||++ .... ..+..+|+  ..+++..++++|++
T Consensus       294 d~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~~~~a~vG~~  361 (464)
T 2a8x_A          294 DDYMRTNVGHIYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAETLTLGDHRMLPR--ATFCQPNVASFGLT  361 (464)
T ss_dssp             CTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCE--EECSSSEEEEEECC
T ss_pred             CcCCccCCCCEEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCE--EEECCCCeEEEcCC
Confidence            999999999999999999753          3577899999999999998 4432 23455675  46788999999998


Q ss_pred             cceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhh
Q 018320          238 VGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  296 (358)
Q Consensus       238 ~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  296 (358)
                      +.++.      ..+            ..+..+|.|++.  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++. 
T Consensus       362 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~-  440 (464)
T 2a8x_A          362 EQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNV-  440 (464)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSC-
T ss_pred             HHHHHhcCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCc-
Confidence            75421      110            012235877776  48999999999987654 688899999999999998755 


Q ss_pred             cCCcccCCcCCC
Q 018320          297 QGLGFALAVSQK  308 (358)
Q Consensus       297 ~~~~yap~~~~~  308 (358)
                         .++|++++.
T Consensus       441 ---~~~Pt~~e~  449 (464)
T 2a8x_A          441 ---HTHPTMSEA  449 (464)
T ss_dssp             ---CCTTCTTHH
T ss_pred             ---cCCCChHHH
Confidence               566888765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=1.4e-36  Score=301.58  Aligned_cols=276  Identities=20%  Similarity=0.245  Sum_probs=216.7

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..++++|.+.++++   +.+++..+.     ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus       147 ~p~~p~~~g~~~~~v~---t~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  217 (468)
T 2qae_A          147 EPTELPFLPFDEKVVL---SSTGALALP-----RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDV  217 (468)
T ss_dssp             EECCBTTBCCCSSSEE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CcCCCCCCCCCcCcee---chHHHhhcc-----cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHH
Confidence            3555567777655665   445554332     14799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHH-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcC--CC--cEEecCeEEEeeCCCCChhh--hhc-cccc-ccCc
Q 018320           86 ASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGG  156 (358)
Q Consensus        86 ~~~~~~~l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~  156 (358)
                      .+.+.+.| +++||+++++++|++++.++++  ..+.+.  +|  +++++|.|++|+|++|++++  ++. ++.. ++|+
T Consensus       218 ~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~  295 (468)
T 2qae_A          218 TNALVGALAKNEKMKFMTSTKVVGGTNNGDS--VSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGF  295 (468)
T ss_dssp             HHHHHHHHHHHTCCEEECSCEEEEEEECSSS--EEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSC
T ss_pred             HHHHHHHHhhcCCcEEEeCCEEEEEEEcCCe--EEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCC
Confidence            99999999 9999999999999999874433  234544  66  67999999999999999987  443 3665 4688


Q ss_pred             EEEeccccCCCCcEEEEccccc-ccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEee
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYG  235 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~-~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G  235 (358)
                      |.||++|||+.|+|||+|||+. .+          .++..|..||+.||.+|++......+..+|+  ..+++..++++|
T Consensus       296 i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG  363 (468)
T 2qae_A          296 VKIGDHFETSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKPGHVNYGVIPA--VIYTMPEVASVG  363 (468)
T ss_dssp             BCCCTTSBCSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCCCCCCTTSCCE--EECSSSEEEEEE
T ss_pred             EeECCCcccCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEe
Confidence            9999999999999999999998 33          3577899999999999998653334555664  567889999999


Q ss_pred             cccceEE------EEc------------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHH
Q 018320          236 DNVGEVV------HYG------------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAEL  294 (358)
Q Consensus       236 ~~~~~~~------~~g------------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l  294 (358)
                      +++.++.      ..+            ..+..+|.|++.+  +|+|+|+|++|+.+.+ ++.++.||++++|++||.++
T Consensus       364 ~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~  443 (468)
T 2qae_A          364 KSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRT  443 (468)
T ss_dssp             CCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             CCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence            9875431      110            1122358777764  8999999999988655 67889999999999999875


Q ss_pred             hhcCCcccCCcCCC
Q 018320          295 ETQGLGFALAVSQK  308 (358)
Q Consensus       295 ~~~~~~yap~~~~~  308 (358)
                      .    .++|++++.
T Consensus       444 ~----~~~Pt~~e~  453 (468)
T 2qae_A          444 C----HAHPTMSEA  453 (468)
T ss_dssp             C----CCSSCTHHH
T ss_pred             c----cCCCCHHHH
Confidence            5    566887764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=303.35  Aligned_cols=276  Identities=16%  Similarity=0.202  Sum_probs=216.7

Q ss_pred             CCccC-CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            6 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|..+ ++||.+  .++   +.+++..+    . ..+++++|||||++|+|+|..|+++|.+||++++.+++++. +|++
T Consensus       159 ~p~~p~~i~g~~--~~~---~~~~~~~l----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~  227 (479)
T 2hqm_A          159 KAIFPENIPGFE--LGT---DSDGFFRL----E-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDEC  227 (479)
T ss_dssp             EECCCTTSTTGG--GSB---CHHHHHHC----S-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHH
T ss_pred             CCCCCCCCCCcc--ccc---chHHHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHH
Confidence            34555 678764  232   34444332    1 25799999999999999999999999999999999999986 8999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCChhh-hhc-cccc-ccCcEEEe
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSL-FEG-QLTL-EKGGIKVT  160 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~l-~~~-~~~~-~~g~i~vd  160 (358)
                      +.+.+.+.|++.||+++++++|++++.++++....+.+.+| +++++|.||+|+|++|++.+ ++. ++.. ++|+|.||
T Consensus       228 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd  307 (479)
T 2hqm_A          228 IQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIAD  307 (479)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCC
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeEC
Confidence            99999999999999999999999998744443346778888 78999999999999999966 444 3666 57899999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC---C-CCCCCCCCeEEEEecCceEEEeec
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD---K-TDKFDYLPFFYSRVFTLSWQFYGD  236 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~---~-~~~~~~~p~~~~~~~~~~~~~~G~  236 (358)
                      ++|+|+.|+|||+|||+..+          .++..|.+||+.||.||++..   . ..++..+|+.  .+++..++++|+
T Consensus       308 ~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~--~~~~~~~~~vGl  375 (479)
T 2hqm_A          308 EYQNTNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV--IFSHPEAGSIGI  375 (479)
T ss_dssp             TTCBCSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE--ECCSSCEEEEEC
T ss_pred             CCCccCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE--EECCCCeEEEeC
Confidence            99999999999999997643          367789999999999999754   2 1344556754  356788999998


Q ss_pred             ccceEEE--------Ec------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHH
Q 018320          237 NVGEVVH--------YG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAE  293 (358)
Q Consensus       237 ~~~~~~~--------~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~  293 (358)
                      ++.++..        ..            .....+|.|+..  ++|+|||+|++|+.+.+ ++.++.||++++|++||.+
T Consensus       376 ~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~  455 (479)
T 2hqm_A          376 SEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDN  455 (479)
T ss_dssp             CHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred             CHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence            8654321        11            111234777665  47999999999988665 5778999999999999987


Q ss_pred             HhhcCCcccCCcCCC
Q 018320          294 LETQGLGFALAVSQK  308 (358)
Q Consensus       294 l~~~~~~yap~~~~~  308 (358)
                      +.    .++|++++.
T Consensus       456 ~~----~~hPt~~e~  466 (479)
T 2hqm_A          456 CV----AIHPTSAEE  466 (479)
T ss_dssp             SC----CCSSCSGGG
T ss_pred             Cc----CCCCChHHH
Confidence            65    678888876

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1.7e-37  Score=312.52  Aligned_cols=250  Identities=20%  Similarity=0.275  Sum_probs=194.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .|++++|||||+||+|+|..|+++|.+||++++ +++++. +|+++++.+.+.|+++||++++++.+++++..++ . ..
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~-~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~-~-~~  297 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRG-FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDD-K-IL  297 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETT-E-EE
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccc-cchhHHHHHHHHHHhhcceeecceEEEEEEecCC-e-EE
Confidence            589999999999999999999999999999987 467776 8999999999999999999999999999987433 3 45


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhhc---cccc-cc-CcEEEeccccCCCCcEEEEcccccccccccCcccccccHH
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG---QLTL-EK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  194 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~---~~~~-~~-g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~  194 (358)
                      +.+.++.++.+|.|++|+|++||++.+..   .+.. .+ +.|.+|++|||++|+|||+|||+....         .+..
T Consensus       298 v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p---------~La~  368 (542)
T 4b1b_A          298 VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVP---------ELAP  368 (542)
T ss_dssp             EEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCC---------CCHH
T ss_pred             EEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccCCch---------hHHH
Confidence            77888899999999999999999987642   2444 33 446889999999999999999996531         3577


Q ss_pred             HHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccceEEEEcc---------------------------
Q 018320          195 SARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGN---------------------------  246 (358)
Q Consensus       195 ~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g~---------------------------  246 (358)
                      .|.+||++++++|++.... .++..+|+.+  ++++.++++|+++.++...+.                           
T Consensus       369 ~A~~eg~~aa~~i~g~~~~~~d~~~iP~~v--ft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~  446 (542)
T 4b1b_A          369 VAIKAGEILARRLFKDSDEIMDYSYIPTSI--YTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRA  446 (542)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCCCCSSCCEEE--CSSSCEEEEECCHHHHHHHHCTTTEEEEEC------------------
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCCceEE--eCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhc
Confidence            8999999999999986543 4567788644  678889999999865421110                           


Q ss_pred             --------CCCCceEEEEe---eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          247 --------FSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       247 --------~~~~~~~~~~~---~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                              .+..+|.|+..   ++++|||+|++|+++.++ ..++.||++++|++||.++.    ..+|.++++
T Consensus       447 ~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i----~~HPTlsE~  516 (542)
T 4b1b_A          447 QKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCI----GIHPTDAES  516 (542)
T ss_dssp             -----------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC--------------
T ss_pred             ccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccC----CcCCCHHHH
Confidence                    01123556543   579999999999987765 67899999999999999876    456777776

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1.4e-36  Score=303.88  Aligned_cols=275  Identities=17%  Similarity=0.242  Sum_probs=218.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|..+++||.+  .++   +.+++..+    . ..+++++|||+|++|+|+|..|+++   |.+||++++.+++++. +|
T Consensus       166 ~p~~p~i~G~~--~~~---~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d  234 (495)
T 2wpf_A          166 WPQMPAIPGIE--HCI---SSNEAFYL----P-EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FD  234 (495)
T ss_dssp             EECCCCCTTGG--GCE---EHHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SC
T ss_pred             CcCCCCCCCcc--ccc---cHHHHHhh----h-hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cC
Confidence            35555688874  344   33443332    1 2478999999999999999999999   9999999999999986 89


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEE
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIK  158 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~  158 (358)
                      +++.+.+.+.|+++||+++++++|++++.++++. ..+++.+|+++++|.||+|+|++|+++++  +. ++.+ ++|+|.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~  313 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQ  313 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEE
Confidence            9999999999999999999999999998743333 45778899999999999999999999843  33 3555 478899


Q ss_pred             EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN  237 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~  237 (358)
                      ||++|||+.|+|||+|||+..+          .++..|..||+.||.||++... ...+..+|  +..+++..++++|++
T Consensus       314 Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vGl~  381 (495)
T 2wpf_A          314 VDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEGAALVDTVFGNKPRKTDHTRVA--SAVFSIPPIGTCGLI  381 (495)
T ss_dssp             CCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCE--EEECCSSCEEEEECC
T ss_pred             ECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCC--EEEECCCCeEEEeCC
Confidence            9999999999999999999642          4678899999999999998542 13444455  455678999999998


Q ss_pred             cceEE------EEc------------cCCCCce-EEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320          238 VGEVV------HYG------------NFSGTTF-GAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       238 ~~~~~------~~g------------~~~~~~~-~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      +.++.      ...            ..+..+| .|+.++  +|+|||+|++|+.+.+ ++.++.||++++|++||.++.
T Consensus       382 e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~  461 (495)
T 2wpf_A          382 EEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTI  461 (495)
T ss_dssp             HHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSC
T ss_pred             HHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence            75431      110            1123458 887764  8999999999988655 678899999999999998754


Q ss_pred             hcCCcccCCcCCC
Q 018320          296 TQGLGFALAVSQK  308 (358)
Q Consensus       296 ~~~~~yap~~~~~  308 (358)
                          .++|++++.
T Consensus       462 ----~~hPt~~e~  470 (495)
T 2wpf_A          462 ----GVHPTSAEE  470 (495)
T ss_dssp             ----CCSSCSGGG
T ss_pred             ----cCCCChHHH
Confidence                788888886

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1e-36  Score=301.56  Aligned_cols=275  Identities=21%  Similarity=0.258  Sum_probs=214.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..++++|.+.. ++   +..++.++.     ..+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       144 ~p~~~~~~g~~~~-v~---~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  213 (455)
T 1ebd_A          144 RPIELPNFKFSNR-IL---DSTGALNLG-----EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQM  213 (455)
T ss_dssp             EECCBTTBCCCSS-EE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCccce-Ee---cHHHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHH
Confidence            3444556776532 33   455544321     14799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCcEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEE
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIK  158 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~  158 (358)
                      .+.+.+.|++.||+++++++|++++.++++  ..+.+.   +++++++|.|++|+|++|++++  ++. .+.. ++|+|.
T Consensus       214 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~  291 (455)
T 1ebd_A          214 AAIIKKRLKKKGVEVVTNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIE  291 (455)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBC
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEe
Confidence            999999999999999999999999864332  234443   4568999999999999999987  343 3555 468899


Q ss_pred             EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV  238 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~  238 (358)
                      ||++|||+.|+|||+|||+..+          .++..|..||+.||.||++......+..+|+  ..+++..++++|+++
T Consensus       292 vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e  359 (455)
T 1ebd_A          292 VDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHPSAVDYVAIPA--VVFSDPECASVGYFE  359 (455)
T ss_dssp             CCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCCCCCCCSCCCE--EECSSSCEEEEECCH
T ss_pred             eCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCH
Confidence            9999999999999999999754          3577899999999999998653334455664  567889999999987


Q ss_pred             ceEE------EEc------------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhc
Q 018320          239 GEVV------HYG------------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ  297 (358)
Q Consensus       239 ~~~~------~~g------------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~  297 (358)
                      .++.      ..+            ..+..+|.+++.+  +|+|+|+|++|+.+.+ ++.++.||++++|++||.++.  
T Consensus       360 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~--  437 (455)
T 1ebd_A          360 QQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTI--  437 (455)
T ss_dssp             HHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSC--
T ss_pred             HHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcc--
Confidence            5431      111            0122358777764  8999999999988655 678899999999999998765  


Q ss_pred             CCcccCCcCCC
Q 018320          298 GLGFALAVSQK  308 (358)
Q Consensus       298 ~~~yap~~~~~  308 (358)
                        .++|++++.
T Consensus       438 --~~~Pt~~e~  446 (455)
T 1ebd_A          438 --HAHPTLGEI  446 (455)
T ss_dssp             --CCTTSSTHH
T ss_pred             --cCCCCHHHH
Confidence              566888764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3e-36  Score=301.78  Aligned_cols=284  Identities=15%  Similarity=0.187  Sum_probs=218.4

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+  .+++   .+++.++    .  .+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus       152 ~p~~p~i~G~~--~~~~---~~~~~~~----~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  219 (500)
T 1onf_A          152 KPVFPPVKGIE--NTIS---SDEFFNI----K--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESV  219 (500)
T ss_dssp             CBCCCSCTTGG--GCEE---HHHHTTC----C--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHH
T ss_pred             CCCCCCCCCCC--cccC---HHHHhcc----C--CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhh
Confidence            45555688864  3443   3343322    1  2789999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE-EecCeEEEeeCCCCChh-h-hhc-ccccccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTS-L-FEG-QLTLEKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~-l-~~~-~~~~~~g~i~vd~  161 (358)
                      .+.+.+.|+++||+++++++|++++.++++. ..+.+.+|++ +++|.|++|+|++|+++ + ++. ++..++|+|.||+
T Consensus       220 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~  298 (500)
T 1onf_A          220 INVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDE  298 (500)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECT
T ss_pred             HHHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECC
Confidence            9999999999999999999999998744443 3577888988 99999999999999996 4 333 3555678899999


Q ss_pred             cccCCCCcEEEEcccccccccc-----------------------cC-cccccccHHHHHHHHHHHHHHHcCCCC-CCCC
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKL-----------------------LG-ETRRLEHVDSARKSAKHAVAAIMEPDK-TDKF  216 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~-----------------------~g-~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~  216 (358)
                      ++||+.|+|||+|||+..+...                       ++ .....+++..|.+||+.||.||++... ...+
T Consensus       299 ~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~  378 (500)
T 1onf_A          299 NQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNY  378 (500)
T ss_dssp             TCBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCC
T ss_pred             CcccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCC
Confidence            9999999999999999532110                       00 002346889999999999999998542 2345


Q ss_pred             CCCCeEEEEecCceEEEeecccceEEEE--------c----------------cCCCCceEEEEe--eCCeEEEEEEeCC
Q 018320          217 DYLPFFYSRVFTLSWQFYGDNVGEVVHY--------G----------------NFSGTTFGAYWV--NKGRLVGSFLEGG  270 (358)
Q Consensus       217 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~--------g----------------~~~~~~~~~~~~--~~g~ilGa~~vg~  270 (358)
                      ..+|++  .+++..++++|+++.++...        .                .....+|.|+.+  ++|+|||+|++|+
T Consensus       379 ~~~p~~--~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~  456 (500)
T 1onf_A          379 KLIPTV--IFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGL  456 (500)
T ss_dssp             SSCCEE--ECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEEST
T ss_pred             CCCCeE--EEcCcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECC
Confidence            566754  46788999999886543211        0                011234777665  5899999999998


Q ss_pred             CHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          271 TKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       271 ~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      .+.+ ++.++.||+.++|++||.++.    .++|++++.
T Consensus       457 ~a~~~i~~~~~ai~~~~t~~~l~~~~----~~~Pt~~e~  491 (500)
T 1onf_A          457 NADEIVQGFAVALKMNATKKDFDETI----PIHPTAAEE  491 (500)
T ss_dssp             THHHHHHHHHHHHHTTCBHHHHHTSC----CCTTCSTTH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHhccc----cCCCCHHHH
Confidence            7655 678899999999999998764    778888775

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.7e-36  Score=302.88  Aligned_cols=275  Identities=17%  Similarity=0.260  Sum_probs=218.4

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|..+++||.+  ++   .+.+++..+    . ..+++++|||||++|+|+|..|.++   |.+||++++.+++++. +|
T Consensus       162 ~p~~p~i~g~~--~~---~~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d  230 (490)
T 1fec_A          162 WPQHLGIEGDD--LC---ITSNEAFYL----D-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FD  230 (490)
T ss_dssp             EECCCCSBTGG--GC---BCHHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SC
T ss_pred             CCCCCCCCCcc--ce---ecHHHHhhh----h-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-cC
Confidence            34455677763  33   344444332    1 2478999999999999999999999   9999999999999986 89


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEE
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIK  158 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~  158 (358)
                      +++.+.+.+.|+++||+++++++|++++.++++. ..+++.+|+++++|.||+|+|++|+++.  ++. ++.+ ++|+|.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~  309 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIK  309 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEE
Confidence            9999999999999999999999999998744333 3577888989999999999999999973  333 3666 478899


Q ss_pred             EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN  237 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~  237 (358)
                      ||++|||+.|+|||+|||+..+          .++..|.+||+.+|.||++... ...+..+|+  ..+++..++++|++
T Consensus       310 Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~~a~vG~~  377 (490)
T 1fec_A          310 VDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AVFSIPPMGVCGYV  377 (490)
T ss_dssp             CCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EECCSSCEEEEECC
T ss_pred             ECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EEECCCCeEEEeCC
Confidence            9999999999999999999642          4688899999999999998542 234555664  55678999999998


Q ss_pred             cceEE------EEc------------cCCCCceE-EEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320          238 VGEVV------HYG------------NFSGTTFG-AYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       238 ~~~~~------~~g------------~~~~~~~~-~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      +.++.      ...            .....+|. |+.++  +|+|||+|++|+.+.+ ++.++.||++++|++||.++ 
T Consensus       378 e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~-  456 (490)
T 1fec_A          378 EEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNT-  456 (490)
T ss_dssp             HHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS-
T ss_pred             HHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc-
Confidence            75431      110            11234577 87764  8999999999988665 67889999999999999875 


Q ss_pred             hcCCcccCCcCCC
Q 018320          296 TQGLGFALAVSQK  308 (358)
Q Consensus       296 ~~~~~yap~~~~~  308 (358)
                         +.++|++++.
T Consensus       457 ---~~~hPt~~e~  466 (490)
T 1fec_A          457 ---IGVHPTSAEE  466 (490)
T ss_dssp             ---CCCSSCSGGG
T ss_pred             ---ccCCCCHHHH
Confidence               4788888887

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.6e-36  Score=301.13  Aligned_cols=276  Identities=21%  Similarity=0.250  Sum_probs=216.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..++++|.+.++++   +..++..+    . ..+++++|||||++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       150 ~p~~p~~~g~~~~~v~---~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~  220 (470)
T 1dxl_A          150 DVKSLPGVTIDEKKIV---SSTGALAL----S-EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEI  220 (470)
T ss_dssp             EECCBTTBCCCSSSEE---CHHHHTTC----S-SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCCCcccEE---eHHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHH
Confidence            3455567776655665   33444332    1 14799999999999999999999999999999999999985 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CC--cEEecCeEEEeeCCCCChhh--hhc-cccc-ccCc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGG  156 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~  156 (358)
                      .+.+.+.|++.||+++++++|++++.++++  ..+.+.   +|  +++++|.|++|+|++|++++  ++. ++.+ ++|+
T Consensus       221 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~  298 (470)
T 1dxl_A          221 RKQFQRSLEKQGMKFKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGR  298 (470)
T ss_dssp             HHHHHHHHHHSSCCEECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSC
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCC
Confidence            999999999999999999999999864333  234443   44  68999999999999999987  443 3565 4688


Q ss_pred             EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD  236 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~  236 (358)
                      |.||++|||+.|+|||+|||+..+          .++..|..||+.||.||++......+..+|  +..+++..++++|+
T Consensus       299 i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~~~~a~vG~  366 (470)
T 1dxl_A          299 ILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKVGHVDYDKVP--GVVYTNPEVASVGK  366 (470)
T ss_dssp             BCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSCCCCCTTSCC--EEECSSSEEEEEEC
T ss_pred             EeECcCCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCcCCCCCCCC--EEEECCCceEEEcC
Confidence            999999999999999999999754          357789999999999999865333445566  45678999999999


Q ss_pred             ccceEE------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320          237 NVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       237 ~~~~~~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      ++.++.      ..+            ..+..+|.+++.  ++|+|+|+|++|+.+.+ ++.++.||++++|++||.++.
T Consensus       367 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~  446 (470)
T 1dxl_A          367 TEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVC  446 (470)
T ss_dssp             CHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred             CHHHHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence            875421      110            012345877776  48999999999988655 678899999999999998754


Q ss_pred             hcCCcccCCcCCC
Q 018320          296 TQGLGFALAVSQK  308 (358)
Q Consensus       296 ~~~~~yap~~~~~  308 (358)
                          .++|++++.
T Consensus       447 ----~~~Pt~~e~  455 (470)
T 1dxl_A          447 ----HAHPTMSEA  455 (470)
T ss_dssp             ----CCSSCTTHH
T ss_pred             ----cCCCChHHH
Confidence                566888765

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=3.5e-36  Score=297.45  Aligned_cols=275  Identities=17%  Similarity=0.202  Sum_probs=216.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+  .+   .+.+++..+    . ..+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       142 ~p~~p~i~g~~--~~---~~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~  210 (450)
T 1ges_A          142 RPSHPDIPGVE--YG---IDSDGFFAL----P-ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMI  210 (450)
T ss_dssp             EECCCCSTTGG--GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCcc--ce---ecHHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHH
Confidence            35555678764  23   344554433    1 24799999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.+++.||+++++++|++++.++++. ..+.+.+|+++++|.||+|+|++|+++.  ++. ++.. ++|+|.||+
T Consensus       211 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~  289 (450)
T 1ges_A          211 SETLVEVMNAEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDK  289 (450)
T ss_dssp             HHHHHHHHHHHSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCT
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECC
Confidence            9999999999999999999999998744443 3577889989999999999999999973  333 3665 578899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeecccc
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVG  239 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~  239 (358)
                      ++||+.|+|||+|||+..+          .++..|.+||+.+|.||++....  ..+..+|+.  .+++..++++|+++.
T Consensus       290 ~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~--~~~~~~~a~vG~~e~  357 (450)
T 1ges_A          290 YQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTV--VFSHPPIGTVGLTEP  357 (450)
T ss_dssp             TSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEE--ECCSSCEEEEECCHH
T ss_pred             CCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeE--EECCCceEEEeCCHH
Confidence            9999999999999998643          45778999999999999985422  245567754  456788999998765


Q ss_pred             eEEEE-c-------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhh
Q 018320          240 EVVHY-G-------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  296 (358)
Q Consensus       240 ~~~~~-g-------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  296 (358)
                      ++... |                   .....+|.|+..  ++|+|+|+|++|+++.+ ++.++.||++++|++||.++. 
T Consensus       358 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~-  436 (450)
T 1ges_A          358 QAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTV-  436 (450)
T ss_dssp             HHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC-
T ss_pred             HHHhcCCCCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc-
Confidence            43211 0                   111223767665  48999999999988665 678899999999999998765 


Q ss_pred             cCCcccCCcCCC
Q 018320          297 QGLGFALAVSQK  308 (358)
Q Consensus       297 ~~~~yap~~~~~  308 (358)
                         .++|.+++.
T Consensus       437 ---~~hPt~~e~  445 (450)
T 1ges_A          437 ---AIHPTAAEE  445 (450)
T ss_dssp             ---CCSSCSGGG
T ss_pred             ---cCCCChHHH
Confidence               677777765

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=2.1e-36  Score=301.06  Aligned_cols=275  Identities=19%  Similarity=0.238  Sum_probs=214.4

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH
Q 018320           11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   90 (358)
Q Consensus        11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~   90 (358)
                      .+||.+..+ +.+.+.+++.+++    . .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus       159 ~~~g~~~~~-~~v~~~~~~~~~~----~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~  231 (478)
T 1v59_A          159 PFPGIEIDE-EKIVSSTGALSLK----E-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQ  231 (478)
T ss_dssp             CCTTCCCCS-SSEECHHHHTTCS----S-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHH
T ss_pred             CCCCCCCCC-ceEEcHHHHHhhh----c-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cCHHHHHHHH
Confidence            356654443 2244566655432    1 4799999999999999999999999999999999999995 8999999999


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----CCcEEecCeEEEeeCCCCChh--hhhcc-ccc-ccCcEEEec
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTS--LFEGQ-LTL-EKGGIKVTG  161 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~vi~a~G~~p~~~--l~~~~-~~~-~~g~i~vd~  161 (358)
                      +.|++.||+++++++|++++.++++....+.+.     +++++++|.||+|+|++|+++  +++.. +.+ ++|+|.||+
T Consensus       232 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  311 (478)
T 1v59_A          232 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDD  311 (478)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCT
T ss_pred             HHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECc
Confidence            999999999999999999985213333445554     456899999999999999998  55543 665 478899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  241 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  241 (358)
                      +|||+.|+|||+|||+..+          .++..|..||+.||.||++.....++..+|+  ..+++..++++|+++.++
T Consensus       312 ~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a  379 (478)
T 1v59_A          312 QFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPS--VMYSHPEVAWVGKTEEQL  379 (478)
T ss_dssp             TSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCTTSCCE--EECSSSEEEEEECCHHHH
T ss_pred             CCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCE--EEEcCCcEEEEECCHHHH
Confidence            9999999999999999854          3567899999999999998653345666775  456788999999987542


Q ss_pred             E-------EEc-----------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320          242 V-------HYG-----------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  300 (358)
Q Consensus       242 ~-------~~g-----------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  300 (358)
                      .       ...           ..+..+|.+++.  ++|+|+|++++|+.+.+ +..++.||++++|++||.++.    .
T Consensus       380 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~----~  455 (478)
T 1v59_A          380 KEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVC----H  455 (478)
T ss_dssp             HHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSC----C
T ss_pred             HHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC----C
Confidence            1       110           012234766655  48999999999988655 678899999999999998776    3


Q ss_pred             ccCCcCCC
Q 018320          301 FALAVSQK  308 (358)
Q Consensus       301 yap~~~~~  308 (358)
                      ++|++++.
T Consensus       456 ~~Pt~~e~  463 (478)
T 1v59_A          456 AHPTLSEA  463 (478)
T ss_dssp             CTTCTTHH
T ss_pred             CCCCHHHH
Confidence            56887765

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=4.9e-36  Score=298.47  Aligned_cols=252  Identities=19%  Similarity=0.218  Sum_probs=203.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+++||++++++.+++++.++++....
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~  264 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS  264 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEE
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEE
Confidence            4799999999999999999999999999999999999986 899999999999999999999999999998755552335


Q ss_pred             EEcCC---C----cEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCccc
Q 018320          120 VNLRD---G----NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR  188 (358)
Q Consensus       120 v~~~~---g----~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~  188 (358)
                      +.+.+   |    +++++|.|++|+|++|+++.  ++. ++.+ ++|+|.||++++|+.|+|||+|||+..+        
T Consensus       265 v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~--------  336 (478)
T 3dk9_A          265 MVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA--------  336 (478)
T ss_dssp             EEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGGCSS--------
T ss_pred             EEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecCCCC--------
Confidence            66654   2    57999999999999999983  333 3666 6788999999999999999999999544        


Q ss_pred             ccccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEEecCceEEEeecccceEEEEc-------------c-------
Q 018320          189 RLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------------N-------  246 (358)
Q Consensus       189 ~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-------------~-------  246 (358)
                        .++..|..||+.||.+|++..  ....+..+|+  ..++++.++++|+++.++...+             .       
T Consensus       337 --~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~  412 (478)
T 3dk9_A          337 --LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPT--VVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTK  412 (478)
T ss_dssp             --CCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCE--EECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCS
T ss_pred             --ccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCe--EEECCCceEEeeCCHHHHHhhCCCccEEEEEeecCcchhhhhc
Confidence              357789999999999999872  2235566775  4467888999999886532111             0       


Q ss_pred             CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          247 FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       247 ~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ....+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.    ..+|.+++.
T Consensus       413 ~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  473 (478)
T 3dk9_A          413 RKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTV----AIHPTSSEE  473 (478)
T ss_dssp             SCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC----CCSSSSGGG
T ss_pred             CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc----cCCCChHHH
Confidence            11234767654  58999999999988655 678899999999999998855    566777665

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=3.8e-36  Score=299.02  Aligned_cols=250  Identities=22%  Similarity=0.253  Sum_probs=204.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.|++.||++++++++++++.++++  ..
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~--~~  255 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ--VT  255 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC--EE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCE--EE
Confidence            5799999999999999999999999999999999999986 89999999999999999999999999999874433  23


Q ss_pred             EEcCCC---cEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCccccccc
Q 018320          120 VNLRDG---NRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH  192 (358)
Q Consensus       120 v~~~~g---~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~  192 (358)
                      +.+.++   +++++|.|++|+|++|+++++  +. .+.+ ++|+|.||++++|+.|+|||+|||+..+          .+
T Consensus       256 v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~  325 (476)
T 3lad_A          256 VKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA----------ML  325 (476)
T ss_dssp             EEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CC
T ss_pred             EEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccCCCc----------cc
Confidence            555544   679999999999999999853  32 3555 5788999999999999999999999654          35


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE------c-----c-------CCCCceEE
Q 018320          193 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY------G-----N-------FSGTTFGA  254 (358)
Q Consensus       193 ~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~------g-----~-------~~~~~~~~  254 (358)
                      +..|..||+.||++|+|.....++..+|+..  +++..++++|+++.++...      +     .       .+..+|.|
T Consensus       326 ~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k  403 (476)
T 3lad_A          326 AHKASEEGVVVAERIAGHKAQMNYDLIPAVI--YTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVK  403 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCCTTCCCEEE--CSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCCCCCCEEE--ECcCCEEEeeCCHHHHHhcCCCEEEEEEeccccchheecCCCcEEEE
Confidence            7789999999999999876545667778654  6889999999998643211      1     0       12235766


Q ss_pred             EEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          255 YWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       255 ~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      +..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       404 ~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  456 (476)
T 3lad_A          404 VIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMV----FAHPALSEA  456 (476)
T ss_dssp             EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSC----CCSSCSHHH
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc----cCCCChHHH
Confidence            655  58999999999988655 678899999999999999876    456777665

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=9.6e-35  Score=281.24  Aligned_cols=258  Identities=24%  Similarity=0.351  Sum_probs=211.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.+++++.+++.++.++++.+.  .+++++|||+|++|+|+|..|++.|.+||++++.+++++..+++++
T Consensus       112 ~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~  189 (384)
T 2v3a_A          112 EPIRVPVEGDAQDALYPINDLEDYARFRQAAA--GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAA  189 (384)
T ss_dssp             EECCCCCBSTTTTCEEECSSHHHHHHHHHHHT--TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHH
T ss_pred             CcCCCCCCCcCcCCEEEECCHHHHHHHHHhhc--cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHH
Confidence            45566789987788999999999999888775  5899999999999999999999999999999999999987679999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      .+.+.+.+++.||+++++++|++++.++++  ..+.+.+|+++++|.||+|+|++|++++++.. +..++| |.||+++|
T Consensus       190 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~  266 (384)
T 2v3a_A          190 AKAVQAGLEGLGVRFHLGPVLASLKKAGEG--LEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLR  266 (384)
T ss_dssp             HHHHHHHHHTTTCEEEESCCEEEEEEETTE--EEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCB
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEecCCE--EEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCC
Confidence            999999999999999999999999864332  46778899999999999999999999877543 555556 99999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc---eE
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG---EV  241 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~---~~  241 (358)
                      |+.|+|||+|||+.....      ..+++..|..||+.+|.||+|......+..+|+++. .+++++.+.|....   ..
T Consensus       267 t~~~~IyA~GD~~~~~~~------~~~~~~~a~~~g~~~a~~i~g~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~~~~~  339 (384)
T 2v3a_A          267 TSHANIYALGDCAEVDGL------NLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVK-TPACPLVVSPPPRGMDGQW  339 (384)
T ss_dssp             CSSTTEEECGGGEEETTB------CCCSHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEEC-CTTSCEEEECCCTTCCCEE
T ss_pred             CCCCCEEEeeeeeeECCC------CcchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEE-ECCeeEEEecCCCCCCceE
Confidence            999999999999975432      135788899999999999998764345566787543 24578899997643   34


Q ss_pred             EEEccCCCCceEEEEe-eCCeEEEEEEeCCCHHHHHH
Q 018320          242 VHYGNFSGTTFGAYWV-NKGRLVGSFLEGGTKEEYEA  277 (358)
Q Consensus       242 ~~~g~~~~~~~~~~~~-~~g~ilGa~~vg~~~~~~~~  277 (358)
                      ...++..  +|.+++. ++|+|+|++++|+.+.++..
T Consensus       340 ~~~~~~~--g~~~~~~~~~~~i~G~~~~g~~a~e~~~  374 (384)
T 2v3a_A          340 LVEGSGT--DLKVLCRDTAGRVIGYALTGAAVNEKLA  374 (384)
T ss_dssp             EEEEETT--EEEEEEECTTSCEEEEEEEGGGGGGHHH
T ss_pred             EEEecCC--cEEEEEEccCCEEEEEEEECcchHHHHH
Confidence            4444432  4777666 48999999999988776543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=7.7e-36  Score=298.02  Aligned_cols=250  Identities=20%  Similarity=0.287  Sum_probs=205.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.|++.||++++++++++++.++++  ..
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~--~~  273 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDG--AK  273 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTE--EE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCE--EE
Confidence            5799999999999999999999999999999999999986 89999999999999999999999999999874433  23


Q ss_pred             EEcCC---C--cEEecCeEEEeeCCCCChhh--hh-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCccccc
Q 018320          120 VNLRD---G--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL  190 (358)
Q Consensus       120 v~~~~---g--~~i~~D~vi~a~G~~p~~~l--~~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~  190 (358)
                      +.+.+   |  +++++|.||+|+|++|++++  ++ ..+.+ ++|+|.||+++||+.|+|||+|||+..+          
T Consensus       274 v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------  343 (491)
T 3urh_A          274 VTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP----------  343 (491)
T ss_dssp             EEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------
T ss_pred             EEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCc----------
Confidence            44432   4  57999999999999999986  33 33666 5788999999999999999999999654          


Q ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCce
Q 018320          191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTF  252 (358)
Q Consensus       191 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~  252 (358)
                      .++..|..||+.||.+|+|......+..+|+..  +++..++++|+++.++...|           .       .+..+|
T Consensus       344 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  421 (491)
T 3urh_A          344 MLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVV--YTQPEVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGF  421 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEE--CSSSCEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCE
T ss_pred             cchhHHHHHHHHHHHHHcCCCcccCCCCCCEEE--EccCCeEEEeCCHHHHHhCCCCEEEEEEecCcchhhhcCCCCcEE
Confidence            467889999999999999976545566778654  68899999999886532111           0       122347


Q ss_pred             EEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          253 GAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       253 ~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      .|+..  ++|+|||+|++|+++.+ |+.++.||++++|++||.++.    .++|++++.
T Consensus       422 ~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  476 (491)
T 3urh_A          422 VKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTC----HAHPTMSEA  476 (491)
T ss_dssp             EEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC----CCSSCTTHH
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc----cCCCChHHH
Confidence            77665  58999999999998655 678899999999999999876    566887765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=1.1e-35  Score=295.08  Aligned_cols=269  Identities=22%  Similarity=0.282  Sum_probs=212.5

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH
Q 018320           11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   90 (358)
Q Consensus        11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~   90 (358)
                      ++||.  .+++   +.+++.++.    ...+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus       148 gi~~~--~~v~---~~~~~~~l~----~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~  217 (464)
T 2eq6_A          148 GFPFG--EDVW---DSTRALKVE----EGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLR  217 (464)
T ss_dssp             TBCCS--SSEE---CHHHHTCGG----GCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHH
T ss_pred             CCCCC--CcEE---cHHHHHhhh----hhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHH
Confidence            36663  2454   555554432    214789999999999999999999999999999999999985 8999999999


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-C--Cc--EEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-D--GN--RLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~--g~--~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~  161 (358)
                      +.|++.||+++++++|++++.++ +. ..+.+. +  |+  ++++|.|++|+|++|+++++  +. ++.. ++|+|.||+
T Consensus       218 ~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  295 (464)
T 2eq6_A          218 RALEKEGIRVRTKTKAVGYEKKK-DG-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNA  295 (464)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEET-TE-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCT
T ss_pred             HHHHhcCCEEEcCCEEEEEEEeC-CE-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECC
Confidence            99999999999999999998633 32 345554 5  76  89999999999999999863  32 3555 578899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  241 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  241 (358)
                      ++||+.|+|||+|||+..+          .++..|..||+.||.||++.....++. +|+  ..+++..++++|+++.++
T Consensus       296 ~~~t~~~~Iya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~--~~~~~~~~a~vG~~e~~a  362 (464)
T 2eq6_A          296 RMETSVPGVYAIGDAARPP----------LLAHKAMREGLIAAENAAGKDSAFDYQ-VPS--VVYTSPEWAGVGLTEEEA  362 (464)
T ss_dssp             TCBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCC-CCE--EECSSSEEEEEECCHHHH
T ss_pred             CcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCcccCCC-CCe--EEECCCCEEEEeCCHHHH
Confidence            9999999999999999754          357789999999999999865333455 775  456789999999987642


Q ss_pred             E------EEc------------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320          242 V------HYG------------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  300 (358)
Q Consensus       242 ~------~~g------------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  300 (358)
                      .      ..+            ..+..+|.+++.+  +|+|+|+|++|+.+.+ ++.++.||+.++|++||.++    +.
T Consensus       363 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~----~~  438 (464)
T 2eq6_A          363 KRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALT----VH  438 (464)
T ss_dssp             HHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHS----CC
T ss_pred             HhcCCCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC----cC
Confidence            1      110            0122357777664  7999999999998765 57889999999999999874    46


Q ss_pred             ccCCcCCC
Q 018320          301 FALAVSQK  308 (358)
Q Consensus       301 yap~~~~~  308 (358)
                      ++|++++.
T Consensus       439 ~~Pt~~e~  446 (464)
T 2eq6_A          439 PHPTLSES  446 (464)
T ss_dssp             CSSCTTHH
T ss_pred             CCCChHHH
Confidence            78888765

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.8e-36  Score=298.43  Aligned_cols=276  Identities=17%  Similarity=0.201  Sum_probs=215.7

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+  +   +.+.+++.++++.+.. .+++++|||+|++|+|+|..|+++|.+||++++.+++++..+++++
T Consensus       143 ~p~~p~i~G~~--~---~~t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~  216 (466)
T 3l8k_A          143 ETAKLRLPGVE--Y---CLTSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDI  216 (466)
T ss_dssp             EECCCCCTTGG--G---SBCHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHH
T ss_pred             CccCCCCCCcc--c---eEeHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHH
Confidence            46666788876  3   4455666533322322 4799999999999999999999999999999999999997349999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC--CCc--EEecCeEEEeeCCCCChhh-hh-ccccc-ccCcEE
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSL-FE-GQLTL-EKGGIK  158 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~~~l-~~-~~~~~-~~g~i~  158 (358)
                      .+.+.+.++   |+++++++|++++.++++.+ .+.+.  +|+  ++++|.|++|+|++|++++ ++ .++.+ ++| |.
T Consensus       217 ~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~  291 (466)
T 3l8k_A          217 VNTLLSILK---LNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IV  291 (466)
T ss_dssp             HHHHHHHHC---CCEECSCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BC
T ss_pred             HHHHHhcCE---EEEEECCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-Ee
Confidence            999988876   99999999999986432443 46666  666  7999999999999999984 33 34666 466 99


Q ss_pred             EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC--CC-CCCCCCCCeEEEEecCceEEEee
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP--DK-TDKFDYLPFFYSRVFTLSWQFYG  235 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~--~~-~~~~~~~p~~~~~~~~~~~~~~G  235 (358)
                      ||+++||+.|+|||+|||+..+          +++..|..||+.||.||++.  .. ...+..+|+  ..+++..++++|
T Consensus       292 vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~~a~vG  359 (466)
T 3l8k_A          292 VDETMKTNIPNVFATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPSLSYVG  359 (466)
T ss_dssp             CCTTCBCSSTTEEECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSCEEEEE
T ss_pred             ECCCccCCCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCCeEEec
Confidence            9999999999999999999863          46788999999999999986  32 234555664  446788999999


Q ss_pred             cccceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHH
Q 018320          236 DNVGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAEL  294 (358)
Q Consensus       236 ~~~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l  294 (358)
                      +++.++...|           +       .+..+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++
T Consensus       360 ~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  439 (466)
T 3l8k_A          360 ILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASF  439 (466)
T ss_dssp             CCHHHHHHHTCCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHC
T ss_pred             CCHHHHHhCCCCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhcc
Confidence            9986532111           0       12235777665  47999999999998655 57889999999999999886


Q ss_pred             hhcCCcccCCcCCC
Q 018320          295 ETQGLGFALAVSQK  308 (358)
Q Consensus       295 ~~~~~~yap~~~~~  308 (358)
                      .    .++|+++++
T Consensus       440 ~----~~~Pt~~e~  449 (466)
T 3l8k_A          440 A----EQHPSTNEI  449 (466)
T ss_dssp             C----CCTTSTTHH
T ss_pred             c----cCCCChHHH
Confidence            5    788998876

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=1.6e-35  Score=293.83  Aligned_cols=274  Identities=19%  Similarity=0.236  Sum_probs=216.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+  .+   .+.+++..+    . ..+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus       141 ~p~~p~i~G~~--~~---~~~~~~~~~----~-~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~  209 (463)
T 2r9z_A          141 RPIVPRLPGAE--LG---ITSDGFFAL----Q-QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLL  209 (463)
T ss_dssp             EECCCSCTTGG--GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             CCCCCCCCCcc--ce---ecHHHHhhh----h-ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHH
Confidence            34555688864  23   344454433    1 24789999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEEEe
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVT  160 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~vd  160 (358)
                      .+.+.+.+++.||+++++++|++++.++++  ..+++.+|+ ++++|.|++|+|++|++++  ++. .+.+ ++|+|.||
T Consensus       210 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd  287 (463)
T 2r9z_A          210 SATLAENMHAQGIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTD  287 (463)
T ss_dssp             HHHHHHHHHHTTCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCC
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeEC
Confidence            999999999999999999999999864443  467788998 8999999999999999973  332 3555 57889999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeeccc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNV  238 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~  238 (358)
                      ++++|+.|+|||+|||+..+          .++..|..||+.+|.||++....  ..+..+|+.  .+++..++++|+++
T Consensus       288 ~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~~a~vGl~e  355 (463)
T 2r9z_A          288 AYQNTNVPGVYALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTV--VFAHPPLSKVGLSE  355 (463)
T ss_dssp             TTSBCSSTTEEECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEE--ECCSSCEEEEECCH
T ss_pred             CCCccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEE--EeCCCCeEEEcCCH
Confidence            99999999999999998643          46778999999999999986422  345567754  45678899999876


Q ss_pred             ceEEE-------Ec------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhh
Q 018320          239 GEVVH-------YG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET  296 (358)
Q Consensus       239 ~~~~~-------~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~  296 (358)
                      .++..       ..            .....+|.|++.  ++|+|+|+|++|+.+.+ ++.++.||+.++|++||.++. 
T Consensus       356 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~-  434 (463)
T 2r9z_A          356 PEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTV-  434 (463)
T ss_dssp             HHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSC-
T ss_pred             HHHHhcCCCCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc-
Confidence            43211       10            111234777665  48999999999987655 688899999999999998765 


Q ss_pred             cCCcccCCcCCC
Q 018320          297 QGLGFALAVSQK  308 (358)
Q Consensus       297 ~~~~yap~~~~~  308 (358)
                         .++|++++.
T Consensus       435 ---~~hPt~~e~  443 (463)
T 2r9z_A          435 ---AIHPGSAEE  443 (463)
T ss_dssp             ---CCSSSSGGG
T ss_pred             ---cCCCCHHHH
Confidence               677888876

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.7e-35  Score=282.83  Aligned_cols=240  Identities=21%  Similarity=0.373  Sum_probs=197.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||  .++++++++.+|+.++++.+.  ++++++|||||++|+|+|..|+++|.+||++++.+++++  +++++
T Consensus       112 ~p~~p~i~G--~~~v~~~~~~~~~~~l~~~~~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~  185 (367)
T 1xhc_A          112 RAREPQIKG--KEYLLTLRTIFDADRIKESIE--NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEEL  185 (367)
T ss_dssp             EECCCCSBT--GGGEECCCSHHHHHHHHHHHH--HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHH
T ss_pred             CCCCCCCCC--cCCEEEEcCHHHHHHHHHHhh--cCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHH
Confidence            455667888  468999999999999988775  358999999999999999999999999999999999988  89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ  164 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~  164 (358)
                      .+.+.+.|+++||+++++++|++++.   .   .+++.+|+ +++|.|++|+|++|++++++.. +..+ ++|.||++||
T Consensus       186 ~~~l~~~l~~~gV~i~~~~~v~~i~~---~---~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~  257 (367)
T 1xhc_A          186 SNMIKDMLEETGVKFFLNSELLEANE---E---GVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFR  257 (367)
T ss_dssp             HHHHHHHHHHTTEEEECSCCEEEECS---S---EEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSB
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEe---e---EEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcc
Confidence            99999999999999999999999962   1   36678887 9999999999999999877654 5555 4599999999


Q ss_pred             CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEEecCceEEEeecccceEEE
Q 018320          165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEVVH  243 (358)
Q Consensus       165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~~~  243 (358)
                      |+.|+|||+|||+.....      ...++..|..||+.||.||++..  .++.. +|+.++.++++.++++|+++.+...
T Consensus       258 t~~~~IyA~GD~a~~~~~------~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~  329 (367)
T 1xhc_A          258 TSAKDVYAIGDCAEYSGI------IAGTAKAAMEQARVLADILKGEP--RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKW  329 (367)
T ss_dssp             CSSTTEEECGGGEEBTTB------CCCSHHHHHHHHHHHHHHHTTCC--CCCCSSCCEEEEEETTEEEEEEECCSSCEEE
T ss_pred             cCCCCEEEeEeeeecCCC------CccHHHHHHHHHHHHHHHhcCCC--ccCCCCCCceEEEECCceEEEECCCCCCCcc
Confidence            999999999999976432      12478899999999999999865  23444 4555678999999999999876543


Q ss_pred             EccCCCCceEEEEeeCCeEEEEEEeCCCH
Q 018320          244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTK  272 (358)
Q Consensus       244 ~g~~~~~~~~~~~~~~g~ilGa~~vg~~~  272 (358)
                      .     .+|.+++.++|+|+|++++|+..
T Consensus       330 ~-----~~~~k~~~~~~~ilG~~~~g~~~  353 (367)
T 1xhc_A          330 I-----EDNTKVFYENGKIIGAVVFNDIR  353 (367)
T ss_dssp             E-----ETTEEEEC-----CEEEEESCHH
T ss_pred             c-----ceEEEEEEECCEEEEEEEECChH
Confidence            3     34888888889999999999643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.6e-35  Score=293.73  Aligned_cols=273  Identities=19%  Similarity=0.247  Sum_probs=216.5

Q ss_pred             Cc-cCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            7 LE-EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         7 P~-~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      |. .+++||.+  .+   .+.+++..+.     ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       145 p~~~p~i~G~~--~~---~~~~~~~~~~-----~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~  213 (463)
T 4dna_A          145 PSPHDALPGHE--LC---ITSNEAFDLP-----ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDM  213 (463)
T ss_dssp             ECCCTTSTTGG--GC---BCHHHHTTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHH
T ss_pred             cccCCCCCCcc--cc---ccHHHHhhhh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            44 45678865  22   3444433321     24899999999999999999999999999999999999976 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE-cCCCcEEecCeEEEeeCCCCChhh--hh-ccccc-ccCcEEEe
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVT  160 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~-~~~g~~i~~D~vi~a~G~~p~~~l--~~-~~~~~-~~g~i~vd  160 (358)
                      .+.+.+.+++.||++++++.|++++.++++. ..+. +.+|+ +++|.||+|+|++|++++  ++ .++.+ ++|+|.||
T Consensus       214 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd  291 (463)
T 4dna_A          214 RRGLHAAMEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVD  291 (463)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCC
T ss_pred             HHHHHHHHHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeEC
Confidence            9999999999999999999999998754554 3577 88887 999999999999999986  33 33666 67889999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVG  239 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~  239 (358)
                      +++||+.|+|||+|||+..+          +++..|..||+.+|.||++.... ..+..+|+.+  +.++.++++|+++.
T Consensus       292 ~~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~p~~a~vG~te~  359 (463)
T 4dna_A          292 AFSRTSTPGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAV--FSQPEIGTVGITEE  359 (463)
T ss_dssp             TTCBCSSTTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEE--CSSSCEEEEECCHH
T ss_pred             cCCCCCCCCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEE--ECCCCeEEecCCHH
Confidence            99999999999999999743          46778999999999999986532 3556677644  56788999999886


Q ss_pred             eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320          240 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG  298 (358)
Q Consensus       240 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~  298 (358)
                      ++...|           .       ....+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.   
T Consensus       360 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~---  436 (463)
T 4dna_A          360 EAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTM---  436 (463)
T ss_dssp             HHHHHSSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC---
T ss_pred             HHHHcCCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc---
Confidence            532111           1       11234767655  58999999999988655 678899999999999998765   


Q ss_pred             CcccCCcCCC
Q 018320          299 LGFALAVSQK  308 (358)
Q Consensus       299 ~~yap~~~~~  308 (358)
                       .++|.+++.
T Consensus       437 -~~hPt~~e~  445 (463)
T 4dna_A          437 -AVHPTAAEE  445 (463)
T ss_dssp             -CCTTCSGGG
T ss_pred             -cCCCCHHHH
Confidence             566777776

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=3.9e-35  Score=292.32  Aligned_cols=276  Identities=18%  Similarity=0.214  Sum_probs=211.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+.. ++   +.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. +++++
T Consensus       161 ~p~~p~i~G~~~~-~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~  229 (483)
T 3dgh_A          161 RPRYPDIPGAVEY-GI---TSDDLFSL----D-REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQM  229 (483)
T ss_dssp             EECCCSSTTHHHH-CB---CHHHHTTC----S-SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHH
T ss_pred             CcCCCCCCCcccc-cC---cHHHHhhh----h-hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHH
Confidence            4555568886422 22   33343322    1 24789999999999999999999999999999984 66775 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-----EEecCeEEEeeCCCCChhhh--hc-ccccccCcE
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLF--EG-QLTLEKGGI  157 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~vi~a~G~~p~~~l~--~~-~~~~~~g~i  157 (358)
                      .+.+.+.|+++||++++++.+++++.++++.+ .+.+.++.     ++++|.|++|+|++|+++++  +. .+..++|+|
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i  308 (483)
T 3dgh_A          230 AELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI  308 (483)
T ss_dssp             HHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE
Confidence            99999999999999999999999987545543 35555543     79999999999999999876  32 366645999


Q ss_pred             EEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeec
Q 018320          158 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGD  236 (358)
Q Consensus       158 ~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~  236 (358)
                      .||++++|+.|+|||+|||+....         .++..|..||+.||.||+|.... ..+..+|++  .+.+..++++|+
T Consensus       309 ~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~~a~vGl  377 (483)
T 3dgh_A          309 PVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT--VFTPLEYACVGL  377 (483)
T ss_dssp             CCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE--ECSSSEEEEEEC
T ss_pred             EECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE--EECCCccEEEeC
Confidence            999999999999999999985311         35778999999999999986532 355667754  456788999999


Q ss_pred             ccceEEEE--------c-----c-----C---CCCceEEEEe--e-CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccH
Q 018320          237 NVGEVVHY--------G-----N-----F---SGTTFGAYWV--N-KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDL  291 (358)
Q Consensus       237 ~~~~~~~~--------g-----~-----~---~~~~~~~~~~--~-~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl  291 (358)
                      ++.++...        .     .     .   ...+|.|+..  + +|+|||+|++|+++.+ ++.++.||++++|++||
T Consensus       378 te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  457 (483)
T 3dgh_A          378 SEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTL  457 (483)
T ss_dssp             CHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             CHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence            88643210        0     0     0   1234777665  3 6999999999998665 57889999999999999


Q ss_pred             HHHhhcCCcccCCcCCC
Q 018320          292 AELETQGLGFALAVSQK  308 (358)
Q Consensus       292 ~~l~~~~~~yap~~~~~  308 (358)
                      .++.    .++|.+++.
T Consensus       458 ~~~~----~~hPt~~e~  470 (483)
T 3dgh_A          458 INTV----GIHPTTAEE  470 (483)
T ss_dssp             HTSC----CCSSCSGGG
T ss_pred             hhcc----cCCCChHHH
Confidence            8855    567777776

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=3.4e-35  Score=293.57  Aligned_cols=249  Identities=16%  Similarity=0.130  Sum_probs=200.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.|++. |++++++.+++++.++++ + .
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~-v-~  248 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDA-V-E  248 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSS-E-E
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCE-E-E
Confidence            4799999999999999999999999999999999999986 8999999999999988 999999999999874433 3 3


Q ss_pred             EEcC--CC--cEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEEEe-ccccCCCCcEEEEcccccccccccCccccc
Q 018320          120 VNLR--DG--NRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKLLGETRRL  190 (358)
Q Consensus       120 v~~~--~g--~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~  190 (358)
                      +.+.  +|  +++++|.|++|+|++|++++  ++. ++.. ++|.|.|| ++++|+.|+|||+|||+..+          
T Consensus       249 v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~----------  318 (492)
T 3ic9_A          249 VIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL----------  318 (492)
T ss_dssp             EEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSS----------
T ss_pred             EEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCC----------
Confidence            5553  67  67999999999999999987  333 3666 67889999 99999999999999999764          


Q ss_pred             ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeecccceEEEE-----------c-----c------
Q 018320          191 EHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-----------G-----N------  246 (358)
Q Consensus       191 ~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-----------g-----~------  246 (358)
                      +++..|..||+.||.||++....  ..+..+|  +..++++.++++|+++.++...           +     .      
T Consensus       319 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p--~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~  396 (492)
T 3ic9_A          319 TLLHEAADDGKVAGTNAGAYPVIAQGQRRAPL--SVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRV  396 (492)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTTSCCEECCCCCE--EEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCcccCCCCCc--EEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhh
Confidence            35778999999999999974321  2333444  4456789999999987654322           1     0      


Q ss_pred             -CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          247 -FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       247 -~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                       ....+|.|+..  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.    ..+|.+++.
T Consensus       397 ~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  458 (492)
T 3ic9_A          397 MGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMP----FYHPVIEEG  458 (492)
T ss_dssp             TTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSC----CCTTCTHHH
T ss_pred             cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC----CCCCChHHH
Confidence             11234777665  58999999999998766 577899999999999998765    355666554

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=2.2e-34  Score=285.69  Aligned_cols=274  Identities=19%  Similarity=0.214  Sum_probs=213.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+..+++   +.+++.++    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++  +++++
T Consensus       149 ~p~~p~i~G~~~~~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~  218 (467)
T 1zk7_A          149 SPAVPPIPGLKESPYW---TSTEALAS----D-TIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAI  218 (467)
T ss_dssp             EECCCCCTTTTTSCCB---CHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHH
T ss_pred             CCCCCCCCCCCcCcee---cHHHHhcc----c-ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHH
Confidence            4556678887655554   44444432    1 2479999999999999999999999999999999999988  79999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.++++||+++++++|++++.+ ++ ...+.+. +.++++|.||+|+|++|+++++  +. .+.. .+|+|.||+
T Consensus       219 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~  295 (467)
T 1zk7_A          219 GEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQ  295 (467)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCT
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECC
Confidence            999999999999999999999999863 22 2345555 5689999999999999998752  32 3555 467899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  241 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  241 (358)
                      +++|+.|+|||+|||+..+.          .+..|..||+.+|.||++......+..+|  +..+++..++++|+++.++
T Consensus       296 ~~~t~~~~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p--~~~~~~~~~a~vG~~~~~a  363 (467)
T 1zk7_A          296 GMRTSNPNIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMP--AVVFTDPQVATVGYSEAEA  363 (467)
T ss_dssp             TCBCSSTTEEECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCE--EEECSSSEEEEEECCHHHH
T ss_pred             CcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCC--EEEecCCceEEEecCHHHH
Confidence            99999999999999998653          46789999999999999864323445555  4556888999999887542


Q ss_pred             E-------EE--c---------cCCCCceEEEEee--CCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320          242 V-------HY--G---------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  300 (358)
Q Consensus       242 ~-------~~--g---------~~~~~~~~~~~~~--~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  300 (358)
                      .       ..  .         ..+..+|.+++.+  +|+|+|+|++|+.+.+ ++.++.||++++|++||.++.    .
T Consensus       364 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~----~  439 (467)
T 1zk7_A          364 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQL----F  439 (467)
T ss_dssp             HHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSC----C
T ss_pred             HhcCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc----c
Confidence            1       11  0         1123457777764  8999999999988655 577899999999999998766    3


Q ss_pred             ccCCcCCC
Q 018320          301 FALAVSQK  308 (358)
Q Consensus       301 yap~~~~~  308 (358)
                      ..|.+++.
T Consensus       440 ~~pt~~e~  447 (467)
T 1zk7_A          440 PYLTMVEG  447 (467)
T ss_dssp             CTTSTTHH
T ss_pred             CCCCHHHH
Confidence            34555544

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=1.1e-34  Score=286.89  Aligned_cols=276  Identities=21%  Similarity=0.236  Sum_probs=215.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..++++|.+.++++   +..++..+    . ..+++++|||||++|+|+|..|++.|.+||++++.+++++. +++++
T Consensus       140 ~p~~~~~~g~~~~~v~---~~~~~~~~----~-~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~  210 (455)
T 2yqu_A          140 APLIPPWAQVDYERVV---TSTEALSF----P-EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEV  210 (455)
T ss_dssp             EECCCTTBCCCSSSEE---CHHHHTCC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHH
T ss_pred             CCCCCCCCCCCcCcEe---chHHhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHH
Confidence            3555567776655665   33343322    1 14789999999999999999999999999999999999986 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh--hhc-cccc-ccCcEEEec
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FEG-QLTL-EKGGIKVTG  161 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~-~~~~-~~g~i~vd~  161 (358)
                      .+.+.+.+++.||+++++++|++++.++++  ..+++.+|+++++|.||+|+|++|++++  ++. .+.. ++|+|.||+
T Consensus       211 ~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~  288 (455)
T 2yqu_A          211 SRAAERVFKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDE  288 (455)
T ss_dssp             HHHHHHHHHHHTCEEECSCCEEEEEEETTE--EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCT
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEEeCCE--EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECC
Confidence            999999999999999999999999864332  3566778889999999999999999986  333 3555 468899999


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  241 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  241 (358)
                      +++|+.|+|||+|||+..+          .++..|..||+.+|.||++......+..+|  +..+++..++++|+++.++
T Consensus       289 ~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p--~~~~~~~~~a~~G~~~~~a  356 (455)
T 2yqu_A          289 HLRTRVPHIYAIGDVVRGP----------MLAHKASEEGIAAVEHMVRGFGHVDYQAIP--SVVYTHPEIAAVGYTEEEL  356 (455)
T ss_dssp             TSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCGGGCC--EEECSSSEEEEEECCHHHH
T ss_pred             CcccCCCCEEEEecCCCCc----------cCHHHHHHhHHHHHHHHcCCCccCCCCCCC--EEEEcCCceEEEECCHHHH
Confidence            9999999999999998754          357789999999999999864323344455  4567899999999876532


Q ss_pred             E------EEc------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320          242 V------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG  300 (358)
Q Consensus       242 ~------~~g------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~  300 (358)
                      .      ..+            ..+..+|.+++.  ++|+|+|++++|+.+.+ ++.++.+|++++|++|+.++.    .
T Consensus       357 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~----~  432 (455)
T 2yqu_A          357 KAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAP----H  432 (455)
T ss_dssp             HHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSC----C
T ss_pred             HHcCCCEEEEEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc----c
Confidence            1      111            012234777766  48999999999987655 577899999999999998755    5


Q ss_pred             ccCCcCCC
Q 018320          301 FALAVSQK  308 (358)
Q Consensus       301 yap~~~~~  308 (358)
                      ++|++++.
T Consensus       433 ~~Pt~~e~  440 (455)
T 2yqu_A          433 AHPSLSEI  440 (455)
T ss_dssp             CSSCTHHH
T ss_pred             CCCCHHHH
Confidence            56887765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=8.2e-35  Score=290.16  Aligned_cols=250  Identities=20%  Similarity=0.256  Sum_probs=205.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++.+++ .+ .
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~-~v-~  266 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVAKGISIIYEATVSQVQSTEN-CY-N  266 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSS-SE-E
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCC-EE-E
Confidence            4799999999999999999999999999999999999986 8999999999999999999999999999987433 33 6


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhh--hh-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHH
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  195 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l--~~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~  195 (358)
                      +.+.+|+++++|.||+|+|++|++.+  ++ .++.+ ++|+|.||++++|+.|+|||+|||+..+          .++..
T Consensus       267 v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~  336 (484)
T 3o0h_A          267 VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHI----------QLTPV  336 (484)
T ss_dssp             EEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSC----------CCHHH
T ss_pred             EEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCC----------cCHHH
Confidence            78889999999999999999999985  33 34666 5688999999999999999999999743          46778


Q ss_pred             HHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEE
Q 018320          196 ARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYW  256 (358)
Q Consensus       196 A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~  256 (358)
                      |..||+.+|.+|++.... ..+..+|+.+  +++..++++|+++.++...|                  ..+..+|.|+.
T Consensus       337 A~~~g~~aa~~i~~~~~~~~~~~~~p~~~--~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  414 (484)
T 3o0h_A          337 AIHDAMCFVKNAFENTSTTPDYDLITTAV--FSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLV  414 (484)
T ss_dssp             HHHHHHHHHHHHHC---CCCCCTTCCEEE--CCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCCcCCCCCCcEEE--ECCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEEEE
Confidence            999999999999986432 3566677654  56788999999986532211                  01123476765


Q ss_pred             e--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          257 V--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       257 ~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      .  ++|+|||+|++|+++.+ ++.++.||++++|++||.++.    .++|.+++.
T Consensus       415 ~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~  465 (484)
T 3o0h_A          415 VDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTM----AVHPTMSEE  465 (484)
T ss_dssp             EETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSC----CCSSCSGGG
T ss_pred             EECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccc----cCCCChHHH
Confidence            5  58999999999988655 678899999999999998865    566777766

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=3.7e-34  Score=286.08  Aligned_cols=268  Identities=25%  Similarity=0.366  Sum_probs=215.5

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHh----CCCcEEEEeeCCcccCccCCHHHHHHHHHHH
Q 018320           18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCMARLFTPKIASYYEEYY   93 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~----~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l   93 (358)
                      ++++++++++|+.++++.+.  .+++++|||||++|+|+|..|++    .|.+|+++++.+.++++.+++++.+.+.+.+
T Consensus       159 ~~v~~~~~~~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l  236 (493)
T 1m6i_A          159 SRTTLFRKIGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV  236 (493)
T ss_dssp             HTEEECCSHHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred             CceEEEcCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHH
Confidence            57999999999999988776  47999999999999999999987    4789999999888887778999999999999


Q ss_pred             HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccc--cCcEEEeccccCCCCcE
Q 018320           94 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLE--KGGIKVTGRLQSSNSSV  170 (358)
Q Consensus        94 ~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~--~g~i~vd~~~~t~~~~V  170 (358)
                      +++||++++++.|++++.+ ++.+ .+++.+|+++++|.||+++|++|++++++.. +..+  +|+|.||++||| .|+|
T Consensus       237 ~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~I  313 (493)
T 1m6i_A          237 RREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNI  313 (493)
T ss_dssp             HTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTE
T ss_pred             HhcCCEEEeCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCe
Confidence            9999999999999999863 3333 6788899999999999999999999887653 5554  489999999998 6999


Q ss_pred             EEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEec-Cc----------eEEEeecccc
Q 018320          171 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TL----------SWQFYGDNVG  239 (358)
Q Consensus       171 yAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~-~~----------~~~~~G~~~~  239 (358)
                      ||+|||+..+...+|.. ++++|..|..||+.||.||+|..  .++...|+||+.++ +.          .+.++|...+
T Consensus       314 yA~GD~a~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~  390 (493)
T 1m6i_A          314 WVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA--KPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAK  390 (493)
T ss_dssp             EECGGGEEEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC--CCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEEC
T ss_pred             eEeeeeEeccCcccCcc-ccchHHHHHHHHHHHHHHhcCCC--CCcCCcCceeeeeccCcceEEEeccCCCcceEEeecc
Confidence            99999999876655543 56789999999999999999875  57888999999987 33          3444443111


Q ss_pred             -----e------------------------EEEE----ccC-------CCCceEEEEeeCCeEEEEEEeCCCHHHHHHHH
Q 018320          240 -----E------------------------VVHY----GNF-------SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIA  279 (358)
Q Consensus       240 -----~------------------------~~~~----g~~-------~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a  279 (358)
                           +                        ....    |+.       ...+|.++++++|+|+|+.++|. ..++..+.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~  469 (493)
T 1m6i_A          391 ATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNI-FNRMPIAR  469 (493)
T ss_dssp             CCTTCSHHHHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEESC-CSCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEecC-cchHHHHH
Confidence                 0                        0000    110       11225668889999999999994 45567778


Q ss_pred             HHHHcCCCcccHHHH
Q 018320          280 KATRLQPVVEDLAEL  294 (358)
Q Consensus       280 ~ai~~~~~~~dl~~l  294 (358)
                      .+|+.+.+++++.++
T Consensus       470 ~li~~~~~~~~~~~~  484 (493)
T 1m6i_A          470 KIIKDGEQHEDLNEV  484 (493)
T ss_dssp             HHHHHCCBCSCSTTG
T ss_pred             HHHhCCCCCCCHHHH
Confidence            899999998888764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.5e-34  Score=290.60  Aligned_cols=277  Identities=19%  Similarity=0.275  Sum_probs=208.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|..+++||.+. .+   .+.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|+++
T Consensus       184 ~p~~p~i~G~~~-~~---~t~~~~~~l----~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~  252 (519)
T 3qfa_A          184 RPRYLGIPGDKE-YC---ISSDDLFSL----P-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDM  252 (519)
T ss_dssp             EECCCCCTTHHH-HC---BCHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred             CcCCCCCCCccC-ce---EcHHHHhhh----h-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHH
Confidence            455557888542 22   234444332    1 24788999999999999999999999999999985 67775 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCC---CcE-EEEEcCCCc---EEecCeEEEeeCCCCChhhh--hc-cccc--c
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKV-VAVNLRDGN---RLPTDMVVVGIGIRPNTSLF--EG-QLTL--E  153 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~---g~v-~~v~~~~g~---~i~~D~vi~a~G~~p~~~l~--~~-~~~~--~  153 (358)
                      .+.+.+.|+++||++++++.+++++..++   +.+ ..+...+|.   ++++|.|++++|++|+++++  +. .+.+  +
T Consensus       253 ~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~  332 (519)
T 3qfa_A          253 ANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEK  332 (519)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTT
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCC
Confidence            99999999999999999988888765322   322 223344552   57899999999999999863  33 3555  3


Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEE
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQ  232 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~  232 (358)
                      +|+|.||+++||+.|+|||+|||+....         .++..|..||+.||+||++.... ..+..+|+  ..++++.++
T Consensus       333 ~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a  401 (519)
T 3qfa_A          333 TGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--TVFTPLEYG  401 (519)
T ss_dssp             TCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSCEE
T ss_pred             CCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--EEECCCceE
Confidence            6889999999999999999999984321         46778999999999999986532 34555665  456789999


Q ss_pred             EeecccceEEEE-------------cc--------CCCCceEEEEee---CCeEEEEEEeCCCHHH-HHHHHHHHHcCCC
Q 018320          233 FYGDNVGEVVHY-------------GN--------FSGTTFGAYWVN---KGRLVGSFLEGGTKEE-YEAIAKATRLQPV  287 (358)
Q Consensus       233 ~~G~~~~~~~~~-------------g~--------~~~~~~~~~~~~---~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~  287 (358)
                      ++|+++.++...             ..        ....+|.|+..+   +|+|||+|++|+++.+ ++.++.||++++|
T Consensus       402 ~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t  481 (519)
T 3qfa_A          402 ACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLT  481 (519)
T ss_dssp             EEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCB
T ss_pred             EecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence            999988643211             00        012357776653   6999999999998655 5778999999999


Q ss_pred             cccHHHHhhcCCcccCCcCCC
Q 018320          288 VEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       288 ~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++||.++.    .++|++++.
T Consensus       482 ~~~l~~~~----~~hPt~~E~  498 (519)
T 3qfa_A          482 KKQLDSTI----GIHPVCAEV  498 (519)
T ss_dssp             HHHHHHSC----CCTTCGGGG
T ss_pred             HHHHhccc----cCCCChHHH
Confidence            99998755    677877776

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=2e-34  Score=287.70  Aligned_cols=276  Identities=21%  Similarity=0.252  Sum_probs=209.7

Q ss_pred             CCccCC-CCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            6 KLEEFG-LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         6 ~P~~~~-ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +|..++ +||.+. .++   +.+++..+    . ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|++
T Consensus       158 ~p~~p~~i~G~~~-~~~---~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~  226 (488)
T 3dgz_A          158 RPRYPTQVKGALE-YGI---TSDDIFWL----K-ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRG-FDQQ  226 (488)
T ss_dssp             EECCCSSCBTHHH-HCB---CHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHH
T ss_pred             CCCCCCCCCCccc-ccC---cHHHHHhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-ccccc-CCHH
Confidence            455555 787642 222   33343322    1 25789999999999999999999999999999986 46665 8999


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---Cc--EEecCeEEEeeCCCCChhhh--hc-cccc--cc
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLF--EG-QLTL--EK  154 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~--~~-~~~~--~~  154 (358)
                      +.+.+.+.|+++||++++++.+++++..+++.+ .+.+.+   |+  ++++|.|++|+|++|+++++  +. .+.+  ++
T Consensus       227 ~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~  305 (488)
T 3dgz_A          227 MSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKN  305 (488)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSS
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCC
Confidence            999999999999999999999999987444433 344433   54  47999999999999999874  33 3555  36


Q ss_pred             CcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEE
Q 018320          155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQF  233 (358)
Q Consensus       155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~  233 (358)
                      |+|.||+++||+.|+|||+|||+....         .++..|..||+.||.||++.... ..+..+|++  .+.++.+++
T Consensus       306 G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~~a~  374 (488)
T 3dgz_A          306 QKIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTT--VFTPLEYGC  374 (488)
T ss_dssp             CCBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE--ECSSSEEEE
T ss_pred             CeEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCccCCCCCCCEE--EECCCCeEE
Confidence            889999999999999999999985321         35778999999999999986532 345567764  456788999


Q ss_pred             eecccceEEE--------Ec-----c-----C---CCCceEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCc
Q 018320          234 YGDNVGEVVH--------YG-----N-----F---SGTTFGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVV  288 (358)
Q Consensus       234 ~G~~~~~~~~--------~g-----~-----~---~~~~~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~  288 (358)
                      +|+++.++..        ..     .     .   ...+|.|+..   ++|+|||+|++|+++.+ ++.++.||++++|+
T Consensus       375 vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~  454 (488)
T 3dgz_A          375 VGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASY  454 (488)
T ss_dssp             EECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBH
T ss_pred             EeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence            9998854321        10     0     0   1235777655   37999999999988655 57889999999999


Q ss_pred             ccHHHHhhcCCcccCCcCCC
Q 018320          289 EDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       289 ~dl~~l~~~~~~yap~~~~~  308 (358)
                      +||.++.    .++|.+++.
T Consensus       455 ~~l~~~~----~~hPt~~e~  470 (488)
T 3dgz_A          455 AQVMQTV----GIHPTCSEE  470 (488)
T ss_dssp             HHHHTSC----CCSSCSTHH
T ss_pred             HHHhccc----cCCCChHHH
Confidence            9998755    677887776

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=1.3e-33  Score=288.36  Aligned_cols=277  Identities=20%  Similarity=0.276  Sum_probs=209.1

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+. .++   +.+++..+    . ..+++++|||||++|+|+|..|+++|.+||++++. .+++. +++++
T Consensus       260 ~p~~p~i~G~~~-~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~  328 (598)
T 2x8g_A          260 RPKYPEIPGAVE-YGI---TSDDLFSL----P-YFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-FDQQM  328 (598)
T ss_dssp             EECCCSSTTHHH-HCE---EHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred             CCCCCCCCCccc-ceE---cHHHHhhC----c-cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-CCHHH
Confidence            466667888642 222   22332221    1 24789999999999999999999999999999998 66765 89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEc-----CC---CcE-EEEEcCCCcEEe--cCeEEEeeCCCCChhhh--hc-ccc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVD-----SN---GKV-VAVNLRDGNRLP--TDMVVVGIGIRPNTSLF--EG-QLT  151 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~-----~~---g~v-~~v~~~~g~~i~--~D~vi~a~G~~p~~~l~--~~-~~~  151 (358)
                      .+.+.+.|+++||++++++.+++++..     ++   +.+ ..+.+.+|++++  +|.|++|+|++|+++++  +. ++.
T Consensus       329 ~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~  408 (598)
T 2x8g_A          329 AEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVK  408 (598)
T ss_dssp             HHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCC
T ss_pred             HHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCce
Confidence            999999999999999999988888642     11   333 223356787665  99999999999999864  22 355


Q ss_pred             c-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCc
Q 018320          152 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTL  229 (358)
Q Consensus       152 ~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~  229 (358)
                      + ++|+|.||++++|+.|+|||+|||+....         .++..|..||+.||.+|++... ...+..+|+  ..++++
T Consensus       409 ~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~~~~~~  477 (598)
T 2x8g_A          409 LDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATELTDYSNVAT--TVFTPL  477 (598)
T ss_dssp             BCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCE--EECSSS
T ss_pred             ECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCcccCCCCCcE--EEECCC
Confidence            5 56889999999999999999999965321         3677899999999999997543 234555665  456788


Q ss_pred             eEEEeecccceEEE--------Ec-----c--------CCCCceEEEEee---CCeEEEEEEeCCCHHH-HHHHHHHHHc
Q 018320          230 SWQFYGDNVGEVVH--------YG-----N--------FSGTTFGAYWVN---KGRLVGSFLEGGTKEE-YEAIAKATRL  284 (358)
Q Consensus       230 ~~~~~G~~~~~~~~--------~g-----~--------~~~~~~~~~~~~---~g~ilGa~~vg~~~~~-~~~~a~ai~~  284 (358)
                      .++++|+++.++..        ..     .        ....+|.|+..+   +|+|||+|++|+++.+ ++.++.||++
T Consensus       478 ~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~  557 (598)
T 2x8g_A          478 EYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKM  557 (598)
T ss_dssp             CEEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred             ceEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence            99999988654221        10     0        112347776653   7999999999987655 5788999999


Q ss_pred             CCCcccHHHHhhcCCcccCCcCCC
Q 018320          285 QPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       285 ~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++|++||.++    +.++|++++.
T Consensus       558 ~~t~~~l~~~----~~~hPt~~e~  577 (598)
T 2x8g_A          558 GATKADFDRT----IGIHPTCSET  577 (598)
T ss_dssp             TCBHHHHHHS----CCCSSCSGGG
T ss_pred             CCCHHHHhhc----cccCCCHHHH
Confidence            9999999884    5788888876

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.9e-33  Score=276.18  Aligned_cols=248  Identities=22%  Similarity=0.258  Sum_probs=199.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.++++||+++++++|++++.   +. ..
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~-v~  244 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN---GC-LL  244 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET---TE-EE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEe---CC-EE
Confidence            4799999999999999999999999999999999999985 8999999999999999999999999999974   33 34


Q ss_pred             EEcCCC--cEEecCeEEEeeCCCCChhhh--hc-ccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHH
Q 018320          120 VNLRDG--NRLPTDMVVVGIGIRPNTSLF--EG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  194 (358)
Q Consensus       120 v~~~~g--~~i~~D~vi~a~G~~p~~~l~--~~-~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~  194 (358)
                      +...+|  +++++|.|++|+|++|+++++  +. ++..++++|.||++|||+.|+|||+|||+..+          .++.
T Consensus       245 v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~  314 (458)
T 1lvl_A          245 ANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP----------MLAH  314 (458)
T ss_dssp             EECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSS----------CCHH
T ss_pred             EEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEEeeccCCCc----------ccHH
Confidence            444456  689999999999999999853  33 35543228999999999999999999999854          3577


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE------EEc------------cCCCCceEEEE
Q 018320          195 SARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV------HYG------------NFSGTTFGAYW  256 (358)
Q Consensus       195 ~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~------~~g------------~~~~~~~~~~~  256 (358)
                      .|..||+.+|.||+|......+..+|  +..+++..++++|+++.++.      ..+            .....+|.|++
T Consensus       315 ~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~  392 (458)
T 1lvl_A          315 RAMAQGEMVAEIIAGKARRFEPAAIA--AVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVV  392 (458)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCSCCC--EEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCccCCCCCCC--EEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEEEEEE
Confidence            89999999999999865333344556  45678899999998765321      111            11223577776


Q ss_pred             e--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          257 V--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       257 ~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      .  ++++|+|++++|+.+.+ ++.++.||++++|++||.++.    .++|++++.
T Consensus       393 ~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~----~~~Pt~~e~  443 (458)
T 1lvl_A          393 ARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTI----HAHPTLGEA  443 (458)
T ss_dssp             EETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSC----CCTTCTTHH
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----CCCCCHHHH
Confidence            6  58999999999987554 678899999999999988765    568888754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.95  E-value=3.1e-27  Score=236.30  Aligned_cols=192  Identities=20%  Similarity=0.320  Sum_probs=159.4

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcC---------------CCCcEEEEcCcHHHHHHHHHHHhCC------
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVINK------   64 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVIGgG~~gle~A~~L~~~g------   64 (358)
                      +|+.+++||.+ ++.+++++++|+.++++.+...               ...+++|||||++|+|+|..|++++      
T Consensus       168 ~~~~~~ipG~~-e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~  246 (502)
T 4g6h_A          168 EPNTFGIPGVT-DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRK  246 (502)
T ss_dssp             EECCTTCTTHH-HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHH
T ss_pred             ccccCCccCcc-cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHh
Confidence            57888999975 6789999999999988765311               1247999999999999999998643      


Q ss_pred             --------CcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc----EEecCe
Q 018320           65 --------INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN----RLPTDM  132 (358)
Q Consensus        65 --------~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~----~i~~D~  132 (358)
                              .+||++++.+++++. +++++++.+++.|+++||++++++.|++++  +++........||+    ++++|+
T Consensus       247 ~~~~~~~~~~V~lve~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~  323 (502)
T 4g6h_A          247 FLPALAEEVQIHLVEALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHEDGKITEETIPYGT  323 (502)
T ss_dssp             HCHHHHHHCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTTSCEEEEEEECSE
T ss_pred             hcccccccceeEEeccccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecCcccceeeeccCE
Confidence                    689999999999996 899999999999999999999999999996  34444455666764    699999


Q ss_pred             EEEeeCCCCChh---hhhc-cccc-ccCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHH
Q 018320          133 VVVGIGIRPNTS---LFEG-QLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  206 (358)
Q Consensus       133 vi~a~G~~p~~~---l~~~-~~~~-~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  206 (358)
                      ||||+|++|+..   +... .... .+|+|.||++||| ++|+|||+|||+..+.+        +.++.|++||+++|+|
T Consensus       324 viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a~~A~qqg~~~A~n  395 (502)
T 4g6h_A          324 LIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTAQVAHQEAEYLAKN  395 (502)
T ss_dssp             EEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCHHHHHHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------CchHHHHHHHHHHHHH
Confidence            999999999953   3322 2333 5689999999999 89999999999987654        6788999999999999


Q ss_pred             HcC
Q 018320          207 IME  209 (358)
Q Consensus       207 i~g  209 (358)
                      |.+
T Consensus       396 i~~  398 (502)
T 4g6h_A          396 FDK  398 (502)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.91  E-value=5.6e-24  Score=183.70  Aligned_cols=153  Identities=16%  Similarity=0.131  Sum_probs=128.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cC-----CHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~-----~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      +++|||||++|+|+|..|++.|.+|+++++.+.+++.        .+     ++++.+.+.+.+++.||+++++ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6999999999999999999999999999998766531        12     4788999999999999999999 99999


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh-cccccccCcEEEeccccCCCCcEEEEcccccccccccCccc
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR  188 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~  188 (358)
                      +.++++  ..+++.+| ++++|.||+|+|.+|+.  .+ ..+..++|.|.||++++|+.|+|||+|||+..+.       
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~-------  149 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTL--PSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP-------  149 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCHH--HHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS-------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCCc--cccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch-------
Confidence            874444  45778888 89999999999999853  22 2244457789999999999999999999998753       


Q ss_pred             ccccHHHHHHHHHHHHHHHcCC
Q 018320          189 RLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       189 ~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                        +++..|..||+.||.||.+.
T Consensus       150 --~~~~~A~~~g~~aa~~i~~~  169 (180)
T 2ywl_A          150 --GHAIISAGDGAYVAVHLVSD  169 (180)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHhHHHHHHHHHHH
Confidence              36788999999999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.91  E-value=3.3e-25  Score=207.28  Aligned_cols=184  Identities=19%  Similarity=0.194  Sum_probs=135.2

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+......+......+....   ..++++++|||||++|+|+|..|+++|.+||++++.+.+..   +++.
T Consensus       120 ~~~~~~ipG~~~~~~~~~~~~~~~~~~~~---~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~~  193 (314)
T 4a5l_A          120 TAKRMHVPGEDKYWQNGVSACAICDGAVP---IFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKTM  193 (314)
T ss_dssp             EECCCCCTTHHHHBTTTEESCHHHHTTSG---GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH
T ss_pred             cccccCCCccccccccceeeehhhhhhhh---hcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cchh
Confidence            46667789876433322333333322211   12579999999999999999999999999999998876543   3332


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE-----cCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEe
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN-----LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT  160 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~-----~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd  160 (358)
                         ..+.+...+++.+....+.++...+ .....+.     ..+++++++|.|++++|++||++++...+...++++.||
T Consensus       194 ---~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~  269 (314)
T 4a5l_A          194 ---QERVLNHPKIEVIWNSELVELEGDG-DLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILT  269 (314)
T ss_dssp             ---HHHHHTCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCC
T ss_pred             ---hhhhhcccceeeEeeeeeEEEEeee-eccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeC
Confidence               2344566788999888888887632 2222232     234578999999999999999999987666644556699


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      ++||||+|+|||+|||+..+.         .++..|+.||+.||.++.
T Consensus       270 ~~~~Ts~pgIyA~GDv~~~~~---------~~~~~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          270 EGPKTSVDGVFACGDVCDRVY---------RQAIVAAGSGCMAALSCE  308 (314)
T ss_dssp             BTTBCSSTTEEECSTTTCSSC---------CCHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCCCEEEEEeccCCcc---------hHHHHHHHHHHHHHHHHH
Confidence            999999999999999998653         246678999999998874

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.91  E-value=6.5e-24  Score=200.42  Aligned_cols=184  Identities=20%  Similarity=0.253  Sum_probs=147.7

Q ss_pred             CCCccCCCCCCCC---CCeEE-ecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc
Q 018320            5 LKLEEFGLSGSDA---ENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL   80 (358)
Q Consensus         5 ~~P~~~~ipG~~~---~~v~~-l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~   80 (358)
                      ..|+.+++||.+.   .++++ +++.++          ..+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++  
T Consensus       122 ~~p~~~~i~g~~~~~~~~~~~~~~~~~~----------~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--  189 (335)
T 2zbw_A          122 FEPRRIGAPGEREFEGRGVYYAVKSKAE----------FQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--  189 (335)
T ss_dssp             EEECCCCCTTTTTTBTTTEESSCSCGGG----------GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--
T ss_pred             CCCCCCCCCChhhccCcEEEEecCchhh----------cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--
Confidence            3566677888642   23432 222221          1579999999999999999999999999999999988765  


Q ss_pred             CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CC--cEEecCeEEEeeCCCCChhhhhcc-ccccc
Q 018320           81 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTLEK  154 (358)
Q Consensus        81 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~  154 (358)
                       .++..+.+.+.+++.||++++++.+++++.  ++.+..+.+.   +|  +++++|.|++++|++|++++++.. +..++
T Consensus       190 -~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~  266 (335)
T 2zbw_A          190 -HEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEK  266 (335)
T ss_dssp             -CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEET
T ss_pred             -cHHHHHHHHhccccCCeEEecCCcceeEcc--CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccC
Confidence             467788888999999999999999999986  3444456655   67  579999999999999999887654 55567


Q ss_pred             CcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      |+|.||++++|+.|+|||+|||+..+..       ..++..|..||+.+|.+|.+.
T Consensus       267 g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~  315 (335)
T 2zbw_A          267 NKIKVDTTMATSIPGVYACGDIVTYPGK-------LPLIVLGFGEAAIAANHAAAY  315 (335)
T ss_dssp             TEEECCTTCBCSSTTEEECSTTEECTTC-------CCCHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeeCCCCCCCCCCEEEeccccccCcc-------hhhhhhhHHHHHHHHHHHHHH
Confidence            8999999999999999999999986431       256888999999999999764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.91  E-value=5.7e-24  Score=199.26  Aligned_cols=180  Identities=22%  Similarity=0.285  Sum_probs=134.0

Q ss_pred             CCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.++|||.+.   .+++++... |..       ..++|+++|||||++|+|+|..|+++|.+||++++.+++++..  
T Consensus       115 ~~~~~~ipG~~~~~~~~v~~~~~~-~~~-------~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~--  184 (312)
T 4gcm_A          115 EYKKIGVPGEQELGGRGVSYCAVC-DGA-------FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR--  184 (312)
T ss_dssp             EECCCCCTTTTTTBTTTEESCHHH-HGG-------GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH--
T ss_pred             ccCcCCCCChhhhCCccEEeeecc-Ccc-------ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch--
Confidence            466677898764   345433221 111       1258999999999999999999999999999999999887641  


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC--cEEEEEc--CCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcE
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KVVAVNL--RDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGI  157 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g--~v~~v~~--~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i  157 (358)
                          ....+.+++.++.......+..+...+..  .......  .++..+++|.|++++|.+|++.++... +..++|+|
T Consensus       185 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I  260 (312)
T 4gcm_A          185 ----ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYI  260 (312)
T ss_dssp             ----HHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCB
T ss_pred             ----hHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeE
Confidence                12235567788888888777666542221  1111222  234579999999999999999988766 44578899


Q ss_pred             EEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          158 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       158 ~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      .||++||||+|+|||+|||+..+.         .++..|+.||+.||.+|.
T Consensus       261 ~vd~~~~Ts~pgIyA~GDv~~~~~---------~~~~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          261 VTKDDMTTSVPGIFAAGDVRDKGL---------RQIVTATGDGSIAAQSAA  302 (312)
T ss_dssp             CCCTTSBCSSTTEEECSTTBSCSC---------CSHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCccCCCCEEEEeecCCCcc---------hHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987432         357789999999999985

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.90  E-value=1e-23  Score=197.58  Aligned_cols=182  Identities=25%  Similarity=0.287  Sum_probs=144.9

Q ss_pred             CccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320            7 LEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   83 (358)
Q Consensus         7 P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~   83 (358)
                      |..+++||.+   ..+++++.+.++.      +.  .+++++|||+|++|+|+|..|++.|.+||++++.+.+.   .++
T Consensus       116 ~~~~~~~g~~~~~~~~~~~~~~~~~~------~~--~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~  184 (320)
T 1trb_A          116 ARYLGLPSEEAFKGRGVSACATSDGF------FY--RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEK  184 (320)
T ss_dssp             ECCCCCHHHHHTBTTTEESCHHHHGG------GG--TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCH
T ss_pred             cCCCCCCChHHhCCceeEecccCCcc------cc--CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCH
Confidence            4445567643   2355544333221      22  57999999999999999999999999999999988764   367


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC----C--cEEecCeEEEeeCCCCChhhhhcccccccCcE
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD----G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGI  157 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~----g--~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i  157 (358)
                      .+.+.+.+.+++.||++++++++++++.+ ++.+..+.+.+    |  +++++|.||+|+|++|++++++..+..++|+|
T Consensus       185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i  263 (320)
T 1trb_A          185 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYI  263 (320)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEE
T ss_pred             HHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceE
Confidence            88888889999999999999999999873 44555566644    4  57999999999999999998875555558899


Q ss_pred             EEeccc-----cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          158 KVTGRL-----QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       158 ~vd~~~-----~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .||+++     +|+.|+|||+|||+..+.         ..+..|..||+.||.+|..
T Consensus       264 ~vd~~~~~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          264 KVQSGIHGNATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAER  311 (320)
T ss_dssp             CCCCSSSSCTTBCSSTTEEECGGGGCSSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCcccccccCCCCCEEEcccccCCcc---------hhhhhhhccHHHHHHHHHH
Confidence            999987     899999999999998642         3577899999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.90  E-value=1.5e-23  Score=200.28  Aligned_cols=187  Identities=26%  Similarity=0.376  Sum_probs=147.9

Q ss_pred             CCCCccCCCCC-CC-C--CCeEE-ecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320            4 ALKLEEFGLSG-SD-A--ENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus         4 ~~~P~~~~ipG-~~-~--~~v~~-l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +..|+.+++|| .+ .  .++++ +++..+          ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+.+
T Consensus       131 ~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~----------~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          131 AFEPRKLPQLGNIDHLTGSSVYYAVKSVED----------FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             SCCBCCCGGGCCCTTTBTTTEESSCSCGGG----------GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             cCCCCCCCCCCchhhCcCceEEEecCCHHH----------cCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            44677777787 42 2  23543 232221          2579999999999999999999999999999999987765


Q ss_pred             ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC--CC--cEEecCeEEEeeCCCCChhhhhcc-cccc
Q 018320           79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTLE  153 (358)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi~a~G~~p~~~l~~~~-~~~~  153 (358)
                      .   ++..+.+.+.+++.||++++++++++++. +++.+..+.+.  +|  +++++|.||+++|++|++++++.. +..+
T Consensus       201 ~---~~~~~~l~~~~~~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~  276 (360)
T 3ab1_A          201 H---GKTAHEVERARANGTIDVYLETEVASIEE-SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELY  276 (360)
T ss_dssp             C---SHHHHSSHHHHHHTSEEEESSEEEEEEEE-ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE
T ss_pred             C---HHHHHHHHHHhhcCceEEEcCcCHHHhcc-CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc
Confidence            2   45667778888899999999999999986 34555456553  77  579999999999999999887654 5556


Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      +|+|.||++++|+.|+|||+|||+..+..       ..++..|..||+.||.+|.+..
T Consensus       277 ~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~l  327 (360)
T 3ab1_A          277 ENALVVDSHMKTSVDGLYAAGDIAYYPGK-------LKIIQTGLSEATMAVRHSLSYI  327 (360)
T ss_dssp             TTEEECCTTSBCSSTTEEECSTTEECTTC-------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCeeeecCCCcCCCCCEEEecCccCCCCc-------cceeehhHHHHHHHHHHHHhhc
Confidence            78999999999999999999999986431       2568889999999999998643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.90  E-value=4.4e-23  Score=192.63  Aligned_cols=178  Identities=24%  Similarity=0.370  Sum_probs=138.1

Q ss_pred             CccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320            7 LEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   83 (358)
Q Consensus         7 P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~   83 (358)
                      |..+++||.+   .++++++..      +....  ..+++++|||+|++|+|+|..|++.|.+||++++.+++.   +++
T Consensus       115 ~~~~~~~g~~~~~~~~~~~~~~------~~~~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~  183 (310)
T 1fl2_A          115 WRNMNVPGEDQYRTKGVTYCPH------CDGPL--FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ  183 (310)
T ss_dssp             ECCCCCTTTTTTBTTTEESCHH------HHGGG--GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH
T ss_pred             cCCCCCCChhhcccceeEEecc------CcHhh--cCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH
Confidence            4455677764   244554321      11112  257999999999999999999999999999999998762   454


Q ss_pred             HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCC---Cc--EEecCeEEEeeCCCCChhhhhccccc-ccCc
Q 018320           84 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGG  156 (358)
Q Consensus        84 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~  156 (358)
                      .    +.+.|++ .||++++++++++++. +++++..+++.+   |+  ++++|.|++++|++|+++++...+.+ ++|+
T Consensus       184 ~----~~~~l~~~~gv~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~  258 (310)
T 1fl2_A          184 V----LQDKLRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGE  258 (310)
T ss_dssp             H----HHHHHHTCTTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSC
T ss_pred             H----HHHHHhhCCCeEEecCCceEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCc
Confidence            3    4555666 6999999999999986 345555565543   53  68999999999999999888755555 5789


Q ss_pred             EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |.||++++|+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       259 i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          259 IIIDAKCETNVKGVFAAGDCTTVPY---------KQIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             BCCCTTCBCSSTTEEECSTTBSCSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCccCCCCEEEeecccCCcc---------hhhhhhHhhHHHHHHHHHH
Confidence            9999999999999999999998653         3577899999999999864

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.90  E-value=2.6e-23  Score=195.79  Aligned_cols=179  Identities=22%  Similarity=0.320  Sum_probs=138.3

Q ss_pred             CCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.+++||.+.   ++++++...++      ..  ..+++++|||+|++|+|+|..|++.|.+||++++.+.+.   .+
T Consensus       122 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~  190 (325)
T 2q7v_A          122 DPRKLGIPGEDNFWGKGVSTCATCDG------FF--YKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR---AN  190 (325)
T ss_dssp             EECCCCCTTTTTTBTTTEESCHHHHG------GG--GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC---SC
T ss_pred             CcCCCCCCChhhccCceEEEeccCCH------HH--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC---cc
Confidence            355566788653   45554432221      11  157999999999999999999999999999999988754   24


Q ss_pred             HHHHHHHHHHHH-hCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCc--EEecCeEEEeeCCCCChhhhhccccc-ccC
Q 018320           83 PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  155 (358)
Q Consensus        83 ~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g  155 (358)
                      +.+    .+.+. +.||+++++++++++..  ++.+..+.+.   +|+  ++++|.||+|+|++|++++++..+.+ ++|
T Consensus       191 ~~~----~~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g  264 (325)
T 2q7v_A          191 KVA----QARAFANPKMKFIWDTAVEEIQG--ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDG  264 (325)
T ss_dssp             HHH----HHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTS
T ss_pred             hHH----HHHHHhcCCceEecCCceEEEcc--CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCc
Confidence            443    33343 46999999999999986  3444456554   665  79999999999999999988765555 578


Q ss_pred             cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      +|.||++++|+.|+|||+|||+..+.         .++..|..||+.||.+|...
T Consensus       265 ~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~  310 (325)
T 2q7v_A          265 YVDVRDEIYTNIPMLFAAGDVSDYIY---------RQLATSVGAGTRAAMMTERQ  310 (325)
T ss_dssp             CBCCBTTTBCSSTTEEECSTTTCSSC---------CCHHHHHHHHHHHHHHHHHH
T ss_pred             cEecCCCCccCCCCEEEeecccCccH---------HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997631         46788999999999999753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.90  E-value=3.3e-23  Score=194.55  Aligned_cols=178  Identities=25%  Similarity=0.377  Sum_probs=139.2

Q ss_pred             CccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320            7 LEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   83 (358)
Q Consensus         7 P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~   83 (358)
                      |+.+++||.+.   .++++.++.++.      .  ..+++++|||+|++|+|+|..|++.|.+||++++.+.+.   .++
T Consensus       126 ~~~~~i~g~~~~~~~~~~~~~~~~~~------~--~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~---~~~  194 (319)
T 3cty_A          126 HKHLGVKGESEYFGKGTSYCSTCDGY------L--FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM---CEN  194 (319)
T ss_dssp             ECCCCCBTTTTTBTTTEESCHHHHGG------G--GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC---SCH
T ss_pred             cccCCCCChHHhCCceEEEEEecchh------h--cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC---CCH
Confidence            55566777642   456544332211      1  147899999999999999999999999999999988753   244


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCc--EEecCeEEEeeCCCCChhhhhcc-ccc-ccCc
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGG  156 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~  156 (358)
                      .    +.+.+++.||+++++++++++.. +++++..+.+.   +|+  ++++|.||+|+|++|++++++.. +.+ ++|+
T Consensus       195 ~----l~~~l~~~gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~  269 (319)
T 3cty_A          195 A----YVQEIKKRNIPYIMNAQVTEIVG-DGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGY  269 (319)
T ss_dssp             H----HHHHHHHTTCCEECSEEEEEEEE-SSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSC
T ss_pred             H----HHHHHhcCCcEEEcCCeEEEEec-CCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCcc
Confidence            3    34556688999999999999986 34445555554   665  69999999999999999988754 555 5689


Q ss_pred             EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |.||++++|+.|+|||+|||+..+.         .++..|..||+.||.+|..
T Consensus       270 i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          270 IVVDSRQRTSVPGVYAAGDVTSGNF---------AQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             BCCCTTCBCSSTTEEECSTTBTTCC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCccCCCCEEEeecccCcch---------hhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998632         3577899999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.90  E-value=2e-23  Score=195.05  Aligned_cols=179  Identities=18%  Similarity=0.255  Sum_probs=138.6

Q ss_pred             CCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      .|+.+++||.+.   ++++++++.++.      .  ..+++++|||+|++|+|+|..|++.|.+||++++.+.+.   .+
T Consensus       113 ~~~~~~~~g~~~~~~~~~~~~~~~~~~------~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~  181 (311)
T 2q0l_A          113 SPKRTGIKGESEYWGKGVSTCATCDGF------F--YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CA  181 (311)
T ss_dssp             EECCCCCBTHHHHBTTTEESCHHHHGG------G--GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SC
T ss_pred             CCCCCCCCChhhccCCcEEEeecCChh------h--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CC
Confidence            345556777532   456655443321      1  157999999999999999999999999999999988763   35


Q ss_pred             HHHHHHHHHHHH-hCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCc--EEecCeEEEeeCCCCChhhhhcc-----cc
Q 018320           83 PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQ-----LT  151 (358)
Q Consensus        83 ~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~-----~~  151 (358)
                      +++    .+.+. +.||++++++.+++++.+ ++.+..+.+.   +|+  ++++|.|++++|++|++++++..     +.
T Consensus       182 ~~~----~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~  256 (311)
T 2q0l_A          182 PIT----LEHAKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCK  256 (311)
T ss_dssp             HHH----HHHHHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSC
T ss_pred             HHH----HHHHhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeE
Confidence            543    34444 479999999999999863 3444455554   665  79999999999999999988754     55


Q ss_pred             c-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          152 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       152 ~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      + ++|+|.||+++||+.|+|||+|||+..+.         .++..|..||+.||.+|..
T Consensus       257 ~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          257 CDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP---------KQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             BCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCEEeCCccccCCCCeEEcccccCcch---------HHHHHHHHhHHHHHHHHHH
Confidence            5 57899999999999999999999998631         4688899999999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.90  E-value=4.1e-23  Score=192.57  Aligned_cols=180  Identities=18%  Similarity=0.259  Sum_probs=141.0

Q ss_pred             CCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.+++||.+.   +.+++....+      ...  ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.   .+
T Consensus       117 ~~~~~~~~g~~~~~~~~~~~~~~~~------~~~--~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~---~~  185 (315)
T 3r9u_A          117 APKKAGFKGEDEFFGKGVSTCATCD------GFF--YKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR---AA  185 (315)
T ss_dssp             EECCCCCBTTTTTBTTTEESCHHHH------GGG--GTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB---SC
T ss_pred             CCCCCCCCChhhcCCCeEEeeeccc------ccc--cCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC---CC
Confidence            455666888764   5555432221      111  157999999999999999999999999999999988763   34


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC--CCc--EEecCeEEEeeCCCCChhhhhc-----cccc-
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSLFEG-----QLTL-  152 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~~~l~~~-----~~~~-  152 (358)
                      +++   +.+.+++.||++++++.+++++. +++.+..+.+.  +|+  ++++|.|++++|.+|++.++..     .+.. 
T Consensus       186 ~~~---~~~~~~~~gv~~~~~~~v~~i~~-~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~  261 (315)
T 3r9u_A          186 PST---VEKVKKNEKIELITSASVDEVYG-DKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNME  261 (315)
T ss_dssp             HHH---HHHHHHCTTEEEECSCEEEEEEE-ETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBC
T ss_pred             HHH---HHHHHhcCCeEEEeCcEEEEEEc-CCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeec
Confidence            443   34555789999999999999986 34455555554  775  7999999999999999998876     3555 


Q ss_pred             ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          153 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       153 ~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      ++|+|.||++++|+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       262 ~~g~i~vd~~~~t~~~~v~a~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          262 EGGQVSVDLKMQTSVAGLFAAGDLRKDAP---------KQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             TTSCBCCCTTCBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEeCCCcccCCCCEEEeecccCCch---------hhhhhHHhhHHHHHHHHHH
Confidence            56899999999999999999999986431         4678899999999999863

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.89  E-value=6.1e-23  Score=192.81  Aligned_cols=181  Identities=19%  Similarity=0.278  Sum_probs=141.2

Q ss_pred             CCCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccC
Q 018320            5 LKLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF   81 (358)
Q Consensus         5 ~~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~   81 (358)
                      ..|+.+++||.+.   ..+++  .+.+...+       ++++++|||+|.+|+|+|..|++.|.+|+++++.+++.+  .
T Consensus       124 ~~p~~~~~~g~~~~~g~~~~~--~~~~~~~~-------~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~  192 (332)
T 3lzw_A          124 FKPRKLELENAEQYEGKNLHY--FVDDLQKF-------AGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--H  192 (332)
T ss_dssp             CEECCCCCTTGGGGBTTTEES--SCSCGGGG-------BTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--C
T ss_pred             CCCCCCCCCChhhccCceEEE--ecCCHHHc-------CCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--c
Confidence            3677777888753   34443  33333222       579999999999999999999999999999999988754  2


Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-----CcEEecCeEEEeeCCCCChhhhhcc-cccccC
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKG  155 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g  155 (358)
                      ++.     .+.|++.||++++++.+++++.+++  ...+.+.+     ++++++|.||+++|++|++++++.. +..++|
T Consensus       193 ~~~-----~~~l~~~gv~~~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g  265 (332)
T 3lzw_A          193 EHS-----VENLHASKVNVLTPFVPAELIGEDK--IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKN  265 (332)
T ss_dssp             HHH-----HHHHHHSSCEEETTEEEEEEECSSS--CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETT
T ss_pred             HHH-----HHHHhcCCeEEEeCceeeEEecCCc--eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCC
Confidence            332     3447889999999999999986332  33455544     4579999999999999999987654 556789


Q ss_pred             cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      +|.||++++|+.|+|||+|||+..+..       ..++..|..||+.||.+|+..
T Consensus       266 ~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A~~~g~~aa~~i~~~  313 (332)
T 3lzw_A          266 SIVVKSTMETNIEGFFAAGDICTYEGK-------VNLIASGFGEAPTAVNNAKAY  313 (332)
T ss_dssp             EEECCTTSBCSSTTEEECGGGEECTTC-------CCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeCCCCceecCCEEEccceecCCCC-------cceEeeehhhHHHHHHHHHHh
Confidence            999999999999999999999975421       256889999999999998753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.89  E-value=6.4e-23  Score=193.41  Aligned_cols=155  Identities=19%  Similarity=0.225  Sum_probs=125.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC-cEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVV  118 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g-~v~  118 (358)
                      .+++++|||+|++|+|+|..|++.|.+|+++++.+.+..   .+.+   .++.+++.||++++++++++++.++++ .+.
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~  231 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLG  231 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEEEeCCCCcccee
Confidence            579999999999999999999999999999999887543   3322   224456789999999999999864321 444


Q ss_pred             EEEcC---CC--cEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEecc-ccCCCCcEEEEcccccccccccCcccccc
Q 018320          119 AVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLE  191 (358)
Q Consensus       119 ~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~~~  191 (358)
                      .+.+.   +|  +++++|.||+++|++|++++++..+.. ++|+|.||++ ++|+.|+|||+|||+..+.         .
T Consensus       232 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~---------~  302 (333)
T 1vdc_A          232 GLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY---------R  302 (333)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC---------C
T ss_pred             eEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCc---------h
Confidence            45554   45  579999999999999999988755655 5789999987 6899999999999998642         3


Q ss_pred             cHHHHHHHHHHHHHHHcC
Q 018320          192 HVDSARKSAKHAVAAIME  209 (358)
Q Consensus       192 ~~~~A~~~g~~aa~~i~g  209 (358)
                      .+..|..||+.||.+|..
T Consensus       303 ~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          303 QAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHH
Confidence            577899999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.88  E-value=1.7e-22  Score=188.79  Aligned_cols=180  Identities=26%  Similarity=0.346  Sum_probs=139.7

Q ss_pred             CccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320            7 LEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   83 (358)
Q Consensus         7 P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~   83 (358)
                      |..+++||.+.   +++++. ...+.     .  ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++   ++
T Consensus       125 ~~~~~i~g~~~~~~~~~~~~-~~~~~-----~--~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~  193 (323)
T 3f8d_A          125 RRKLGVPGEQEFAGRGISYC-SVADA-----P--LFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QP  193 (323)
T ss_dssp             ECCCCCTTTTTTBTTTEESC-HHHHG-----G--GGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CH
T ss_pred             CccCCCCchhhhcCCceEEe-ccCCH-----h--HcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CH
Confidence            55567888764   566542 11111     1  12579999999999999999999999999999999988765   33


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---Cc--EEecCeEEEeeCCCCChhhhhcc-ccc-ccCc
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGG  156 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~  156 (358)
                      ++   +++.+++.||++++++.+++++.+  +.+..+++.+   |+  ++++|.|++++|++|++++++.. +.. ++|+
T Consensus       194 ~~---~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~  268 (323)
T 3f8d_A          194 IY---VETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGY  268 (323)
T ss_dssp             HH---HHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSS
T ss_pred             HH---HHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCc
Confidence            32   233334559999999999999863  4455566654   76  79999999999999999887654 665 6799


Q ss_pred             EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |.||++++|+.|+|||+|||+..+.       ....+..|..||+.||.+|..
T Consensus       269 i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          269 IKVDEWMRTSVPGVFAAGDCTSAWL-------GFRQVITAVAQGAVAATSAYR  314 (323)
T ss_dssp             BCCCTTCBCSSTTEEECSTTBSTTT-------TCCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCceecCCCEEEcceecCCCC-------cccceeehhhHHHHHHHHHHH
Confidence            9999999999999999999998630       124688999999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.88  E-value=1.5e-22  Score=190.70  Aligned_cols=181  Identities=20%  Similarity=0.231  Sum_probs=138.7

Q ss_pred             CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|..+++||.+   ...+++...      ....+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++    
T Consensus       141 ~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~----  210 (338)
T 3itj_A          141 SAKRMHLPGEETYWQKGISACAV------CDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA----  210 (338)
T ss_dssp             EECCCCCTTHHHHBTTTEESCHH------HHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS----
T ss_pred             CcCCCCCCCchhccCccEEEchh------cccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC----
Confidence            35556677753   234543321      22221122579999999999999999999999999999999987655    


Q ss_pred             HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCC-----CcEEecCeEEEeeCCCCChhhhhccccc-ccC
Q 018320           83 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG  155 (358)
Q Consensus        83 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g  155 (358)
                         ...+.+.+.+. ||++++++.+++++. +++.+..+.+.+     ++++++|.||+++|++|++.+++..+.. ++|
T Consensus       211 ---~~~~~~~l~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G  286 (338)
T 3itj_A          211 ---STIMQKRAEKNEKIEILYNTVALEAKG-DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAG  286 (338)
T ss_dssp             ---CHHHHHHHHHCTTEEEECSEEEEEEEE-SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTS
T ss_pred             ---CHHHHHHHHhcCCeEEeecceeEEEEc-ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCC
Confidence               23344556554 999999999999987 344455566655     4679999999999999999988776666 578


Q ss_pred             cEEE-eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          156 GIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       156 ~i~v-d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      +|.+ |++++|+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       287 ~i~v~~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          287 YIKTVPGSSLTSVPGFFAAGDVQDSKY---------RQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             CBCCCTTSSBCSSTTEEECGGGGCSSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEcCcccccCCCCEEEeeccCCCCc---------cceeeehhhhHHHHHHHHH
Confidence            8885 8899999999999999997432         4577899999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.87  E-value=3.8e-22  Score=197.16  Aligned_cols=186  Identities=22%  Similarity=0.339  Sum_probs=138.5

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHH----------HhcCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCC
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNV----------MKSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEA   74 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~----------l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~   74 (358)
                      .|+.+++||.+.++|++...+-........          .....+++|+|||||++|+|+|..+.+.|.+ ||+++|.+
T Consensus       219 ~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          219 KARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             EECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            466778999988999864332221111100          0113579999999999999999999999985 99999988


Q ss_pred             cc-cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---------C---------CC--cEEecCeE
Q 018320           75 HC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---------R---------DG--NRLPTDMV  133 (358)
Q Consensus        75 ~~-l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---------~---------~g--~~i~~D~v  133 (358)
                      .. ++. .+.+     .+.+++.||++++++.++++..  ++++..+++         .         +|  .++++|.|
T Consensus       299 ~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~V  370 (456)
T 2vdc_G          299 RKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLV  370 (456)
T ss_dssp             STTCSS-CHHH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEE
T ss_pred             ccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEE
Confidence            76 664 3333     2457788999999999999874  343221211         1         23  46999999


Q ss_pred             EEeeCCCCChh--hhhcc-ccc-ccCcEEEecc-ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          134 VVGIGIRPNTS--LFEGQ-LTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       134 i~a~G~~p~~~--l~~~~-~~~-~~g~i~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      |+|+|++|++.  ++... +.+ ++|+|.||++ ++|+.|+|||+|||+..+          .++..|+.||+.||.+|.
T Consensus       371 i~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~  440 (456)
T 2vdc_G          371 IKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIH  440 (456)
T ss_dssp             EECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHH
Confidence            99999999876  55543 555 6789999997 999999999999998764          357789999999999987


Q ss_pred             C
Q 018320          209 E  209 (358)
Q Consensus       209 g  209 (358)
                      .
T Consensus       441 ~  441 (456)
T 2vdc_G          441 A  441 (456)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.87  E-value=2.8e-22  Score=185.30  Aligned_cols=171  Identities=19%  Similarity=0.119  Sum_probs=134.3

Q ss_pred             CCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320            6 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus         6 ~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +|+.+++||.+.   .++++... .+.      . ...+++++|||+|++|+|+|..|.+.| +|+++++.+..    ++
T Consensus       111 ~~~~~~~~g~~~~~~~~~~~~~~-~~~------~-~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~  177 (297)
T 3fbs_A          111 TDELPEIAGLRERWGSAVFHCPY-CHG------Y-ELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PD  177 (297)
T ss_dssp             EEECCCCBTTGGGBTTTEESCHH-HHT------G-GGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CC
T ss_pred             CCCCCCCCCchhhcCCeeEEccc-Ccc------h-hhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CC
Confidence            355556777653   45554321 111      1 125899999999999999999999999 99999987651    34


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccc---cC-cE
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLE---KG-GI  157 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~---~g-~i  157 (358)
                      +    .+.+.|++.||+++. +.+++++.  ++   .+.+.+|+++++|.|++++|++|++++++.. +..+   .| +|
T Consensus       178 ~----~~~~~l~~~gv~i~~-~~v~~i~~--~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i  247 (297)
T 3fbs_A          178 A----DQHALLAARGVRVET-TRIREIAG--HA---DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTI  247 (297)
T ss_dssp             H----HHHHHHHHTTCEEEC-SCEEEEET--TE---EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEE
T ss_pred             H----HHHHHHHHCCcEEEc-ceeeeeec--CC---eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceE
Confidence            3    346778889999996 89999974  22   5778899999999999999999999887654 5443   35 79


Q ss_pred             EEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          158 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       158 ~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .||++++|+.|+|||+|||+..+          ..+..|..||+.||.+|..
T Consensus       248 ~vd~~~~t~~~~vya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          248 VTDPMKQTTARGIFACGDVARPA----------GSVALAVGDGAMAGAAAHR  289 (297)
T ss_dssp             CCCTTCBCSSTTEEECSGGGCTT----------CCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCccCCCCEEEEeecCCch----------HHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999863          4578899999999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.86  E-value=1.5e-21  Score=189.92  Aligned_cols=187  Identities=20%  Similarity=0.248  Sum_probs=152.6

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcH-------------------------HHHHHH---
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY-------------------------IGMECA---   57 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~-------------------------~gle~A---   57 (358)
                      +|+.+++||.+. +++++.+.+++.++++.+.... ++++|||+|.                         +++|+|   
T Consensus       112 ~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~  189 (409)
T 3h8l_A          112 HLATELVKGWDK-YGYSVCEPEFATKLREKLESFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLML  189 (409)
T ss_dssp             EECGGGSBTHHH-HCEESSSTTHHHHHHHHHHHCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHH
T ss_pred             CcCccCCCChhh-cCcCcCCHHHHHHHHHHHHHhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHH
Confidence            455566888753 6788889999999998887643 5677999992                         577777   


Q ss_pred             -HHHHhCCC----cEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCe
Q 018320           58 -ASLVINKI----NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM  132 (358)
Q Consensus        58 -~~L~~~g~----~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~  132 (358)
                       ..|.+.|.    +|+++++.+ +++. +++++.+.+.+.+++.||+++++++|++++.  +    .+.+.+|+++++|.
T Consensus       190 ~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~  261 (409)
T 3h8l_A          190 HGYFKKKGMLDKVHVTVFSPGE-YLSD-LSPNSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADI  261 (409)
T ss_dssp             HHHHHTTTCTTTEEEEEECSSS-SSTT-BCHHHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSE
T ss_pred             HHHHHHcCCCCCeEEEEEeCCc-cccc-cCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeE
Confidence             45567784    899999988 6765 8999999999999999999999999999963  2    36788999999999


Q ss_pred             EEEeeCCCCChhhhhc--ccccccCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          133 VVVGIGIRPNTSLFEG--QLTLEKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       133 vi~a~G~~p~~~l~~~--~~~~~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      +++++|.+|+..+...  .+..++|+|.||+++|| +.|+|||+|||+..+.+        ..+..|..||+.||.||.+
T Consensus       262 vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~  333 (409)
T 3h8l_A          262 TILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLAN  333 (409)
T ss_dssp             EEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCccHHHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHH
Confidence            9999999999655444  24336788999999999 99999999999986432        4677899999999999976


Q ss_pred             C
Q 018320          210 P  210 (358)
Q Consensus       210 ~  210 (358)
                      .
T Consensus       334 ~  334 (409)
T 3h8l_A          334 R  334 (409)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.86  E-value=3.6e-22  Score=188.93  Aligned_cols=178  Identities=23%  Similarity=0.310  Sum_probs=133.6

Q ss_pred             CccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320            7 LEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   83 (358)
Q Consensus         7 P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~   83 (358)
                      |..+++||.+.   ..++++.+.++      .+.  .+++++|||+|++|+|+|..|++.|.+||++++.+.+..   ..
T Consensus       126 ~~~~~i~g~~~~~~~~~~~~~~~~~------~~~--~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~  194 (335)
T 2a87_A          126 ARYLQVPGEQELLGRGVSSCATCDG------FFF--RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SK  194 (335)
T ss_dssp             ECCCCCTHHHHTBTTTEESCHHHHG------GGG--TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CT
T ss_pred             ccCCCCCchHhccCCceEEeeccch------hhc--CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cH
Confidence            44556777531   34554333222      122  579999999999999999999999999999999887643   22


Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CC--cEEecCeEEEeeCCCCChhhhhccccc-ccCcE
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGI  157 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i  157 (358)
                      .+   ..+.+++.||++++++.+++++.+  +.+..+.+.   +|  +++++|.||+++|++|++++++..+.. ++|+|
T Consensus       195 ~~---~~~~~~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i  269 (335)
T 2a87_A          195 IM---LDRARNNDKIRFLTNHTVVAVDGD--TTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYV  269 (335)
T ss_dssp             TH---HHHHHHCTTEEEECSEEEEEEECS--SSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCB
T ss_pred             HH---HHHHhccCCcEEEeCceeEEEecC--CcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccE
Confidence            22   124456789999999999999853  222234333   44  579999999999999999988755665 57899


Q ss_pred             EEecc-ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          158 KVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       158 ~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .||++ ++|+.|+|||+|||+..+.         ..+..|..||+.||.+|..
T Consensus       270 ~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~~g~~aA~~i~~  313 (335)
T 2a87_A          270 LVQGRTTSTSLPGVFAAGDLVDRTY---------RQAVTAAGSGCAAAIDAER  313 (335)
T ss_dssp             CCSTTSSBCSSTTEEECGGGTCCSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCccCCCCEEEeeecCCccH---------HHHHHHHHhHHHHHHHHHH
Confidence            99985 6899999999999998642         3577899999999998863

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.86  E-value=1.4e-21  Score=196.20  Aligned_cols=178  Identities=25%  Similarity=0.378  Sum_probs=139.6

Q ss_pred             CccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320            7 LEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP   83 (358)
Q Consensus         7 P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~   83 (358)
                      |+.+++||.+   ..+++++...+.      ..  ..+++++|||||++|+|+|..|++.|.+||++++.+++..   + 
T Consensus       326 ~~~~~ipG~~~~~~~~v~~~~~~~~------~~--~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~-  393 (521)
T 1hyu_A          326 WRNMNVPGEDQYRTKGVTYCPHCDG------PL--FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D-  393 (521)
T ss_dssp             ECCCCCTTTTTTTTTTEECCTTCCG------GG--GBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C-
T ss_pred             cCCCCCCChhhhcCceEEEeecCch------hh--cCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C-
Confidence            4455677764   245665433211      11  1579999999999999999999999999999999887653   3 


Q ss_pred             HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCc--EEecCeEEEeeCCCCChhhhhccccc-ccCc
Q 018320           84 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGG  156 (358)
Q Consensus        84 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~  156 (358)
                         ..+.+.|++ .||++++++.++++.. +++++..+.+.   +|+  ++++|.|++++|++|+++++...+.+ ++|+
T Consensus       394 ---~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~  469 (521)
T 1hyu_A          394 ---QVLQDKVRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGE  469 (521)
T ss_dssp             ---HHHHHHHTTCTTEEEECSEEEEEEEE-CSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSC
T ss_pred             ---HHHHHHHhcCCCcEEEeCCEEEEEEc-CCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCc
Confidence               345566776 6999999999999986 34555556554   353  68999999999999999988765655 5789


Q ss_pred             EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |.||++++|+.|+|||+|||+..+.         ..+..|+.||+.||.+|..
T Consensus       470 I~Vd~~~~ts~p~VfA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          470 IIIDAKCETSVKGVFAAGDCTTVPY---------KQIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             BCCCTTCBCSSTTEEECSTTBCCSS---------CCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCCCCEEEeecccCCCc---------ceeeehHHhHHHHHHHHHH
Confidence            9999999999999999999998653         3577899999999998863

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.86  E-value=1e-20  Score=185.90  Aligned_cols=203  Identities=17%  Similarity=0.089  Sum_probs=150.2

Q ss_pred             CCccCCCCCCCC--CCeEEecCHHHHHHHHHHHhcC-CCCcEEEEcCcHH----H--HHHH----HHHHhCCCc-----E
Q 018320            6 KLEEFGLSGSDA--ENVCYLRDLADANRLVNVMKSC-SGGNAVVIGGGYI----G--MECA----ASLVINKIN-----V   67 (358)
Q Consensus         6 ~P~~~~ipG~~~--~~v~~l~~~~da~~i~~~l~~~-~~~~vvVIGgG~~----g--le~A----~~L~~~g~~-----V   67 (358)
                      +|+.+++||.+.  .+++.+.+++++.++.+.+... ++++++|||+|+.    |  +|+|    ..|.+.|.+     |
T Consensus       111 ~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~V  190 (437)
T 3sx6_A          111 KLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSF  190 (437)
T ss_dssp             EECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCE
T ss_pred             CcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEE
Confidence            566667899865  4778889999998887765432 2456788998553    4  7777    666778875     9


Q ss_pred             EEEeeCCcccCccC--CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-----CcEEecCeEEEeeCCC
Q 018320           68 TMVFPEAHCMARLF--TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIR  140 (358)
Q Consensus        68 tlv~~~~~~l~~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~a~G~~  140 (358)
                      |++++.+.+.+..+  .++....+++.|+++||++++++.|++++.  ++........+     ++++++|.+++++|.+
T Consensus       191 tlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~  268 (437)
T 3sx6_A          191 TFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFK  268 (437)
T ss_dssp             EEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEE
T ss_pred             EEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCc
Confidence            99999987733111  145788899999999999999999999973  32111112233     5679999999999999


Q ss_pred             CChhhhhc-ccccccCcEEEeccccC-CCCcEEEEcccccccccccCccc---ccccHHHHHHHHHHHHHHHcCCC
Q 018320          141 PNTSLFEG-QLTLEKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETR---RLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       141 p~~~l~~~-~~~~~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~---~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      |+..+.+. .+..++|+|.||+++|| +.|+|||+|||+..+... +.+.   ...++..|..||+.+|+||....
T Consensus       269 ~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l  343 (437)
T 3sx6_A          269 GVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADL  343 (437)
T ss_dssp             CCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            98776653 35447889999999999 999999999999876421 2111   23478899999999999998543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.86  E-value=8.3e-22  Score=195.00  Aligned_cols=192  Identities=14%  Similarity=0.180  Sum_probs=138.6

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHH-HH--HHh-cCCCCcEEEEcCcHHHHHHHHHHH--------------------h
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRL-VN--VMK-SCSGGNAVVIGGGYIGMECAASLV--------------------I   62 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i-~~--~l~-~~~~~~vvVIGgG~~gle~A~~L~--------------------~   62 (358)
                      |+.++|||.+.+++++.+++.....- .+  .+. ...+++++|||+|++|+|+|..|+                    +
T Consensus       107 ~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~  186 (460)
T 1cjc_A          107 HQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ  186 (460)
T ss_dssp             ECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred             CCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhh
Confidence            35578999988899986654221100 00  001 124789999999999999999999                    5


Q ss_pred             CCC-cEEEEeeCCcc--------------cCc--------cCC----------HH---HHHHHHHHHHh-----------
Q 018320           63 NKI-NVTMVFPEAHC--------------MAR--------LFT----------PK---IASYYEEYYKS-----------   95 (358)
Q Consensus        63 ~g~-~Vtlv~~~~~~--------------l~~--------~~~----------~~---~~~~~~~~l~~-----------   95 (358)
                      .|. +|++++|.+.+              ++.        .++          ..   +.+.+.+.+++           
T Consensus       187 ~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  266 (460)
T 1cjc_A          187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA  266 (460)
T ss_dssp             CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCC
Confidence            687 79999998765              221        011          10   23444455555           


Q ss_pred             ---CCCEEEcCCeeeEEEEcCCC-cEEEEEcC---------------CC--cEEecCeEEEeeCCCCChhhhhccc-cc-
Q 018320           96 ---KGVKFVKGTVLSSFDVDSNG-KVVAVNLR---------------DG--NRLPTDMVVVGIGIRPNTSLFEGQL-TL-  152 (358)
Q Consensus        96 ---~gV~v~~~~~v~~i~~~~~g-~v~~v~~~---------------~g--~~i~~D~vi~a~G~~p~~~l~~~~~-~~-  152 (358)
                         +||++++++.+++|..++++ ++..+++.               +|  ++++||+||+++|++|++ +  .++ .+ 
T Consensus       267 ~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d  343 (460)
T 1cjc_A          267 SASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFD  343 (460)
T ss_dssp             TCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCB
T ss_pred             CCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccc
Confidence               89999999999999864335 55555443               34  579999999999999998 3  345 55 


Q ss_pred             ccCcEEEeccccCC-CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          153 EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       153 ~~g~i~vd~~~~t~-~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      ++++|.+|+++||+ .|+|||+|||+..+.         ..+..|+.+|+.+|.+|++.
T Consensus       344 ~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~---------~~i~~a~~~g~~aa~~i~~~  393 (460)
T 1cjc_A          344 PKLGVVPNMEGRVVDVPGLYCSGWVKRGPT---------GVITTTMTDSFLTGQILLQD  393 (460)
T ss_dssp             TTTTBCCEETTEETTCTTEEECTHHHHCTT---------CCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeeECCCCcCcCCCCEEEEEeCCcCCC---------ccHHHHHHHHHHHHHHHHHH
Confidence            56889999999998 799999999997543         24667999999999998754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.85  E-value=3.2e-21  Score=184.20  Aligned_cols=164  Identities=13%  Similarity=0.180  Sum_probs=128.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------cCCHHHHHHHHHHHHhCC-CEEEcCCeeeEEEEc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIASYYEEYYKSKG-VKFVKGTVLSSFDVD  112 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~  112 (358)
                      ++++++|||+|++|+|+|..|++.|.+||++++.+.+++.      .+++...+.+.+.|++.| |++++++.|++++.+
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~  244 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFN  244 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEec
Confidence            5789999999999999999999999999999999887642      145777888999999997 999999999999753


Q ss_pred             CCCcEEEEEcCCCcEEe-cCeEEEeeCCCCChhhhhc-ccccccCcEEEecc-ccCCCCcEEEEcccccccccccCcccc
Q 018320          113 SNGKVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRR  189 (358)
Q Consensus       113 ~~g~v~~v~~~~g~~i~-~D~vi~a~G~~p~~~l~~~-~~~~~~g~i~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~  189 (358)
                      +++  ..+++.+|+++. +|.+|+++|++|+++++.. .+..++|+|.||++ ++|+.|+|||+|||+..+....     
T Consensus       245 ~~~--~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~-----  317 (369)
T 3d1c_A          245 NGQ--YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKL-----  317 (369)
T ss_dssp             TTE--EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCC-----
T ss_pred             CCc--eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeE-----
Confidence            332  457788887775 6999999999999966554 34445677999975 7789999999999998765422     


Q ss_pred             cccHHHHHHHHHHHHHHHcCCC
Q 018320          190 LEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       190 ~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                       +.+..+..||+.+|++|.+..
T Consensus       318 -~~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          318 -CYIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             -CSHHHHGGGHHHHHHHHHHHT
T ss_pred             -EEEehhhHHHHHHHHHHhccc
Confidence             345568889999999998754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.85  E-value=7.3e-22  Score=184.54  Aligned_cols=175  Identities=10%  Similarity=0.071  Sum_probs=130.4

Q ss_pred             CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeCCcccCccC
Q 018320            6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCMARLF   81 (358)
Q Consensus         6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~   81 (358)
                      +|+.+++||.+   ..++++....      ....  .++++++|||||. +++|+|..+.+.+.+||++++.+.+     
T Consensus       116 ~p~~p~i~G~~~~~~~~v~~~~~~------~~~~--~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~-----  182 (304)
T 4fk1_A          116 QEEFPSIPNVREYYGKSLFSCPYC------DGWE--LKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL-----  182 (304)
T ss_dssp             EEECCSCTTHHHHBTTTEESCHHH------HSGG--GTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC-----
T ss_pred             ccccccccCccccccceeeecccc------chhH--hcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc-----
Confidence            46667788854   2345533221      1111  1467788888775 5789999999999999999887653     


Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhc-cccc-ccCcEEE
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKV  159 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~-~~~~-~~g~i~v  159 (358)
                      .+    .+.+.|+++|++++.++ ++.+.. +++.+..+++.+|+++++|.+++++|.+|++.++.. ++++ ++|+|.|
T Consensus       183 ~~----~~~~~l~~~g~~~~~~~-v~~~~~-~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~v  256 (304)
T 4fk1_A          183 SQ----TIMDELSNKNIPVITES-IRTLQG-EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVI  256 (304)
T ss_dssp             CH----HHHHHHHTTTCCEECSC-EEEEES-GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCS
T ss_pred             hh----hhhhhhhccceeEeeee-EEEeec-CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEE
Confidence            22    34567888999999764 777764 455667789999999999999888877766665554 4776 6788999


Q ss_pred             eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          160 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       160 d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      |++||||+|+|||+|||+..+.         .++..|..||+.||..|.
T Consensus       257 d~~~~Ts~p~IyA~GDv~~~~~---------~~~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          257 DDFGRTSEKNIYLAGETTTQGP---------SSLIIAASQGNKAAIAIN  296 (304)
T ss_dssp             STTCBCSSTTEEECSHHHHTSC---------CCHHHHHHHHHHHHHHHH
T ss_pred             CcCCccCCCCEEEEeccCCCcc---------hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997542         346789999999998874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.85  E-value=1.3e-20  Score=202.91  Aligned_cols=179  Identities=22%  Similarity=0.315  Sum_probs=137.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC-cccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA-HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~-~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      +++|+|||||++|+|+|..+.++|. +||++++.+ ..++. +++++     +.+++.||++++++.++++.. +++++.
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~i~~-~~g~v~  404 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRKVIV-KGGRIV  404 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceEEEc-cCCeEE
Confidence            6799999999999999999999997 899999988 45554 55554     356788999999999999976 356665


Q ss_pred             EEEcC------CC---------cEEecCeEEEeeCCCC-Chhhhhc--cccc-ccCcEEEec-cccCCCCcEEEEccccc
Q 018320          119 AVNLR------DG---------NRLPTDMVVVGIGIRP-NTSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAA  178 (358)
Q Consensus       119 ~v~~~------~g---------~~i~~D~vi~a~G~~p-~~~l~~~--~~~~-~~g~i~vd~-~~~t~~~~VyAiGD~~~  178 (358)
                      .+++.      +|         .++++|.||+|+|++| +..++..  ++.+ ++|+|.||+ +++|+.|+|||+|||+.
T Consensus       405 ~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~  484 (1025)
T 1gte_A          405 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG  484 (1025)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGC
T ss_pred             EEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCC
Confidence            55442      22         3689999999999986 4666654  3666 578899997 89999999999999997


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHcCC------CCCCCCCCCCeEEE--EecCceEEEeec
Q 018320          179 FPLKLLGETRRLEHVDSARKSAKHAVAAIMEP------DKTDKFDYLPFFYS--RVFTLSWQFYGD  236 (358)
Q Consensus       179 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~------~~~~~~~~~p~~~~--~~~~~~~~~~G~  236 (358)
                      .+.          ++..|+.||+.||.+|.+.      .....++.+|++|.  ...+++..+.|.
T Consensus       485 ~~~----------~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G~  540 (1025)
T 1gte_A          485 MAN----------TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGL  540 (1025)
T ss_dssp             SCC----------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETTE
T ss_pred             Cch----------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeeccc
Confidence            542          5677999999999999741      11124567788776  445555555554

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.84  E-value=1.9e-21  Score=202.62  Aligned_cols=198  Identities=15%  Similarity=0.139  Sum_probs=147.4

Q ss_pred             CccCCCCCCC--CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEc--CcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-cC
Q 018320            7 LEEFGLSGSD--AENVCYLRDLADANRLVNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMAR-LF   81 (358)
Q Consensus         7 P~~~~ipG~~--~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIG--gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-~~   81 (358)
                      |..+++||.+  .+++++.   .++.+  .  ....+++|+|||  ||++|+|+|..|+++|.+||++++.+ +++. .+
T Consensus       499 p~~~~ipG~~~~~~~v~~~---~~~l~--~--~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~  570 (729)
T 1o94_A          499 LTHDPIPGADASLPDQLTP---EQVMD--G--KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHF  570 (729)
T ss_dssp             TTSSCCTTCCTTSTTEECH---HHHHH--C--CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHH
T ss_pred             ccCCCCCCccccCCCEEEH---HHHhc--C--CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccc
Confidence            5667799987  6788753   23221  1  122578999999  99999999999999999999999988 5542 12


Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cE------------------EecCeEEEeeCCCCC
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NR------------------LPTDMVVVGIGIRPN  142 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~------------------i~~D~vi~a~G~~p~  142 (358)
                      +.. ...+.+.|+++||++++++.+++++.  ++......+.++ ++                  +++|.||+++|.+|+
T Consensus       571 ~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          571 TLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             TTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             ccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            323 45677888999999999999999973  331111112333 33                  999999999999999


Q ss_pred             hhhhhcccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE
Q 018320          143 TSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFF  222 (358)
Q Consensus       143 ~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~  222 (358)
                      +++++... .     .+|++++|+.|+|||+|||+..           ..+..|+.||+.||.+|.+..   .+..+|+ 
T Consensus       648 ~~l~~~l~-~-----~vd~~~~t~~~~VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l---~~~~~p~-  706 (729)
T 1o94_A          648 CTLWNELK-A-----RESEWAENDIKGIYLIGDAEAP-----------RLIADATFTGHRVAREIEEAN---PQIAIPY-  706 (729)
T ss_dssp             CHHHHHHH-H-----TGGGTGGGTCCEEEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC---TTSCCCC-
T ss_pred             hHHHHHHh-h-----hcccccccCCCCeEEEeCccch-----------hhHHHHHHHHHHHHHHhhhhc---ccCCCCe-
Confidence            98876321 1     2578999999999999999863           246789999999999998754   3456677 


Q ss_pred             EEEecCceEEEeec
Q 018320          223 YSRVFTLSWQFYGD  236 (358)
Q Consensus       223 ~~~~~~~~~~~~G~  236 (358)
                      +...+++.++++|-
T Consensus       707 ~~~~~~~~~~~~~~  720 (729)
T 1o94_A          707 KRETIAWGTPHMPG  720 (729)
T ss_dssp             CCCCCCTTCCSSTT
T ss_pred             eeecccCcccccCC
Confidence            67888887776653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.84  E-value=4.8e-21  Score=185.73  Aligned_cols=195  Identities=18%  Similarity=0.129  Sum_probs=148.9

Q ss_pred             CCccCCCCCCC----CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcH-----------HHHHHHHHHHhCC--CcEE
Q 018320            6 KLEEFGLSGSD----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY-----------IGMECAASLVINK--INVT   68 (358)
Q Consensus         6 ~P~~~~ipG~~----~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~-----------~gle~A~~L~~~g--~~Vt   68 (358)
                      +|+.+++||.+    ...++++++.+++..+++.+........+|+++|.           +++++|..|++.+  .+|+
T Consensus       107 ~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~  186 (401)
T 3vrd_B          107 DLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVI  186 (401)
T ss_dssp             EECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             ccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEE
Confidence            45566778754    24667888999999999988766555555554332           4567777777665  6899


Q ss_pred             EEeeCCcccC-ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320           69 MVFPEAHCMA-RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus        69 lv~~~~~~l~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                      +++..+.+.. ..+++.+.+.+.+.+++.||+++++++++.++.+.++  ..+++.+|+++++|++++++|.+|+..+..
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~  264 (401)
T 3vrd_B          187 ILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQS  264 (401)
T ss_dssp             EECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHH
T ss_pred             EEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhh
Confidence            9998877632 2256777777777888999999999999999865444  357889999999999999999999865544


Q ss_pred             cccccccCcEEEecc-cc-CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          148 GQLTLEKGGIKVTGR-LQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       148 ~~~~~~~g~i~vd~~-~~-t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      ..+..++|+|.||++ || |++|+|||+|||+....       ...++..|.+||+++|+||+.
T Consensus       265 ~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~-------~pk~a~~A~~qa~v~A~ni~~  321 (401)
T 3vrd_B          265 ASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP-------MPKSAYSANSQAKVAAAAVVA  321 (401)
T ss_dssp             TTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT-------SCBSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCEEECCCcceecCCCCEEEecccccCCC-------CCchHHHHHHHHHHHHHHHHH
Confidence            556668899999987 55 79999999999986421       125678899999999999974

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.84  E-value=6.7e-21  Score=203.88  Aligned_cols=177  Identities=16%  Similarity=0.192  Sum_probs=141.0

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.+++||.+.++|++.+++.+..   +.....++++++|||+|++|+|+|..|++.|.+||++++.+.+++     . 
T Consensus       252 ~p~~~~ipG~~~~gv~~~~~~~~~l---~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-  322 (965)
T 2gag_A          252 HERPIVFENNDRPGIMLAGAVRSYL---NRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-  322 (965)
T ss_dssp             EECCCCCBTCCSTTEEEHHHHHHHH---HTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-
T ss_pred             ccCCCCCCCCCCCCEEEhHHHHHHH---HhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-
Confidence            3566779999999999765554321   111222568999999999999999999999999999999887543     1 


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-------C--cEEecCeEEEeeCCCCChhhhhcccccccCc
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG  156 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-------g--~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~  156 (358)
                          .+.+++.||++++++.+++++.++++.+..+++.+       |  +++++|.|++++|++|+++++..    .+++
T Consensus       323 ----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~----~~g~  394 (965)
T 2gag_A          323 ----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ----RQGK  394 (965)
T ss_dssp             ----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH----TTCC
T ss_pred             ----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh----CCCc
Confidence                45688999999999999999863245555666654       4  67999999999999999988753    2578


Q ss_pred             EEEecccc-----CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          157 IKVTGRLQ-----SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       157 i~vd~~~~-----t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      |.+|++++     |+.|+|||+|||+..+.           ...|..||+.||.+|++.
T Consensus       395 i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~~  442 (965)
T 2gag_A          395 LDWDTTIHAFVPADAVANQHLAGAMTGRLD-----------TASALSTGAATGAAAATA  442 (965)
T ss_dssp             EEEETTTTEEEECSCCTTEEECGGGGTCCS-----------HHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCcccccccCCCCCCEEEEEecCCchh-----------HHHHHHHHHHHHHHHHHH
Confidence            99999887     89999999999997642           347999999999999753

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.83  E-value=8.5e-22  Score=193.26  Aligned_cols=196  Identities=14%  Similarity=0.131  Sum_probs=141.2

Q ss_pred             CCCCCCCCCCeEEecCHHHHHHHHHHHhcC-CCCcEEEEcCcH------HHHHH----HHHHHhCC----CcEEEEeeCC
Q 018320           10 FGLSGSDAENVCYLRDLADANRLVNVMKSC-SGGNAVVIGGGY------IGMEC----AASLVINK----INVTMVFPEA   74 (358)
Q Consensus        10 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~-~~~~vvVIGgG~------~gle~----A~~L~~~g----~~Vtlv~~~~   74 (358)
                      +++||.+ ++++++++++|+.++++.+.+. ..+.++|+|++.      .+.|+    +..|.++|    .+|++++..+
T Consensus       111 ~~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~  189 (430)
T 3hyw_A          111 FGAEGQE-ENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEP  189 (430)
T ss_dssp             CCSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSS
T ss_pred             CCccCcc-cCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccc
Confidence            5688875 5788899999999998877543 234556666542      22333    34455555    4789998877


Q ss_pred             cccC--ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChhhhhccc
Q 018320           75 HCMA--RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQL  150 (358)
Q Consensus        75 ~~l~--~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~~~~  150 (358)
                      .+.+  ...++...+.+++.|+++||++++++.|++++.  + .+ .++..+|  +++++|++++++|.+|+..+.....
T Consensus       190 ~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~-~~-~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~  265 (430)
T 3hyw_A          190 YLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--D-KV-IYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGD  265 (430)
T ss_dssp             STTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--S-EE-EEECTTSCEEEEECSEEEEECEEECCHHHHTTCT
T ss_pred             hhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--C-ce-EEEeeCCCceEeecceEEEeccCCCchHHHhccc
Confidence            5432  224567788899999999999999999999963  2 22 3444444  5799999999999999866555443


Q ss_pred             --cc-ccCcEEEecccc-CCCCcEEEEcccccccccccCccc---ccccHHHHHHHHHHHHHHHcCCC
Q 018320          151 --TL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETR---RLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       151 --~~-~~g~i~vd~~~~-t~~~~VyAiGD~~~~~~~~~g~~~---~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                        .. .++.|.||++|| |++|+|||+|||+..+... +.+.   ...+++.|.+||+.+|+||+...
T Consensus       266 ~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~-~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l  332 (430)
T 3hyw_A          266 KVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIE-KTPIPTGVPKTGMMIEQMAMAVAHNIVNDI  332 (430)
T ss_dssp             TTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSS-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEecccccCCCCCCEEEeccEEecCCcc-cCcCcCccchHHHHHHHHHHHHHHHHHHHh
Confidence              33 456799999999 7999999999999876432 1111   23567899999999999998543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.83  E-value=8.8e-21  Score=187.42  Aligned_cols=189  Identities=22%  Similarity=0.273  Sum_probs=135.6

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHH-HH---HHHhcCCCCcEEEEcCcHHHHHHHHHHHhC-------------------
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANR-LV---NVMKSCSGGNAVVIGGGYIGMECAASLVIN-------------------   63 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~-i~---~~l~~~~~~~vvVIGgG~~gle~A~~L~~~-------------------   63 (358)
                      |+.+++||.+.+++++.+++..... ..   ..+....+++++|||+|++|+|+|..|++.                   
T Consensus       109 ~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~  188 (456)
T 1lqt_A          109 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP  188 (456)
T ss_dssp             ECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHH
Confidence            5667899998889987654421100 00   011112578999999999999999999974                   


Q ss_pred             -C-CcEEEEeeCCcccCccCCH-------------------HH------------------HHHHHHHHHh------CCC
Q 018320           64 -K-INVTMVFPEAHCMARLFTP-------------------KI------------------ASYYEEYYKS------KGV   98 (358)
Q Consensus        64 -g-~~Vtlv~~~~~~l~~~~~~-------------------~~------------------~~~~~~~l~~------~gV   98 (358)
                       | .+|++++|.+.+... |++                   ++                  .+.+.+.+++      +||
T Consensus       189 ~g~~~V~lv~r~~~~~~~-f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv  267 (456)
T 1lqt_A          189 RGIQEVVIVGRRGPLQAA-FTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRM  267 (456)
T ss_dssp             CCCCEEEEECSSCGGGCC-CCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEE
T ss_pred             CCCcEEEEEecCChhhhc-cChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceE
Confidence             5 499999998876543 221                   11                  2344455555      799


Q ss_pred             EEEcCCeeeEEEEcCCCcEEEEEcC----------------CC--cEEecCeEEEeeCCCCChhhhhccccc-ccCcEEE
Q 018320           99 KFVKGTVLSSFDVDSNGKVVAVNLR----------------DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKV  159 (358)
Q Consensus        99 ~v~~~~~v~~i~~~~~g~v~~v~~~----------------~g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~v  159 (358)
                      ++++++.+++|..+  +.+..+++.                +|  ++++||+|++++|++|++ +  ..+.+ ++++|.+
T Consensus       268 ~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~v  342 (456)
T 1lqt_A          268 VFRFLTSPIEIKGK--RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIP  342 (456)
T ss_dssp             EEECSEEEEEEECS--SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCC
T ss_pred             EEEeCCCCeEEecC--CcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeE
Confidence            99999999999853  433334332                34  469999999999999998 3  23555 5688999


Q ss_pred             ecccc-CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          160 TGRLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       160 d~~~~-t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      |++++ |+.|+|||+|||+..+..         .+..|+.||+.+|.+|++.
T Consensus       343 n~~~rvt~~pgvya~GD~~~gp~~---------~i~~a~~~g~~~a~~i~~~  385 (456)
T 1lqt_A          343 NVGGRINGSPNEYVVGWIKRGPTG---------VIGTNKKDAQDTVDTLIKN  385 (456)
T ss_dssp             EETTEETTCSSEEECTHHHHCSCS---------CTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCEEEEeccCCCCch---------hHHHHHHHHHHHHHHHHHH
Confidence            99999 899999999999975432         3446889999999998753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=1.7e-20  Score=177.43  Aligned_cols=155  Identities=22%  Similarity=0.300  Sum_probs=115.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-CcccCccC-CHHHHHHHHHHHH-----------------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLF-TPKIASYYEEYYK-----------------------   94 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~l~~~~-~~~~~~~~~~~l~-----------------------   94 (358)
                      ++++++|||+|++|+|+|..|++.| +||++.+. +.+++..+ +.++.+.+.+.+.                       
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPP  240 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCCHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChh
Confidence            5799999999999999999999998 69999987 56655432 2344333333332                       


Q ss_pred             -----hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecc--ccCC
Q 018320           95 -----SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGR--LQSS  166 (358)
Q Consensus        95 -----~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~--~~t~  166 (358)
                           +.|+ +.....+++++.  +    .+.+.+|+++++|.||+++|++|++++++.. +..++|+|.||++  ++|+
T Consensus       241 ~~~~~~~g~-i~~~~~v~~~~~--~----~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~  313 (357)
T 4a9w_A          241 VLDARARGV-LAAVPPPARFSP--T----GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALA  313 (357)
T ss_dssp             HHHHHHTTC-CCEECCCSEEET--T----EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSS
T ss_pred             HHHHHhcCc-eEEecCcceEeC--C----eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCccccCCcccCCC
Confidence                 3444 445566777753  2    4788999999999999999999999988764 5557789999999  9999


Q ss_pred             CCcEEEEc--ccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          167 NSSVYAVG--DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       167 ~~~VyAiG--D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      .|+|||+|  ||+....         ..+..|..||+.+|.+|....
T Consensus       314 ~~~vya~Gd~d~~~~~~---------~~~~~A~~~g~~~a~~i~~~l  351 (357)
T 4a9w_A          314 VPSVWLLGYGDWNGMAS---------ATLIGVTRYAREAVRQVTAYC  351 (357)
T ss_dssp             CTTEEECSSCGGGSTTC---------SSTTTHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEeccccccccch---------hhhhhhHHHHHHHHHHHHHHH
Confidence            99999999  5554221         234458899999999987543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.79  E-value=2.2e-19  Score=186.10  Aligned_cols=174  Identities=19%  Similarity=0.141  Sum_probs=135.2

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEc--CcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIG--gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      |..+++||.+.+++++.   .+...   . ....+++++|||  +|++|+|+|..|.+.|.+||++++.+.+++...++.
T Consensus       496 ~~~~~i~G~~~~~v~~~---~~~l~---~-~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~  568 (690)
T 3k30_A          496 FHTTALPIAEGMQVLGP---DDLFA---G-RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTF  568 (690)
T ss_dssp             SCSSCCCBCTTSEEECH---HHHHT---T-CCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGT
T ss_pred             cCCCCCCCCCCCcEEcH---HHHhC---C-CCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccch
Confidence            55667899887777643   22221   1 222568899999  999999999999999999999999998877644466


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE---cCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEec
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG  161 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~  161 (358)
                      ....+.+.|++.||+++++++|++++.  ++.  .+.   ..+++++++|.||+|+|++|+++++.....  .+.     
T Consensus       569 ~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~--~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~--~~~-----  637 (690)
T 3k30_A          569 EVNRIQRRLIENGVARVTDHAVVAVGA--GGV--TVRDTYASIERELECDAVVMVTARLPREELYLDLVA--RRD-----  637 (690)
T ss_dssp             CHHHHHHHHHHTTCEEEESEEEEEEET--TEE--EEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH--HHH-----
T ss_pred             hHHHHHHHHHHCCCEEEcCcEEEEEEC--CeE--EEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh--hhc-----
Confidence            678888999999999999999999974  331  222   235568999999999999999998764211  111     


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                        +|+.|+||++|||+...           .+..|+.||+.||.+|.+..
T Consensus       638 --~t~~~~VyaiGD~~~~~-----------~~~~A~~~g~~aa~~i~~~l  674 (690)
T 3k30_A          638 --AGEIASVRGIGDAWAPG-----------TIAAAVWSGRRAAEEFDAVL  674 (690)
T ss_dssp             --HTSCSEEEECGGGTSCB-----------CHHHHHHHHHHHHHHTTCCC
T ss_pred             --ccCCCCEEEEeCCCchh-----------hHHHHHHHHHHHHHHHHhhc
Confidence              78999999999999753           45679999999999998864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.77  E-value=1.2e-18  Score=172.54  Aligned_cols=170  Identities=12%  Similarity=0.079  Sum_probs=127.8

Q ss_pred             CCCCCCccCCCCCCCC-CC-eEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320            2 NMALKLEEFGLSGSDA-EN-VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus         2 ~~~~~P~~~~ipG~~~-~~-v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      |...+|+.+++||.+. ++ +++..++.+..       ...+|+|+|||+|++|+|+|..|++.|.+||++++.+.+++.
T Consensus       163 G~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~  235 (464)
T 2xve_A          163 GHFSTPYVPEFEGFEKFGGRILHAHDFRDAL-------EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY  235 (464)
T ss_dssp             CSSSSBCCCCCBTTTTCCSEEEEGGGCCCGG-------GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC
T ss_pred             CCCCCCccCCCCCcccCCceEEehhhhCCHh-------HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC
Confidence            4335666667888753 33 44433332221       125899999999999999999999999999999999887764


Q ss_pred             cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc--cccccC-c
Q 018320           80 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ--LTLEKG-G  156 (358)
Q Consensus        80 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~--~~~~~g-~  156 (358)
                      .+             ..||+++  ..|++++.  +    .+.+.||+++++|.||+|+|++|+++++...  +..+++ .
T Consensus       236 ~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~  294 (464)
T 2xve_A          236 KW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLW  294 (464)
T ss_dssp             CC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSC
T ss_pred             CC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcc
Confidence            32             2478887  67888852  2    4778899999999999999999999987652  444444 4


Q ss_pred             EEEec---cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          157 IKVTG---RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       157 i~vd~---~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      + ++.   .++|+.|+||++|||...           ..+..|..||+.++.+|.|..
T Consensus       295 v-~~~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          295 P-LNLYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             C-SSEETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHHHHHTTSS
T ss_pred             c-ccccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHHHHHcCCC
Confidence            4 333   367899999999998763           246678999999999998864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.74  E-value=3.8e-18  Score=176.31  Aligned_cols=167  Identities=23%  Similarity=0.250  Sum_probs=129.1

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC--------------------
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--------------------   65 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~--------------------   65 (358)
                      +|+.+++||.+.+++++..   +.  +..  ....+++|+|||||++|+|+|..|++.|.                    
T Consensus       466 ~p~~~~i~G~~~~~v~~~~---~~--l~~--~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~  538 (671)
T 1ps9_A          466 VPRTPPIDGIDHPKVLSYL---DV--LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQ  538 (671)
T ss_dssp             EECCCCCBTTTSTTEEEHH---HH--HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCC
T ss_pred             CcCCCCCCCCCCCcEeeHH---HH--hhC--CCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhccccccc
Confidence            4666778998777888642   21  111  12257999999999999999999998873                    


Q ss_pred             -----------------cEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--c
Q 018320           66 -----------------NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--N  126 (358)
Q Consensus        66 -----------------~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~  126 (358)
                                       +|+++++.+..+...+++.....+.+.|+++||++++++++++++.  ++ + .++ .+|  +
T Consensus       539 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~  613 (671)
T 1ps9_A          539 QAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQ  613 (671)
T ss_dssp             SGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEE
T ss_pred             ccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEE
Confidence                             5677877776666557888888888999999999999999999973  33 2 232 567  6


Q ss_pred             EEecCeEEEeeCCCCChhhhhcccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHH
Q 018320          127 RLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  206 (358)
Q Consensus       127 ~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  206 (358)
                      ++++|.||+++|++|++++++.              ++...++||++|||+....         ..+..|++||+.+|.+
T Consensus       614 ~i~~D~Vi~a~G~~p~~~l~~~--------------l~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~  670 (671)
T 1ps9_A          614 VLAVDNVVICAGQEPNRALAQP--------------LIDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALE  670 (671)
T ss_dssp             EECCSEEEECCCEEECCTTHHH--------------HHTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHH
T ss_pred             EEeCCEEEECCCccccHHHHHH--------------HHhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHh
Confidence            7999999999999999988753              2233478999999988643         2478899999999988


Q ss_pred             H
Q 018320          207 I  207 (358)
Q Consensus       207 i  207 (358)
                      |
T Consensus       671 i  671 (671)
T 1ps9_A          671 I  671 (671)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.74  E-value=7e-18  Score=168.23  Aligned_cols=154  Identities=16%  Similarity=0.111  Sum_probs=122.4

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      .|..+++||.+.+++++..   ++..+.+.....++++++|||+|++|+|                              
T Consensus       218 ~~~~~~~~g~~~~gv~~~~---~~~~~~~~~~~~~~~~vvViGgG~~gle------------------------------  264 (493)
T 1y56_A          218 IDSTMLFENNDMPGVFRRD---FALEVMNVWEVAPGRKVAVTGSKADEVI------------------------------  264 (493)
T ss_dssp             EECCCCCTTTTSTTEEEHH---HHHHHHHTSCBCSCSEEEEESTTHHHHH------------------------------
T ss_pred             CccCCCCCCCCCCCEEEcH---HHHHHHHhcccCCCCEEEEECCCHHHHH------------------------------
Confidence            3555678999999998753   4444444333345799999999999998                              


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc---ccCcEE-Ee
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL---EKGGIK-VT  160 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~---~~g~i~-vd  160 (358)
                           +.+++.||++++++.|++++.  ++.+..+.+.+|+++++|.||+++|.+|++++++.. +..   ++|+|. ||
T Consensus       265 -----~~l~~~GV~v~~~~~v~~i~~--~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd  337 (493)
T 1y56_A          265 -----QELERWGIDYVHIPNVKRVEG--NEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLD  337 (493)
T ss_dssp             -----HHHHHHTCEEEECSSEEEEEC--SSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCC
T ss_pred             -----HHHHhCCcEEEeCCeeEEEec--CCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccc
Confidence                 456778999999999999985  334456778889999999999999999999887654 433   366777 89


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      ++++ +.|+|||+|||+..           .++..|..||+.||.+|.+..
T Consensus       338 ~~~~-s~~~vya~GD~~~~-----------~~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          338 EYHR-IKDGIYVAGSAVSI-----------KPHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             TTSE-EETTEEECSTTTCC-----------CCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccC-cCCCEEEEeccCCc-----------cCHHHHHHHHHHHHHHHHHHc
Confidence            9999 99999999999975           357789999999999998643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.72  E-value=2.4e-17  Score=162.64  Aligned_cols=160  Identities=16%  Similarity=0.130  Sum_probs=112.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCcc-------------------CCHHHHHHHHHHHHh---
Q 018320           40 SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL-------------------FTPKIASYYEEYYKS---   95 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~-------------------~~~~~~~~~~~~l~~---   95 (358)
                      ++++|+|||||.+|+|+|..|.+.  +.+||+++|.+.+++..                   ++++....+.+.+..   
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  305 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNY  305 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTS
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCC
Confidence            478999999999999999999999  99999999998775521                   122222222222222   


Q ss_pred             -----------------------CCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCcE--EecCeEEEeeCCCCC--hhh
Q 018320           96 -----------------------KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNR--LPTDMVVVGIGIRPN--TSL  145 (358)
Q Consensus        96 -----------------------~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~--i~~D~vi~a~G~~p~--~~l  145 (358)
                                             .||++++++.|++++.++++  ..+.+.   +|+.  +++|.||+|+|++|+  .++
T Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~  383 (463)
T 3s5w_A          306 SVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG--IELALRDAGSGELSVETYDAVILATGYERQLHRQL  383 (463)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE--EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTT
T ss_pred             CcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE--EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccch
Confidence                                   69999999999999874433  345544   6654  999999999999999  555


Q ss_pred             hhcccccccCcEEEeccccCC-----CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320          146 FEGQLTLEKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       146 ~~~~~~~~~g~i~vd~~~~t~-----~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  207 (358)
                      +....... |+|.||+++++.     .|+|||+|||.......  .+   .+...|.+++++++..+
T Consensus       384 l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~--~~---~l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          384 LEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLS--DT---LLSVLPVRAEEISGSLY  444 (463)
T ss_dssp             TGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTT--TT---SSTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCcccCCcC--cc---chhHHHHHHHHHHHHHH
Confidence            55432112 889999999974     46799999998754321  11   23446778888776654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.71  E-value=4.7e-17  Score=146.30  Aligned_cols=154  Identities=14%  Similarity=0.179  Sum_probs=111.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-----------------ccCccC-------CHHHHHHHHHHHHhC-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------------CMARLF-------TPKIASYYEEYYKSK-   96 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-----------------~l~~~~-------~~~~~~~~~~~l~~~-   96 (358)
                      .+|+|||||++|+++|..|++.|.+|+++++...                 +... +       ..++...+.+.+++. 
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~~~~~l~~~~~~~~   82 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLER-AYDPKDERVWAFHARAKYLLEGLR   82 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHH-HCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhh-hccCCCCCHHHHHHHHHHHHHcCC
Confidence            5799999999999999999999999999998721                 1111 1       136667788888887 


Q ss_pred             CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh--------------------hhhh----ccccc
Q 018320           97 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT--------------------SLFE----GQLTL  152 (358)
Q Consensus        97 gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~--------------------~l~~----~~~~~  152 (358)
                      |++++ +++|+++.. +++.+..+.+.+|+++++|.||+|+|..++.                    .+.+    ..+..
T Consensus        83 gv~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~  160 (232)
T 2cul_A           83 PLHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRF  160 (232)
T ss_dssp             TEEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCE
T ss_pred             CcEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeE
Confidence            99999 568999986 3455556788888899999999999985442                    2222    11111


Q ss_pred             ccCc----------------EEEec-------cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          153 EKGG----------------IKVTG-------RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       153 ~~g~----------------i~vd~-------~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      ..+.                ..+..       ...|++|+|||+|||+ ..          .....|+.||+.+|.+|+.
T Consensus       161 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          161 VEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHH
T ss_pred             EccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHh
Confidence            1100                00110       1227999999999999 53          2567889999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.70  E-value=1.9e-17  Score=163.00  Aligned_cols=170  Identities=12%  Similarity=0.086  Sum_probs=125.2

Q ss_pred             CCCCCCccCCCCCCCC------CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCC
Q 018320            2 NMALKLEEFGLSGSDA------ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEA   74 (358)
Q Consensus         2 ~~~~~P~~~~ipG~~~------~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~   74 (358)
                      |...+|+.+++||.+.      ..+++.+++.+...+       .+++|+|||+|++|+|+|..|++.|.+ ||++++.+
T Consensus       174 G~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~-------~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          174 GHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             CSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCCCCCCCCCCCChhhhhccCCccEEEecccCChhhc-------CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            3334666667888641      236665554443222       579999999999999999999999999 99999987


Q ss_pred             cccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE-EecCeEEEeeCCCCChhh-----hhc
Q 018320           75 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSL-----FEG  148 (358)
Q Consensus        75 ~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~~~l-----~~~  148 (358)
                      .+                +++.||.+  ...|++++. +++   .|.+.||++ +++|.||+|+|++|++++     ++.
T Consensus       247 ~~----------------l~~~~i~~--~~~v~~~~~-~~~---~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~  304 (447)
T 2gv8_A          247 GD----------------IQNESLQQ--VPEITKFDP-TTR---EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKS  304 (447)
T ss_dssp             CS----------------CBCSSEEE--ECCEEEEET-TTT---EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCS
T ss_pred             Cc----------------CCCCCeEE--ecCeEEEec-CCC---EEEECCCCEeccCCEEEECCCCCcCCCCCccccccc
Confidence            65                34457775  467888863 222   577889976 799999999999999988     554


Q ss_pred             c-ccc-ccCcEEEecccc---CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          149 Q-LTL-EKGGIKVTGRLQ---SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       149 ~-~~~-~~g~i~vd~~~~---t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      . ... .++.+.++.+.+   +++|++|++||+....           .+..|..||+.+|.+|.|..
T Consensus       305 ~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-----------~~~~a~~qa~~~a~~~~g~~  361 (447)
T 2gv8_A          305 PETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV-----------PFPTSQAQAAFLARVWSGRL  361 (447)
T ss_dssp             TTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             ccCceecCCCcccccccccccCCCCcEEEEecccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence            2 111 244555555555   6899999999997642           46678999999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.49  E-value=2.9e-14  Score=143.57  Aligned_cols=181  Identities=17%  Similarity=0.212  Sum_probs=116.3

Q ss_pred             CCCccCCCCCCCC-CC-eEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-cCc--
Q 018320            5 LKLEEFGLSGSDA-EN-VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MAR--   79 (358)
Q Consensus         5 ~~P~~~~ipG~~~-~~-v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-l~~--   79 (358)
                      -+|..+++||.+. .+ +++.....+.       ....+|+|+|||+|.+|+|+|..|++.+.+||+++|.+++ ++.  
T Consensus       147 s~p~~p~ipG~~~f~g~~~~~~~~~~~-------~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~  219 (540)
T 3gwf_A          147 SAINFPNLPGLDTFEGETIHTAAWPEG-------KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGN  219 (540)
T ss_dssp             CSBCCCCCTTGGGCCSEEEEGGGCCSS-------CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCC
T ss_pred             ccCCCCCCCCccccCCCEEEeecCCCc-------cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcc
Confidence            3566667888652 22 2332222111       1236899999999999999999999999999999999883 332  


Q ss_pred             -cCCHHHHHHHH--------------------------------------------------------------------
Q 018320           80 -LFTPKIASYYE--------------------------------------------------------------------   90 (358)
Q Consensus        80 -~~~~~~~~~~~--------------------------------------------------------------------   90 (358)
                       .+++...+.++                                                                    
T Consensus       220 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (540)
T 3gwf_A          220 RPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAA  299 (540)
T ss_dssp             CBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHH
Confidence             12222221111                                                                    


Q ss_pred             -----HH---------------------------------HHhCCCEEEc--CCeeeEEEEcCCCcEEEEEcCCCcEEec
Q 018320           91 -----EY---------------------------------YKSKGVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLPT  130 (358)
Q Consensus        91 -----~~---------------------------------l~~~gV~v~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~~  130 (358)
                           +.                                 |.+.+|+++.  +..|++|+.  +    .|.+.||+++++
T Consensus       300 ~~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~--~----gv~~~dG~~~~~  373 (540)
T 3gwf_A          300 ASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA--K----GVVTEDGVLHEL  373 (540)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS--S----EEEETTCCEEEC
T ss_pred             HHHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec--C----eEEcCCCCEEEC
Confidence                 00                                 1134788885  678888863  3    477899999999


Q ss_pred             CeEEEeeCCCCChhhhhcccccccCcEEEecc----------ccC-CCCcEEEE-cccccccccccCcccccccHHHHHH
Q 018320          131 DMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR----------LQS-SNSSVYAV-GDVAAFPLKLLGETRRLEHVDSARK  198 (358)
Q Consensus       131 D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~----------~~t-~~~~VyAi-GD~~~~~~~~~g~~~~~~~~~~A~~  198 (358)
                      |.||+|||+++++.++...-....+++.+++.          +.+ +.||+|.+ |..+...          .....+..
T Consensus       374 DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~----------s~~~~~e~  443 (540)
T 3gwf_A          374 DVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFT----------NLPPSIET  443 (540)
T ss_dssp             SEEEECCCBSCSSHHHHTSEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCS----------CHHHHHHH
T ss_pred             CEEEECCccCccccCcCcceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCc----------cHHHHHHH
Confidence            99999999999986543221111223333322          222 78999999 7765411          23446677


Q ss_pred             HHHHHHHHHc
Q 018320          199 SAKHAVAAIM  208 (358)
Q Consensus       199 ~g~~aa~~i~  208 (358)
                      |++++++.|.
T Consensus       444 q~~~i~~~i~  453 (540)
T 3gwf_A          444 QVEWISDTIG  453 (540)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.48  E-value=1.1e-13  Score=128.10  Aligned_cols=165  Identities=15%  Similarity=0.137  Sum_probs=115.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccCc------------------------------------c-CCH
Q 018320           42 GNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR------------------------------------L-FTP   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~~------------------------------------~-~~~   83 (358)
                      .+|+|||||++|+++|..|++. |.+|+|+++.+.+...                                    . ...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 9999999998754211                                    0 123


Q ss_pred             HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----cEEecCeEEEeeCCCCChhh---
Q 018320           84 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----NRLPTDMVVVGIGIRPNTSL---  145 (358)
Q Consensus        84 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----~~i~~D~vi~a~G~~p~~~l---  145 (358)
                      ++...+.+.+.+ .||+++++++|+++.. +++.+..+.+.         +|     .++++|.||+|+|..++...   
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            455556666655 6999999999999986 34555445442         22     57999999999998876531   


Q ss_pred             --hhc-c--ccc-ccCcEEEec-------cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          146 --FEG-Q--LTL-EKGGIKVTG-------RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       146 --~~~-~--~~~-~~g~i~vd~-------~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                        +.. .  +.. ...++.++.       ..+++.|++|++||++..   .+|.++..+.+..+..+|+.+|.++...
T Consensus       199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~---~~g~~~~gp~~~~~~~sG~~~a~~i~~~  273 (284)
T 1rp0_A          199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAE---IDGAPRMGPTFGAMMISGQKAGQLALKA  273 (284)
T ss_dssp             HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHH---HHTCEECCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhh---hcCCCCcChHHHHHHHhHHHHHHHHHHH
Confidence              110 0  111 122333332       345678999999998653   2344555566778889999999998753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.31  E-value=1.4e-12  Score=131.35  Aligned_cols=97  Identities=9%  Similarity=0.107  Sum_probs=61.7

Q ss_pred             CCEEEc--CCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEecc-----------
Q 018320           97 GVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR-----------  162 (358)
Q Consensus        97 gV~v~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~-----------  162 (358)
                      +|+++.  +..|++|+.  +    .|.+.|| ++++|.||+|||+.+++.++... .. ..++..+++.           
T Consensus       352 nV~lv~~~~~~I~~it~--~----gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~-~i~g~~G~~l~~~w~~~~~~y~g~  423 (545)
T 3uox_A          352 NVHLVDIREAPIQEVTP--E----GIKTADA-AYDLDVIIYATGFDAVTGSLDRI-DIRGKDNVRLIDAWAEGPSTYLGL  423 (545)
T ss_dssp             TEEEEETTTSCEEEEET--T----EEEESSC-EEECSEEEECCCCBSSSCSCTTS-EEECGGGCBHHHHTTTSCCCBTTT
T ss_pred             CEEEEecCCCCceEEcc--C----eEEeCCC-eeecCEEEECCccccccccCCCc-eEECCCCccHHHhhccccceeecc
Confidence            788885  678888873  3    4778999 99999999999999876544321 11 2233334332           


Q ss_pred             ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          163 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       163 ~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      +-.+.||+|.+.--....    +.   ......+..|++.+++.|.
T Consensus       424 ~~~gfPN~f~~~gp~~~~----~~---~s~~~~~e~~~~~i~~~i~  462 (545)
T 3uox_A          424 QARGFPNFFTLVGPHNGS----TF---CNVGVCGGLQAEWVLRMIS  462 (545)
T ss_dssp             BCTTCTTEEECSSGGGTG----GG---SCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEeCCCCCC----cc---ccHHHHHHHHHHHHHHHHH
Confidence            223789999984322110    00   0234456778888888764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.30  E-value=1.7e-12  Score=130.77  Aligned_cols=97  Identities=12%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             CCEEE--cCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEecccc----------
Q 018320           97 GVKFV--KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQ----------  164 (358)
Q Consensus        97 gV~v~--~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~----------  164 (358)
                      +|+++  .+..|++++.  +    .|.+.| +++++|.||+|||+++++.++........+++.++++.+          
T Consensus       352 ~v~lv~~~~~~i~~i~~--~----gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~~~~  424 (542)
T 1w4x_A          352 NVHLVDTLSAPIETITP--R----GVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLS  424 (542)
T ss_dssp             TEEEEETTTSCEEEECS--S----EEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTB
T ss_pred             CEEEEecCCCCceEEcC--C----eEEeCC-eEEecCEEEEcCCccccccCcCceeeECCCCCCHHHhhcCchheecccc
Confidence            46666  3567888853  2    477888 899999999999999988776542112233455554322          


Q ss_pred             C-CCCcEEEE-cccccccccccCccccccc-HHHHHHHHHHHHHHHcC
Q 018320          165 S-SNSSVYAV-GDVAAFPLKLLGETRRLEH-VDSARKSAKHAVAAIME  209 (358)
Q Consensus       165 t-~~~~VyAi-GD~~~~~~~~~g~~~~~~~-~~~A~~~g~~aa~~i~g  209 (358)
                      . ..||+|++ |+.+...         .+. ...|..|++.++++|..
T Consensus       425 v~~~Pn~f~~~G~~~~~~---------~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          425 TAGFPNLFFIAGPGSPSA---------LSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             CTTSTTEEESSCTTSSGG---------GSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEcCCCCCcc---------cccHHHHHHHHHHHHHHHHHH
Confidence            1 45667766 6664311         123 36788999999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.28  E-value=3.7e-12  Score=128.41  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=47.2

Q ss_pred             CCCccCCCCCCCC-CC-eEEecCHH-HHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320            5 LKLEEFGLSGSDA-EN-VCYLRDLA-DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus         5 ~~P~~~~ipG~~~-~~-v~~l~~~~-da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      -+|..+++||.+. ++ +++..... +..       ...+|+|+|||+|.+|+|+|..|++.+.+||+++|.+++
T Consensus       159 s~p~~p~ipG~~~f~g~~~~~~~~~~~~~-------~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          159 SNANTPAFDGLDRFTGDIVHTARWPHDGV-------DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             EECCCCCCTTGGGCCSEEEEGGGCCTTCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCCCCCCCcccCCCceEEecccccccc-------ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            3566667888752 22 33322221 221       125899999999999999999999999999999999874

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.11  E-value=3.8e-11  Score=119.59  Aligned_cols=138  Identities=12%  Similarity=0.096  Sum_probs=97.6

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHH---------HHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRL---------VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i---------~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      |...++++.+.+++++.++..+..++         ..........+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.
T Consensus        49 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g  128 (497)
T 2bry_A           49 SGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS  128 (497)
T ss_dssp             TTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC
T ss_pred             CCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC
Confidence            33344555555566676777776665         111112246789999999999999999999999999999986542


Q ss_pred             Cc----cC----------------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcC-CCcEEEEEc--
Q 018320           78 AR----LF----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNL--  122 (358)
Q Consensus        78 ~~----~~----------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~g~v~~v~~--  122 (358)
                      ..    ..                            ..++.+.+.+.+++.||+++++++|++++.++ ++....+.+  
T Consensus       129 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~  208 (497)
T 2bry_A          129 RHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQP  208 (497)
T ss_dssp             CCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEES
T ss_pred             CCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEE
Confidence            10    00                            04566677788888999999999999998631 222234544  


Q ss_pred             C-CC--cEEecCeEEEeeCCCCChh
Q 018320          123 R-DG--NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       123 ~-~g--~~i~~D~vi~a~G~~p~~~  144 (358)
                      . +|  .++.+|.||+|+|.++...
T Consensus       209 ~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          209 NPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             CCCCCEEEEEcCEEEECCCCCcccc
Confidence            4 56  5799999999999987663

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.06  E-value=1.4e-09  Score=102.04  Aligned_cols=95  Identities=16%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------------Ccc-CC---------HHHHHHHH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------ARL-FT---------PKIASYYE   90 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------------~~~-~~---------~~~~~~~~   90 (358)
                      .+|+|||||+.|+.+|..|+++|.+|+++++.+.+.                     +.. .+         .++.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            479999999999999999999999999999986531                     100 00         57888888


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEE-EEcCCCcEEecCeEEEeeCC
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~-v~~~~g~~i~~D~vi~a~G~  139 (358)
                      +.+++.|++++++++|++++.++ +. .. +.+.+| ++.+|.||+|+|.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~-~~-~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFG-ER-LRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEET-TE-EEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEECC-Cc-EEEEEeCCC-EEEeCEEEECCCC
Confidence            88899999999999999998743 33 34 777777 8999999999995

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.97  E-value=1.7e-09  Score=108.74  Aligned_cols=101  Identities=18%  Similarity=0.262  Sum_probs=83.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------------------------------------Ccc----
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------------------ARL----   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------------------------------------~~~----   80 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.                                     ...    
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~~  187 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDPN  187 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecccc
Confidence            579999999999999999999999999999875320                                     000    


Q ss_pred             C------------------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEec
Q 018320           81 F------------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT  130 (358)
Q Consensus        81 ~------------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~  130 (358)
                      .                              ..++.+.+.+.+++.|++++++++|++++. +++.+..+.+.+|+++.+
T Consensus       188 ~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~A  266 (549)
T 3nlc_A          188 FYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIKS  266 (549)
T ss_dssp             CHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEEC
T ss_pred             ccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEEC
Confidence            0                              044566677788889999999999999987 456677788999999999


Q ss_pred             CeEEEeeCCCCCh
Q 018320          131 DMVVVGIGIRPNT  143 (358)
Q Consensus       131 D~vi~a~G~~p~~  143 (358)
                      |.||+|+|..+..
T Consensus       267 d~VVlA~G~~s~~  279 (549)
T 3nlc_A          267 RHVVLAVGHSARD  279 (549)
T ss_dssp             SCEEECCCTTCHH
T ss_pred             CEEEECCCCChhh
Confidence            9999999998864

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.95  E-value=6.2e-09  Score=101.04  Aligned_cols=80  Identities=19%  Similarity=0.285  Sum_probs=62.8

Q ss_pred             hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC--------CCCChhhhhcc-cc--cccCcEEEeccc
Q 018320           95 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--------IRPNTSLFEGQ-LT--LEKGGIKVTGRL  163 (358)
Q Consensus        95 ~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G--------~~p~~~l~~~~-~~--~~~g~i~vd~~~  163 (358)
                      +.| ++++++.|++|+.++++  ..|.+.+|+++.+|.||+|+|        +.|+.+..... +.  .....++|+..+
T Consensus       216 ~~g-~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~  292 (431)
T 3k7m_X          216 EIP-EIRLQTVVTGIDQSGDV--VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHV  292 (431)
T ss_dssp             TCS-CEESSCCEEEEECSSSS--EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEE
T ss_pred             hCC-ceEeCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEE
Confidence            346 99999999999864444  357788888899999999999        88887654322 22  234569999999


Q ss_pred             cCCCCcEEEEcccc
Q 018320          164 QSSNSSVYAVGDVA  177 (358)
Q Consensus       164 ~t~~~~VyAiGD~~  177 (358)
                      +|+.+++|+.||+.
T Consensus       293 ~~~~~~i~~~~d~~  306 (431)
T 3k7m_X          293 RGAEAGIECVGDGI  306 (431)
T ss_dssp             ESCCTTEEEEBSSS
T ss_pred             CCCCcCceEcCCCC
Confidence            99999999999974

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.93  E-value=2.1e-09  Score=100.04  Aligned_cols=100  Identities=14%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------Ccc---CCHHHHHHHHHHHHhCCCEEEcC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------ARL---FTPKIASYYEEYYKSKGVKFVKG  103 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------~~~---~~~~~~~~~~~~l~~~gV~v~~~  103 (358)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+.               +..   ...++...+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            589999999999999999999999999999976432               110   13567788888888899999999


Q ss_pred             CeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC---CCCh
Q 018320          104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI---RPNT  143 (358)
Q Consensus       104 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~---~p~~  143 (358)
                      ++|++++.++++. ..+.+.+|+ +.+|.||+|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            9999998744423 357777775 999999999999   6654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.93  E-value=3.1e-09  Score=99.17  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=79.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC----cc------------cCc----cCCHHHHHHHHHHHHhCCCE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA----HC------------MAR----LFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~----~~------------l~~----~~~~~~~~~~~~~l~~~gV~   99 (358)
                      ..++|+|||||+.|+.+|..|++.|.+|+|+++.+    .+            ++.    ...+++...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            35789999999999999999999999999999954    11            111    01357788888999999999


Q ss_pred             EEcCCeeeEEEEcCCCcEEEEEc---CCCcEEecCeEEEeeCCCCChh
Q 018320          100 FVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       100 v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.++ +++++.+ ++.+ .+.+   .++.++.+|.+|+|+|.+|...
T Consensus       101 i~~~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          101 IITET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             EECSC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            99988 9999863 3333 3444   3677899999999999877643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.92  E-value=5.5e-09  Score=96.72  Aligned_cols=100  Identities=10%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--Ccc--------cCc---cCCHHHHHHHHHHHHhCCCEEEcCCeeeE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC--------MAR---LFTPKIASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--~~~--------l~~---~~~~~~~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+++++.  ..+        .+.   ....++.+.+.+.+++.|++++. +++++
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            58999999999999999999999999999985  111        111   11256777888888899999999 89999


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.+++.  ..+.+.+|.++.+|.+|+|+|..|...
T Consensus        95 i~~~~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENRGDE--FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC--C--EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEecCCE--EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            9864333  457778888999999999999887654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.89  E-value=9.6e-09  Score=103.24  Aligned_cols=102  Identities=23%  Similarity=0.235  Sum_probs=82.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHH-hCCCcEEEEeeCCcccC--------c------------cC----------------CHH
Q 018320           42 GNAVVIGGGYIGMECAASLV-INKINVTMVFPEAHCMA--------R------------LF----------------TPK   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~-~~g~~Vtlv~~~~~~l~--------~------------~~----------------~~~   84 (358)
                      .+|+|||||+.|+.+|..|+ +.|.+|+|+++.+.+..        .            .+                .++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 99999999999753310        0            01                246


Q ss_pred             HHHHHHHHHHhCCC--EEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC--CCCh
Q 018320           85 IASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNT  143 (358)
Q Consensus        85 ~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~  143 (358)
                      +.+.+.+..++.|+  +++++++|++++.++++....|.+.+|+++.+|.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            67778888888898  89999999999876554556788889999999999999994  5553

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.89  E-value=7.2e-09  Score=94.89  Aligned_cols=100  Identities=16%  Similarity=0.264  Sum_probs=77.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc---------cCc---cCCHHHHHHHHHHHHhC-CCEEEcCCeeeE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC---------MAR---LFTPKIASYYEEYYKSK-GVKFVKGTVLSS  108 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~---------l~~---~~~~~~~~~~~~~l~~~-gV~v~~~~~v~~  108 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+..         ++.   ....++...+.+.+++. +++++.+ ++++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            47999999999999999999999999999975321         111   11246677777777776 7888764 8999


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.++++  ..+.+.+|+++.+|.||+|+|.+|...
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            9864333  467788898999999999999887543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.89  E-value=8e-09  Score=104.03  Aligned_cols=103  Identities=21%  Similarity=0.284  Sum_probs=83.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--------c------------cC----------------CHH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R------------LF----------------TPK   84 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--------~------------~~----------------~~~   84 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..        .            .+                .++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            35899999999999999999999999999999653310        0            01                246


Q ss_pred             HHHHHHHHHHhCCC--EEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC--CCCCh
Q 018320           85 IASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT  143 (358)
Q Consensus        85 ~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G--~~p~~  143 (358)
                      +.+.+.+.+++.|+  +++++++|++++.+++.....|++.+|+++.+|.||+|+|  .+|..
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            77788888888898  8999999999987555545678888999999999999999  55554

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.88  E-value=9.7e-09  Score=96.06  Aligned_cols=98  Identities=12%  Similarity=0.251  Sum_probs=78.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc------------------CccCCHHHHHHHHHHHHhCCCEEEc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARLFTPKIASYYEEYYKSKGVKFVK  102 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l------------------~~~~~~~~~~~~~~~l~~~gV~v~~  102 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.                  +.....++.+.+.+.+++.+++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL   84 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            3589999999999999999999999999999876431                  0001256667777778888999999


Q ss_pred             CCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          103 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       103 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      +++|++++.+++  ...+.+.+|+++.+|.||+|+|..
T Consensus        85 ~~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           85 GERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             SCCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CCEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            999999986433  245777788889999999999984

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.88  E-value=6.6e-09  Score=101.13  Aligned_cols=99  Identities=20%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc---------------------------c-------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------L-------------   80 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---------------------------~-------------   80 (358)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...                           .             
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            468999999999999999999999999999987653110                           0             


Q ss_pred             -----------------------CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320           81 -----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        81 -----------------------~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                                             -..++.+.+.+.+++.||+++++++|++++.++++  ..+.+.+| ++.+|.||+|+
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~--~~V~~~~g-~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG--FRVTTSAG-TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE--EEEEETTE-EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE--EEEEECCc-EEEeeEEEECC
Confidence                                   01255666777888889999999999999864433  45777777 89999999999


Q ss_pred             CCCCC
Q 018320          138 GIRPN  142 (358)
Q Consensus       138 G~~p~  142 (358)
                      |..+.
T Consensus       184 G~~S~  188 (417)
T 3v76_A          184 GGKSI  188 (417)
T ss_dssp             CCSSC
T ss_pred             CCccC
Confidence            98864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.87  E-value=1.3e-08  Score=96.35  Aligned_cols=99  Identities=14%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------C--------c---cCCHHHHHHHHHHHHhCCCEEEc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------A--------R---LFTPKIASYYEEYYKSKGVKFVK  102 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~--------~---~~~~~~~~~~~~~l~~~gV~v~~  102 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.       +        .   ....++.+.+.+.+++.+++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            4689999999999999999999999999999876431       1        0   01256777788888888999999


Q ss_pred             CCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          103 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       103 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      +++|++++.++++. ..+.+.+|+++.+|.||+|+|..
T Consensus        94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence            99999998744433 35777888899999999999984

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.86  E-value=8.2e-09  Score=99.40  Aligned_cols=100  Identities=19%  Similarity=0.333  Sum_probs=76.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-c-cCCH---------HHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-R-LFTP---------KIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-~-~~~~---------~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      .-+|+|||||+.|+.+|..|...+.+|||+++.+.+.- + .++.         ++.....+.+++.||+++++++|+++
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~i   88 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSI   88 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEE
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEE
Confidence            34899999999999999999888999999999876421 0 0111         11122345677889999999999999


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +. ++.   .+++.+|+++.+|.+|+|||.+|...
T Consensus        89 d~-~~~---~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           89 DP-NNK---LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             ET-TTT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EC-CCC---EEEECCCCEEECCEEEEecCCCcCCC
Confidence            85 232   46778999999999999999887653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.86  E-value=5.1e-08  Score=97.03  Aligned_cols=196  Identities=11%  Similarity=0.078  Sum_probs=106.1

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHH-hcCCCCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCcc--
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL--   80 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l-~~~~~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~--   80 (358)
                      .|..+++++.. ..+++-..+.+...  ... ....+|+|+|||+|.+|+|++..|++.  +.+|+++.|.+.+.+..  
T Consensus       213 ~P~iP~~~~~~-g~v~Hss~y~~~~~--~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s  289 (501)
T 4b63_A          213 TAKMPSGLPQD-PRIIHSSKYCTTLP--ALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDS  289 (501)
T ss_dssp             EECCCTTSCCC-TTEEEGGGHHHHHH--HHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCC
T ss_pred             CCCCCCCCCCC-cceeeccccccchh--hccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcccccccc
Confidence            34443333332 45766544433221  111 123689999999999999999999875  78999999987654321  


Q ss_pred             ------CCHH-------------------------------HHHHHHHHH-Hh---------CCCEEEcCCeeeEEEEcC
Q 018320           81 ------FTPK-------------------------------IASYYEEYY-KS---------KGVKFVKGTVLSSFDVDS  113 (358)
Q Consensus        81 ------~~~~-------------------------------~~~~~~~~l-~~---------~gV~v~~~~~v~~i~~~~  113 (358)
                            ++|+                               +.+.+.+.+ ++         ....+..+..+..++...
T Consensus       290 ~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~  369 (501)
T 4b63_A          290 PFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHG  369 (501)
T ss_dssp             TTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCS
T ss_pred             ccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecC
Confidence                  1111                               111111111 10         123456666666655322


Q ss_pred             C-CcE-----------EEEEcCCCcEEecCeEEEeeCCCCChh-hhhcc---ccc-ccCcEEEeccccC--------CCC
Q 018320          114 N-GKV-----------VAVNLRDGNRLPTDMVVVGIGIRPNTS-LFEGQ---LTL-EKGGIKVTGRLQS--------SNS  168 (358)
Q Consensus       114 ~-g~v-----------~~v~~~~g~~i~~D~vi~a~G~~p~~~-l~~~~---~~~-~~g~i~vd~~~~t--------~~~  168 (358)
                      . +.+           ..+.+.+|+++++|.||+|||++|+.. ++...   +.. ..|.+.|+..++-        ..+
T Consensus       370 ~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~  449 (501)
T 4b63_A          370 PQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEA  449 (501)
T ss_dssp             SSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTC
T ss_pred             CCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCc
Confidence            1 221           124466889999999999999998864 22222   222 4577778765542        246


Q ss_pred             cEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          169 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       169 ~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      +||+.|-+-.....  +.+   -+--.|.+.|++ ++.|+|.
T Consensus       450 ~i~~qg~~~~thG~--~~~---~Ls~~a~R~~~I-~~~l~g~  485 (501)
T 4b63_A          450 GIWLQGCNERTHGL--SDS---LLSVLAVRGGEM-VQSIFGE  485 (501)
T ss_dssp             EEEECSCCHHHHCT--TTT---SSTTHHHHHHHH-HHHHHHH
T ss_pred             eEEecCCCcccCCc--chh---hHHHHHHHHHHH-HHHHhcc
Confidence            79999954322111  111   111246676765 4556664

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.85  E-value=1.7e-08  Score=96.47  Aligned_cols=98  Identities=22%  Similarity=0.273  Sum_probs=80.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987654210                                         


Q ss_pred             --cCC-----------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           80 --LFT-----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        80 --~~~-----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                        .++           .++.+.+.+.+++.||+++.+++|++++.  ++   .+++.+|+++.+|.||.|+|..+..
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHH
Confidence              000           34566777888888999999999999975  44   4677889899999999999988754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.84  E-value=1.5e-08  Score=93.65  Aligned_cols=98  Identities=15%  Similarity=0.256  Sum_probs=77.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc-----------ccCc---cCC-HHHHHHHHHHHHhCCCEEEcCCee
Q 018320           43 NAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-----------CMAR---LFT-PKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~-----------~l~~---~~~-~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      +++|||||+.|+.+|..|++.|. +|+++++...           ..+.   .++ .++.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            69999999999999999999999 9999998521           0111   112 46677778888889999998 789


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ++++.+++ . ..+.+.+|+++.+|.||+|+|.+|..
T Consensus        82 ~~i~~~~~-~-~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSKKDS-H-FVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEEETT-E-EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEcCC-E-EEEEEcCCCEEECCEEEECCCCCCCC
Confidence            99876333 2 34667788899999999999987654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.84  E-value=3.2e-09  Score=103.78  Aligned_cols=100  Identities=21%  Similarity=0.299  Sum_probs=77.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh---CCCcEEEEeeCCcccCc----------cCCHHHHHHHHHHHHhCCCEEEcCCeeeE
Q 018320           42 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~---~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      ++|+|||||+.|+++|..|++   .|.+|||+++.+.+.-.          ....++...+.+.+++.||+++. .++++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   89999999998864211          01123333456777889999985 58999


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                      ++.+ +.   .+.+.+|+++.+|.+|+|+|.+|+...+
T Consensus        84 id~~-~~---~V~~~~g~~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           84 IDAE-AQ---NITLADGNTVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred             EEcC-CC---EEEECCCCEEECCEEEECCCCCcCcccC
Confidence            9752 22   4677888899999999999999886543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.83  E-value=2.4e-08  Score=98.39  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=77.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh---CCCc---EEEEeeCCcccCc------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVI---NKIN---VTMVFPEAHCMAR------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~---~g~~---Vtlv~~~~~~l~~------------------------------------   79 (358)
                      ++|+|||||+.|+.+|..|++   .|.+   |+++++.+.+...                                    
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            689999999999999999999   9999   9999997643100                                    


Q ss_pred             --------------cC-CHHHHHHHHHHHHhCCCE--EEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEee
Q 018320           80 --------------LF-TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGI  137 (358)
Q Consensus        80 --------------~~-~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~  137 (358)
                                    .. ..++.+.+.+.+++.|++  ++++++|++++.++++....|++.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence                          00 134566677777888998  9999999999874442123454443   4  578999999999


Q ss_pred             C--CCCChh
Q 018320          138 G--IRPNTS  144 (358)
Q Consensus       138 G--~~p~~~  144 (358)
                      |  .+|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.83  E-value=1.9e-08  Score=93.23  Aligned_cols=102  Identities=11%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc------cC------ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------MA------RLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~------l~------~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      -.|+|||||+.|+.+|..|++.|.+|+|+++...-      .+      ....+++.+...+.+.+.+...+....+..+
T Consensus         7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMI   86 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEE
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEe
Confidence            47999999999999999999999999999986321      01      1122455555555565555444444455566


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ...+++. ..+.+.+|+++.+|.||+|||.+|...
T Consensus        87 ~~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A           87 TKQSTGL-FEIVTKDHTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             EECTTSC-EEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred             eecCCCc-EEEEECCCCEEEeCEEEEccCCccccc
Confidence            5534443 467788999999999999999887543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.82  E-value=1.3e-08  Score=94.08  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=78.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC--ccc-----------CccCCHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~--~~l-----------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      +++|||||+.|+.+|..|++.|.+|+++++..  .+.           +....+++...+.+.+++.|++++.+++++.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            69999999999999999999999999997531  110           00012467778888888999999999999999


Q ss_pred             EEcCC-CcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          110 DVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       110 ~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      +.+.+ +....+.+.+|+++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22345777888899999999999987754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.81  E-value=7.7e-08  Score=91.37  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------------   79 (358)
                      .|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                                           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            6999999999999999999999999999986543110                                           


Q ss_pred             ------------cCC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-CCC--cEEecCeEEEeeCCCC
Q 018320           80 ------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDG--NRLPTDMVVVGIGIRP  141 (358)
Q Consensus        80 ------------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~~g--~~i~~D~vi~a~G~~p  141 (358)
                                  .++ ..+...+.+...+.|++++.+++++.+.. +++.+..+.. .++  .++.+|.||-|.|..+
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                        000 22345556667778999999999999876 4454444433 233  4688999999999654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.81  E-value=4.7e-08  Score=92.52  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=75.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC------------ccc-Cc---------------------------c
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA------------HCM-AR---------------------------L   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~------------~~l-~~---------------------------~   80 (358)
                      .+|+|||||+.|+.+|..|++.|. +|+|+++.+            +++ +.                           .
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            479999999999999999999999 999999875            000 00                           0


Q ss_pred             CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           81 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        81 ~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      .+ .++...+.+.+++.|++++.++.|++++.++++  ..+.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence            01 345566677778899999999999999874333  34666666 6999999999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.80  E-value=1.5e-08  Score=101.88  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=81.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------------------------C---------cc--CCHH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------A---------RL--FTPK   84 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------------------------~---------~~--~~~~   84 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.                         +         ..  -.++
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~e   88 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE   88 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHH
Confidence            3579999999999999999999999999999975431                         0         00  1256


Q ss_pred             HHHHHHHHHHhCCC--EEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC--CCCCh
Q 018320           85 IASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT  143 (358)
Q Consensus        85 ~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G--~~p~~  143 (358)
                      +...+.+..++.|+  +++++++|++++.+++.....|++.+|+++.+|.||+|+|  .+|+.
T Consensus        89 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           89 MLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            77788888888888  8999999999987555445578888999999999999999  56554

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.80  E-value=2.9e-08  Score=96.08  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=78.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--------------------cc---------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------------------RL---------------------   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--------------------~~---------------------   80 (358)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..                    ..                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4799999999999999999999999999998764310                    00                     


Q ss_pred             ----------------------CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcC---CCcEEEEEcCCCcEEecCeEEE
Q 018320           81 ----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS---NGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        81 ----------------------~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                                            ...++.+.+.+.+++.||++++++.++++..++   ++. ..+++.++ ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence                                  123455667778888999999999999998641   333 35666666 799999999


Q ss_pred             eeCCCCCh
Q 018320          136 GIGIRPNT  143 (358)
Q Consensus       136 a~G~~p~~  143 (358)
                      |+|..+..
T Consensus       163 AtG~~s~p  170 (401)
T 2gqf_A          163 ATGGLSMP  170 (401)
T ss_dssp             CCCCSSCG
T ss_pred             CCCCccCC
Confidence            99998854

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.79  E-value=1.7e-08  Score=94.34  Aligned_cols=99  Identities=12%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEee----CCcc------------cCc----cCCHHHHHHHHHHHHhCCCEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFP----EAHC------------MAR----LFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~----~~~~------------l~~----~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+++++    ...+            .+.    ....++...+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5899999999999999999999999999998    2211            111    0124677777888889999999


Q ss_pred             cCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       102 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      .++ +++++.+++.  ..+.+ +|.++.+|.||+|+|.+|...
T Consensus        89 ~~~-v~~i~~~~~~--~~v~~-~~~~~~~~~vv~A~G~~~~~~  127 (333)
T 1vdc_A           89 TET-VTKVDFSSKP--FKLFT-DSKAILADAVILAIGAVAKRL  127 (333)
T ss_dssp             CCC-CCEEECSSSS--EEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred             EeE-EEEEEEcCCE--EEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence            986 8898763332  34666 778899999999999887643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.79  E-value=1.2e-08  Score=98.33  Aligned_cols=101  Identities=22%  Similarity=0.311  Sum_probs=74.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCccCCHHHH---------HHHHHHHHhCCCEEEcCCeeeEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPKIA---------SYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~~~~~~~~---------~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      +|||||||||+.|+.+|..|++.+  .+||||++.+......+...+.         ..-.+.+.++||+++.+ +|++|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            799999999999999999998875  5899999887542211111111         00123456789999865 68899


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                      +. ++.   .+.+.+|+++++|.+++|+|.+++..-.
T Consensus        81 d~-~~~---~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           81 DP-DKK---LVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             ET-TTT---EEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             Ec-cCc---EEEecccceeecceeeeccCCccccCCc
Confidence            75 222   4677899999999999999998876533

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.79  E-value=1.9e-08  Score=101.68  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=94.5

Q ss_pred             CCCCCCCCCCeEEecCHHHHHHHHHHHhcC--CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------
Q 018320           10 FGLSGSDAENVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------   79 (358)
Q Consensus        10 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~--~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------   79 (358)
                      +++|+.+.+++..++...+...+...+...  ..-+|+|||+|.+|+.+|..|++.|.+|+|+|+.+.+...        
T Consensus        88 ~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~  167 (566)
T 1qo8_A           88 KPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGM  167 (566)
T ss_dssp             CCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCE
T ss_pred             CCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCcee
Confidence            557777666666666644455554444311  2247999999999999999999999999999987643210        


Q ss_pred             ------------------------------cC------------------------------------------------
Q 018320           80 ------------------------------LF------------------------------------------------   81 (358)
Q Consensus        80 ------------------------------~~------------------------------------------------   81 (358)
                                                    ..                                                
T Consensus       168 ~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~  247 (566)
T 1qo8_A          168 NAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKS  247 (566)
T ss_dssp             ECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSC
T ss_pred             EccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCC
Confidence                                          00                                                


Q ss_pred             -CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC--CCc--EEecCeEEEeeCCCCCh
Q 018320           82 -TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        82 -~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~~  143 (358)
                       ...+...+.+.+++.||++++++.|+++..++++++..+.+.  +|+  ++.+|.||+|+|.....
T Consensus       248 ~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~  314 (566)
T 1qo8_A          248 SGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN  314 (566)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTC
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccC
Confidence             112345556667788999999999999987433777666554  675  68999999999976543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.78  E-value=2.8e-08  Score=92.69  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=77.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-----------ccCcc----CCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMARL----FTPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-----------~l~~~----~~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      .+++|||||+.|+.+|..|++.|.+|+++++...           ..+..    ...++.+.+.+.+++.|++++. .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            5799999999999999999999999999998721           01110    1246677778888899999997 588


Q ss_pred             eEEEEcC-CCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~-~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++++.+. +.....+.+.+|+++.+|.+|+|+|.+|...
T Consensus        88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~  126 (325)
T 2q7v_A           88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKL  126 (325)
T ss_dssp             EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence            8887641 2211234566788999999999999877643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.78  E-value=1.9e-09  Score=105.29  Aligned_cols=96  Identities=21%  Similarity=0.281  Sum_probs=71.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCccCCHH----------HHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPK----------IASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~~~~~~----------~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      |+|||||||+.|+.+|..|++++  .+||||++.++..-...-+.          +...+.+.+++.||+++.+ +|++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            78999999999999999999875  78999999876421101111          1111234566779999976 68999


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      +. ++.   .|++.+|+++++|.+|+|+|.++.
T Consensus        82 d~-~~~---~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DP-DAN---TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ET-TTT---EEEETTCCEEECSEEEECCCCEEE
T ss_pred             EC-CCC---EEEECCCCEEECCEEEEeCCCCcc
Confidence            75 222   477889999999999999998653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.77  E-value=4.3e-08  Score=96.06  Aligned_cols=100  Identities=26%  Similarity=0.357  Sum_probs=79.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cC----
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LF----   81 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~----   81 (358)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...                                    .+    
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            57999999999999999999999999999987643100                                    00    


Q ss_pred             --------------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320           82 --------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        82 --------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                                                ...+.+.+.+.+++.||+++++++|+++.. +++.+..+++.+|+++.+|.||+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEE
Confidence                                      023445566777889999999999999986 45665678888888899999999


Q ss_pred             eeCCCCC
Q 018320          136 GIGIRPN  142 (358)
Q Consensus       136 a~G~~p~  142 (358)
                      |+|..+.
T Consensus       186 AtGg~s~  192 (447)
T 2i0z_A          186 AVGGKSV  192 (447)
T ss_dssp             CCCCSSS
T ss_pred             CCCCCcC
Confidence            9998773

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.77  E-value=5.9e-08  Score=97.03  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=81.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC--ccc-----------CccCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~--~~l-----------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      ...+|+|||||+.|+.+|..|++.|.+|+++++..  .+.           +....+++...+.+.+++.||+++.++++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v  290 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA  290 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            34579999999999999999999999999997631  111           11123567788888889999999999999


Q ss_pred             eEEEEcCC-CcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          107 SSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       107 ~~i~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ++++.+.+ +....+.+.+|.++.+|.||+|+|.+|..
T Consensus       291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            99974221 22346778888899999999999987654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.74  E-value=6.2e-09  Score=100.67  Aligned_cols=98  Identities=22%  Similarity=0.333  Sum_probs=74.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh---CCCcEEEEeeCCcccCc----------cCCHHHHHHHHHHHHhCCCEEEcCCeeeE
Q 018320           42 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~---~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      ++|+|||||++|+++|..|++   .|.+|||+++.+.+...          ....++...+.+.+++.|++++.+ ++++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            589999999999999999999   89999999998754211          011233344566777889999987 8999


Q ss_pred             EEEcCCCcEEEEEcCCCc----EEecCeEEEeeCCCCChh
Q 018320          109 FDVDSNGKVVAVNLRDGN----RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~----~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.+ +.   .+.+.+++    ++.+|.||+|+|.+|+..
T Consensus        81 i~~~-~~---~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAK-SS---MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETT-TT---EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCC-CC---EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            9752 22   24445554    399999999999988865

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.74  E-value=4.4e-08  Score=94.28  Aligned_cols=101  Identities=17%  Similarity=0.245  Sum_probs=75.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----cCCHHHHHH---------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASY---------------------------   88 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~---------------------------   88 (358)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...     .+.+...+.                           
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987654211     122322221                           


Q ss_pred             ----------------HHHHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           89 ----------------YEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        89 ----------------~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                                      +.+.|.+  .|++++++++|++++.++++  ..+++.+|+++.+|.||.|.|..+..
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCCCEEECCEEEECCCcchhH
Confidence                            2222222  38999999999999875444  35788899999999999999987653

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.74  E-value=4.1e-08  Score=94.34  Aligned_cols=101  Identities=22%  Similarity=0.176  Sum_probs=78.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------------------   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------------------   78 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            5799999999999999999999999999998754300                                           


Q ss_pred             --c-------------cC-CHHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEE-EEEcCCCcEEecCeEEEeeCCC
Q 018320           79 --R-------------LF-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVV-AVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        79 --~-------------~~-~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~-~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                        .             .+ ..++.+.+.+.+++. |++++++++|++++.++++ +. .+++.+|+++.+|.||.|+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence              0             00 124455666667776 9999999999999875444 32 5778889899999999999987


Q ss_pred             CCh
Q 018320          141 PNT  143 (358)
Q Consensus       141 p~~  143 (358)
                      +..
T Consensus       166 s~v  168 (399)
T 2x3n_A          166 SYV  168 (399)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.74  E-value=4e-08  Score=91.13  Aligned_cols=98  Identities=12%  Similarity=0.196  Sum_probs=75.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-----------ccCc----cCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMAR----LFTPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-----------~l~~----~~~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+++++...           ..+.    ...+++.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            5799999999999999999999999999996420           0111    1125677777888889999999986 8


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      +.++.+ ++.+ .+ +.++.++.+|.+|+|+|.+|..
T Consensus        85 ~~i~~~-~~~~-~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           85 NKVDLQ-NRPF-RL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             EEEECS-SSSE-EE-EESSCEEEEEEEEECCCEEECC
T ss_pred             eEEEec-CCEE-EE-EeCCCEEEcCEEEECCCCCcCC
Confidence            888753 3332 33 5678899999999999987754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.7e-09  Score=101.50  Aligned_cols=43  Identities=12%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             HHHhcCCCCcEEEEcCcHHHHHHHHHHHh--CCCcEEEEeeCCcc
Q 018320           34 NVMKSCSGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHC   76 (358)
Q Consensus        34 ~~l~~~~~~~vvVIGgG~~gle~A~~L~~--~g~~Vtlv~~~~~~   76 (358)
                      +.+.......|+|||||+.|+.+|..|++  .|.+|+|+|+.+.+
T Consensus        58 ~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           58 KDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             HHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             hhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            33444455789999999999999999974  59999999997654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.72  E-value=9.5e-09  Score=98.22  Aligned_cols=99  Identities=22%  Similarity=0.366  Sum_probs=73.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC----------ccCCH-HHHHHHHHHHHhCCCEEEcCCeeeE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------RLFTP-KIASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~----------~~~~~-~~~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      .+.+++|||||+.|+.+|..|++.| +|+|+++.+.+..          ...+. ++.....+.+++.||+++.+++++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            4789999999999999999999999 9999998865311          00111 1111234566778999999999999


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.  +..  .+. .+|+++.+|.+|+|||.+|...
T Consensus        86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            975  232  344 5778999999999999888653

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.71  E-value=5.1e-08  Score=94.14  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=78.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------Cc----------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------AR----------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------~~----------------------------------   79 (358)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+..-        +.                                  
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            489999999999999999999999999999874210        00                                  


Q ss_pred             ----------------cCC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCC
Q 018320           80 ----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIR  140 (358)
Q Consensus        80 ----------------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~  140 (358)
                                      .++ ..+...+.+.+++.|++++.+++|++++.++++....+.+.+|+  ++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence                            001 23455666777778999999999999987555555567778887  69999999999987


Q ss_pred             C
Q 018320          141 P  141 (358)
Q Consensus       141 p  141 (358)
                      +
T Consensus       166 s  166 (421)
T 3nix_A          166 R  166 (421)
T ss_dssp             C
T ss_pred             h
Confidence            6

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.71  E-value=6.6e-08  Score=89.85  Aligned_cols=99  Identities=10%  Similarity=0.155  Sum_probs=75.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-----------ccCc---cCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMAR---LFTPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-----------~l~~---~~~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      ..+++|||||+.|+.+|..|++.|.+|+++++...           ..+.   ....++.+.+.+.+++.|++++. .++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            35899999999999999999999999999998521           0111   11246677777888889999998 688


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ++++.+++ . ..+.+ ++.++.+|.+|+|+|..|..
T Consensus        95 ~~i~~~~~-~-~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           95 RSIKKTQG-G-FDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEEETT-E-EEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEEeCC-E-EEEEE-CCCEEEeCEEEECCCCCccc
Confidence            88876333 2 23554 66789999999999987654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.70  E-value=1.9e-08  Score=97.25  Aligned_cols=97  Identities=19%  Similarity=0.374  Sum_probs=74.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCccc------C-ccC-----CHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM------A-RLF-----TPKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l------~-~~~-----~~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      ++++|||||+.|+.+|..|++.|.  +||++++.+.+.      + ..+     ..++.....+.+.+.+|+++. ++++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  899999976321      0 000     111112234567788999999 8999


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      +++.  +.+  .+.+.+|+++.+|.+++|+|.+|..
T Consensus        81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence            9975  232  4677889999999999999987664

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.70  E-value=5.1e-08  Score=95.42  Aligned_cols=103  Identities=19%  Similarity=0.194  Sum_probs=76.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccCc-------------------------------------c
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR-------------------------------------L   80 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~~-------------------------------------~   80 (358)
                      ..++|+|||||++|+.+|..|++.|.  +|+++++.+.+...                                     .
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35799999999999999999999999  99999987533100                                     0


Q ss_pred             --------------C--------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---Cc---
Q 018320           81 --------------F--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN---  126 (358)
Q Consensus        81 --------------~--------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~---  126 (358)
                                    +              ..++.+++.+..++.++.++++++|++++.++++  ..|++.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~--~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS--WVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE--EEEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCe--EEEEEeecCCCCeeE
Confidence                          0              0245566666666668889999999999864332  2344444   66   


Q ss_pred             EEecCeEEEeeCC--CCChh
Q 018320          127 RLPTDMVVVGIGI--RPNTS  144 (358)
Q Consensus       127 ~i~~D~vi~a~G~--~p~~~  144 (358)
                      ++.+|.||+|+|.  .|+..
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p  182 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIP  182 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBC
T ss_pred             EEEeCEEEECCCCCCCCCCC
Confidence            7999999999998  66543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.70  E-value=4.8e-08  Score=90.09  Aligned_cols=99  Identities=13%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEE-EeeCCcc------------cCc----cCCHHHHHHHHHHHHhCCCEEEcC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTM-VFPEAHC------------MAR----LFTPKIASYYEEYYKSKGVKFVKG  103 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtl-v~~~~~~------------l~~----~~~~~~~~~~~~~l~~~gV~v~~~  103 (358)
                      .++|+|||||+.|+.+|..|++.|.+|++ +++. .+            .+.    ....++...+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            46899999999999999999999999999 9973 21            111    012577888888889999999988


Q ss_pred             CeeeEEEEcCC-CcEEEE-EcCCCcEEecCeEEEeeCCCCChh
Q 018320          104 TVLSSFDVDSN-GKVVAV-NLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       104 ~~v~~i~~~~~-g~v~~v-~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                       ++.++ .+++ +. ..+ ...++ ++.+|.+|+|+|.+|+..
T Consensus        83 -~v~~i-~~~~~~~-~~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 -GVEQI-LKNSDGS-FTIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             -CEEEE-EECTTSC-EEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             -EEEEE-ecCCCCc-EEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence             88888 5331 22 232 23344 899999999999877654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.69  E-value=6.5e-08  Score=89.46  Aligned_cols=100  Identities=14%  Similarity=0.175  Sum_probs=75.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-------c---------Cc----cCCHHHHHHHHHHHHhCCCEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------M---------AR----LFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-------l---------~~----~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      ..|+|||||+.|+.+|..|+++|.+|+++++.+..       +         +.    ...+++...+.+.+++.++++.
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            47999999999999999999999999999986420       0         11    1125677778888899999988


Q ss_pred             cCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       102 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ... +.....+.+.  ..+.+.++.++.+|.+|+|||.+|...
T Consensus        85 ~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~~  124 (314)
T 4a5l_A           85 TET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKRM  124 (314)
T ss_dssp             CCC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred             EeE-EEEeecCCCc--eEEEECCCeEEEEeEEEEccccccccc
Confidence            654 5555432333  346667889999999999999877643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=5.9e-08  Score=90.98  Aligned_cols=100  Identities=14%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc---c--------cCc----cCCHHHHHHHHHHHHhCCCEEEcCCe
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTV  105 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~gV~v~~~~~  105 (358)
                      ..+++|||||+.|+.+|..|++.|.+|+++++...   +        .+.    ...+++.+.+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            46899999999999999999999999999996410   0        111    1125677777888888999999987 


Q ss_pred             eeEEEEcCCCcEEEE-EcCCCcEEecCeEEEeeCCCCChh
Q 018320          106 LSSFDVDSNGKVVAV-NLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       106 v~~i~~~~~g~v~~v-~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +++++. .+.  ..+ .+.+|+++.+|.+|+|+|.+|...
T Consensus        93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~~  129 (335)
T 2a87_A           93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARYL  129 (335)
T ss_dssp             EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence            888875 222  234 567888999999999999877543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.69  E-value=5.3e-08  Score=94.34  Aligned_cols=99  Identities=21%  Similarity=0.416  Sum_probs=74.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCc--EEEEeeCCcccCc--cCCHHHH---------HHHHHHHHhCCCEEEcCCeeeE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKIN--VTMVFPEAHCMAR--LFTPKIA---------SYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~--Vtlv~~~~~~l~~--~~~~~~~---------~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      ++++|||||+.|+.+|..|++.|.+  |+++++.+.+.-.  .+.....         ....+.+++.||+++.+++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5899999999999999999999987  9999988753110  0111110         1123456778999999999999


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.  +.+  .+.+.+|+++.+|.+|+|+|.+|...
T Consensus        83 id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDV--QTR--TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEEECCCCEEECCEEEEccCCcccCC
Confidence            975  222  46778899999999999999887653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.68  E-value=3.6e-08  Score=96.23  Aligned_cols=101  Identities=23%  Similarity=0.355  Sum_probs=75.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCccc------Cc-cCC-----HHHHHHHHHHHHhCCCEEEcCCee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM------AR-LFT-----PKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l------~~-~~~-----~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      .++++|||||+.|+.+|..|++.|.  +|+++++.+.+.      .. .+.     .++.....+.+++.||+++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999998  799999875421      00 010     011111235677889999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  145 (358)
                      +.++. ++.   .+.+.+|+++.+|.+|+|+|.+|....
T Consensus        84 ~~i~~-~~~---~v~~~~g~~~~~d~lviAtG~~p~~~~  118 (431)
T 1q1r_A           84 TAINR-DRQ---QVILSDGRALDYDRLVLATGGRPRPLP  118 (431)
T ss_dssp             EEEET-TTT---EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred             EEEEC-CCC---EEEECCCCEEECCEEEEcCCCCccCCC
Confidence            99975 222   466778889999999999999887643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.67  E-value=3.6e-08  Score=96.70  Aligned_cols=101  Identities=15%  Similarity=0.250  Sum_probs=73.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc--C----ccCCH------HHHHHHHHHHHhCCCEEEcCCeee
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--A----RLFTP------KIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l--~----~~~~~------~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      ++|+|||||+.|+.+|..|++.  |.+|+++++.+.+.  +    ..+..      ++.....+.+++.|++++.+++|+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  89999999987643  1    00111      111113466788999999999999


Q ss_pred             EEEEcCCCcEEEEE-cCCCcEEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~-~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +++. ++.. ..+. ..++.++.+|.+|+|+|.+|...
T Consensus        83 ~id~-~~~~-v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDV-ENQL-IAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEET-TTTE-EEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEEC-CCCE-EEEEecCceEEEEcCEEEECCCcccCCC
Confidence            9985 3332 2332 23567899999999999988754

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.66  E-value=1.5e-07  Score=87.26  Aligned_cols=99  Identities=18%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc---cc--------C---ccCCHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---CM--------A---RLFTPKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~---~l--------~---~~~~~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      -.|+|||||+.|+.+|..|+++|.+|+|+++...   ++        |   ....+++.........+.++.+..+..+.
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKS   86 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeee
Confidence            4799999999999999999999999999997531   10        1   11235677777777888888888887766


Q ss_pred             EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      .... ...   .+...+++++.+|.+|+|||.+|...
T Consensus        87 ~~~~-~~~---~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           87 VEDK-GEY---KVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EEEC-SSC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eeee-ecc---eeeccCCeEEEeceeEEcccCccCcC
Confidence            6543 222   34456788999999999999887654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.66  E-value=1.5e-07  Score=95.04  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------------------------------cCC-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFT-   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~-   82 (358)
                      .+|+|||+|.+|+.+|..|++.|.+|+|+|+.+.+...                                      ..+ 
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP  206 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            58999999999999999999999999999987643210                                      001 


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC
Q 018320           83 ------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  114 (358)
Q Consensus        83 ------------------------------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~  114 (358)
                                                                      ..+...+.+.+++.||+++++++|+++..+++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  286 (571)
T 1y0p_A          207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  286 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence                                                            23445566667788999999999999987444


Q ss_pred             CcEEEEEcC--CCc--EEecCeEEEeeCCCCC-hhhh
Q 018320          115 GKVVAVNLR--DGN--RLPTDMVVVGIGIRPN-TSLF  146 (358)
Q Consensus       115 g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~-~~l~  146 (358)
                      +++..+.+.  +|+  ++.+|.||+|+|.... .+++
T Consensus       287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~  323 (571)
T 1y0p_A          287 GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV  323 (571)
T ss_dssp             SCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             CeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHH
Confidence            776656554  565  6899999999997643 4443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.65  E-value=4.2e-08  Score=99.44  Aligned_cols=104  Identities=15%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc----------CccC-CH--HHHHHHHHHHHhCCCEEEcCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM----------ARLF-TP--KIASYYEEYYKSKGVKFVKGT  104 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l----------~~~~-~~--~~~~~~~~~l~~~gV~v~~~~  104 (358)
                      ..++|+|||||+.|+.+|..|++.  |.+|+++++.+.+.          ...+ +.  .+...+....++.|+++++++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            457999999999999999999998  89999999987631          1101 11  122334555668899999999


Q ss_pred             eeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320          105 VLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       105 ~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      .|++++. ++..+....+.+|+  ++.+|.+|+|+|.+|...
T Consensus       115 ~V~~id~-~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINK-EEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEEC-CCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            9999985 33333222234566  789999999999887643

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.65  E-value=3.5e-08  Score=95.59  Aligned_cols=100  Identities=21%  Similarity=0.326  Sum_probs=76.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCc--EEEEeeCCccc------C-ccC-----CHHHHHHHHHHHHhCCCEEEcCCee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKIN--VTMVFPEAHCM------A-RLF-----TPKIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~--Vtlv~~~~~~l------~-~~~-----~~~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      .++|+|||||+.|+.+|..|++.|.+  |+++++.+.+.      . ..+     ..++.....+.+++.||+++.++++
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            46899999999999999999999987  99999876531      1 001     1112222346677899999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++++.  +.+  .+.+.+|+++.+|.+|+|+|.+|...
T Consensus        89 ~~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~~~~~  122 (415)
T 3lxd_A           89 VSLDP--AAH--TVKLGDGSAIEYGKLIWATGGDPRRL  122 (415)
T ss_dssp             EEEET--TTT--EEEETTSCEEEEEEEEECCCEECCCC
T ss_pred             EEEEC--CCC--EEEECCCCEEEeeEEEEccCCccCCC
Confidence            99975  232  46778899999999999999887654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.62  E-value=6.4e-08  Score=95.40  Aligned_cols=102  Identities=23%  Similarity=0.278  Sum_probs=64.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcc------cCccCC------HHH-------HHHHHHHHHhCCCE
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC------MARLFT------PKI-------ASYYEEYYKSKGVK   99 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~------l~~~~~------~~~-------~~~~~~~l~~~gV~   99 (358)
                      .++|+|||||+.|+.+|..|++.  |.+|+|+++.+.+      ++..+.      .++       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  9999999998764      111111      111       11222222357999


Q ss_pred             EEcCCeeeEEEEcCCCcEEEEE-cCCCc--EEecCeEEEeeCCCCChh
Q 018320          100 FVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       100 v~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.++++++++. ++..+ .+. +.+|+  ++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~V~~id~-~~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDR-AAHTV-EIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEEC-CCCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999985 33333 333 33465  799999999999877643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.62  E-value=6.6e-08  Score=94.70  Aligned_cols=100  Identities=22%  Similarity=0.308  Sum_probs=70.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc------CccC-----CHHHHHHHHHHH-HhCCCEEEcCCee
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF-----TPKIASYYEEYY-KSKGVKFVKGTVL  106 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l------~~~~-----~~~~~~~~~~~l-~~~gV~v~~~~~v  106 (358)
                      .++|+|||||+.|+.+|..|++.  |.+|+++++.+.+.      +..+     ..++.....+.+ ++.||++++++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            46899999999999999999998  78999999987531      1111     011112222334 6789999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++++.  +.  ..+.+.++ .++.+|.+|+|||.+|...
T Consensus        83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            99853  22  34666666 4899999999999887643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.61  E-value=1.4e-07  Score=90.36  Aligned_cols=101  Identities=18%  Similarity=0.178  Sum_probs=76.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc------cCcc-----------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------MARL-----------------------------------   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~------l~~~-----------------------------------   80 (358)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+..      ....                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            47999999999999999999999999999987641      0000                                   


Q ss_pred             -----------------CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-CCCc--EEecCeEEEeeCC
Q 018320           81 -----------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGI  139 (358)
Q Consensus        81 -----------------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~  139 (358)
                                       ++ .++.+.+.+.+.+.|++++.+++|++++.++++.+ .+++ .+|+  ++.+|.||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                             01 23445566667778999999999999986433322 4555 6786  7999999999998


Q ss_pred             CCCh
Q 018320          140 RPNT  143 (358)
Q Consensus       140 ~p~~  143 (358)
                      .+..
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.60  E-value=7.8e-08  Score=94.31  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=75.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-----CcEEEEeeCCcccC-------c-------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCMA-------R-------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-----~~Vtlv~~~~~~l~-------~-------------------------------   79 (358)
                      +|+|||||+.|+.+|..|++.|     .+|+++|+.+.+.-       .                               
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            7999999999999999999999     99999998874210       0                               


Q ss_pred             ----------c--CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC-CcE--EEEEcCCCc----EEecCeEEEeeCCC
Q 018320           80 ----------L--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKV--VAVNLRDGN----RLPTDMVVVGIGIR  140 (358)
Q Consensus        80 ----------~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-g~v--~~v~~~~g~----~i~~D~vi~a~G~~  140 (358)
                                .  ...++.+++....++.+++++++++|++++.+++ +..  ..+.+.+|.    ++.+|.||+|+|..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence                      0  0133445555555667899999999999986321 322  256666665    89999999999988


Q ss_pred             CChh
Q 018320          141 PNTS  144 (358)
Q Consensus       141 p~~~  144 (358)
                      |...
T Consensus       192 p~~p  195 (463)
T 3s5w_A          192 PRIP  195 (463)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            7643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.60  E-value=2.1e-07  Score=88.58  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      .+...+.+.+++.|++++.+++|++++.+ ++.+ .+.+.+| ++.+|.||+|+|..+.
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG  220 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH
Confidence            35566677788899999999999999863 4444 5677666 8999999999998643

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.59  E-value=3e-07  Score=86.52  Aligned_cols=56  Identities=18%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRP  141 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p  141 (358)
                      +...+.+.+++.|++++++++|++++.++++.+ .+.+.+|  .++.+|.||+|+|...
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcch
Confidence            334456677788999999999999987544433 4677777  4899999999999763

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.58  E-value=3.8e-07  Score=87.18  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------cCCHHHH------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIA------------------------------   86 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------~~~~~~~------------------------------   86 (358)
                      ||+|||||+.|+-+|..|++.|.+|+|+|+.+.+...      .+.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            7999999999999999999999999999987654221      0111110                              


Q ss_pred             -----------------------------HHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320           87 -----------------------------SYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  136 (358)
Q Consensus        87 -----------------------------~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  136 (358)
                                                   ..+.+.|.+ .+.++++++++++++.++++.+ .+++.||+++.+|+||-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA  161 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA  161 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence                                         112233322 3456888999999987666654 688999999999999999


Q ss_pred             eCCCCCh
Q 018320          137 IGIRPNT  143 (358)
Q Consensus       137 ~G~~p~~  143 (358)
                      -|.++..
T Consensus       162 DG~~S~v  168 (412)
T 4hb9_A          162 DGSNSKV  168 (412)
T ss_dssp             CCTTCHH
T ss_pred             CCCCcch
Confidence            9987643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.58  E-value=2e-07  Score=87.37  Aligned_cols=165  Identities=16%  Similarity=0.146  Sum_probs=103.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCcc-------------------------------------C
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL-------------------------------------F   81 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~-------------------------------------~   81 (358)
                      ..+|+|||||+.|+.+|..|++.  |.+|+|+++.+.+....                                     .
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~  144 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH  144 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence            34899999999999999999998  99999999865442100                                     0


Q ss_pred             CHHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcC--C-C--cEEEEEcC--------------CCcEEec-----------
Q 018320           82 TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDS--N-G--KVVAVNLR--------------DGNRLPT-----------  130 (358)
Q Consensus        82 ~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~--~-g--~v~~v~~~--------------~g~~i~~-----------  130 (358)
                      ..++...+.+.+.+ .||+++.++.++++..++  + +  ++..+...              ++.++.+           
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence            13344555666666 499999999999997643  3 4  66666542              3457899           


Q ss_pred             ----CeEEEeeCCCCCh-hhhhc-cccc-ccC-------------c-EEEecccc-CCCCcEEEEcccccccccccCccc
Q 018320          131 ----DMVVVGIGIRPNT-SLFEG-QLTL-EKG-------------G-IKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETR  188 (358)
Q Consensus       131 ----D~vi~a~G~~p~~-~l~~~-~~~~-~~g-------------~-i~vd~~~~-t~~~~VyAiGD~~~~~~~~~g~~~  188 (358)
                          +.||.|+|..... .++.. ...+ ..+             . ..|+..-. +-.|++|++|-.+..-.   |.++
T Consensus       225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~r  301 (326)
T 2gjc_A          225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELD---GLNR  301 (326)
T ss_dssp             STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHH---TCCB
T ss_pred             cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhc---CCCC
Confidence                9999999976443 23221 1110 000             0 11111112 15799999999875422   3333


Q ss_pred             ccccHHHHHHHHHHHHHHHc
Q 018320          189 RLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       189 ~~~~~~~A~~~g~~aa~~i~  208 (358)
                      .-+....-...|+.||+.|+
T Consensus       302 ~g~~fg~m~~sg~~~a~~~~  321 (326)
T 2gjc_A          302 MGPTFGAMALSGVHAAEQIL  321 (326)
T ss_dssp             CCSCCHHHHHHHHHHHHHHH
T ss_pred             CChhhhhhhhhhHHHHHHHH
Confidence            33333334457888887765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.57  E-value=3.8e-07  Score=91.59  Aligned_cols=98  Identities=16%  Similarity=0.238  Sum_probs=75.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------Cc------------cCC----------------HHH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------AR------------LFT----------------PKI   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------~~------------~~~----------------~~~   85 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.        |.            .+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999875431        10            011                334


Q ss_pred             HHHHHHHHHhCC--CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           86 ASYYEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        86 ~~~~~~~l~~~g--V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                      .+++....++.+  ++++++++|++++.++++....|++.+|+++.+|.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            555555556655  679999999999875544445677888989999999999995

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.57  E-value=2.7e-07  Score=90.45  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=77.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--c----------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--R----------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--~----------------------------------------   79 (358)
                      .+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..  .                                        
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999998764210  0                                        


Q ss_pred             ---------cCC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCc--EEecCeEEEeeCCCCCh
Q 018320           80 ---------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        80 ---------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~  143 (358)
                               .++ .++.+.+.+.+.+.|++++.+++|+++.. +++.+..+++.   +|+  ++.+|.||.|+|..+..
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                     000 23556667777788999999999999986 34555445443   675  79999999999987654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.56  E-value=3.5e-07  Score=87.60  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      +...+.+.+++.|++++.+++|++++. +++.+..+++.+| ++.+|.||+|+|...
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            344456667788999999999999987 3555666777777 799999999999764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.56  E-value=3.3e-07  Score=93.19  Aligned_cols=99  Identities=15%  Similarity=0.160  Sum_probs=76.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-cc-----------------------Cc------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-~l-----------------------~~------------------   79 (358)
                      -+|+|||||.+|+++|..|++.|.+|+|+++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4799999999999999999999999999998631 10                       00                  


Q ss_pred             -----------cCC-HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           80 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        80 -----------~~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                                 .+| ..+...+.+.+++ .|++++ ++.|+.+.. +++.+..|.+.+|.++.+|.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       011 1345566677777 699995 678999976 456777788888988999999999998764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.55  E-value=4.6e-07  Score=91.61  Aligned_cols=120  Identities=18%  Similarity=0.164  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhcC--CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------
Q 018320           27 ADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------   80 (358)
Q Consensus        27 ~da~~i~~~l~~~--~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------   80 (358)
                      .|...++..+...  ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+....                        
T Consensus       110 ~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~  189 (572)
T 1d4d_A          110 ADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKK  189 (572)
T ss_dssp             SSHHHHHHHHHSCCCEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCT
T ss_pred             ccHHHHHHHhhccCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCH
Confidence            4566666666531  24589999999999999999999999999999875432100                        


Q ss_pred             --------------C-------------------------------------------------CHHHHHHHHHHHHhCC
Q 018320           81 --------------F-------------------------------------------------TPKIASYYEEYYKSKG   97 (358)
Q Consensus        81 --------------~-------------------------------------------------~~~~~~~~~~~l~~~g   97 (358)
                                    .                                                 ...+...+.+.+++.|
T Consensus       190 ~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~g  269 (572)
T 1d4d_A          190 QIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRG  269 (572)
T ss_dssp             HHHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcC
Confidence                          0                                                 1133455566677889


Q ss_pred             CEEEcCCeeeEEEEcCCCcEEEEEcC--CCc--EEecCeEEEeeCCCCC-hhhh
Q 018320           98 VKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPN-TSLF  146 (358)
Q Consensus        98 V~v~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~vi~a~G~~p~-~~l~  146 (358)
                      |++++++.++++..++++++..+.+.  +|+  ++.+|.||+|+|..+. .+++
T Consensus       270 v~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~  323 (572)
T 1d4d_A          270 TDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV  323 (572)
T ss_dssp             CEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             CeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHH
Confidence            99999999999976332676666554  564  6899999999997764 3444

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.55  E-value=9.2e-08  Score=96.30  Aligned_cols=102  Identities=17%  Similarity=0.119  Sum_probs=71.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCc----------cC-CH--HHHHHHHHHHHhCCCEEEcCCee
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR----------LF-TP--KIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~----------~~-~~--~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      ++|+|||||+.|+.+|..|++.  +.+|+++++.+.+.-.          .. ++  .+........++.|++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5899999999999999999998  8899999998764210          00 00  01112233344579999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      ++++. +...+....+.+|+  ++.+|.+|+|||.+|...
T Consensus        82 ~~id~-~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDR-AAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEET-TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEC-CCCEEEEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            99985 33333222233454  789999999999887653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.54  E-value=5.8e-07  Score=85.51  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ..+.+.+++.|++++.+++|++++.+ ++.+..+++.+| ++.+|.||+|+|..+
T Consensus       153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          153 TAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhH
Confidence            33556677889999999999999873 455555777777 899999999999764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.54  E-value=4.3e-07  Score=87.27  Aligned_cols=102  Identities=18%  Similarity=0.242  Sum_probs=73.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------CCH----H----------H--------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTP----K----------I--------------   85 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------~~~----~----------~--------------   85 (358)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..+.      +.+    +          +              
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            35689999999999999999999999999999876432110      000    0          0              


Q ss_pred             ----------------------HHHHHHHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           86 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        86 ----------------------~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                                            ...+.+.|.+  .+++++++++|++++.++++  ..+++.+|+++.+|.||.|.|..+
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK--WTLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS--EEEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE--EEEEECCCcEEecCEEEECCCcch
Confidence                                  0112222322  13678999999999875443  357888998999999999999876


Q ss_pred             Ch
Q 018320          142 NT  143 (358)
Q Consensus       142 ~~  143 (358)
                      ..
T Consensus       183 ~v  184 (398)
T 2xdo_A          183 KV  184 (398)
T ss_dssp             SC
T ss_pred             hH
Confidence            53

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.53  E-value=4.9e-07  Score=91.69  Aligned_cols=100  Identities=24%  Similarity=0.241  Sum_probs=77.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-cc-----------------------Cc------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-~l-----------------------~~------------------   79 (358)
                      -+|+|||||..|+++|..+++.|.+|+|+++.+. +.                       ..                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            5799999999999999999999999999998631 10                       00                  


Q ss_pred             -----------cCC-HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           80 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        80 -----------~~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                                 ..| ..+...+.+.+++ .||+++ +..|+++.. +++.+..|.+.+|.++.+|.||+|+|..++.
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                       001 1244556667777 599995 678999876 5667777888899999999999999987654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.53  E-value=3.3e-07  Score=88.28  Aligned_cols=100  Identities=20%  Similarity=0.300  Sum_probs=74.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------   79 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------   79 (358)
                      +..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                                        
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            3568999999999999999999999999999987643100                                        


Q ss_pred             --c---CC-----------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320           80 --L---FT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        80 --~---~~-----------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                        .   ++                 ..+.+.+.+.+.+  ++++++++|++++.++++  ..+++.+|+++.+|.||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG--VTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE--EEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCc--EEEEEcCCCEEeeCEEEECC
Confidence              0   00                 1123334444433  889999999999874443  45788899999999999999


Q ss_pred             CCCCCh
Q 018320          138 GIRPNT  143 (358)
Q Consensus       138 G~~p~~  143 (358)
                      |.....
T Consensus       178 G~~S~v  183 (407)
T 3rp8_A          178 GSHSAL  183 (407)
T ss_dssp             CTTCSS
T ss_pred             CcChHH
Confidence            987655

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.53  E-value=1.5e-07  Score=91.06  Aligned_cols=101  Identities=25%  Similarity=0.320  Sum_probs=73.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccCc--cCCHHHH-HHH-H----HHHHhCCCEEEcCCeeeEEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR--LFTPKIA-SYY-E----EYYKSKGVKFVKGTVLSSFD  110 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~~--~~~~~~~-~~~-~----~~l~~~gV~v~~~~~v~~i~  110 (358)
                      ..+++|||||+.|+.+|..|++.|.  +|+++++.+.+.-.  .+...+. ... .    +.+++.||+++.+++++.++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   86 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   86 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence            4689999999999999999999998  49999998753210  0111111 000 0    03556799999999999997


Q ss_pred             EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320          111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  145 (358)
Q Consensus       111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l  145 (358)
                      .  +.+  .+.+.+|+++.+|.+|+|+|.+|....
T Consensus        87 ~--~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~  117 (408)
T 2gqw_A           87 P--QAH--TVALSDGRTLPYGTLVLATGAAPRALP  117 (408)
T ss_dssp             T--TTT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred             C--CCC--EEEECCCCEEECCEEEECCCCCCCCCC
Confidence            5  222  466778889999999999999887543

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.52  E-value=8.3e-07  Score=89.97  Aligned_cols=102  Identities=22%  Similarity=0.319  Sum_probs=79.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC------CCcEEEEeeCCcccCc------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMAR------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~------g~~Vtlv~~~~~~l~~------------------------------------   79 (358)
                      -+|+|||||++|+.+|..|++.      |.+|+|+|+.+.+...                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999999      9999999987533110                                    


Q ss_pred             --------cC---C--------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC------CC---
Q 018320           80 --------LF---T--------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------DG---  125 (358)
Q Consensus        80 --------~~---~--------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~------~g---  125 (358)
                              .+   +              ..+...+.+.+++.||++++++.++++..++++.+..|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   0              13455667777888999999999999987666777667665      33   


Q ss_pred             ------cEEecCeEEEeeCCCCCh
Q 018320          126 ------NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       126 ------~~i~~D~vi~a~G~~p~~  143 (358)
                            .++.+|.||.|.|.++..
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGHL  219 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHH
T ss_pred             cccCCceEEECCEEEEeeCCCchH
Confidence                  689999999999988753

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.51  E-value=7.3e-07  Score=90.44  Aligned_cols=101  Identities=20%  Similarity=0.249  Sum_probs=78.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.....                                         
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            578999999999999999999999999999986311000                                         


Q ss_pred             ---------------------cCC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CC--cEEecCeEE
Q 018320           80 ---------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVV  134 (358)
Q Consensus        80 ---------------------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~vi  134 (358)
                                           .++ ..+...+.+.+++.||+++.+++|++++.+ ++....|.+. +|  .++.+|.||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                                 011 245566777778899999999999999863 3444566666 66  579999999


Q ss_pred             EeeCCCCC
Q 018320          135 VGIGIRPN  142 (358)
Q Consensus       135 ~a~G~~p~  142 (358)
                      .|+|..+.
T Consensus       182 ~AdG~~S~  189 (591)
T 3i3l_A          182 DAGGSGGP  189 (591)
T ss_dssp             ECCGGGCH
T ss_pred             ECCCCcch
Confidence            99998664

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.50  E-value=4.6e-07  Score=85.12  Aligned_cols=95  Identities=18%  Similarity=0.289  Sum_probs=69.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh---CCCcEEEEeeCCcccCc-------------------cC---CH---HH--------
Q 018320           42 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR-------------------LF---TP---KI--------   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~---~g~~Vtlv~~~~~~l~~-------------------~~---~~---~~--------   85 (358)
                      .+|+|||||++|+.+|..|++   .|.+|+|+|+.+.+..+                   .+   +.   ..        
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            379999999999999999999   99999999987432110                   00   00   11        


Q ss_pred             ------------------------------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320           86 ------------------------------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  135 (358)
Q Consensus        86 ------------------------------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~  135 (358)
                                                    ...++...++.|+++++++.|++|+.++++  ..+.+.+|+++.+|.||+
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vV~  159 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTGSPEQFDLIVL  159 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS--EEEEESSSCCEEESEEEE
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEE
Confidence                                          111222223348999999999999875444  357788888899999999


Q ss_pred             eeC
Q 018320          136 GIG  138 (358)
Q Consensus       136 a~G  138 (358)
                      |++
T Consensus       160 A~p  162 (342)
T 3qj4_A          160 TMP  162 (342)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            986

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.49  E-value=1.6e-07  Score=91.97  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=72.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc--C--------ccC-C-HHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--A--------RLF-T-PKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l--~--------~~~-~-~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      ++++|||||+.|+.+|..|++.  |.+|+|+++.+.+.  +        ... + .++.....+.+++.||+++.++.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            3799999999999999999998  99999999987531  0        000 1 1112223456778899999999999


Q ss_pred             EEEEcCCCcEEEEEc-CCCc--EEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      .++. ++..+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus        81 ~i~~-~~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           81 AIQP-KEHQV-TVKDLVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             EEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEeC-CCCEE-EEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence            9875 23332 3332 3465  489999999999887653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.48  E-value=5.2e-07  Score=90.27  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=76.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------------------   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------------------   78 (358)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                                           
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            5799999999999999999999999999998653200                                           


Q ss_pred             ------------c-----------------cC-CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCc--EEEEEcCCC-
Q 018320           79 ------------R-----------------LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK--VVAVNLRDG-  125 (358)
Q Consensus        79 ------------~-----------------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~--v~~v~~~~g-  125 (358)
                                  .                 .+ ...+...+.+.+++.|+++++++++++++.++++.  -..+++.++ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                        0                 00 12345566777788899999999999998755410  234555555 


Q ss_pred             --cEEecCeEEEeeCCCCC
Q 018320          126 --NRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       126 --~~i~~D~vi~a~G~~p~  142 (358)
                        .++.+|.||.|.|....
T Consensus       166 ~~~~i~a~~vV~AdG~~S~  184 (535)
T 3ihg_A          166 GEYDLRAGYLVGADGNRSL  184 (535)
T ss_dssp             EEEEEEEEEEEECCCTTCH
T ss_pred             CeEEEEeCEEEECCCCcch
Confidence              67999999999998763

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.48  E-value=9.1e-08  Score=94.11  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-------cCcc-CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-------l~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+       +|.. ++.++.....+.+++.||++++++.+..   
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  197 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR---  197 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc---
Confidence            3578999999999999999999999999999998765       2221 4567777778889999999999986520   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                             .+.+.++ .+.+|.|++|+|..
T Consensus       198 -------~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 -------DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             -------TBCHHHH-HSSCSEEEECCCCC
T ss_pred             -------EEEhhHh-HhhCCEEEEecCCC
Confidence                   1222222 36799999999986

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.45  E-value=1.1e-06  Score=89.42  Aligned_cols=101  Identities=14%  Similarity=0.283  Sum_probs=76.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-cc-----------------------Cc-----------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR-----------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-~l-----------------------~~-----------------   79 (358)
                      .-+|+|||||..|+++|..|++.|.+|+|+++.+. +.                       +.                 
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~  100 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN  100 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence            35899999999999999999999999999998631 10                       00                 


Q ss_pred             ------------cCCH-HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           80 ------------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        80 ------------~~~~-~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                                  ..|. .+...+.+.+++ .||+++. ..|+.+.. +++.+..|.+.+|.++.+|.||+|+|..++.
T Consensus       101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~  176 (641)
T 3cp8_A          101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLNG  176 (641)
T ss_dssp             SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBTC
T ss_pred             cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCCc
Confidence                        0111 345556667777 4999975 48888875 4566666888889999999999999987653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.45  E-value=4.8e-07  Score=88.37  Aligned_cols=101  Identities=15%  Similarity=0.206  Sum_probs=69.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccC-c---------cC-CHH--HHHHHHHHHHhCCCEEEcCCeee
Q 018320           43 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA-R---------LF-TPK--IASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~-~---------~~-~~~--~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                      ||+|||||+.|+.+|..|+++|  .+|+|+++.+...- +         .. +..  +....++.+++.||+++.+++|+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            6999999999999999999988  57999998765311 0         00 000  00112345677899999999999


Q ss_pred             EEEEcCCCcEEEEEcC--CCcEEecCeEEEeeCCCCChh
Q 018320          108 SFDVDSNGKVVAVNLR--DGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       108 ~i~~~~~g~v~~v~~~--~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +++. +...+......  ++.++.+|.+|+|||.+|+..
T Consensus        82 ~id~-~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p  119 (437)
T 4eqs_A           82 AIND-ERQTVSVLNRKTNEQFEESYDKLILSPGASANSL  119 (437)
T ss_dssp             EEET-TTTEEEEEETTTTEEEEEECSEEEECCCEEECCC
T ss_pred             EEEc-cCcEEEEEeccCCceEEEEcCEEEECCCCccccc
Confidence            9975 33322222222  234689999999999988754

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.44  E-value=9.6e-07  Score=83.57  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      ...+.+.+++.|++++.+++|++++.++++  ..+++.+| ++.+|.||+|+|..
T Consensus       152 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~a~~vV~a~G~~  203 (372)
T 2uzz_A          152 IKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADG-EYQAKKAIVCAGTW  203 (372)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCC-eEEcCEEEEcCCcc
Confidence            344556677889999999999999874443  34666666 59999999999964

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.43  E-value=1.7e-06  Score=86.24  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc--------cCc----------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MAR----------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~--------l~~----------------------------------   79 (358)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+..        .+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            58999999999999999999999999999987511        000                                  


Q ss_pred             -------------------cCC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE--EEcCCCc--EEecCeEEE
Q 018320           80 -------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA--VNLRDGN--RLPTDMVVV  135 (358)
Q Consensus        80 -------------------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~--v~~~~g~--~i~~D~vi~  135 (358)
                                         .++ ..+...+.+.+++.||+++.+++|+++.. +++.+..  +...+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                               001 23455666777789999999999999987 4555433  4455674  799999999


Q ss_pred             eeCCCCCh
Q 018320          136 GIGIRPNT  143 (358)
Q Consensus       136 a~G~~p~~  143 (358)
                      |+|..+..
T Consensus       167 AdG~~S~v  174 (512)
T 3e1t_A          167 ASGNRTRV  174 (512)
T ss_dssp             CCCTTCSS
T ss_pred             CCCcchHH
Confidence            99987643

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.42  E-value=5.5e-09  Score=103.29  Aligned_cols=143  Identities=13%  Similarity=0.076  Sum_probs=92.7

Q ss_pred             EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH--------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCC
Q 018320           44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI--------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  115 (358)
Q Consensus        44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~--------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g  115 (358)
                      ++++|+|  ++++++.++..|..+ +.++++++++. ++++.        +..+.+.+++.|. ++++.+.  +   + .
T Consensus       215 ~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~---~-~  283 (472)
T 2e5v_A          215 VTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I---E-D  283 (472)
T ss_dssp             EECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C---T-T
T ss_pred             EEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h---H-H
Confidence            4556776  899999999999888 88889999876 45543        5666677766653 3322110  0   0 0


Q ss_pred             cEEEEEcCCCcEEe-cCeEEEeeCCCCChhhhhcc--cccccCcEEEeccccCCCCcEEEEcccccccccccCcccccc-
Q 018320          116 KVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE-  191 (358)
Q Consensus       116 ~v~~v~~~~g~~i~-~D~vi~a~G~~p~~~l~~~~--~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~-  191 (358)
                            +  .+.++ .+.++++.|..|+ +++.-.  .....|+|.||+++||++|+|||+|||+...  .+|.. ++. 
T Consensus       284 ------~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~--~hg~~-rl~~  351 (472)
T 2e5v_A          284 ------F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSG--LHGAN-RLAS  351 (472)
T ss_dssp             ------H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECS--SSTTS-CCTT
T ss_pred             ------H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcccc--cCCCC-CCCc
Confidence                  1  02333 4777888999999 554422  1225799999999999999999999998832  11222 112 


Q ss_pred             -cHHHHHHHHHHHHHHHcC
Q 018320          192 -HVDSARKSAKHAVAAIME  209 (358)
Q Consensus       192 -~~~~A~~~g~~aa~~i~g  209 (358)
                       ....+...|+.|+.++.+
T Consensus       352 ~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          352 NSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             HHHHHHHHHHHHGGGTTTS
T ss_pred             ccHHHHHHHHHHHHHHHHh
Confidence             233455567777777654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.42  E-value=1.8e-06  Score=88.94  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ..+.+.+++.|++++++++|+++..+++ . ..+++.+|.++.+|.||+|+|...
T Consensus       421 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~-~-v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          421 RNVLELAQQQGLQIYYQYQLQNFSRKDD-C-WLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEETT-E-EEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEeCC-e-EEEEECCCCEEECCEEEECCCcch
Confidence            3345556678999999999999987443 3 367777888899999999999753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.42  E-value=3.3e-07  Score=90.54  Aligned_cols=101  Identities=21%  Similarity=0.295  Sum_probs=71.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc-Cc-----c-----CC-HHHHHHHHHHH-HhCCCEEEcCCee
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM-AR-----L-----FT-PKIASYYEEYY-KSKGVKFVKGTVL  106 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l-~~-----~-----~~-~~~~~~~~~~l-~~~gV~v~~~~~v  106 (358)
                      ++++|||||+.|+.+|..|++.  |.+|+|+++.+.+. ..     .     .+ .++.....+.+ ++.||+++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5899999999999999999986  89999999986531 00     0     00 11111123445 3459999999999


Q ss_pred             eEEEEcCCCcEEEEEc-CCCc--EEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      +.++. ++..+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus       117 ~~i~~-~~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          117 TKVDT-EKKIV-YAEHTKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEC-CCCEE-EEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence            99975 23333 3433 4566  799999999999887643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.42  E-value=2e-07  Score=91.39  Aligned_cols=100  Identities=13%  Similarity=0.165  Sum_probs=71.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc----------CccC---CH-HHHHHHHHHHHhCCCEEEcCCee
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM----------ARLF---TP-KIASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l----------~~~~---~~-~~~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      +++|||||+.|+.+|..|++.  |.+|+|+++.+.+.          ...+   ++ ++...+.+.+++.||+++.++.+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            699999999999999999998  99999999987521          1101   11 11122345677889999999999


Q ss_pred             eEEEEcCCCcEEEEEc-CC--CcEEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNL-RD--GNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~-~~--g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ..++.+ +..+ .+.. .+  +.++.+|.+|+|+|.+|...
T Consensus        82 ~~i~~~-~~~v-~v~~~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           82 TNVDPE-TKTI-KVKDLITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             EEEEGG-GTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEcC-CCEE-EEEecCCCceEEEECCEEEEccCCCcCCC
Confidence            998752 3332 2332 12  45799999999999887653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.41  E-value=6.7e-07  Score=90.35  Aligned_cols=99  Identities=18%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------------------------------------Cc----c
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------------------AR----L   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------------------------------------~~----~   80 (358)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                                     ..    .
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999999999999854321                                     00    0


Q ss_pred             ---------------C-CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc--CCC-cEEecCeEEEeeCCCC
Q 018320           81 ---------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDG-NRLPTDMVVVGIGIRP  141 (358)
Q Consensus        81 ---------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~--~~g-~~i~~D~vi~a~G~~p  141 (358)
                                     + ...+...+.+.+++.|++++.+++|++++.++++.  .+++  .+| +++.+|.||.|.|.++
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                           0 12355667777777899999999999998755553  3555  678 7899999999999876


Q ss_pred             C
Q 018320          142 N  142 (358)
Q Consensus       142 ~  142 (358)
                      .
T Consensus       208 ~  208 (570)
T 3fmw_A          208 T  208 (570)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.40  E-value=2.3e-06  Score=81.36  Aligned_cols=55  Identities=22%  Similarity=0.457  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      +...+.+.+++.|++++.+++|++++.++++  ..+++.+| ++.+|.||+|+|..++
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          152 CIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWNS  206 (389)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--EEEEeCCC-EEEeCEEEEecCccHH
Confidence            3445566777889999999999999874443  34666555 7999999999997643

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.40  E-value=2.6e-06  Score=84.62  Aligned_cols=101  Identities=21%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------c-----------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------L-----------------   80 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------~-----------------   80 (358)
                      ...+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                      .                 
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            3468999999999999999999999999999986432100                      0                 


Q ss_pred             ---C-----------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc---EEecCeEEEeeCCCCC
Q 018320           81 ---F-----------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPN  142 (358)
Q Consensus        81 ---~-----------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~vi~a~G~~p~  142 (358)
                         +           ...+.+.+.+.+++.|++++.++++++++.++++ + .+++.++.   ++.+|.||.|.|.+..
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCcccH
Confidence               0           1235566667777889999999999999875554 3 46666664   7999999999998764

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.40  E-value=3.2e-06  Score=84.60  Aligned_cols=56  Identities=16%  Similarity=0.335  Sum_probs=44.9

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ..+.+.+++.|++++.+ +|++++.++++.+..+.+.+|+++.+|.||.|+|..+..
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            34455566789999999 899998756666667888888889999999999986654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.39  E-value=1.4e-06  Score=86.10  Aligned_cols=50  Identities=24%  Similarity=0.379  Sum_probs=41.9

Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      .+.+++.|++|++++.|++|.. +++++..|++.||+++.+|.||++++..
T Consensus       228 ~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          228 IKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            3456678999999999999987 5678888999999999999999987743

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.39  E-value=2e-07  Score=92.80  Aligned_cols=100  Identities=19%  Similarity=0.351  Sum_probs=68.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-----C----ccCCHH-HHHHHHHHH--HhCCCEEEcCCeeeEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-----A----RLFTPK-IASYYEEYY--KSKGVKFVKGTVLSSF  109 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-----~----~~~~~~-~~~~~~~~l--~~~gV~v~~~~~v~~i  109 (358)
                      +||||||||+.|+.+|..|.+.+.+||||++.++..     +    ..++++ +...+.+.+  ++.+++++.+ ++++|
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I  121 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI  121 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence            489999999999999999999999999999987532     1    112221 111223332  2457888864 68888


Q ss_pred             EEcCCCcEEEEE------------------cCCCcEEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVN------------------LRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~------------------~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +.+ ...+ .+.                  ..++.++++|.+|+|+|.+|+..
T Consensus       122 D~~-~k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          122 NPD-RNTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EGG-GTEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             Ehh-hCEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            752 2222 222                  24567899999999999988764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.38  E-value=1e-06  Score=86.66  Aligned_cols=98  Identities=22%  Similarity=0.237  Sum_probs=70.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------cCCH-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~~-   83 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+...                                     .++. 
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA   82 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            47999999999999999999999999999998643100                                     0111 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChh
Q 018320           84 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  144 (358)
                      +           +...+.+.+++.||+++.++.+ .++  . .. ..+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~--~-~~-~~v~~~~G~~~~~~~d~lviAtG~~p~~p  151 (468)
T 2qae_A           83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FET--A-HS-IRVNGLDGKQEMLETKKTIIATGSEPTEL  151 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEE--T-TE-EEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eee--C-CE-EEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence            1           1112345567789999988754 343  2 22 34666777  6899999999999887654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.37  E-value=2.7e-06  Score=82.54  Aligned_cols=54  Identities=22%  Similarity=0.235  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhCCCEEEcCC---eeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           86 ASYYEEYYKSKGVKFVKGT---VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~---~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      ...+.+.+++.|+++++++   +|+++.. +++.+..|++.+|+++.+|.||+|+|..
T Consensus       164 ~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          164 LVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCC
Confidence            3445566677899999999   9999986 4566666888899899999999999964

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.37  E-value=2.9e-06  Score=84.27  Aligned_cols=101  Identities=23%  Similarity=0.319  Sum_probs=77.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC----------------------cc-----------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------RL-----------------   80 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~----------------------~~-----------------   80 (358)
                      +..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                      .+                 
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID   89 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence            456899999999999999999999999999998643210                      00                 


Q ss_pred             ---C-----------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc---EEecCeEEEeeCCCCC
Q 018320           81 ---F-----------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPN  142 (358)
Q Consensus        81 ---~-----------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~vi~a~G~~p~  142 (358)
                         +           ...+.+.+.+.+++.|++++.++++++++.++++ + .+++.++.   ++.+|.||.|.|.+..
T Consensus        90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A           90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG-V-TVEVRGPEGKHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE-E-EEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred             cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe-E-EEEEEcCCCCEEEEeCEEEECCCcchH
Confidence               0           0234556667777889999999999999875443 3 46666664   7999999999998764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.36  E-value=1.2e-06  Score=86.23  Aligned_cols=98  Identities=22%  Similarity=0.258  Sum_probs=71.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------cCCHH-H-----
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------LFTPK-I-----   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------~~~~~-~-----   85 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...                              .++.. +     
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            47999999999999999999999999999976654211                              01111 0     


Q ss_pred             -----H--HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE--EecCeEEEeeCCCCChh
Q 018320           86 -----A--SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        86 -----~--~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~  144 (358)
                           .  ..+.+.+++.||+++.+ .+..++.  + . ..+.+.+|++  +.+|.+|+|+|.+|...
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~--~-~-~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP--T-H-VIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET--T-E-EEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEecC--C-e-EEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                 1  33344556679999987 5666642  2 2 4567778888  99999999999887653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.36  E-value=1.3e-06  Score=84.36  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=74.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCcccCcc----CC---------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARL----FT---------------------------------   82 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~l~~~----~~---------------------------------   82 (358)
                      ..+|+|||||++|+.+|..|++.|.+ |+|+|+.+.+.+..    +.                                 
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35899999999999999999999999 99999876431100    00                                 


Q ss_pred             -----------------------HHHHHHHHHHHHh-CC-CEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCe
Q 018320           83 -----------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDM  132 (358)
Q Consensus        83 -----------------------~~~~~~~~~~l~~-~g-V~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~  132 (358)
                                             .++.+.+.+.+.+ .| ++++++++|++++. +++  ..+.+.+   |  .++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RVLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EEEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cEEEEecCCCCCceEEecCE
Confidence                                   1334455566655 35 68999999999987 454  2355544   6  5799999


Q ss_pred             EEEeeCCCCCh
Q 018320          133 VVVGIGIRPNT  143 (358)
Q Consensus       133 vi~a~G~~p~~  143 (358)
                      ||.|.|..+..
T Consensus       161 vV~AdG~~S~v  171 (410)
T 3c96_A          161 LVGADGIHSAV  171 (410)
T ss_dssp             EEECCCTTCHH
T ss_pred             EEECCCccchh
Confidence            99999987654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.35  E-value=7.8e-07  Score=87.46  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=71.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------------CCHH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FTPK   84 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------------~~~~   84 (358)
                      ..+++|||||+.|+.+|..|++.|.+|+++++.+.+....                                    ++..
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   85 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            4689999999999999999999999999999986431100                                    0110


Q ss_pred             ------------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChh
Q 018320           85 ------------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  144 (358)
                                  +...+.+.+++.||+++.++.+. ++  . .. ..+.+.+|  .++.+|.+|+|+|.+|...
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~--~-~~-~~v~~~~G~~~~i~~d~lIiAtGs~p~~p  154 (470)
T 1dxl_A           86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VS--P-SE-ISVDTIEGENTVVKGKHIIIATGSDVKSL  154 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EE--T-TE-EEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ec--C-CE-EEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence                        11123455667899999998653 43  2 22 34656677  6899999999999887654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.34  E-value=1.7e-06  Score=81.83  Aligned_cols=51  Identities=10%  Similarity=-0.011  Sum_probs=40.3

Q ss_pred             HHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           88 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        88 ~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      .+.+.+++.|+++++++.|++++.+++ . ..|++.+| ++.+|.||+|+|...
T Consensus       159 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          159 GYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhH
Confidence            345566778999999999999987443 3 56777777 899999999999643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.32  E-value=1.3e-06  Score=85.47  Aligned_cols=97  Identities=22%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCCHH--
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTPK--   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~~~--   84 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++. .+...                                   .++.+  
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHH
Confidence            47999999999999999999999999999987 22100                                   01111  


Q ss_pred             ----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCChh
Q 018320           85 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~  144 (358)
                                +...+.+.+++.||+++.++.+. ++   .+. ..+.+.+| +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-id---~~~-v~V~~~~G~~~i~~d~lViATGs~p~~~  148 (455)
T 1ebd_A           83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-VD---ANT-VRVVNGDSAQTYTFKNAIIATGSRPIEL  148 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-EE---TTE-EEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-cc---CCe-EEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence                      12223556778899999987543 43   222 35666677 6899999999999887654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.32  E-value=4.7e-06  Score=82.90  Aligned_cols=64  Identities=20%  Similarity=0.277  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-Cc--EEecC-eEEEeeCCCC-Chhhhh
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPTD-MVVVGIGIRP-NTSLFE  147 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~D-~vi~a~G~~p-~~~l~~  147 (358)
                      .+...+.+.+++.||++++++.++++..++++++..|...+ ++  ++.+| .||+|+|.-. |.++++
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~  271 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIE  271 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHH
Confidence            34455566677889999999999999875468877776643 32  58996 9999999665 444443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.32  E-value=1.6e-06  Score=85.24  Aligned_cols=99  Identities=22%  Similarity=0.264  Sum_probs=68.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc--------------------------ccCc---------cCC-HH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------------------------CMAR---------LFT-PK   84 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~--------------------------~l~~---------~~~-~~   84 (358)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++.+.                          ..+.         ..+ ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK   83 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence            46899999999999999999999999999998730                          0110         011 11


Q ss_pred             HHH-------H-----HHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChh
Q 018320           85 IAS-------Y-----YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ~~~-------~-----~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  144 (358)
                      +..       .     +.+.+++. ||+++.+. +..++   .+. ..+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p  153 (467)
T 1zk7_A           84 LLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFKD---DQS-LTVRLNEGGERVVMFDRCLVATGASPAVP  153 (467)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEEE---TTE-EEEEETTSSEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEcc---CCE-EEEEeCCCceEEEEeCEEEEeCCCCCCCC
Confidence            111       1     12345556 99999874 55554   222 35666777  6799999999999887643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.31  E-value=1.5e-06  Score=86.84  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------------CccC-----CH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------------ARLF-----TP   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------------------------~~~~-----~~   83 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+.                                 +...     ..
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  123 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIK  123 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhHH
Confidence            579999999999999999999999999999987321                                 1111     11


Q ss_pred             HHHHHH----H---HHH-----HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           84 KIASYY----E---EYY-----KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ~~~~~~----~---~~l-----~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      ++...+    .   +.+     ++.||++++...++.++.   .   .+.+. ++++.+|.+|+|+|.+|...
T Consensus       124 ~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~---~---~v~~~-g~~~~~d~lViATGs~p~~p  189 (523)
T 1mo9_A          124 EVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN---H---TVEAA-GKVFKAKNLILAVGAGPGTL  189 (523)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET---T---EEEET-TEEEEBSCEEECCCEECCCC
T ss_pred             HHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC---C---EEEEC-CEEEEeCEEEECCCCCCCCC
Confidence            222222    2   455     778999996667777752   2   24444 77899999999999888654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.31  E-value=4.2e-06  Score=86.41  Aligned_cols=51  Identities=10%  Similarity=0.068  Sum_probs=39.9

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeCCCC
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRP  141 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p  141 (358)
                      +.+.+++.|++++++++|++++.++++  ..+++.+|. ++.+|.||+|+|...
T Consensus       418 L~~~a~~~Gv~i~~~t~V~~l~~~~~~--v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          418 LMMLAQQNGMTCHYQHELQRLKRIDSQ--WQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECSSS--EEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHhCCCEEEeCCeEeEEEEeCCe--EEEEeCCCcEEEECCEEEECCCcch
Confidence            445556789999999999999874444  357777887 899999999999753

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.30  E-value=6.6e-07  Score=88.80  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------c--C---CHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------L--F---TPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------~--~---~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      .+|+|||||+.|+.+|..|++. .+|+|+++.+.+...       .  +   ..++...+.+.+ +.|+++++++.+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            5799999999999999999999 999999998765211       0  1   123333333334 669999999999988


Q ss_pred             EEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      ..+ +..+......+++  ++.+|.+|+|+|..|...
T Consensus       187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            763 3333222224454  689999999999877643

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.30  E-value=5.7e-06  Score=83.12  Aligned_cols=55  Identities=24%  Similarity=0.407  Sum_probs=44.4

Q ss_pred             HHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           88 YYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        88 ~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      .+.+.+++. ||+++.+ +|++++.++++.+..+.+.+|+++.+|.||.|+|..+..
T Consensus       199 ~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          199 FLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence            344555666 9999999 999998756677777888889889999999999976644

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.29  E-value=3.6e-07  Score=90.71  Aligned_cols=99  Identities=20%  Similarity=0.363  Sum_probs=70.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc------CccC--CHH--HHHH--------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF--TPK--IASY--------------------   88 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l------~~~~--~~~--~~~~--------------------   88 (358)
                      ..+++|||||+.|+.+|..|++.  |.+|+||++.+.+.      ...+  ...  ..+.                    
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            35799999999999999999887  88999999986531      1000  000  0000                    


Q ss_pred             HH--HH---HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           89 YE--EY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        89 ~~--~~---l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      +.  +.   +.+.||+++.++.+++++.+ +.   .|.+.+|+++.+|.+|+|||.+|..
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~-~~---~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEECC
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECC-CC---EEEECCCCEEECCEEEECCCCCCCC
Confidence            00  00   12468999999999999752 22   4667889999999999999998874

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.29  E-value=2.7e-06  Score=83.84  Aligned_cols=96  Identities=22%  Similarity=0.263  Sum_probs=68.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------cCCH-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~~-   83 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+...                                     .++. 
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA   85 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            47999999999999999999999999999996533100                                     0111 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cE------EecCeEEEeeCCCCC
Q 018320           84 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NR------LPTDMVVVGIGIRPN  142 (358)
Q Consensus        84 ~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~------i~~D~vi~a~G~~p~  142 (358)
                      +           +...+.+.+++.||+++.++.+..    +.+. ..+.+.+|  ++      +.+|.||+|+|.+|.
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~----~~~~-v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~  158 (478)
T 1v59_A           86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE----DETK-IRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT  158 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES----SSSE-EEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc----cCCe-EEEEecCCCcccccccceEEeCEEEECcCCCCC
Confidence            1           111234566778999999876531    2222 45666666  56      999999999998874

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.28  E-value=4.8e-06  Score=78.46  Aligned_cols=166  Identities=13%  Similarity=0.106  Sum_probs=104.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCc---------------------------------c----C
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR---------------------------------L----F   81 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~---------------------------------~----~   81 (358)
                      ..+|+|||||+.|+.+|..|+++  |.+|+|+++.+.+...                                 .    .
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            35899999999999999999997  9999999987543200                                 0    0


Q ss_pred             CHHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCC----------------C--cEEEEEcC--------------CCcEE
Q 018320           82 TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSN----------------G--KVVAVNLR--------------DGNRL  128 (358)
Q Consensus        82 ~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~----------------g--~v~~v~~~--------------~g~~i  128 (358)
                      ..+..+.+.+.+.+ .|++++.++.++++..+++                +  ++..+...              ++.++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            13344556666666 5999999999999865332                2  55555431              23479


Q ss_pred             ecCeEEEeeCCCCCh-hh-hhc----cccc-ccCcEEEe---------ccccCCCCcEEEEcccccccccccCccccccc
Q 018320          129 PTDMVVVGIGIRPNT-SL-FEG----QLTL-EKGGIKVT---------GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH  192 (358)
Q Consensus       129 ~~D~vi~a~G~~p~~-~l-~~~----~~~~-~~g~i~vd---------~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~  192 (358)
                      .++.||.|+|..... .+ .+.    .+.. ..|.-..+         ++-+--+|++|++|-.+...   .|.+++-|.
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~---~g~~rmgp~  315 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEI---DGANRMGPT  315 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHH---HTCEECCSC
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhh---cCCCCCCcc
Confidence            999999999977552 11 111    1110 01111111         01111369999999887642   345554454


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 018320          193 VDSARKSAKHAVAAIME  209 (358)
Q Consensus       193 ~~~A~~~g~~aa~~i~g  209 (358)
                      ...=...|+.||+.|+.
T Consensus       316 fg~m~~sg~~~a~~~~~  332 (344)
T 3jsk_A          316 FGAMALSGVKAAHEAIR  332 (344)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cceeeecCHHHHHHHHH
Confidence            44445678888877653

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.27  E-value=7e-06  Score=79.08  Aligned_cols=55  Identities=24%  Similarity=0.341  Sum_probs=41.8

Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                      .+.+++.|+++++++.|++|.. +++++..|.+ +|+++.+|.||+++|......++
T Consensus       203 ~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          203 ETVISANGGKIHTGQEVSKILI-ENGKAAGIIA-DDRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEE-TTEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHcCCEEEECCceeEEEE-ECCEEEEEEE-CCEEEECCEEEECCCHHHHHHhc
Confidence            3456678999999999999987 4556655665 47889999999999865444443

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.27  E-value=6.1e-06  Score=81.59  Aligned_cols=97  Identities=22%  Similarity=0.238  Sum_probs=68.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cCC--
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFT--   82 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~~--   82 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...                                    .++  
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  104 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQ  104 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHH
Confidence            368999999999999999999999999999986553110                                    000  


Q ss_pred             ----------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCC
Q 018320           83 ----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        83 ----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~  142 (358)
                                ..+...+...+++.+|+++.+... .+   +.+. ..+...+|  .++.+|.+|+|||.+|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~---~~~~-~~v~~~~g~~~~~~~d~lViATGs~p~  171 (491)
T 3urh_A          105 KMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGK-VL---GQGK-VSVTNEKGEEQVLEAKNVVIATGSDVA  171 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EC---SSSE-EEEECTTSCEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee---cCCE-EEEEeCCCceEEEEeCEEEEccCCCCC
Confidence                      011122344567789999987532 22   2333 35666677  57999999999998864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.26  E-value=2.4e-06  Score=84.17  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=69.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------cCCH-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~~-   83 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+...                                     .++. 
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   86 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLD   86 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCHH
Confidence            57999999999999999999999999999998643110                                     0111 


Q ss_pred             H-----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-C-cEEecCeEEEeeCCCCChh
Q 018320           84 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G-NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g-~~i~~D~vi~a~G~~p~~~  144 (358)
                      .           +...+.+.+++.||+++.++.+ .++  . +. ..+.+.+ + +++.+|.+|+|+|.+|...
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~--~-~~-~~v~~~~gg~~~~~~d~lViAtGs~p~~p  155 (474)
T 1zmd_A           87 KMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-ITG--K-NQ-VTATKADGGTQVIDTKNILIATGSEVTPF  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EEE--T-TE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Eec--C-CE-EEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence            1           1112345667889999988643 332  2 22 3566666 4 5799999999999887654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.25  E-value=1.6e-06  Score=84.88  Aligned_cols=96  Identities=23%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------cCCH-H---
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LFTP-K---   84 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~~~~-~---   84 (358)
                      +++|||||+.|+.+|..|++.|.+|+|+++.+.+...                                  .++. +   
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   82 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALMA   82 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHHH
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHHH
Confidence            6999999999999999999999999999998643100                                  0111 1   


Q ss_pred             --------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           85 --------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 --------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                              +...+.+.+++.||+++.++.+. +   +... ..+.+ +|+++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~-i---~~~~-~~v~~-~g~~~~~d~lviAtG~~p~~~  144 (455)
T 2yqu_A           83 HKDKVVQANTQGVEFLFKKNGIARHQGTARF-L---SERK-VLVEE-TGEELEARYILIATGSAPLIP  144 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-S---SSSE-EEETT-TCCEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e---cCCe-EEEee-CCEEEEecEEEECCCCCCCCC
Confidence                    11123455677899999886532 2   2222 33444 678899999999999887653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.25  E-value=8.5e-06  Score=77.90  Aligned_cols=49  Identities=18%  Similarity=0.261  Sum_probs=37.4

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      +.+.+++.|++++++++|++++.+++ .+ .+.+.++ ++.+|.||+|+|..
T Consensus       159 l~~~a~~~Gv~i~~~~~V~~i~~~~~-~v-~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          159 LFTLAQAAGATLRAGETVTELVPDAD-GV-SVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEETT-EE-EEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEcCC-eE-EEEECCC-EEEcCEEEEcCCcC
Confidence            44556678999999999999986433 33 4555554 79999999999975

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.24  E-value=1.9e-06  Score=85.19  Aligned_cols=93  Identities=17%  Similarity=0.248  Sum_probs=67.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCC----
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT----   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~----   82 (358)
                      .+|+|||||+.|+.+|..|+++|.+|+|+|+.. +...                                   .++    
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~  105 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEKL  105 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            489999999999999999999999999999842 1100                                   011    


Q ss_pred             --------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CCcEEecCeEEEeeCCCCC
Q 018320           83 --------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        83 --------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p~  142 (358)
                              ..+...+...+++.+|+++.+ .+..++   ..   .+.+. +++++.+|.+++|+|.+|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~---~~---~v~v~~~~~~~~~d~lviAtG~~p~  167 (484)
T 3o0h_A          106 VAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD---EH---TLELSVTGERISAEKILIATGAKIV  167 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE---TT---EEEETTTCCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee---CC---EEEEecCCeEEEeCEEEEccCCCcc
Confidence                    122334456677889999987 444453   22   34444 7789999999999998877

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.24  E-value=1.5e-06  Score=83.15  Aligned_cols=99  Identities=14%  Similarity=0.176  Sum_probs=70.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcc------cCccC----CH-HHHH-HHHHHHHhCCCEEEcCCee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC------MARLF----TP-KIAS-YYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~------l~~~~----~~-~~~~-~~~~~l~~~gV~v~~~~~v  106 (358)
                      ..+++|||||+.|+.+|..|++.|  .+|+++++.+..      ++..+    .+ ++.. .+.+.+++.||+++.++.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            368999999999999999999998  568999876422      11111    11 1211 2345567889999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                      +.++.+ +.   .+.+.+ .++.+|.+|+|+|.+|...
T Consensus        84 ~~i~~~-~~---~v~~~~-~~~~~d~lviAtG~~p~~p  116 (384)
T 2v3a_A           84 TGIDPG-HQ---RIWIGE-EEVRYRDLVLAWGAEPIRV  116 (384)
T ss_dssp             CEEEGG-GT---EEEETT-EEEECSEEEECCCEEECCC
T ss_pred             EEEECC-CC---EEEECC-cEEECCEEEEeCCCCcCCC
Confidence            998752 22   344443 5799999999999887653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.23  E-value=3e-06  Score=90.70  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=71.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-------C----CHHHHHHHHHHHHhC-CCEEEcCCeeeEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-------F----TPKIASYYEEYYKSK-GVKFVKGTVLSSF  109 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-------~----~~~~~~~~~~~l~~~-gV~v~~~~~v~~i  109 (358)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+....       +    ..+....+.+.+.+. +|++++++.|.++
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i  208 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS  208 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence            579999999999999999999999999999976542111       1    133444555566664 9999999999888


Q ss_pred             EEcCCCcEEEEEc---------------CCCcEEecCeEEEeeCCCCCh
Q 018320          110 DVDSNGKVVAVNL---------------RDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       110 ~~~~~g~v~~v~~---------------~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ..  ++.+..+..               .++.++.+|.||+|||.+|..
T Consensus       209 ~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          209 YD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             ET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             ec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            63  333222211               112368999999999987754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.23  E-value=1.9e-06  Score=84.67  Aligned_cols=95  Identities=24%  Similarity=0.388  Sum_probs=67.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCCH--
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTP--   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~~--   83 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+ +...                                   .++.  
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPR   82 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence            3589999999999999999999999999999873 2100                                   0111  


Q ss_pred             ----------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           84 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                .+...+.+.+++.||+++.++. ..++   ..   .+.+ +|+++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~i~---~~---~v~~-~g~~~~~d~lviAtGs~p~~p  145 (463)
T 2r9z_A           83 LVAGRDRYIGAINSFWDGYVERLGITRVDGHA-RFVD---AH---TIEV-EGQRLSADHIVIATGGRPIVP  145 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCE-EEEE---TT---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEE-EEcc---CC---EEEE-CCEEEEcCEEEECCCCCCCCC
Confidence                      1112234456778999998853 4443   22   2444 677899999999999887653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.23  E-value=4.4e-06  Score=82.86  Aligned_cols=101  Identities=21%  Similarity=0.268  Sum_probs=71.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccC-----------------------------c--------cC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMA-----------------------------R--------LF   81 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~-----------------------------~--------~~   81 (358)
                      .+|+|||||+.|+.+|..|++.   |.+|+|+++.+ +..                             .        .+
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            4799999999999999999999   99999999885 100                             0        01


Q ss_pred             CHH------------HHHHHHHHHHhCCCEEEcCCeeeEEEEcC--CCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320           82 TPK------------IASYYEEYYKSKGVKFVKGTVLSSFDVDS--NGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        82 ~~~------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      +..            +...+.+.+++.||+++.++ ++.++..+  ++....+.+.+|+  ++.+|.+|+|+|.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p  159 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL  159 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            111            12224566778899999885 55553200  0123456667776  799999999999888654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.23  E-value=4.8e-07  Score=97.45  Aligned_cols=94  Identities=21%  Similarity=0.347  Sum_probs=72.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      +++|+|||||+.|+.+|..|++.|. +|+|+++.+.+..       . .++.+......+.+++.||++++++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            4689999999999999999999999 7999999865421       1 13456666667788999999999987631   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCC-CCCh
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  143 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~  143 (358)
                         .   .+.+.++.++.+|.||+|||. +|..
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~~  290 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPKT  290 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCCC
Confidence               1   133445556889999999998 4754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.22  E-value=4e-06  Score=82.22  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=66.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------------------------------Cc------cCCH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------------------------AR------LFTP   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------------------------------~~------~~~~   83 (358)
                      .+++|||||+.|+.+|..|++.|.+|+++++. .+.                                ..      .++.
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccCH
Confidence            58999999999999999999999999999984 320                                00      0111


Q ss_pred             -HH-----------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           84 -KI-----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        84 -~~-----------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                       ++           ...+.+.+++.||+++.++.+. ++   +.   .+.+.+ +++.+|.+|+|||.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~---~~---~v~v~~-~~~~~d~lviATGs~p~~  148 (458)
T 1lvl_A           85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD---GK---QVEVDG-QRIQCEHLLLATGSSSVE  148 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE---TT---EEEETT-EEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc---CC---EEEEee-EEEEeCEEEEeCCCCCCC
Confidence             11           1113356678899999887643 32   22   344544 789999999999998864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.22  E-value=1.2e-05  Score=80.15  Aligned_cols=55  Identities=11%  Similarity=0.209  Sum_probs=43.5

Q ss_pred             HHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           88 YYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        88 ~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      .+.+.+++ .||+++.+ +|++++.++++.+..+++.+|.++.+|.||.|+|..+..
T Consensus       180 ~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          180 LLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            34455566 79999999 699998755666667888888889999999999987653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.22  E-value=4.2e-06  Score=82.56  Aligned_cols=97  Identities=22%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------------------C--cc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------------------A--RL   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------------------------------~--~~   80 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+ +.                                       +  ..
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   90 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLT   90 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGCC
T ss_pred             CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccCc
Confidence            589999999999999999999999999999864 10                                       0  00


Q ss_pred             CCH------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320           81 FTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        81 ~~~------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                      ++.            .+...+.+.+++.||+++.++ +..+   +... ..+.+.+|+  ++.+|.+|+|+|.+|...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i---~~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           91 FNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN---KDGN-VEVQKRDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC---TTSC-EEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe---eCCE-EEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            111            111233455677899999874 4444   2233 345566776  799999999999887654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.22  E-value=3.3e-07  Score=90.16  Aligned_cols=91  Identities=14%  Similarity=0.176  Sum_probs=69.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCccc--------Ccc-CCHHHHHHHHHHHHhCCCEEEcCCeeeE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM--------ARL-FTPKIASYYEEYYKSKGVKFVKGTVLSS  108 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~  108 (358)
                      .+++++|||+|+.|+.+|..|++.|  .+|+|+++.+.+.        |.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3579999999999999999999998  9999999987764        211 123456667778888999999987652 


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                          .     .+.+.+ .++.+|.||+|||..|
T Consensus        84 ----~-----~V~~~~-~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ----R-----DVTVQE-LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             ----T-----TBCHHH-HHHHSSEEEECCCCCE
T ss_pred             ----e-----EEEecc-ceEEcCEEEEecCcCC
Confidence                1     123333 3478999999999875

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.21  E-value=4.5e-06  Score=81.89  Aligned_cols=97  Identities=18%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCCHH--
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTPK--   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~~~--   84 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+ +...                                   .++.+  
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIA   82 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHH
Confidence            479999999999999999999999999999872 1100                                   00110  


Q ss_pred             ----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChh
Q 018320           85 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        85 ----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~  144 (358)
                                +...+.+.+++.||+++.++.+. +   ++.. ..+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i---d~~~-v~V~~~~G~~~~~~~d~lViAtG~~~~~~  149 (464)
T 2a8x_A           83 YDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A---DANT-LLVDLNDGGTESVTFDNAIIATGSSTRLV  149 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S---SSSE-EEEEETTSCCEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e---cCCe-EEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence                      11223456777899999887543 2   2332 35666777  6899999999999887643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.21  E-value=1.5e-06  Score=86.25  Aligned_cols=95  Identities=20%  Similarity=0.342  Sum_probs=60.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------Cc-------------------------cCC-----
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------AR-------------------------LFT-----   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------~~-------------------------~~~-----   82 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+ +.         |.                         .++     
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLV   81 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHHH
Confidence            479999999999999999999999999999874 10         00                         011     


Q ss_pred             -------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-------------CcEEecCeEEEeeCCCCC
Q 018320           83 -------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------------GNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        83 -------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-------------g~~i~~D~vi~a~G~~p~  142 (358)
                             ..+...+.+.+++.||+++.++. ..++   ..   .+.+.+             +.++.+|.+|+|+|.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~id---~~---~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~  154 (500)
T 1onf_A           82 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTA-SFLS---EN---RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCC-CCC--------------------------------CBSSEEECCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEee---CC---EEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence                   11122234556788999998854 2332   11   222222             567999999999999887


Q ss_pred             hh
Q 018320          143 TS  144 (358)
Q Consensus       143 ~~  144 (358)
                      ..
T Consensus       155 ~p  156 (500)
T 1onf_A          155 FP  156 (500)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.21  E-value=2.2e-06  Score=82.67  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCc------------c-cCccC-------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH------------C-MARLF-------------------------   81 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~------------~-l~~~~-------------------------   81 (358)
                      .+|+|||||.+|+.+|..|+++  |.+|+|+++...            + .+..+                         
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  116 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTL  116 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCCC
Confidence            4799999999999999999999  999999998531            1 01000                         


Q ss_pred             --------------------C----------------------------------HHHHHHHHHHHHhCCCEEEcCCeee
Q 018320           82 --------------------T----------------------------------PKIASYYEEYYKSKGVKFVKGTVLS  107 (358)
Q Consensus        82 --------------------~----------------------------------~~~~~~~~~~l~~~gV~v~~~~~v~  107 (358)
                                          +                                  ..+...+.+.+++.|++++.+++|+
T Consensus       117 ~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~  196 (405)
T 3c4n_A          117 EVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAE  196 (405)
T ss_dssp             CEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEE
T ss_pred             cEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence                                0                                  1244556667778899999999999


Q ss_pred             ---------EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320          108 ---------SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus       108 ---------~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                               +++.+ ++.+ .+.+.+| ++.+|.||+|+|...
T Consensus       197 ~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          197 LVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             EETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred             eccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccH
Confidence                     87642 3333 5666565 899999999999764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.20  E-value=1.1e-05  Score=77.92  Aligned_cols=53  Identities=19%  Similarity=0.337  Sum_probs=40.1

Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                      .+.+++.|+++++++.|++|+. +++.+  + ..+|+++.+|.||+++|......++
T Consensus       196 ~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          196 ERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence            3445667999999999999986 44544  4 4678899999999999965444443

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.19  E-value=4.3e-06  Score=81.82  Aligned_cols=94  Identities=19%  Similarity=0.352  Sum_probs=66.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cCCH--
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP--   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~~~--   83 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+ +...                                    .++.  
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWET   83 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            579999999999999999999999999999873 2100                                    0010  


Q ss_pred             ----------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           84 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                .+...+...+++.||+++.++. +.++   ..   .+.+ +|+++.+|.+|+|+|.+|...
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~i~---~~---~v~~-~g~~~~~d~lviAtGs~p~~p  146 (450)
T 1ges_A           84 LIASRTAYIDRIHTSYENVLGKNNVDVIKGFA-RFVD---AK---TLEV-NGETITADHILIATGGRPSHP  146 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-EEEE---TT---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEec---CC---EEEE-CCEEEEeCEEEECCCCCCCCC
Confidence                      1112233455778999998854 4453   22   2444 678899999999999887653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.19  E-value=3.9e-06  Score=82.85  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-----------------------------------ccCCHH--
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-----------------------------------RLFTPK--   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-----------------------------------~~~~~~--   84 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+.+..                                   ..++.+  
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   86 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            4799999999999999999999999999998654310                                   001111  


Q ss_pred             ----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC------------cEEecCeEEEeeCCCCC
Q 018320           85 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------------NRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        85 ----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g------------~~i~~D~vi~a~G~~p~  142 (358)
                                +...+.+.+++.||+++.++.+. ++   ++. ..+.+.+|            .++.+|.+|+|+|.+|.
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~~-v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LD---PHH-LEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EE---TTE-EEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-cc---CCE-EEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence                      11123455677899999887543 22   222 23444455            57999999999998876


Q ss_pred             h
Q 018320          143 T  143 (358)
Q Consensus       143 ~  143 (358)
                      .
T Consensus       162 ~  162 (482)
T 1ojt_A          162 K  162 (482)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.18  E-value=4.7e-06  Score=81.91  Aligned_cols=94  Identities=19%  Similarity=0.217  Sum_probs=66.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------cCCH-HH-
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LFTP-KI-   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~~~~-~~-   85 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+ +...                                  .++. .+ 
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   85 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLG   85 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHHH
Confidence            579999999999999999999999999999875 1000                                  0111 11 


Q ss_pred             ----------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           86 ----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        86 ----------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                ...+.+.+++.||+++.++.+. ++   ..   .+.+. |+++.+|.+|+|||.+|...
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~---~v~v~-g~~~~~d~lViATGs~p~~p  146 (464)
T 2eq6_A           86 GWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG---PK---EVEVG-GERYGAKSLILATGSEPLEL  146 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE---TT---EEEET-TEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc---CC---EEEEc-cEEEEeCEEEEcCCCCCCCC
Confidence                      1112445677899999887543 42   22   24444 67899999999999988653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.17  E-value=1.8e-06  Score=88.89  Aligned_cols=87  Identities=21%  Similarity=0.320  Sum_probs=66.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----cC----C-HHHHHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LF----T-PKIASYYEEYYKSKGVKFVKGTVLSSFD  110 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----~~----~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~  110 (358)
                      .++|+|||||+.|+.+|..|++.|.+|+|+++.+.+...     .+    + .+....+.+.+++.||++++++.++.  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            478999999999999999999999999999998654211     01    1 23445566778888999998875421  


Q ss_pred             EcCCCcEEEEEcCCCcEE-ecCeEEEeeCCCCChh
Q 018320          111 VDSNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTS  144 (358)
Q Consensus       111 ~~~~g~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~  144 (358)
                                     ..+ .+|.||+|||.+|...
T Consensus       451 ---------------~~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---------------DQLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---------------SSSCCSSEEEECCCEEECCC
T ss_pred             ---------------HHhhcCCEEEEccCCCcCCC
Confidence                           123 8999999999987754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.17  E-value=7.5e-07  Score=92.04  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC---------cc-CCHHHHHHHHHHHHhC-CCEEEcCCeeeE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------RL-FTPKIASYYEEYYKSK-GVKFVKGTVLSS  108 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~---------~~-~~~~~~~~~~~~l~~~-gV~v~~~~~v~~  108 (358)
                      ..++|+|||||+.|+++|..|+++|.+|+|+++.+.+..         .. ...++...+.+.+.+. ||++++++.++ 
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-  468 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT-  468 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC-
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec-
Confidence            357899999999999999999999999999999765421         10 1235566777778886 99999886532 


Q ss_pred             EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                                   ..++.++.+|.+|+|+|.+|.
T Consensus       469 -------------~~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 -------------GDDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             -------------HHHHHHTTCCEEEECCCEEEC
T ss_pred             -------------HHHHhhcCCCEEEEcCCCccc
Confidence                         123456889999999998854

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.17  E-value=1.1e-05  Score=80.15  Aligned_cols=56  Identities=23%  Similarity=0.370  Sum_probs=45.0

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      ..+.+.+++.|++++.+ +|++++.++++.+..+++.+|+++.+|.||.|+|.....
T Consensus       177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            34455566689999999 999998756676677888889899999999999986543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.17  E-value=6.3e-07  Score=88.11  Aligned_cols=89  Identities=18%  Similarity=0.170  Sum_probs=68.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHh-C------CCcEEEEeeCCcccCc---------cCCHHHHHHHHHHHHhCCCEEEcCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVI-N------KINVTMVFPEAHCMAR---------LFTPKIASYYEEYYKSKGVKFVKGT  104 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~-~------g~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~~l~~~gV~v~~~~  104 (358)
                      +++|+|||||+.|+.+|..|.+ .      |.+|+|+++.+.+...         ....++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            5789999999999999999999 7      9999999998765421         1223566677777888899999885


Q ss_pred             eeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       105 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      .+      +.    .+.+.++ ++.+|.||+|+|..
T Consensus        83 ~v------~~----~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV------GE----HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB------TT----TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE------CC----EEEECCC-eEeCCEEEEeeCCC
Confidence            43      11    1334444 57899999999986

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.16  E-value=8.8e-06  Score=85.74  Aligned_cols=54  Identities=28%  Similarity=0.445  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ...+.+.+++.|++++.++.|++++. +++.+..+.+.+| ++.+|.||+|+|...
T Consensus       154 ~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          154 VQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence            34455667788999999999999986 3455556777776 799999999999754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.14  E-value=2e-06  Score=84.44  Aligned_cols=93  Identities=17%  Similarity=0.248  Sum_probs=66.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-----------------------------------ccCCH---
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-----------------------------------RLFTP---   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-----------------------------------~~~~~---   83 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+|+|+.. +..                                   ..++.   
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKL   84 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHH
Confidence            479999999999999999999999999999842 110                                   00111   


Q ss_pred             ---------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-CCCcEEecCeEEEeeCCCCC
Q 018320           84 ---------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        84 ---------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~~i~~D~vi~a~G~~p~  142 (358)
                               .+...+.+.+++.||+++.+ .+..+   +..   .+.+ .+++++.+|.+|+|+|.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i---~~~---~v~~~~~~~~~~~d~lviAtG~~p~  146 (463)
T 4dna_A           85 VAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA---GPN---TVKLLASGKTVTAERIVIAVGGHPS  146 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES---SSS---EEEETTTTEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe---eCC---EEEEecCCeEEEeCEEEEecCCCcc
Confidence                     12233455567789999987 33333   222   3444 57788999999999998877

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.10  E-value=1.5e-05  Score=78.46  Aligned_cols=98  Identities=18%  Similarity=0.290  Sum_probs=70.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-------------cCcc-----------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------MARL-----------------------------   80 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-------------l~~~-----------------------------   80 (358)
                      .|+|||+|..|+.+|..|++.|.+|+|+++...-             +...                             
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            4899999999999999999999999999986200             0000                             


Q ss_pred             --------------C----------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-
Q 018320           81 --------------F----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-  123 (358)
Q Consensus        81 --------------~----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-  123 (358)
                                    +                      ..++...+.+.+++.||+++.++.+ ++.. +++.+..+... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence                          0                      0123344555566789999999999 9876 35555555442 


Q ss_pred             CCcEEecCeEEEeeCCCCC
Q 018320          124 DGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       124 ~g~~i~~D~vi~a~G~~p~  142 (358)
                      ++.++.+|.||+|+|..+.
T Consensus       159 ~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TEEECCCSEEEECCCCCGG
T ss_pred             CCCeEEeeeEEECCCCCcc
Confidence            3335789999999997653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.10  E-value=3.6e-06  Score=83.37  Aligned_cols=98  Identities=23%  Similarity=0.261  Sum_probs=66.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEee--------CCcccCc---------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFP--------EAHCMAR---------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~--------~~~~l~~---------------------------------   79 (358)
                      .+++|||||+.|+.+|..|++ .|.+|+|+++        ...+...                                 
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   83 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            479999999999999999999 9999999992        2222110                                 


Q ss_pred             ----cCCH-HH-----------HHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEc---CCC---cEEecCeEEEe
Q 018320           80 ----LFTP-KI-----------ASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNL---RDG---NRLPTDMVVVG  136 (358)
Q Consensus        80 ----~~~~-~~-----------~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g---~~i~~D~vi~a  136 (358)
                          .++. ++           ...+.+.+++. ||+++.++ ++.++   ... ..+..   .+|   +++.+|.+|+|
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~---~~~-v~v~~~~~~~g~~~~~~~~d~lviA  158 (490)
T 1fec_A           84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQD---NHT-VLVRESADPNSAVLETLDTEYILLA  158 (490)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEE---TTE-EEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEee---CCE-EEEEeeccCCCCceEEEEcCEEEEe
Confidence                0111 11           12234456677 99999885 55554   222 23332   366   67999999999


Q ss_pred             eCCCCChh
Q 018320          137 IGIRPNTS  144 (358)
Q Consensus       137 ~G~~p~~~  144 (358)
                      ||.+|...
T Consensus       159 tGs~p~~p  166 (490)
T 1fec_A          159 TGSWPQHL  166 (490)
T ss_dssp             CCEEECCC
T ss_pred             CCCCCCCC
Confidence            99887653

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.08  E-value=2.3e-05  Score=77.70  Aligned_cols=55  Identities=15%  Similarity=0.082  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCc--EEecCeEEEeeCCCC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRP  141 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~~p  141 (358)
                      +...+.+.+++.|++++++++|+++..++  .+..+++   .+|+  ++.+|.||.|+|...
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            34455666778899999999999998643  3445665   3565  799999999999754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.07  E-value=3.3e-06  Score=83.75  Aligned_cols=96  Identities=26%  Similarity=0.282  Sum_probs=65.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEee--------CCcccCc---------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFP--------EAHCMAR---------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~--------~~~~l~~---------------------------------   79 (358)
                      .+++|||||+.|+.+|..|++ .|.+|+|+++        ...+...                                 
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~   87 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFD   87 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEECC
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcccC
Confidence            579999999999999999999 9999999992        2222100                                 


Q ss_pred             ----cCCH-HHH-----------HHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcC---C-----CcEEecCeEE
Q 018320           80 ----LFTP-KIA-----------SYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLR---D-----GNRLPTDMVV  134 (358)
Q Consensus        80 ----~~~~-~~~-----------~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~---~-----g~~i~~D~vi  134 (358)
                          .++. ++.           ..+...+++. ||+++.++ ++.++   ..   .+.+.   +     ++++.+|.+|
T Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~---~~---~v~v~~~~~~~~~~~~~~~~d~lV  160 (495)
T 2wpf_A           88 GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGW-GSLES---KN---VVVVRETADPKSAVKERLQADHIL  160 (495)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESE-EEEEE---TT---EEEEESSSSTTSCEEEEEEEEEEE
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeE-EEEee---CC---EEEEeecCCccCCCCeEEEcCEEE
Confidence                0111 111           1223445677 99999885 55553   22   23333   4     6689999999


Q ss_pred             EeeCCCCChh
Q 018320          135 VGIGIRPNTS  144 (358)
Q Consensus       135 ~a~G~~p~~~  144 (358)
                      +|||.+|...
T Consensus       161 iATGs~p~~p  170 (495)
T 2wpf_A          161 LATGSWPQMP  170 (495)
T ss_dssp             ECCCEEECCC
T ss_pred             EeCCCCcCCC
Confidence            9999887653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.07  E-value=1e-05  Score=79.54  Aligned_cols=97  Identities=21%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc----------------------------------Cc--------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------AR--------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l----------------------------------~~--------   79 (358)
                      -+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.                                  ..        
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~   83 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            479999999999999999999999999999875110                                  00        


Q ss_pred             cCCH------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCCh
Q 018320           80 LFTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        80 ~~~~------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~  143 (358)
                      .++.            .+...+...+++.||+++.+.... +   +... ..+...+|  .++.+|.+|+|+|.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~-~---~~~~-~~v~~~~g~~~~~~~d~lvlAtG~~p~~  156 (476)
T 3lad_A           84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL-L---AGKK-VEVTAADGSSQVLDTENVILASGSKPVE  156 (476)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE-C---STTC-EEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e---cCCE-EEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence            0010            112223345667799999875432 2   2232 35666777  579999999999988763

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.04  E-value=6.4e-06  Score=81.12  Aligned_cols=97  Identities=15%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-----------------------------------ccCCH--
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-----------------------------------RLFTP--   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-----------------------------------~~~~~--   83 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.. +..                                   ..++.  
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   98 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRV   98 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            3689999999999999999999999999999764 100                                   00111  


Q ss_pred             ----------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           84 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        84 ----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                .+...+...+++.||+++.+. +..+.  ...  ..+. .+++++.+|.+|+|+|.+|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~--~~~--~~v~-~~g~~~~~d~lviAtG~~p~~p  163 (478)
T 3dk9_A           99 IKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTS--DPK--PTIE-VSGKKYTAPHILIATGGMPSTP  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECS--CSS--CEEE-ETTEEEECSCEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEee--CCe--EEEE-ECCEEEEeeEEEEccCCCCCCC
Confidence                      122334455677899999875 22222  122  1233 4677899999999999887654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.04  E-value=1.6e-05  Score=79.26  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=66.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC--------cccC-----------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCMA-----------------------------------   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~--------~~l~-----------------------------------   78 (358)
                      .+|+|||||+.|+.+|..|++.|.+|+||++.+        .+..                                   
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~~  112 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE  112 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            489999999999999999999999999999843        1100                                   


Q ss_pred             -ccCCHH------------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCCh
Q 018320           79 -RLFTPK------------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        79 -~~~~~~------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~  143 (358)
                       ..++..            +...+...+++.+|+++.+. +..+.   ... ..+...+|+  ++.+|.+|+|||.+|..
T Consensus       113 ~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d---~~~-v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          113 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIG---PHR-IKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE---TTE-EEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEee---CCE-EEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence             001111            11122335667899999764 33343   222 346666664  79999999999988765


Q ss_pred             h
Q 018320          144 S  144 (358)
Q Consensus       144 ~  144 (358)
                      .
T Consensus       188 p  188 (519)
T 3qfa_A          188 L  188 (519)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.02  E-value=2.8e-06  Score=81.15  Aligned_cols=88  Identities=17%  Similarity=0.164  Sum_probs=68.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc-----------------------Cc-----------------
Q 018320           42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM-----------------------AR-----------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l-----------------------~~-----------------   79 (358)
                      ++|+|||||++|+.+|..|++.  |.+|+|+|+.+.+.                       ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3799999999999999999999  99999999875440                       00                 


Q ss_pred             --------------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           80 --------------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        80 --------------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                                    ....++.+.+.+.+++.|++++++++|++++.  .           +++.+|.||.|.|..+.
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCch
Confidence                          00135667777778888999999999888742  1           13689999999997653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.01  E-value=2.2e-05  Score=79.07  Aligned_cols=52  Identities=23%  Similarity=0.202  Sum_probs=39.6

Q ss_pred             HHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeCCC
Q 018320           88 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIR  140 (358)
Q Consensus        88 ~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~  140 (358)
                      .+.+.+++.|++++++++|+++.. +++.+..+++.+   |  .++.+|.||.|+|..
T Consensus       175 ~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          175 EIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            344556778999999999999987 455555566543   3  478999999999964

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.01  E-value=1.7e-05  Score=77.14  Aligned_cols=53  Identities=25%  Similarity=0.440  Sum_probs=40.8

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEc--------------CCCcEEEEEcCCCcEE--ecCeEEEeeCCC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVD--------------SNGKVVAVNLRDGNRL--PTDMVVVGIGIR  140 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~--------------~~g~v~~v~~~~g~~i--~~D~vi~a~G~~  140 (358)
                      ..+.+.+++.|++++.+++|++++.+              +++.+..+.+.+| ++  .+|.||+|+|..
T Consensus       185 ~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~  253 (448)
T 3axb_A          185 DYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVW  253 (448)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcC
Confidence            34455667789999999999999762              2345556777777 68  999999999965

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.00  E-value=2.2e-06  Score=89.12  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=59.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc--------CC--HHHHHHHHHHHHhC------CCEEEcCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL--------FT--PKIASYYEEYYKSK------GVKFVKGT  104 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~--------~~--~~~~~~~~~~l~~~------gV~v~~~~  104 (358)
                      .++|+|||||+.|+++|..|+++|.+|+|+++.+.+....        +.  ..+.+.+.+.++..      ++++..++
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~  468 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK  468 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence            5789999999999999999999999999999987643210        10  12333333333322      45544332


Q ss_pred             eeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320          105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus       105 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      .              +.+.++.++.+|.||+|||..|.
T Consensus       469 ~--------------v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          469 P--------------MTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             C--------------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred             E--------------EehhhccccCCCEEEEcCCCCcc
Confidence            1              23334556889999999998854

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.97  E-value=2.5e-05  Score=79.87  Aligned_cols=102  Identities=22%  Similarity=0.271  Sum_probs=75.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEeeCCcccC------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCMA------------------------------------------   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~~~~~l~------------------------------------------   78 (358)
                      .+|+|||||++|+.+|..|++ .|.+|+|+|+.+.+..                                          
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            479999999999999999999 9999999998643200                                          


Q ss_pred             --c---------------------cCC-HHHHHHHHHHHHhCCC--EEEcCCeeeEEEEcCC--CcEEEEEcC------C
Q 018320           79 --R---------------------LFT-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN--GKVVAVNLR------D  124 (358)
Q Consensus        79 --~---------------------~~~-~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~--g~v~~v~~~------~  124 (358)
                        .                     .++ ..+...+.+.+++.|+  +++.++++++++.+++  +....+++.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                     001 2455666777888876  9999999999987543  112334443      4


Q ss_pred             C--cEEecCeEEEeeCCCCCh
Q 018320          125 G--NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       125 g--~~i~~D~vi~a~G~~p~~  143 (358)
                      |  +++.+|.||.|.|.++..
T Consensus       193 G~~~~i~a~~vVgADG~~S~v  213 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARSNV  213 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTCHH
T ss_pred             CCeEEEEeCEEEECCCcchHH
Confidence            5  579999999999987653

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.94  E-value=3.3e-05  Score=77.54  Aligned_cols=97  Identities=20%  Similarity=0.300  Sum_probs=69.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------   79 (358)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                                          
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            47999999999999999999999999999986432100                                          


Q ss_pred             ---c---C---------------------C-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--c
Q 018320           80 ---L---F---------------------T-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--N  126 (358)
Q Consensus        80 ---~---~---------------------~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~  126 (358)
                         .   +                     + ..+.+.+.+.+++.   +++++++++++.++++ + .+++.+   |  .
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence               0   0                     0 12334444555444   8889999999875554 3 344443   6  4


Q ss_pred             EEecCeEEEeeCCCCCh
Q 018320          127 RLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       127 ~i~~D~vi~a~G~~p~~  143 (358)
                      ++.+|.||.|.|.++..
T Consensus       182 ~i~a~~vVgADG~~S~v  198 (549)
T 2r0c_A          182 AVHARYLVACDGASSPT  198 (549)
T ss_dssp             EEEEEEEEECCCTTCHH
T ss_pred             EEEeCEEEECCCCCcHH
Confidence            79999999999987653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.93  E-value=7e-05  Score=73.89  Aligned_cols=98  Identities=19%  Similarity=0.155  Sum_probs=65.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC--------ccc------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCM------------------------------------   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~--------~~l------------------------------------   77 (358)
                      -+++|||||+.|+.+|..|++.|.+|+||++.+        .+.                                    
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~~   86 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQ   86 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            479999999999999999999999999999621        110                                    


Q ss_pred             CccCCH-HH-----------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCCh
Q 018320           78 ARLFTP-KI-----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus        78 ~~~~~~-~~-----------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~  143 (358)
                      +..++. .+           ...+...+++.+|+++.+. +..+   +... ..+...+|  .++.+|.+|+|||.+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~---~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           87 PVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFV---DEHT-VRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEES---SSSE-EEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc---cCCe-EEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence            001121 11           1123345667899998663 3222   2222 35666666  479999999999988764


Q ss_pred             h
Q 018320          144 S  144 (358)
Q Consensus       144 ~  144 (358)
                      .
T Consensus       162 p  162 (488)
T 3dgz_A          162 P  162 (488)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.90  E-value=5.8e-05  Score=76.65  Aligned_cols=98  Identities=12%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccC-------------------------------ccCC------
Q 018320           42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA-------------------------------RLFT------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~-------------------------------~~~~------   82 (358)
                      -.|+|||+|..|+-+|..|++.|  .+|+|+++.+....                               ...+      
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            37999999999999999999999  99999998642200                               0001      


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcC
Q 018320           83 ------------------------------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDS  113 (358)
Q Consensus        83 ------------------------------------------------~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~  113 (358)
                                                                      ..+...+.+.+++.| |+++.++.++++.. +
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence                                                            122333444555677 99999999999986 3


Q ss_pred             CCcEEEEE---cCCCc--EEecCeEEEeeCCC
Q 018320          114 NGKVVAVN---LRDGN--RLPTDMVVVGIGIR  140 (358)
Q Consensus       114 ~g~v~~v~---~~~g~--~i~~D~vi~a~G~~  140 (358)
                      ++++..+.   +.+|+  .+.++.||+|+|..
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            56554443   35676  68999999999953

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.89  E-value=7e-05  Score=73.79  Aligned_cols=99  Identities=23%  Similarity=0.336  Sum_probs=65.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC---C----c--c--------------------------------cC-
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE---A----H--C--------------------------------MA-   78 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~---~----~--~--------------------------------l~-   78 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+||++.   +    .  +                                +. 
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   88 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNV   88 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            358999999999999999999999999999831   1    0  0                                00 


Q ss_pred             ---ccCCH-HHH-----------HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeCCCCC
Q 018320           79 ---RLFTP-KIA-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPN  142 (358)
Q Consensus        79 ---~~~~~-~~~-----------~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~  142 (358)
                         ..++. .+.           ..+...+++.+|+++.+.. .-+.   ... ..+.+.+|. ++.+|.+|+|||.+|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~---~~~-v~v~~~~g~~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           89 DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLG-SFVD---SHT-LLAKLKSGERTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEE-EEEE---TTE-EEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEcc---CCE-EEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence               01121 111           1122346678999987643 2222   222 356666774 7999999999998876


Q ss_pred             hh
Q 018320          143 TS  144 (358)
Q Consensus       143 ~~  144 (358)
                      ..
T Consensus       164 ~p  165 (483)
T 3dgh_A          164 YP  165 (483)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.89  E-value=0.00011  Score=74.28  Aligned_cols=52  Identities=12%  Similarity=0.098  Sum_probs=38.9

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCc--EEecCeEEEeeCCC
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR  140 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~~  140 (358)
                      +.+.+++.||++++++.++++..++++++..+..   .+|+  .+.++.||+|+|..
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            3444556799999999999998743566665553   4565  58999999999963

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.85  E-value=8e-05  Score=77.71  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcC---------------------CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320           14 GSDAENVCYLRDLADANRLVNVMKSC---------------------SGGNAVVIGGGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        14 G~~~~~v~~l~~~~da~~i~~~l~~~---------------------~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      +.+.++++.+++..+...++..+...                     ...+|+|||+|.+|+.+|..|++.|.+|+|+|+
T Consensus       288 ~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~  367 (776)
T 4gut_A          288 HIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEA  367 (776)
T ss_dssp             GCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCCCCGGGCSSCGGGTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             hcccccccccccHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            44556666666666666666554321                     135899999999999999999999999999998


Q ss_pred             CCcc
Q 018320           73 EAHC   76 (358)
Q Consensus        73 ~~~~   76 (358)
                      .+++
T Consensus       368 ~~~~  371 (776)
T 4gut_A          368 KDRI  371 (776)
T ss_dssp             SSSS
T ss_pred             ccce
Confidence            6543

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.82  E-value=0.00011  Score=74.25  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+|||||.+|+.+|..|+++|.+|+|+|+.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4689999999999999999999999999999753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.78  E-value=0.00011  Score=74.28  Aligned_cols=99  Identities=12%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-Cc-------cc----------------------------------C
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AH-------CM----------------------------------A   78 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~-------~l----------------------------------~   78 (358)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++. +.       +.                                  +
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~~  186 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLD  186 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcccc
Confidence            458999999999999999999999999999963 21       10                                  0


Q ss_pred             c---cCC-HHHHHHH-----------HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCC
Q 018320           79 R---LFT-PKIASYY-----------EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRP  141 (358)
Q Consensus        79 ~---~~~-~~~~~~~-----------~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p  141 (358)
                      .   ..+ +++.+.+           ...+++.+|+++.+. ...+.   ... ..+...+|  .++.+|.||+|||.+|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~---~~~-v~v~~~~g~~~~~~~d~lviAtGs~p  261 (598)
T 2x8g_A          187 RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAK-GRLIS---PHE-VQITDKNQKVSTITGNKIILATGERP  261 (598)
T ss_dssp             GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE---TTE-EEEECTTCCEEEEEEEEEEECCCEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcC---CCE-EEEEeCCCCeEEEEeCEEEEeCCCCC
Confidence            0   001 1121121           223567789988653 33343   122 34555666  4699999999999887


Q ss_pred             Chh
Q 018320          142 NTS  144 (358)
Q Consensus       142 ~~~  144 (358)
                      ...
T Consensus       262 ~~p  264 (598)
T 2x8g_A          262 KYP  264 (598)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.75  E-value=0.00018  Score=72.05  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -.|+|||+|..|+-+|..|++ |.+|+|+++.+.
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            479999999999999999999 999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.72  E-value=4e-05  Score=75.85  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.68  E-value=0.00017  Score=69.96  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           98 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        98 V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                      +++++++.|++|+.++++  ..|++.+|+++.+|.||++++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCH
Confidence            489999999999875444  4578889989999999999874

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.62  E-value=4.5e-05  Score=66.87  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      .|+|||||++|+.+|..|++.|.+|+|+|+++.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            6999999999999999999999999999998765

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.62  E-value=0.00029  Score=71.67  Aligned_cols=32  Identities=31%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++.+
T Consensus        20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~   51 (621)
T 2h88_A           20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF   51 (621)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            79999999999999999999999999999864

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.60  E-value=0.00028  Score=72.39  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-----CCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVI-----NKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-----~g~~Vtlv~~~~   74 (358)
                      -+|+|||||++|+-+|..|++     .|.+|+|+|+.+
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            369999999999999999999     999999999854

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.52  E-value=0.00056  Score=70.09  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~   38 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            379999999999999999999999999999864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.47  E-value=0.00025  Score=72.21  Aligned_cols=52  Identities=13%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             CCEEEcCCeeeEEEEcCC-CcEEEEEcC---CCc--EEecCeEEEeeCCCCChhhhhc
Q 018320           97 GVKFVKGTVLSSFDVDSN-GKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEG  148 (358)
Q Consensus        97 gV~v~~~~~v~~i~~~~~-g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~~~l~~~  148 (358)
                      ||++++++.|++|..+++ +++..|++.   +|+  ++.+|.||+|+|..|++.++..
T Consensus       274 nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~  331 (623)
T 3pl8_A          274 RFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN  331 (623)
T ss_dssp             EEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHT
T ss_pred             CEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHh
Confidence            789999999999987433 366666664   354  6889999999999999987653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.34  E-value=0.001  Score=68.03  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=30.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHH---h-CCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLV---I-NKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~---~-~g~~Vtlv~~~~   74 (358)
                      -.|+|||||.+|+-+|..|+   + .|.+|+|+++.+
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            47999999999999999999   6 899999999865

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.26  E-value=0.0012  Score=66.11  Aligned_cols=31  Identities=32%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++|||+|+.|+.+|..++++|.+|.|||+.
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~kValIE~~   74 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGARVLLFDYV   74 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5999999999999999999999999999964

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.16  E-value=0.0018  Score=64.12  Aligned_cols=102  Identities=13%  Similarity=0.096  Sum_probs=69.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC--------------CcEEEEeeCCcc-------cCc----------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINK--------------INVTMVFPEAHC-------MAR----------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g--------------~~Vtlv~~~~~~-------l~~----------------------   79 (358)
                      .|+|||+|+.|+.+|..|.+.|              ..+..+++.+.+       ++.                      
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s  120 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT  120 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred             cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence            5999999999999999998642              356777776532       110                      


Q ss_pred             -------------------c--CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC------cEEEEEcCCC-----cE
Q 018320           80 -------------------L--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG------KVVAVNLRDG-----NR  127 (358)
Q Consensus        80 -------------------~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g------~v~~v~~~~g-----~~  127 (358)
                                         .  .-.++.++++...++.+..+.++++|++++.++++      ....|+..++     ++
T Consensus       121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~  200 (501)
T 4b63_A          121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA  200 (501)
T ss_dssp             HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred             hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence                               0  01245566666666667789999999999764332      1234554432     35


Q ss_pred             EecCeEEEeeCCCCChh
Q 018320          128 LPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       128 i~~D~vi~a~G~~p~~~  144 (358)
                      +.++.||+|+|..|+..
T Consensus       201 ~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             EEEEEEEECCCCEECCC
T ss_pred             EEeCEEEECcCCCCCCC
Confidence            88999999999887754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.07  E-value=0.00054  Score=67.36  Aligned_cols=74  Identities=18%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             HHHHHHHHHh-----cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC---------HH--------H
Q 018320           28 DANRLVNVMK-----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT---------PK--------I   85 (358)
Q Consensus        28 da~~i~~~l~-----~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~---------~~--------~   85 (358)
                      |+.++.+.+.     ....++|+|||||.+|+.+|..|++.|.+|+|+|+.+++..+...         .+        .
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~   94 (498)
T 2iid_A           15 DYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEK   94 (498)
T ss_dssp             THHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETT
T ss_pred             hHHHHHHHhccCCCCCCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccch
Confidence            4455555442     123678999999999999999999999999999998776543100         01        1


Q ss_pred             HHHHHHHHHhCCCEEE
Q 018320           86 ASYYEEYYKSKGVKFV  101 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~  101 (358)
                      ...+.+.+++.|+++.
T Consensus        95 ~~~~~~~~~~~g~~~~  110 (498)
T 2iid_A           95 HRIVREYIRKFDLRLN  110 (498)
T ss_dssp             CHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHhCCCce
Confidence            3456677788888754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.99  E-value=0.0016  Score=66.63  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=29.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC------CCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~------g~~Vtlv~~~   73 (358)
                      -.|+|||+|..|+-+|..|++.      |.+|+|+++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            3799999999999999999997      9999999985

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.86  E-value=0.0044  Score=54.58  Aligned_cols=109  Identities=15%  Similarity=0.247  Sum_probs=69.4

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      ..+++++|||||.+|...+..|.+.|.+|+++.+.       +.+++    .+...+.+++++...    +         
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~l----~~l~~~~~i~~i~~~----~---------   84 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAEI----NEWEAKGQLRVKRKK----V---------   84 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHHH----HHHHHTTSCEEECSC----C---------
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHHH----HHHHHcCCcEEEECC----C---------
Confidence            36899999999999999999999999999999753       34543    333344567665321    1         


Q ss_pred             EEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEec-----cccCCCCcEEEEccccc
Q 018320          119 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG-----RLQSSNSSVYAVGDVAA  178 (358)
Q Consensus       119 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~-----~~~t~~~~VyAiGD~~~  178 (358)
                          .....-.+|+||.|||.......+....  . .+|.||-     ...-..|.++--||..-
T Consensus        85 ----~~~dL~~adLVIaAT~d~~~N~~I~~~a--k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~i  142 (223)
T 3dfz_A           85 ----GEEDLLNVFFIVVATNDQAVNKFVKQHI--K-NDQLVNMASSFSDGNIQIPAQFSRGRLSL  142 (223)
T ss_dssp             ----CGGGSSSCSEEEECCCCTHHHHHHHHHS--C-TTCEEEC-----CCSEECCEEEEETTEEE
T ss_pred             ----CHhHhCCCCEEEECCCCHHHHHHHHHHH--h-CCCEEEEeCCcccCeEEEeeEEEeCCEEE
Confidence                1111124899999998654443332211  2 4566652     12225677877777643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.85  E-value=0.0014  Score=63.94  Aligned_cols=83  Identities=20%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      +++++.|||.|.+|+.+|..|.++|++|++.+..+.-    .++     ..+.|++.||+++.+.....+          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~----~~~-----~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD----ENP-----TAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG----GCH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc----CCh-----HHHHHHhCCCEEEECCChHHh----------
Confidence            5799999999999999999999999999999886531    112     234677889998876431100          


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                        + ++   .+|.||+++|..|+.+.+.
T Consensus        69 --~-~~---~~d~vv~spgi~~~~p~~~   90 (451)
T 3lk7_A           69 --L-DE---DFCYMIKNPGIPYNNPMVK   90 (451)
T ss_dssp             --G-GS---CEEEEEECTTSCTTSHHHH
T ss_pred             --h-cC---CCCEEEECCcCCCCChhHH
Confidence              0 10   1799999999988876543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.75  E-value=0.0025  Score=59.45  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CCCcEEEEcCcHHHHH-HHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           40 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      ..+++.|||.|-+|+. +|..|.++|++|++.++.+.  +    +     ..+.|++.||+++.+.....          
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~--~----~-----~~~~L~~~gi~v~~g~~~~~----------   61 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY--P----P-----MSTQLEALGIDVYEGFDAAQ----------   61 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC--T----T-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC--c----H-----HHHHHHhCCCEEECCCCHHH----------
Confidence            4689999999999997 89999999999999987653  1    1     23457788999886532110          


Q ss_pred             EEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          119 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       119 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                         +..   ..+|.||+++|..|+.+.+.
T Consensus        62 ---l~~---~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           62 ---LDE---FKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             ---GGS---CCCSEEEECTTCCTTCHHHH
T ss_pred             ---cCC---CCCCEEEECCCcCCCCHHHH
Confidence               100   14899999999998877654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.64  E-value=0.0014  Score=63.33  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            689999999999999999999999999999876

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.58  E-value=0.0022  Score=61.48  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~   76 (358)
                      +..+|+|||||..|+.+|..|++.| .+|+|+|+.+++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            4578999999999999999999999 899999998765

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.48  E-value=0.0021  Score=62.61  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~   76 (358)
                      ++|+|||||.+|+-+|..|++.|.  +|+|+|+.+++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            589999999999999999999999  99999997655

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.46  E-value=0.0019  Score=63.37  Aligned_cols=36  Identities=22%  Similarity=0.196  Sum_probs=32.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEeeCCccc
Q 018320           42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCM   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~~~~~l   77 (358)
                      -.|+|||||+.|+-+|..|++ .|.+|+|+|+.+++.
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            369999999999999999987 599999999987764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.42  E-value=0.0032  Score=59.95  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-Ccc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~   76 (358)
                      ++.+|+|||+|+.|+-+|..|.+.|.+|+|+|+. +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4679999999999999999999999999999998 554

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=96.39  E-value=0.0032  Score=61.62  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=34.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +..+|+|||||..|+-+|..|++.|.+|+|+|+.+++..
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            357899999999999999999999999999999876533

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.38  E-value=0.0031  Score=62.39  Aligned_cols=36  Identities=31%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            468999999999999999999999999999998766

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.37  E-value=0.0035  Score=59.95  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+|||||..|+++|..|++.|.+|+|+++.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999999865

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.33  E-value=0.0031  Score=59.09  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+|||||.+|+-+|..|+++|.+|+|+++..
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            4589999999999999999999999999999853

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.33  E-value=0.0032  Score=62.28  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCM   77 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l   77 (358)
                      ..+|+|||||..|+-+|..|++.| .+|+|+|+.+++.
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riG   45 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence            368999999999999999999999 9999999987653

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=96.29  E-value=0.0036  Score=60.96  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   52 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence            35789999999999999999999999999999987664

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=96.26  E-value=0.0036  Score=60.98  Aligned_cols=39  Identities=15%  Similarity=0.182  Sum_probs=35.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            358999999999999999999999999999999877543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=96.15  E-value=0.0047  Score=60.59  Aligned_cols=37  Identities=32%  Similarity=0.425  Sum_probs=34.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            5789999999999999999999999999999987763

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=96.13  E-value=0.0048  Score=60.48  Aligned_cols=37  Identities=22%  Similarity=0.427  Sum_probs=34.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIG   75 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            3689999999999999999999999999999987664

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.13  E-value=0.0049  Score=59.58  Aligned_cols=60  Identities=17%  Similarity=0.304  Sum_probs=45.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc----------------CCHHHHHHHHHHHHhCCCEEEc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------FTPKIASYYEEYYKSKGVKFVK  102 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------~~~~~~~~~~~~l~~~gV~v~~  102 (358)
                      .+|+|||||..|+.+|..|++.|.+|+|+|+.+++..+.                +.+. ...+.+.+++.|++...
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~   81 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-QTALISLLDELGLKTFE   81 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-CHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-cHHHHHHHHHcCCcccc
Confidence            589999999999999999999999999999987653221                1111 23455667888887653

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.02  E-value=0.0037  Score=58.28  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC------CcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINK------INVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g------~~Vtlv~~~~   74 (358)
                      +|+|||||.+|+.+|..|++.|      .+|+|+|+.+
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999998      8999999874

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.98  E-value=0.0059  Score=58.19  Aligned_cols=36  Identities=17%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      .+++|||+|.+|+.+|..|++.|.+|+++|+.+++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            589999999999999999999999999999987654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.88  E-value=0.0099  Score=48.78  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .+++++|+|+|.+|..+|..|.+.|.+|+++++.+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            578999999999999999999999999999988654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=95.87  E-value=0.0067  Score=58.03  Aligned_cols=37  Identities=19%  Similarity=0.317  Sum_probs=33.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCM   77 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l   77 (358)
                      ..+++|||||..|+-+|..|++. |.+|+|+|+.+++.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999998 99999999987653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=95.85  E-value=0.0073  Score=57.90  Aligned_cols=37  Identities=24%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+.+++.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            4589999999999999999999999999999987653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=95.78  E-value=0.0065  Score=59.11  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=32.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~   76 (358)
                      .+|+|||||.+|+-+|..|++.|  .+|+|+|+.+++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            58999999999999999999999  999999997654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.76  E-value=0.0094  Score=60.98  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=35.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      .+++|+|||+|+.|+.+|..|.+.|.+|+++|+.+++..
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            357999999999999999999999999999999877644

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=95.76  E-value=0.0077  Score=56.95  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=32.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      +++|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            68999999999999999999999999999987553

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=95.65  E-value=0.011  Score=62.27  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=35.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      ..++|+|||+|+.|+.+|..|.+.|.+|+|+|+.+++..
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            357999999999999999999999999999999877644

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.61  E-value=0.024  Score=55.64  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      .++.+.+.+.+++.|+++++++.|++|..++++++..|++.+|+++.||.||++.+..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            4678888889999999999999999998756778888999999999999999999987

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.54  E-value=0.034  Score=51.43  Aligned_cols=84  Identities=25%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEc-CCeeeEEEEcCCCcEEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK-GTVLSSFDVDSNGKVVAV  120 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~-~~~v~~i~~~~~g~v~~v  120 (358)
                      .++.|||+|.+|.-+|..|++.|.+|+++.|.+.               +.+++.|+.+.. ...-..+.   .-   .+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~---------------~~i~~~Gl~~~~~~~g~~~~~---~~---~~   61 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY---------------ETVKAKGIRIRSATLGDYTFR---PA---AV   61 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH---------------HHHHHHCEEEEETTTCCEEEC---CS---CE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH---------------HHHHhCCcEEeecCCCcEEEe---ee---ee
Confidence            4899999999999999999999999999987530               234556766543 10000110   00   01


Q ss_pred             EcCCCcE-E-ecCeEEEeeCCCCChhhhh
Q 018320          121 NLRDGNR-L-PTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       121 ~~~~g~~-i-~~D~vi~a~G~~p~~~l~~  147 (358)
                      . .+-.. . ++|.||+|+-.....+.++
T Consensus        62 ~-~~~~~~~~~~DlVilavK~~~~~~~l~   89 (320)
T 3i83_A           62 V-RSAAELETKPDCTLLCIKVVEGADRVG   89 (320)
T ss_dssp             E-SCGGGCSSCCSEEEECCCCCTTCCHHH
T ss_pred             E-CCHHHcCCCCCEEEEecCCCChHHHHH
Confidence            1 22222 2 6899999998766555444

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.51  E-value=0.0065  Score=59.00  Aligned_cols=78  Identities=19%  Similarity=0.300  Sum_probs=56.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      ++++++|||.|.+|+.+|..|.++|.+|+..+..+....   .        ..|+ .|+++..+....+          .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~~~----------~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLNDE----------W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCCHH----------H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCcHH----------H
Confidence            578999999999999999999999999999987654211   1        3345 6888876542100          0


Q ss_pred             EEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320          120 VNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                        +    . .+|.||+++|..|+...+
T Consensus        62 --~----~-~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A           62 --L----M-AADLIVASPGIALAHPSL   81 (439)
T ss_dssp             --H----H-TCSEEEECTTSCTTCHHH
T ss_pred             --h----c-cCCEEEeCCCCCCCCHHH
Confidence              1    1 378999999988765543

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=95.51  E-value=0.014  Score=57.43  Aligned_cols=37  Identities=22%  Similarity=0.137  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~   76 (358)
                      ...+++|||||+.|+-+|..|++.| .+|+|+|+.+++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            3568999999999999999999998 799999998765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.48  E-value=0.018  Score=46.95  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=30.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            578999999999999999999999999999875

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.35  E-value=0.015  Score=57.34  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             CCCcEEEEcCcHHHHH-HHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           40 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      +.+++.|||-|-+|+. +|..|.++|++|+..+..+.       +     ..+.|++.||+++.+.....          
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~----------   78 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYFHHRPEN----------   78 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCGGG----------
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEECCCCHHH----------
Confidence            4689999999999997 89999999999999876432       2     13457888999987632110          


Q ss_pred             EEEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320          119 AVNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       119 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                         +     ..+|.||+++|..|+.+.+
T Consensus        79 ---~-----~~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           79 ---V-----LDASVVVVSTAISADNPEI   98 (494)
T ss_dssp             ---G-----TTCSEEEECTTSCTTCHHH
T ss_pred             ---c-----CCCCEEEECCCCCCCCHHH
Confidence               1     1379999999998876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.26  E-value=0.017  Score=46.36  Aligned_cols=33  Identities=21%  Similarity=0.137  Sum_probs=30.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            478999999999999999999999999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.16  E-value=0.019  Score=45.58  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            468999999999999999999999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.13  E-value=0.019  Score=46.21  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  120 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v  120 (358)
                      .++++|+|.|.+|..+|..|.+.|.+|+++++.+         +..    +.+++.|+.++.+..-       +..   +
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~---------~~~----~~~~~~g~~~i~gd~~-------~~~---~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR---------TRV----DELRERGVRAVLGNAA-------NEE---I   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH---------HHH----HHHHHTTCEEEESCTT-------SHH---H
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH---------HHH----HHHHHcCCCEEECCCC-------CHH---H
Confidence            4689999999999999999999999999998743         222    2344567776543110       000   0


Q ss_pred             EcCCCcEEecCeEEEeeCCCC
Q 018320          121 NLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus       121 ~~~~g~~i~~D~vi~a~G~~p  141 (358)
                       +..-..-.+|.+|++++...
T Consensus        64 -l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           64 -MQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             -HHHTTGGGCSEEEECCSCHH
T ss_pred             -HHhcCcccCCEEEEECCChH
Confidence             00001235899999998643

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=95.01  E-value=0.024  Score=54.80  Aligned_cols=37  Identities=14%  Similarity=0.097  Sum_probs=33.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            4589999999999999999999999999999987654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.98  E-value=0.024  Score=45.08  Aligned_cols=34  Identities=24%  Similarity=0.091  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +.++++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.95  E-value=0.018  Score=44.17  Aligned_cols=33  Identities=33%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~   73 (358)
                      .++++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            578999999999999999999999 899998874

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.94  E-value=0.025  Score=55.03  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA   78 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~   78 (358)
                      ..+|+|||+|..|+-+|..|.+.|. +|+++|+.+++..
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg   42 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   42 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCC
Confidence            4689999999999999999999998 8999999876543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=94.75  E-value=0.026  Score=55.31  Aligned_cols=37  Identities=8%  Similarity=0.031  Sum_probs=33.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus        21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            4799999999999999999999999999999877644

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.73  E-value=0.025  Score=51.24  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++|+|||||.+|...+..|.+.|++||++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            6899999999999999999999999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.69  E-value=0.043  Score=50.53  Aligned_cols=84  Identities=21%  Similarity=0.243  Sum_probs=52.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  121 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~  121 (358)
                      .++.|||+|.+|.-+|..|++.|.+|+++.|.+  .             +.+++.|+.+.....-..+.   .   ..+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~g~~~~~~~g~~~~~---~---~~~~   61 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--Y-------------EAIAGNGLKVFSINGDFTLP---H---VKGY   61 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--H-------------HHHHHTCEEEEETTCCEEES---C---CCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--H-------------HHHHhCCCEEEcCCCeEEEe---e---ceee
Confidence            479999999999999999999999999998742  0             23456787665311100110   0   0011


Q ss_pred             cCCCc-EEecCeEEEeeCCCCChhhhh
Q 018320          122 LRDGN-RLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       122 ~~~g~-~i~~D~vi~a~G~~p~~~l~~  147 (358)
                       .+-. .-++|.||+++-.....+.++
T Consensus        62 -~~~~~~~~~D~vilavk~~~~~~~l~   87 (312)
T 3hn2_A           62 -RAPEEIGPMDLVLVGLKTFANSRYEE   87 (312)
T ss_dssp             -SCHHHHCCCSEEEECCCGGGGGGHHH
T ss_pred             -cCHHHcCCCCEEEEecCCCCcHHHHH
Confidence             1111 125899999987665444443

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.42  E-value=0.05  Score=50.61  Aligned_cols=76  Identities=16%  Similarity=0.278  Sum_probs=49.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  121 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~  121 (358)
                      .++.|||+|.+|.-+|..|++.|.+|+++.|.++              .+.+++.|+.+.....  ....  .  + ...
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~--------------~~~~~~~g~~~~~~~~--~~~~--~--~-~~~   62 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARGAT--------------LQALQTAGLRLTEDGA--THTL--P--V-RAT   62 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHH--------------HHHHHHTCEEEEETTE--EEEE--C--C-EEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHH--------------HHHHHHCCCEEecCCC--eEEE--e--e-eEE
Confidence            5899999999999999999999999999976311              1345667877653211  1110  0  0 111


Q ss_pred             cCCCc-EEecCeEEEeeCC
Q 018320          122 LRDGN-RLPTDMVVVGIGI  139 (358)
Q Consensus       122 ~~~g~-~i~~D~vi~a~G~  139 (358)
                       .+-. .-.+|.||+++..
T Consensus        63 -~~~~~~~~~D~Vilavk~   80 (335)
T 3ghy_A           63 -HDAAALGEQDVVIVAVKA   80 (335)
T ss_dssp             -SCHHHHCCCSEEEECCCH
T ss_pred             -CCHHHcCCCCEEEEeCCc
Confidence             1211 1358999999865

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.18  E-value=0.035  Score=51.45  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      ..++|.|||+|.+|..+|..++..|.+|++++..+..
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~   41 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQ   41 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            3578999999999999999999999999999876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.18  E-value=0.036  Score=46.57  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=30.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~   73 (358)
                      +++++|+|.|.+|..+|..|.+. |.+|+++++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            56899999999999999999999 9999999864

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=94.16  E-value=0.08  Score=52.52  Aligned_cols=80  Identities=21%  Similarity=0.204  Sum_probs=58.4

Q ss_pred             CCCcEEEEcCcHHHHH-HHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           40 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      +.+++.+||-|-+|+. +|..|.++|.+|+..+..+.  +    +     ..+.|++.||+++.+.....          
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~--~----~-----~~~~L~~~gi~~~~G~~~~~----------   76 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY--P----P-----MSTQLEQAGVTIEEGYLIAH----------   76 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--T----T-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC--c----H-----HHHHHHHCCCEEECCCCHHH----------
Confidence            5789999999999997 68889999999999987542  1    1     23567788999886632110          


Q ss_pred             EEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320          119 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE  147 (358)
Q Consensus       119 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  147 (358)
                         +    .-.+|.||++.|..|..+.+.
T Consensus        77 ---~----~~~~d~vV~Spgi~~~~p~l~   98 (524)
T 3hn7_A           77 ---L----QPAPDLVVVGNAMKRGMDVIE   98 (524)
T ss_dssp             ---G----CSCCSEEEECTTCCTTSHHHH
T ss_pred             ---c----CCCCCEEEECCCcCCCCHHHH
Confidence               0    014799999999988776543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.13  E-value=0.053  Score=50.07  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ...++.|||+|.+|.-+|..|++.|.+|+++ +.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            3579999999999999999999999999998 53

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=93.97  E-value=0.021  Score=58.75  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC--------CcEEEEeeCC-cc
Q 018320           42 GNAVVIGGGYIGMECAASLVINK--------INVTMVFPEA-HC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g--------~~Vtlv~~~~-~~   76 (358)
                      ++|+|||+|..|+.+|..|.+.|        .+|+|+|+.+ ++
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            68999999999999999999998        8999999988 76

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=93.83  E-value=0.12  Score=50.35  Aligned_cols=55  Identities=24%  Similarity=0.312  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           83 PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        83 ~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                      ..+.+.+.+.+.+.| +++++++.|++|+.++++  ..|++.+|+++.+|.||+|+|.
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA--ARVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS--EEEEETTCCEEEEEEEEECCCG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEECCCH
Confidence            356677778888888 999999999999874443  3577788888999999999984

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.54  E-value=0.3  Score=47.11  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+.+..|||.|+.|+-+|..|++.|.+|+.+++.+
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999999999999999999999998754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.38  E-value=0.057  Score=48.97  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -++|.|||+|.+|..+|..|++.|.+|+++++.+.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            36899999999999999999999999999987654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.28  E-value=0.23  Score=45.80  Aligned_cols=35  Identities=14%  Similarity=-0.039  Sum_probs=31.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~   75 (358)
                      ..+|.|||.|.+|..+|..|.+.| .+|+++.+.+.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            368999999999999999999999 99999988653

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=93.17  E-value=0.075  Score=52.83  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -.++|||+|..|+-+|..|++.|.+|.++|+++
T Consensus         8 ~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             eeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999874

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=93.03  E-value=0.076  Score=53.63  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=38.4

Q ss_pred             ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc--cHHHHHHHHHHHHHHHcC
Q 018320          153 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE--HVDSARKSAKHAVAAIME  209 (358)
Q Consensus       153 ~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~--~~~~A~~~g~~aa~~i~g  209 (358)
                      .-|+|.||.++||++|++||+|+|+...  ++|..+ +.  ....+.-.|++|+.+++.
T Consensus       358 t~GGi~vd~~~~~~IpGLyAaGe~a~~g--~hGanr-l~gnsl~~~~vfGr~Ag~~aa~  413 (602)
T 1kf6_A          358 TMGGIETDQNCETRIKGLFAVGECSSVG--LHGANR-LGSNSLAELVVFGRLAGEQATE  413 (602)
T ss_dssp             ECCEEECCTTSBCSSBTEEECGGGEECS--SSTTSC-CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCeEEECCCCccccCCEEEcccccccc--ccCCCC-CccHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999997421  122221 22  244667778888887754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.93  E-value=0.11  Score=45.25  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .+++++|.|+ |.+|..++..|.+.|.+|+++.|.+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            5789999997 99999999999999999999988643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.90  E-value=0.049  Score=43.89  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++++|||+|.+|..++..|.+.|.+|+++.|.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4789999999999999999999999998888764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.81  E-value=0.16  Score=46.73  Aligned_cols=34  Identities=15%  Similarity=0.014  Sum_probs=30.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      ..+|.|||.|.+|.-+|..|.+.|. +|+++.+.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            3689999999999999999999999 999988753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.77  E-value=0.08  Score=45.82  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            6999999999999999999999999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.76  E-value=0.17  Score=45.57  Aligned_cols=47  Identities=21%  Similarity=0.220  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           28 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        28 da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      |..-+...++...+++++|+|+|-+|--++..|.+.|.+|+++.|.+
T Consensus       105 D~~Gf~~~L~~~~~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          105 DALGFYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             HHHHHHHHCC---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             hHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            66666666654347899999999999999999999999999998864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.54  E-value=0.15  Score=45.67  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++|+|.|+|++|..++..|.+.|.+|+.+.|.+.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47899999999999999999999999999988754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.09  E-value=0.16  Score=48.59  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++.+|+|+|+|.+|+.+|..+...|.+|+++++.+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            57899999999999999999999999999988764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.07  E-value=0.12  Score=49.04  Aligned_cols=35  Identities=20%  Similarity=0.150  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|..+|..+...|.+|+++++.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999999999999999999999998764

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=92.00  E-value=0.11  Score=51.12  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~~~~   75 (358)
                      -.++|||||..|+-+|..|++ .+.+|.|+|+++.
T Consensus        18 yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             eeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            479999999999999999998 5789999998853

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=91.90  E-value=0.13  Score=49.42  Aligned_cols=58  Identities=16%  Similarity=0.269  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      ..+.+.+.+.+++.|+++++++.|++|.. +++++..+. .+|+++.+|.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            46777888888889999999999999986 455555555 47889999999999997763

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=91.80  E-value=0.24  Score=47.85  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcC-CCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      ..+.+.+.+.+++.|+++++++.|++|..+. ++++..|.+ +|+++.+|.||+++|..|.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            4677888888999999999999999998742 566666665 5888999999999997643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.76  E-value=0.15  Score=49.54  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++++|||+|.+|...+..|.+.|.+|+++.+.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            5799999999999999999999999999999863

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=91.68  E-value=0.18  Score=45.54  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=30.3

Q ss_pred             cEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           43 NAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ||+|.|| |++|-.++..|.+.|.+|+.+.|.+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6899997 99999999999999999999998754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=91.59  E-value=0.17  Score=49.69  Aligned_cols=34  Identities=29%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -.++|||+|..|+-+|..|++.|.+|.++|+++.
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4799999999999999999999999999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.56  E-value=0.18  Score=48.28  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|+.++..+...|.+|+++++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999999999999999999999999988754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.55  E-value=0.16  Score=45.43  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+|.|+|++|..++..|.+.|.+|+.+.|.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            689999999999999999999999999998864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.54  E-value=0.19  Score=46.98  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      |+|+|+|||..|.+++..+++.|++|.+++..+
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            689999999999999999999999999998754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.46  E-value=0.21  Score=43.07  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ...++.|||.|.+|..+|..|.+.|.+|+++.|.+.
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            457899999999999999999999999999987653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=91.41  E-value=0.31  Score=43.95  Aligned_cols=48  Identities=6%  Similarity=0.136  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHhcCCCCcEEEEcCc-HHHHHHHHHHHhCCCcEEEEeeC
Q 018320           25 DLADANRLVNVMKSCSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        25 ~~~da~~i~~~l~~~~~~~vvVIGgG-~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |.....++.+... ..+++++|||.| ..|.-+|..|.+.|+.||++++.
T Consensus       135 Tp~gv~~lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          135 TPRAVIDIMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             HHHHHHHHHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cHHHHHHHHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4445555555554 689999999976 58999999999999999999753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=91.39  E-value=0.11  Score=51.75  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus        27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             ccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            369999999999999999999 999999999853

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.39  E-value=0.21  Score=41.94  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             CcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++++|.|+ |.+|..++..|.+.|.+|+++.|.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            68999997 99999999999999999999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.37  E-value=0.21  Score=47.42  Aligned_cols=35  Identities=20%  Similarity=0.143  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|+.++..+...|.+|+++++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58899999999999999999999999999988754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.34  E-value=0.53  Score=41.62  Aligned_cols=55  Identities=27%  Similarity=0.187  Sum_probs=38.9

Q ss_pred             HhcCCCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE
Q 018320           36 MKSCSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        36 l~~~~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~   99 (358)
                      +...++|.++|.| +|.+|.++|..|++.|.+|.++.|..         +-.+.+.+.+.+.+.+
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~~   79 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV---------EKLRAVEREIVAAGGE   79 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCE
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHHhCCc
Confidence            3334678888888 48899999999999999999987642         2234445555555543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.31  E-value=0.19  Score=45.78  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36899999999999999999999999999987643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.30  E-value=0.18  Score=47.60  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++++|+|+|.+|..+|..+...|.+|+++.+.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~  198 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVN  198 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            5789999999999999999999999999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.16  E-value=0.17  Score=45.03  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      .++|+|||+|-+|.++|..|++.|. +++++++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5799999999999999999999997 899998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.09  E-value=0.35  Score=43.38  Aligned_cols=46  Identities=20%  Similarity=0.181  Sum_probs=36.8

Q ss_pred             HHHHHHHHHh----cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           28 DANRLVNVMK----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        28 da~~i~~~l~----~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |...+...++    ..++++++|+|+|-+|..+|..|.+.|.+|+++.|.
T Consensus       102 D~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          102 DGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             HHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CHHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            4555555443    235789999999999999999999999999998764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.07  E-value=0.22  Score=45.78  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=30.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++|+|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            5789999997 9999999999999999999998865

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=90.96  E-value=0.18  Score=51.43  Aligned_cols=55  Identities=11%  Similarity=0.067  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCc--EEecCeEEEeeCC
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  139 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~  139 (358)
                      .+...+.+.+.+.||+++.++.++++.. +++++..+..   .+|+  .+.++.||+|+|.
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            5666677777788999999999999976 4566555543   4665  4889999999884

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=90.93  E-value=0.35  Score=46.60  Aligned_cols=54  Identities=22%  Similarity=0.404  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                      .+.+.+.+.+++.|+++++++.|++|+.++++. ..|.+ ++.++.+|.||++++.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~-~~v~~-~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGR-WKVSL-RDSSLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGC-EEEEC-SSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCce-EEEEE-CCeEEEcCEEEECCCH
Confidence            567788888999999999999999998744332 34555 5568999999999874

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=90.87  E-value=0.18  Score=50.09  Aligned_cols=56  Identities=13%  Similarity=0.103  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCC------cEEEEEcC---CCc--EEecCeEEEeeCC
Q 018320           84 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG------KVVAVNLR---DGN--RLPTDMVVVGIGI  139 (358)
Q Consensus        84 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g------~v~~v~~~---~g~--~i~~D~vi~a~G~  139 (358)
                      .+...+.+.+++ .||+++.++.++++..++++      ++..+...   +|+  ++.++.||+|+|.
T Consensus       139 ~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  206 (540)
T 1chu_A          139 EVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGG  206 (540)
T ss_dssp             ---CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            344445566777 79999999999999863334      66555543   564  6899999999984

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=90.87  E-value=0.23  Score=44.45  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++.|||+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            689999999999999999999999999988754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=90.81  E-value=0.22  Score=49.01  Aligned_cols=34  Identities=32%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -.++|||+|..|+-+|..|++.|.+|.++|+++.
T Consensus        12 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4799999999999999999999999999998864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=90.78  E-value=0.47  Score=43.62  Aligned_cols=36  Identities=19%  Similarity=0.124  Sum_probs=32.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .+++|+|.|| |++|..++..|.+.|.+|+.+.|.+.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4789999995 99999999999999999999988653

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=90.75  E-value=0.71  Score=46.84  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC-CcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320           82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPN  142 (358)
Q Consensus        82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p~  142 (358)
                      ...+.+.+.+.++..|.++++++.|.+|..+++ |++..+.+.+|+++.+|.||......|.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            356788888899999999999999999976443 7787888788999999999997776554

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=90.73  E-value=0.84  Score=41.98  Aligned_cols=56  Identities=20%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEc
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  102 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~  102 (358)
                      .++|+|.|+ |++|..++..|.+.|.+|+++.|.+..     +++-... .+.+...+++++.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~-----~~~~~~~-~~~l~~~~v~~~~   66 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPR-----SPSKAKI-FKALEDKGAIIVY   66 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCC-----CHHHHHH-HHHHHHTTCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCC-----ChhHHHH-HHHHHhCCcEEEE
Confidence            468999998 999999999999999999999987531     2332232 2345567777764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=90.64  E-value=0.19  Score=43.14  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=31.0

Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      ..++++.++||++||++...           .+..|+..|+.||+.|+...
T Consensus       288 ~~~~~~~~~v~l~GDa~~g~-----------gv~~A~~sG~~aA~~I~~~L  327 (336)
T 3kkj_A          288 GALSDADLGIYVCGDWCLSG-----------RVEGAWLSGQEAARRLLEHL  327 (336)
T ss_dssp             SSEEETTTTEEECCGGGTTS-----------SHHHHHHHHHHHHHHHHHHT
T ss_pred             cceeeCCCCEEEEecccCCc-----------CHHHHHHHHHHHHHHHHHHh
Confidence            34556789999999987542           36789999999999987543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=90.46  E-value=0.55  Score=42.37  Aligned_cols=34  Identities=32%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++++|+| +|.+|..+|..|.+.|.+|+++.|.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            578999999 8999999999999999999998775

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.44  E-value=0.29  Score=46.33  Aligned_cols=34  Identities=26%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++|+|+|+|.+|..+|..+...|.+|+++.+.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5789999999999999999999999999988764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.41  E-value=0.29  Score=41.60  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=29.3

Q ss_pred             cEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|+|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6899995 9999999999999999999998864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.39  E-value=0.31  Score=44.40  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..++++.|||.|.+|..+|..|...|.+|+++.|.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999999999999999999998874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.38  E-value=0.22  Score=48.65  Aligned_cols=35  Identities=34%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+|+++|+|+|.+|..+|..|+..|.+|+++++.
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36899999999999999999999999999988653

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.37  E-value=0.38  Score=43.23  Aligned_cols=46  Identities=15%  Similarity=0.216  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhc----CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           28 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        28 da~~i~~~l~~----~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |...+...++.    .++++++|+|+|-+|..+|..|.+.|.+|+++.|.
T Consensus       102 D~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          102 DGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            45555555542    25789999999999999999999999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.37  E-value=0.32  Score=44.17  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..++++.|||.|.+|..+|..|...|.+|+++.+.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            36899999999999999999999999999998775

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.35  E-value=1.2  Score=39.75  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=42.6

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCc----cCCHHHHHHHHHHHHhCCCE
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----~~~~~~~~~~~~~l~~~gV~   99 (358)
                      .++|.++|.|+ |.+|.++|..|++.|.+|.++.+.......    .-+++-.+.+.+.+++.|.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRK   78 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCe
Confidence            36788999984 789999999999999999999875322110    01455555566666665543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=90.30  E-value=0.15  Score=52.15  Aligned_cols=55  Identities=15%  Similarity=0.205  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhC--CCEEEcCCeeeEEEEcCC--CcEEEEEc---CCCc--EEecCeEEEeeC
Q 018320           84 KIASYYEEYYKSK--GVKFVKGTVLSSFDVDSN--GKVVAVNL---RDGN--RLPTDMVVVGIG  138 (358)
Q Consensus        84 ~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~--g~v~~v~~---~~g~--~i~~D~vi~a~G  138 (358)
                      .+...+.+.+++.  ||+++.++.++++..+++  |++..+..   .+|+  .+.++.||+|||
T Consensus       167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATG  230 (662)
T 3gyx_A          167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACG  230 (662)
T ss_dssp             SHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCC
Confidence            4555666677776  999999999988876443  36666543   3453  578999999998

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=90.28  E-value=0.31  Score=44.08  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..++|+|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            3689999998 99999999999999999999988754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.26  E-value=0.36  Score=46.99  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             CCeEEecCHHHHHHHHHHHhc--CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHh
Q 018320           18 ENVCYLRDLADANRLVNVMKS--CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS   95 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~--~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~   95 (358)
                      +.+|.+-+.++..++.+.+..  .+.++++|+|||.+|..+|..|.+ ..+|+++++.         ++-.+.+.+.|. 
T Consensus       210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~d---------~~r~~~la~~l~-  278 (461)
T 4g65_A          210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIERN---------LQRAEKLSEELE-  278 (461)
T ss_dssp             CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEESC---------HHHHHHHHHHCT-
T ss_pred             CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEecC---------HHHHHHHHHHCC-
Confidence            457777777777777766642  256899999999999999999965 5899999863         444455555442 


Q ss_pred             CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           96 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        96 ~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                       +..++.          +|+.-..+ +.+-..-++|.++.+|+..
T Consensus       279 -~~~Vi~----------GD~td~~~-L~ee~i~~~D~~ia~T~~D  311 (461)
T 4g65_A          279 -NTIVFC----------GDAADQEL-LTEENIDQVDVFIALTNED  311 (461)
T ss_dssp             -TSEEEE----------SCTTCHHH-HHHTTGGGCSEEEECCSCH
T ss_pred             -CceEEe----------ccccchhh-HhhcCchhhcEEEEcccCc
Confidence             233332          22210000 1111235689999999853

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=90.21  E-value=1.2  Score=39.74  Aligned_cols=59  Identities=20%  Similarity=0.097  Sum_probs=41.2

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-------CCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARL-------FTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~~~~~~l~~~gV   98 (358)
                      .+|.++|.|+ +.+|.++|..|++.|.+|.++.+.+......       -+++-.+.+.+.++..+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR   76 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC
Confidence            5788999985 6899999999999999999998764321110       134444555556666543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.20  E-value=0.62  Score=45.13  Aligned_cols=61  Identities=20%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------ccCCHHHHHHHHHHHHhCCCEEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------RLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      .-++.|||.|+.|+-+|..|++.|.+|+++.+.+....       ....+.+.+.+.+.+...++.+-
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t   75 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT   75 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE
Confidence            45899999999999999999999999999998754311       11344454555444444445443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=90.19  E-value=0.31  Score=47.15  Aligned_cols=59  Identities=17%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-------cCccCCHHHHHHHHHHHHhCCCEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-------l~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      .++.|||.|++|+-+|..|++.|.+|+-++..+.-       -.+..+|.+.+.+.+.+.+..+.+
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~   87 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF   87 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE
Confidence            58999999999999999999999999999765321       111245566666666665554443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.15  E-value=0.47  Score=43.01  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=36.4

Q ss_pred             HHHHHHHHHh----cCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           28 DANRLVNVMK----SCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        28 da~~i~~~l~----~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      |..-+...++    ..++++++|+|+|-+|..++..|.+.|. +|+++.|.
T Consensus       110 D~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          110 DVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             HHHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CHHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            4545544443    3468899999999999999999999998 69998764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=90.14  E-value=0.32  Score=45.98  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++++|+|+|.+|..++..+.++|.+|.++.+.+
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            57899999999999999999999999999998654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=90.13  E-value=0.37  Score=44.04  Aligned_cols=48  Identities=23%  Similarity=0.288  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHh-cCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEee
Q 018320           25 DLADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        25 ~~~da~~i~~~l~-~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      |.....++.+... ...+++++|||+|. +|.-+|..|.+.|+.||++++
T Consensus       148 Tp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs  197 (301)
T 1a4i_A          148 TPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS  197 (301)
T ss_dssp             HHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             hHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEEC
Confidence            3444444433322 34789999999995 799999999999999999974

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=90.12  E-value=0.31  Score=44.50  Aligned_cols=35  Identities=23%  Similarity=0.127  Sum_probs=31.7

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      +++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            578999997 99999999999999999999988654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.11  E-value=0.84  Score=40.43  Aligned_cols=55  Identities=18%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEE
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      .+|.++|.|| +.+|.++|..|++.|.+|.++.+..+      +.+-.+.+.+.+++.|.++
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~   65 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAK------DSDTANKLKDELEDQGAKV   65 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGG------GHHHHHHHHHHHHTTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCcc------CHHHHHHHHHHHHhcCCcE
Confidence            5788999985 78999999999999999999876432      3444455566666665443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=90.10  E-value=0.27  Score=43.34  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..+++.|||.|.+|..+|..|.+.|.+|++..|.+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            578999999999999999999999999999987643

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=90.07  E-value=0.45  Score=43.19  Aligned_cols=49  Identities=22%  Similarity=0.238  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHHHh-cCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320           25 DLADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        25 ~~~da~~i~~~l~-~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |.....++.+... ...+++++|||.|. +|.-+|..|.+.|+.||++++.
T Consensus       142 Tp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  192 (288)
T 1b0a_A          142 TPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF  192 (288)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             cHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3444444443332 34789999999995 6999999999999999999754

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=89.99  E-value=0.59  Score=43.08  Aligned_cols=47  Identities=11%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhc----CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           28 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        28 da~~i~~~l~~----~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      |..-+...++.    ..+++++|+|+|-+|-.+|..|++.|. +|+++.|.+
T Consensus       137 D~~Gf~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          137 DGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             HHHHHHHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CHHHHHHHHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            55555555542    357899999999999999999999998 899998863

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=89.96  E-value=0.77  Score=40.79  Aligned_cols=51  Identities=24%  Similarity=0.360  Sum_probs=39.0

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV   98 (358)
                      .+|+++|.|| |.+|.++|..|++.|.+|.++.|.+        ++..+.+.+.+++.+.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~--------~~~~~~~~~~~~~~~~   79 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN--------AEVADALKNELEEKGY   79 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC--------HHHHHHHHHHHHhcCC
Confidence            5788888884 7899999999999999999988742        3444555666666554

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.96  E-value=0.33  Score=45.54  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++|+|+|+|.+|..++..+...|.+|+++.+.
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4689999999999999999999999999998875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.96  E-value=0.23  Score=45.30  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..|+|.|||.|..|..+|..|+ .|.+|+++++.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4689999999999999999999 999999998754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=89.66  E-value=1.2  Score=39.66  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=40.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCc---cCCHHHHHHHHHHHHhCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMAR---LFTPKIASYYEEYYKSKG   97 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---~~~~~~~~~~~~~l~~~g   97 (358)
                      .+|.++|.|| |.+|.++|..|++.|.+|.++.+.+.....   .-+++-.+...+.+...+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG   73 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC
Confidence            5788999985 789999999999999999999886443211   012444444445555544

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.64  E-value=1.3  Score=38.68  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|.++|.|+ |.+|.++|..|++.|.+|.++.|.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            5788999985 889999999999999999998764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=89.59  E-value=0.3  Score=41.91  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             CcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           42 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        42 ~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      ++++|.|| |++|..++..|.+.|.+|+++.|.+.-.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            68999995 9999999999999999999999876543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.54  E-value=0.35  Score=43.62  Aligned_cols=34  Identities=26%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|.|||.|.+|..+|..|.+.|.+|+++.|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999987653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=89.51  E-value=0.29  Score=47.00  Aligned_cols=35  Identities=29%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++++|+|.|.+|..+|..|...|.+|++.++.+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            68999999999999999999999999999987643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=89.49  E-value=0.34  Score=43.94  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             CCCCcEEEEcCc-HHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG-~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+++++|||.| .+|.-+|..|.+.|+.||++++.
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            478999999954 58999999999999999999764

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=89.49  E-value=0.37  Score=46.24  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|.+++..+.++|.+|.++++.+
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            67899999999999999999999999999987643

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=89.42  E-value=0.52  Score=41.43  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             CCCcEEEEcC-----------------cHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGg-----------------G~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      .+++|+|-||                 |-+|..+|..|.++|++|+++.+....
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~   55 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL   55 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4788998887                 489999999999999999999986543

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=89.41  E-value=0.41  Score=41.65  Aligned_cols=34  Identities=15%  Similarity=0.033  Sum_probs=30.3

Q ss_pred             CcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |+++|.|+ |.+|..++..|.+.|.+|+++.|.+.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            47899986 99999999999999999999988654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=89.41  E-value=0.33  Score=48.75  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~~~~~   76 (358)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++..
T Consensus        25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            479999999999999999999 79999999988643

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=89.34  E-value=0.28  Score=48.72  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~   75 (358)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++.
T Consensus        14 ~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~   48 (546)
T 2jbv_A           14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD   48 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence            4799999999999999999998 899999998754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=89.34  E-value=0.48  Score=43.76  Aligned_cols=49  Identities=18%  Similarity=0.125  Sum_probs=38.5

Q ss_pred             CHHHHHHHHHH---------Hh-cCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320           25 DLADANRLVNV---------MK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        25 ~~~da~~i~~~---------l~-~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |..-+.++.+.         .. ...+++++|||+|. +|.-+|..|...|..||++.|.
T Consensus       151 Tp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          151 TPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             HHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            44555565555         22 34789999999995 5999999999999999999765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.32  E-value=0.28  Score=44.47  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999999764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=89.32  E-value=0.29  Score=49.12  Aligned_cols=33  Identities=30%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~   75 (358)
                      .+||||||..|+-+|..|++.+ .+|.|+|.++.
T Consensus         8 DyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            8 DFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999999999999999998 69999999876

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.28  E-value=0.39  Score=41.00  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=29.2

Q ss_pred             cEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +++|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5899997 9999999999999999999998753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=89.27  E-value=0.78  Score=42.20  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhc----CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           28 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        28 da~~i~~~l~~----~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      |..-+...++.    ..+++++|+|+|-+|-.++..|.+.|. +|+++.|.+
T Consensus       131 D~~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          131 DGTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cHHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            55555555543    257899999999999999999999998 799998863

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=89.26  E-value=0.47  Score=42.89  Aligned_cols=49  Identities=24%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             CHHHHHHHHHHHh-cCCCCcEEEEcCcH-HHHHHHHHHHhC--CCcEEEEeeC
Q 018320           25 DLADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVIN--KINVTMVFPE   73 (358)
Q Consensus        25 ~~~da~~i~~~l~-~~~~~~vvVIGgG~-~gle~A~~L~~~--g~~Vtlv~~~   73 (358)
                      |..-+.++.+... +..+++++|||.|. +|.-+|..|.+.  |..||+.++.
T Consensus       141 Tp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~  193 (281)
T 2c2x_A          141 TPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG  193 (281)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT
T ss_pred             hHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            3444445544443 45789999999996 599999999999  8999998654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.18  E-value=0.44  Score=41.12  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=29.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..++.|||+|.+|..+|..|.+.|.+|+++.|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            368999999999999999999999999998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.18  E-value=0.35  Score=43.79  Aligned_cols=36  Identities=14%  Similarity=0.095  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~   75 (358)
                      .+++++|+|+|-+|-.++..|.+.|. +|+++.|.+.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            57899999999999999999999998 8999988754

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.15  E-value=0.43  Score=44.93  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++|.|+|+|..|..++..+.++|.+|.++.+.+
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~   45 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSE   45 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            57899999999999999999999999999998754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=89.14  E-value=0.42  Score=43.54  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++++|.|| |++|..++..|.+.|.+|+++.|.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999997 999999999999999999998875

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=89.12  E-value=0.48  Score=41.49  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             CCCcEEEEcC-----------------cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-----------------G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+++|-||                 |-+|..+|..|+++|++|+++.+..
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~   58 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV   58 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5789999998                 7899999999999999999997644

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=89.12  E-value=0.42  Score=48.52  Aligned_cols=54  Identities=19%  Similarity=0.023  Sum_probs=42.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK   96 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~   96 (358)
                      -.++|+|+|..+.-+|..|++.|++|.++++.+++.....+..+ ..+.+++++.
T Consensus         9 ~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l-~~l~~w~~~~   62 (650)
T 1vg0_A            9 FDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF-SGLLSWLKEY   62 (650)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH-HHHHHHHHHT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccH-HHHHHHHHHh
Confidence            37999999999999999999999999999999998765444333 3344544443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=89.12  E-value=0.33  Score=46.88  Aligned_cols=36  Identities=31%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+++|+|.|.+|..+|..|...|.+|++.++.+
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            368999999999999999999999999999987643

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=89.12  E-value=0.74  Score=41.66  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhc----CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           28 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        28 da~~i~~~l~~----~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      |..-+...++.    ..+++++|+|+|-+|-.++..|.+.|. +|+++.|.
T Consensus       109 D~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          109 DGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             HHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            45444444432    257899999999999999999999996 89998774

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.10  E-value=0.54  Score=42.53  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=35.8

Q ss_pred             HHHHHHHHHh----cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           28 DANRLVNVMK----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        28 da~~i~~~l~----~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |...+...++    ...+++++|+|+|-+|..+|..|.+.| +|+++.|.
T Consensus       111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          111 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            5454444443    235789999999999999999999999 99998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.06  E-value=0.28  Score=44.49  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~   36 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAK   36 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCE
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccC
Confidence            4799999999999999999999999999998753

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=89.06  E-value=0.44  Score=43.51  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHH-hcCCCCcEEEEcCc-HHHHHHHHHHHhCCCcEEEEeeC
Q 018320           25 DLADANRLVNVM-KSCSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        25 ~~~da~~i~~~l-~~~~~~~vvVIGgG-~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |..-+.++.+.. -...+++++|||.| .+|.-+|..|.+.|+.||++++.
T Consensus       148 Tp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          148 TAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             HHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            334444444433 23478999999965 58999999999999999999874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=88.99  E-value=0.43  Score=43.68  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++++++|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5678999997 9999999999999999999998854

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.99  E-value=0.4  Score=46.66  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -+++|+|+|-.|..+|..|...|.+|+++++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d   35 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKD   35 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            47999999999999999999999999999864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.99  E-value=1.7  Score=38.64  Aligned_cols=59  Identities=14%  Similarity=-0.002  Sum_probs=40.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCcc---CCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~---~~~~~~~~~~~~l~~~gV   98 (358)
                      ++|.++|.|| |.+|.++|..|++.|.+|.++.+........   -..+-.+.....+++.+.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR   71 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC
Confidence            5788999985 6899999999999999999998764322110   123334444455555543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=88.92  E-value=0.51  Score=43.49  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      .++++.|||-|.+|-.+|..|...|.+|+.+.+.+..
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~  174 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKS  174 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchh
Confidence            5789999999999999999999999999999887653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.89  E-value=0.33  Score=47.61  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+++|+|+|.|.+|..+|..++..|.+|+++++.
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~  306 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEID  306 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999999999999999999999988764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.83  E-value=0.36  Score=46.27  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  103 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~  103 (358)
                      ..+|+|+|.|..|..+|..|.+.|.+|+++++.+         +..    +.+++.|+.++.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~---------~~v----~~~~~~g~~vi~G   53 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP---------DHI----ETLRKFGMKVFYG   53 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH---------HHH----HHHHHTTCCCEES
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------HHH----HHHHhCCCeEEEc
Confidence            4689999999999999999999999999998643         322    2344567776654

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=88.76  E-value=0.4  Score=43.39  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=28.9

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +++++|.|| |++|..++..|.+.|.+|+++.|.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            478999997 9999999999999999999998653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=88.72  E-value=0.51  Score=43.78  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++.|||.|.+|..+|..|+..|.+|+++.+.+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            57899999999999999999999999999988754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.65  E-value=0.49  Score=41.87  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             CCCcEEEEcC-cH--HHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GY--IGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~--~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+++|.|+ |.  +|.++|..|++.|.+|.++.|.+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            5788999996 56  99999999999999999987753

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=88.64  E-value=0.52  Score=40.89  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++++|.|+ |.+|.++|..|.+.|.+|+++.|.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5788999986 899999999999999999998774

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.64  E-value=0.44  Score=43.43  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ..+++++|+|+|.+|..+|..|.+.|. +|+++.|.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            357899999999999999999999998 89998775

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=88.61  E-value=0.68  Score=41.95  Aligned_cols=46  Identities=17%  Similarity=0.137  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhc----CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           28 DANRLVNVMKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        28 da~~i~~~l~~----~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      |..-+...++.    ..+++++|+|+|-+|--++..|.+.|. +|+++.|.
T Consensus       105 D~~G~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          105 DYIGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             HHHHHHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             cHHHHHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            55555555543    257899999999999999999999998 89999875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.59  E-value=0.34  Score=44.87  Aligned_cols=32  Identities=25%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++.|||+|.+|..+|..|++.|.+|+++.|.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            58999999999999999999999999998764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.58  E-value=1.4  Score=39.55  Aligned_cols=51  Identities=22%  Similarity=0.423  Sum_probs=37.7

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV   98 (358)
                      ++|.++|.|| |.+|.++|..|++.|.+|.++.+...        ...+.+.+.+++.|.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~--------~~~~~~~~~~~~~~~   97 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE--------GDANETKQYVEKEGV   97 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH--------HHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--------HHHHHHHHHHHhcCC
Confidence            5788999985 78999999999999999999887532        223344455555553

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=88.58  E-value=0.53  Score=40.89  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++++|.|+ |.+|.++|..|.+.|.+|.++.|.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5788999986 899999999999999999998764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.55  E-value=0.34  Score=42.88  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             CCCcEEEEcC-cH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GY-IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~-~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|+++|.|| |. +|.++|..|.+.|.+|.++.|.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~   56 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYH   56 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCC
Confidence            5789999998 74 9999999999999999998775

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=88.54  E-value=1.9  Score=38.30  Aligned_cols=59  Identities=15%  Similarity=0.121  Sum_probs=40.9

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccC---ccCCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA---RLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~---~~~~~~~~~~~~~~l~~~gV   98 (358)
                      ++|.++|.| +|.+|.++|..|++.|.+|.++.|.+....   .....+-.+...+.+++.+.
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGR   71 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCC
Confidence            578899998 578999999999999999999988643211   01234444445555665553

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=88.50  E-value=0.5  Score=44.50  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=31.3

Q ss_pred             cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320           38 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        38 ~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      +..+++|+|+|.|.+|..+|..|.+.|.+|++.++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            45789999999999999999999999999986653

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=88.41  E-value=0.45  Score=43.15  Aligned_cols=48  Identities=21%  Similarity=0.316  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHh-cCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320           26 LADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        26 ~~da~~i~~~l~-~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ...+.++.+... ...+++++|||.|. +|.-+|..|.+.|+.||++++.
T Consensus       144 p~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~  193 (285)
T 3p2o_A          144 PLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK  193 (285)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            333444444332 34789999999655 7999999999999999999864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=88.35  E-value=0.49  Score=47.09  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=34.7

Q ss_pred             eEEecCHHHHHHHHHHHhcC-CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           20 VCYLRDLADANRLVNVMKSC-SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        20 v~~l~~~~da~~i~~~l~~~-~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      ++.+-+.++..++.+.+... +.++++|+|+|..|..+|..|.+.|.+|+++++.+....
T Consensus       326 L~v~g~~~~l~~~~~~~~~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~  385 (565)
T 4gx0_A          326 LVLAGTKSQLAALEYLIGEAPEDELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVC  385 (565)
T ss_dssp             ---------------------CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSC
T ss_pred             EEEEeCHHHHHHHHHHhcCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHh
Confidence            44444555555555544321 238999999999999999999999999999998876544

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=88.32  E-value=2.1  Score=38.06  Aligned_cols=59  Identities=14%  Similarity=0.055  Sum_probs=40.7

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccC----ccCCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMA----RLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~----~~~~~~~~~~~~~~l~~~gV   98 (358)
                      .+|.++|.|| |.+|.++|..|++.|.+|.++.+......    ..-+++-.+...+.+...+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR   73 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC
Confidence            5788999985 78999999999999999999987533211    00144444555555665553

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.29  E-value=0.21  Score=43.54  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++|+|+|.+|..+|..|.+.|. |+++++.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            4689999999999999999999999 99998754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.27  E-value=0.45  Score=43.51  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=31.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -.+|.|||.|.+|..+|..|.+.|.+|+++.+.+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999987653

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=88.24  E-value=0.49  Score=43.68  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=29.9

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCC-CcEEEEeeCCc
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINK-INVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g-~~Vtlv~~~~~   75 (358)
                      ++++|+|.|| |++|..++..|.+.| .+|+++.|.+.
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4678999997 999999999999999 99999987643

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=88.17  E-value=0.5  Score=43.20  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=30.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~   73 (358)
                      ..+|+|||+|.+|.-+|..|++.|.  +|+++.+.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999998  99999875

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.17  E-value=1.3  Score=38.59  Aligned_cols=50  Identities=28%  Similarity=0.288  Sum_probs=37.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV   98 (358)
                      .+|+++|.|| |.+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~---------~~~~~~~~~~~~~~~   54 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQ---------ASAEKFENSMKEKGF   54 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHHHHhcCC
Confidence            4688888884 7899999999999999999987643         223344555665553

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=88.14  E-value=0.37  Score=46.82  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=32.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            37899999999999999999999999999988654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=88.10  E-value=0.62  Score=40.90  Aligned_cols=36  Identities=19%  Similarity=0.181  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++|+++|.|+ |.+|.++|..|++.|.+|.++.|.+
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            36789999985 7999999999999999999988753

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=88.04  E-value=0.52  Score=42.45  Aligned_cols=34  Identities=32%  Similarity=0.364  Sum_probs=30.4

Q ss_pred             CcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|+|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   35 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            46899997 99999999999999999999987654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=87.98  E-value=0.54  Score=46.06  Aligned_cols=49  Identities=14%  Similarity=0.073  Sum_probs=37.9

Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      +...++.|+++++++.|++|+.++ +.+ .|.+.+|+++.+|.||++++..
T Consensus       219 ~~l~~~lg~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          219 ERIMDLLGDRVKLERPVIYIDQTR-ENV-LVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHHGGGEESSCCEEEEECSS-SSE-EEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHcCCcEEcCCeeEEEEECC-CeE-EEEECCCeEEEeCEEEECCCHH
Confidence            333344488999999999998643 444 4788899999999999999854

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=87.97  E-value=0.48  Score=42.42  Aligned_cols=36  Identities=11%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CCCCcEEEEcC-cH--HHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGG-GY--IGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGg-G~--~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++|.++|.|| |.  +|.++|..|++.|.+|.++.|..
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            35788888885 56  99999999999999999998864

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=87.93  E-value=1.6  Score=38.75  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=40.5

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      .++|.++|-|| +-+|.++|..|++.|.+|.++.+.         ++-.+.+.+.+++.|.+.+
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~---------~~~~~~~~~~i~~~g~~~~   59 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL---------EDRLNQIVQELRGMGKEVL   59 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC---------HHHHHHHHHHHHhcCCcEE
Confidence            36888888885 569999999999999999998763         3344556666777765443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=87.93  E-value=0.43  Score=45.89  Aligned_cols=35  Identities=31%  Similarity=0.365  Sum_probs=32.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++++|+|.|.+|..+|..|...|.+|+++++.+
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            58999999999999999999999999999987643

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=87.92  E-value=0.5  Score=42.82  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+++++|||.|. +|.-+|..|.+.|+.||+.++.
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999999655 7999999999999999999754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=87.92  E-value=0.4  Score=48.11  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=30.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVIN-KINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~   74 (358)
                      -.+||||||..|+-+|..|++. +.+|.|+|.++
T Consensus        20 yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           20 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            3799999999999999999975 78999999987

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=87.84  E-value=2.2  Score=38.41  Aligned_cols=59  Identities=15%  Similarity=0.067  Sum_probs=41.2

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCc---cCCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMAR---LFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---~~~~~~~~~~~~~l~~~gV   98 (358)
                      .+|.++|.|| +.+|.++|..|++.|.+|.++.+.+.....   .-+++-.+...+.++..|.
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR   89 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC
Confidence            5788999885 689999999999999999999886432110   0234444555555666554

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=87.83  E-value=3  Score=38.12  Aligned_cols=79  Identities=19%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCc--HHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHh
Q 018320           18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG--YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS   95 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG--~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~   95 (358)
                      .+-+..-.+.|...+++.+...++.++++||-+  .++-.++..+++.|.+|+++.+... .   .++++.+.+++..++
T Consensus       125 ~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~-~---~~~~~~~~~~~~a~~  200 (307)
T 2i6u_A          125 DEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGF-L---PDPSVRAAAERRAQD  200 (307)
T ss_dssp             SSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTS-C---CCHHHHHHHHHHHHH
T ss_pred             CCcCccHHHHHHHHHHHHhCCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccc-c---CCHHHHHHHHHHHHH
Confidence            344555567899999998877788999999985  8999999999999999999987543 2   245566666666667


Q ss_pred             CCCEE
Q 018320           96 KGVKF  100 (358)
Q Consensus        96 ~gV~v  100 (358)
                      .|.++
T Consensus       201 ~G~~~  205 (307)
T 2i6u_A          201 TGASV  205 (307)
T ss_dssp             HTCCE
T ss_pred             cCCeE
Confidence            77444

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=87.80  E-value=1  Score=40.48  Aligned_cols=46  Identities=9%  Similarity=0.094  Sum_probs=36.9

Q ss_pred             HHHHHHHH-Hhc----CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           28 DANRLVNV-MKS----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        28 da~~i~~~-l~~----~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      |..-+... ++.    ..+++++|+|+|-+|-.++..|.+.|. +|+++.|.
T Consensus       102 D~~G~~~~lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          102 DGIGLLRDIEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             HHHHHHHHHHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CHHHHHHHHHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            55556554 542    257899999999999999999999996 89998774

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.79  E-value=0.54  Score=40.05  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             cEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++.|+| +|.+|..+|..|.+.|.+|+++.|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999999999999988753

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=87.77  E-value=0.54  Score=41.95  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC---cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG---GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg---G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+++|.|+   |.+|.++|..|++.|.+|.++.|.+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999997   6999999999999999999998865

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=87.75  E-value=0.22  Score=49.69  Aligned_cols=43  Identities=23%  Similarity=0.237  Sum_probs=34.8

Q ss_pred             EEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          157 IKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       157 i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      |..|+.++| +.+++|++||++++..          .+..|..+|..+|+.|+.
T Consensus       497 i~~~~~~~~~~~~gly~~GegaG~a~----------gi~~Aa~~G~~~a~~i~~  540 (549)
T 3nlc_A          497 IKRGKDFQSVNLKGFYPAGEGAGYAG----------GILSAGIDGIKVAEAVAR  540 (549)
T ss_dssp             CCCTTTTSCTTCBTEEECHHHHTSCC----------SHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCceECCcCCEEEccccCChhh----------HHHHHHHHHHHHHHHHHH
Confidence            667889999 8999999999998754          355677788888887753

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=87.75  E-value=1.6  Score=39.46  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|.++|.|| |.+|.++|..|++.|.+|.++.|.
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~   64 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVD   64 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5788999985 789999999999999999998764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=87.74  E-value=1.4  Score=39.48  Aligned_cols=52  Identities=17%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCC
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV   98 (358)
                      ..+|.++|.|| |.+|.++|..|++.|.+|.++.+.+        ++-.+.+.+.+...|.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~   79 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGD--------AEGVAPVIAELSGLGA   79 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC--------HHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCC--------HHHHHHHHHHHHhcCC
Confidence            35778888884 7899999999999999999987532        2333444455555543

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=87.70  E-value=0.39  Score=42.91  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+++|+|.|| |++|..++..|.+.|.+|+++.|.
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   45 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ   45 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc
Confidence            4689999985 999999999999999999999875

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=87.70  E-value=0.6  Score=43.23  Aligned_cols=35  Identities=20%  Similarity=0.151  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++.|||.|.+|..+|..|...|.+|+++.+.+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            57899999999999999999999999999998754

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=87.70  E-value=0.63  Score=43.20  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++++.|||.|.+|..+|..|...|.+|+++.+.+.
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~  198 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK  198 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence            578999999999999999999999999999887653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=87.68  E-value=0.39  Score=46.75  Aligned_cols=35  Identities=26%  Similarity=0.237  Sum_probs=31.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      -++|.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            36799999999999999999999999999987653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=87.68  E-value=0.62  Score=42.76  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..++|+|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999997 9999999999999999999998754

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=87.68  E-value=2.7  Score=39.33  Aligned_cols=79  Identities=16%  Similarity=0.194  Sum_probs=59.6

Q ss_pred             EEecCHHHHHHHHHHHhcCCCCcEEEEcCc--HHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCC
Q 018320           21 CYLRDLADANRLVNVMKSCSGGNAVVIGGG--YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        21 ~~l~~~~da~~i~~~l~~~~~~~vvVIGgG--~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV   98 (358)
                      +..-.+.|+..+++.+...++.++++||-+  .++-.++..+++.|.+|+++.+... .+. .++++.+.+++..++.|.
T Consensus       160 HPtQaLaDl~Ti~E~~G~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~-~p~-~~~~~~~~~~~~~~~~g~  237 (365)
T 4amu_A          160 HPTQIIADFMTMKEKFGNLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNY-KNE-IDKNVLAKCIELFKRNGG  237 (365)
T ss_dssp             CHHHHHHHHHHHHHHHSSCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGG-GGG-SCHHHHHHHHHHHHHHSC
T ss_pred             CcHHHHHHHHHHHHHhCCCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccc-cCC-CcHHHHHHHHHHHHHcCC
Confidence            344456788889888877789999999987  6778888889999999999987543 222 367777777777777776


Q ss_pred             EEE
Q 018320           99 KFV  101 (358)
Q Consensus        99 ~v~  101 (358)
                      .+.
T Consensus       238 ~i~  240 (365)
T 4amu_A          238 SLR  240 (365)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=87.67  E-value=0.37  Score=47.15  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .-+|.|||.|++|+-+|..|++.|.+|+++.+.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999998753

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.66  E-value=1.6  Score=38.52  Aligned_cols=34  Identities=12%  Similarity=0.097  Sum_probs=29.9

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.|+ |.+|.++|..|++.|.+|.++.|.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAART   44 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            5788999985 679999999999999999998764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=87.65  E-value=1.3  Score=39.39  Aligned_cols=51  Identities=20%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV   98 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV   98 (358)
                      .+|.++|.|| |.+|.++|..|++.|.+|.++.+..        ++..+.+.+.+++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~   78 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASS--------AGAADEVVAAIAAAGG   78 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCC--------hHHHHHHHHHHHhcCC
Confidence            5788888874 7899999999999999999887642        2333445555665543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=87.62  E-value=0.57  Score=43.47  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=32.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..++++.|||.|.+|..+|..|...|.+|+++.+.+
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            467899999999999999999999999999988754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=87.60  E-value=1.9  Score=38.28  Aligned_cols=53  Identities=25%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~   99 (358)
                      ..+|.++|.|| |.+|.++|..|++.|.+|.++.+.+        .+..+.+.+.+++.|.+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~--------~~~~~~~~~~l~~~~~~   82 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA--------AERAQAVVSEIEQAGGR   82 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC--------HHHHHHHHHHHHhcCCc
Confidence            36788999985 7899999999999999999886542        23334445556655543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=87.60  E-value=0.68  Score=42.42  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++.|||.|.+|..+|..|...|.+|+.+.+.+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            57899999999999999999999999999887753

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=87.47  E-value=0.46  Score=43.25  Aligned_cols=33  Identities=18%  Similarity=0.108  Sum_probs=30.3

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+|.|||.|.+|.-+|..|.+.|.+|+++.|.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            468999999999999999999999999998764

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=87.44  E-value=0.35  Score=43.10  Aligned_cols=31  Identities=13%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             cEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +++|.|| |++|..++..|.+.|.+|+.+.|.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK   38 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence            8999995 999999999999999999999884

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=87.43  E-value=0.34  Score=43.65  Aligned_cols=34  Identities=26%  Similarity=0.226  Sum_probs=30.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|.|||.|.+|..+|..|.+.|.+|+++.|.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999987653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=87.41  E-value=0.57  Score=42.59  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.4

Q ss_pred             CcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|.||| .|.+|..+|..|.+.|.+|+++.+.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            5899999 99999999999999999999997654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=87.39  E-value=0.87  Score=41.54  Aligned_cols=36  Identities=28%  Similarity=0.467  Sum_probs=31.6

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..++++|.| +|++|..++..|.+.|.+|+++.|.+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            357899998 599999999999999999999988654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=87.38  E-value=1.8  Score=38.32  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=30.3

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|+++|.| +|.+|.++|..|.+.|.+|+++.|.
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   64 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   64 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            578899998 5799999999999999999998774

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=87.37  E-value=0.72  Score=42.41  Aligned_cols=36  Identities=17%  Similarity=0.085  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..++++.|||.|.+|..+|..|...|.+|+.+.+.+
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            367899999999999999999999999999887653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=87.35  E-value=0.64  Score=42.31  Aligned_cols=36  Identities=22%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++++|+|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   49 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   49 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            4689999985 99999999999999999999988654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.34  E-value=0.42  Score=46.36  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|.|||.|.+|.-+|..|++.|.+|+++.+.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999998754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=87.31  E-value=1.2  Score=39.02  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|.++|.| +|.+|.++|..|++.|.+|.++.|.+
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578899988 46899999999999999999998754

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=87.31  E-value=0.6  Score=40.35  Aligned_cols=36  Identities=14%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCC--cEEEEeeCCc
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKI--NVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~--~Vtlv~~~~~   75 (358)
                      .+++++|.| +|.+|..++..|.+.|.  +|+++.|.+.
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~   55 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   55 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCC
Confidence            468999999 59999999999999999  9999988764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=87.26  E-value=0.43  Score=43.34  Aligned_cols=35  Identities=20%  Similarity=0.022  Sum_probs=31.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..+|.|||.|.+|..+|..|.+.|.+|+++.+.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999988654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=87.24  E-value=0.54  Score=43.18  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=31.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~   75 (358)
                      ..+|.|||+|.+|.-+|..|++.|. +|+++++.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            4689999999999999999999998 9999987653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=87.18  E-value=0.5  Score=44.33  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+|.|||+|..|.-+|..|++.|.+|+++.|.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            468999999999999999999999999998774

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=87.15  E-value=3.2  Score=38.26  Aligned_cols=78  Identities=14%  Similarity=0.085  Sum_probs=59.6

Q ss_pred             CeEEecCHHHHHHHHHHHhcCCCCcEEEEcCc--HHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhC
Q 018320           19 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGG--YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK   96 (358)
Q Consensus        19 ~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG--~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~   96 (358)
                      +-+..-.+.|...+++.+...++.++++||-|  .++-.++..+++.|.+|+++.+... .   .++++.+.+++..++.
T Consensus       145 ~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~-~---p~~~~~~~~~~~a~~~  220 (325)
T 1vlv_A          145 EFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEEL-K---PRSDVFKRCQEIVKET  220 (325)
T ss_dssp             SCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGG-C---CCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccc-c---CCHHHHHHHHHHHHHc
Confidence            44555567889999998877788999999985  8999999999999999999987543 2   2455666666666677


Q ss_pred             CCEE
Q 018320           97 GVKF  100 (358)
Q Consensus        97 gV~v  100 (358)
                      |.++
T Consensus       221 G~~v  224 (325)
T 1vlv_A          221 DGSV  224 (325)
T ss_dssp             CCEE
T ss_pred             CCeE
Confidence            7544

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=87.14  E-value=0.63  Score=43.31  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      +.++|+|||+|-+|.++|..|++.|. ++++++..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            46899999999999999999999997 68898775

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=87.10  E-value=0.76  Score=42.21  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++++.|||.|.+|-.+|..|...|.+|+.+.+.+.
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  178 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPK  178 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            578999999999999999999999999999887653

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=87.10  E-value=1.4  Score=40.09  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=28.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|-+||-|..|.-+|..|.+.|++|++..|.+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            689999999999999999999999999988754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=87.09  E-value=0.4  Score=48.69  Aligned_cols=56  Identities=16%  Similarity=0.147  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhC-CC-EEEcCCeeeEEEEcCC--CcEEEEEc---CCCc--EEecCeEEEeeCC
Q 018320           84 KIASYYEEYYKSK-GV-KFVKGTVLSSFDVDSN--GKVVAVNL---RDGN--RLPTDMVVVGIGI  139 (358)
Q Consensus        84 ~~~~~~~~~l~~~-gV-~v~~~~~v~~i~~~~~--g~v~~v~~---~~g~--~i~~D~vi~a~G~  139 (358)
                      .+...+.+.+++. || +++.++.++++..+++  +++..+..   .+|+  .+.++.||+|+|.
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG  216 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGG  216 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCc
Confidence            3455666677776 99 9999999999986433  27666543   5665  5899999999983

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=87.07  E-value=1.6  Score=38.68  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=37.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~   99 (358)
                      .+|.++|.|| |.+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+.+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~---------~~~~~~~~~l~~~~~~   54 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQ---------ARIEAIATEIRDAGGT   54 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---------HHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCc
Confidence            4678888885 7899999999999999999987642         2234445556665543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=87.06  E-value=0.54  Score=42.95  Aligned_cols=76  Identities=24%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  121 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~  121 (358)
                      .+++|||+|.+|.-+|..|+ .|.+|+++.|.+.         -    .+.+++.|+.+..... ....        .+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~---------~----~~~l~~~G~~~~~~~~-~~~~--------~~~   59 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE---------Q----AAAIQSEGIRLYKGGE-EFRA--------DCS   59 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH---------H----HHHHHHHCEEEEETTE-EEEE--------CCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH---------H----HHHHHhCCceEecCCC-eecc--------ccc
Confidence            47999999999999999999 9999999987531         1    2334556877653221 1110        011


Q ss_pred             cCCCcEEecCeEEEeeCCC
Q 018320          122 LRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       122 ~~~g~~i~~D~vi~a~G~~  140 (358)
                      ......-++|.||+|+-..
T Consensus        60 ~~~~~~~~~D~vilavK~~   78 (307)
T 3ego_A           60 ADTSINSDFDLLVVTVKQH   78 (307)
T ss_dssp             EESSCCSCCSEEEECCCGG
T ss_pred             ccccccCCCCEEEEEeCHH
Confidence            1111123589999997643

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=87.06  E-value=0.77  Score=39.96  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|+++|.| +|.+|.++|..|.+.|.+|+++.|.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            578899998 478999999999999999999988653

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=87.04  E-value=0.71  Score=42.51  Aligned_cols=35  Identities=20%  Similarity=0.143  Sum_probs=31.9

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..++++|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999997 9999999999999999999998864

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=87.00  E-value=0.67  Score=43.19  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=30.9

Q ss_pred             CcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|+|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            68999997 99999999999999999999988654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=86.99  E-value=1.6  Score=38.12  Aligned_cols=52  Identities=29%  Similarity=0.279  Sum_probs=37.5

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~   99 (358)
                      .+|+++|.| +|.+|.++|..|++.|.+|.++.+.+        ++-.+.+.+.+++.+.+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~~   55 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGS--------KEKAEAVVEEIKAKGVD   55 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC--------HHHHHHHHHHHHhcCCc
Confidence            367788887 47899999999999999999876642        23334445556665543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=86.95  E-value=0.56  Score=40.01  Aligned_cols=35  Identities=14%  Similarity=0.216  Sum_probs=31.1

Q ss_pred             cEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320           43 NAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCM   77 (358)
Q Consensus        43 ~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l   77 (358)
                      +++|.| +|++|..++..|.+.|.+|+++.|.+.-.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            689998 79999999999999999999999876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=86.87  E-value=2.1  Score=37.30  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|.++|.| +|.+|.++|..|++.|.+|.++.|.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   40 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARR   40 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            468899988 5789999999999999999998764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=86.86  E-value=0.7  Score=41.00  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ..++|+|||.|-+|.++|..|++.|. ++++++..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            36899999999999999999999998 68888764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=86.84  E-value=1.1  Score=39.80  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=33.0

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      ++|.++|.| +|.+|.++|..|++.|.+|.++.|...-..
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   44 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANP   44 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCT
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhh
Confidence            578899998 478999999999999999999988765433

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=86.83  E-value=2  Score=37.90  Aligned_cols=36  Identities=14%  Similarity=0.059  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .+|.++|.|| |.+|.++|..|++.|.+|.++.|...
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   63 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK   63 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            5788888884 78999999999999999999988754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=86.83  E-value=0.76  Score=42.33  Aligned_cols=36  Identities=22%  Similarity=0.104  Sum_probs=32.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .+++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   44 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   44 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            4689999995 99999999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	1e-22
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	1e-21
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	6e-21
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	4e-20
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	1e-18
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	4e-18
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	7e-16
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	7e-14
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	9e-14
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	9e-12
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	1e-11
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	1e-10
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	4e-10
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	5e-10
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	8e-10
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	4e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	6e-09
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	7e-09
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-08
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	2e-08
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	2e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	7e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-07
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	6e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	1e-06
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-06
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	8e-06
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	3e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	5e-05
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	5e-05
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	6e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d1d7ya3	97	d.87.1.1 (A:309-405) NADH-dependent ferredoxin red	7e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	8e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	8e-04
d1q1ra3	103	d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu	9e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.001
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.003
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	0.003
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	0.003

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 89.5 bits (221), Expect = 1e-22
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           G D +N+  +R    A +L          N VVIG GYIG+E A +       VT++   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              +      +      E  ++  +    G  +     + +G+V  V + D N    D+V
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVER--YEGDGRVQKV-VTDKNAYDADLV 119

Query: 134 VVGI 137
           VV +
Sbjct: 120 VVAV 123

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 1e-21
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 8/126 (6%)

Query: 18  ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN----VTMVFPE 73
                 R + D   L  + +     +  +IGGG++G E A +L          V  +FPE
Sbjct: 16  SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE 73

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
              M ++    ++++  E  + +GVK +   ++ S  V      + + L+DG ++ TD +
Sbjct: 74  KGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLIKLKDGRKVETDHI 131

Query: 134 VVGIGI 139
           V  +G+
Sbjct: 132 VAAVGL 137

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 85.2 bits (210), Expect = 6e-21
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           L G+    V  LR L DA R+   ++       +++GGG IG+E AA+     ++V++V 
Sbjct: 4   LQGAT-MPVHTLRTLEDARRIQAGLRP--QSRLLIVGGGVIGLELAATARTAGVHVSLVE 60

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
            +   M+R     +A +   Y+ ++GV       ++            V L DG R+  D
Sbjct: 61  TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAAD 114

Query: 132 MVVVGIG 138
           MVVVGIG
Sbjct: 115 MVVVGIG 121

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 83.0 bits (204), Expect = 4e-20
 Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 16  DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75
            A N  YLR L DA  +   + +      VVIGGGYIG+E AA+ +   ++VT++   A 
Sbjct: 12  KANNFRYLRTLEDAECIRRQLIA--DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69

Query: 76  CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVV 134
            + R+  P ++++YE  ++  GV    GT +  F++     KV AV   DG RLP D+V+
Sbjct: 70  VLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVI 129

Query: 135 VGIG 138
            GIG
Sbjct: 130 AGIG 133

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 80.5 bits (197), Expect = 1e-18
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
           VV+G G   +   A L        +             P ++  +  +  ++ ++     
Sbjct: 7   VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66

Query: 105 ------VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKG--- 155
                 +L       + +   V L DG  LP   +V+  G  P   L    L    G   
Sbjct: 67  APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC 126

Query: 156 --GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 210
             GI V    +++   VYA+GDV      L G   R+E   +A+         +++P
Sbjct: 127 DDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDP 183

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 79.0 bits (193), Expect = 4e-18
 Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 15/180 (8%)

Query: 43  NAVVIGGGYIGMECAASLVINKINVTMV--------------FPEAHCMARLFTPKIASY 88
           N V++G G  G+E A  L  +     +                 +A+   +     +   
Sbjct: 5   NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 64

Query: 89  YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 148
             + Y ++ ++ + GT +++ + D   +V+  + R  +     +   G  + PN  L   
Sbjct: 65  TPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELASA 123

Query: 149 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208
                  GI +   +Q+S+  + AVGD A F  +L     R+E V +A + A+   A + 
Sbjct: 124 AGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC 183

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 70.9 bits (173), Expect = 7e-16
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 17  AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
            E +  LR + DA+R+   +++   G A++IGGG+IG+E A +L     +V ++   A  
Sbjct: 10  KEYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 67

Query: 77  MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 136
           +      ++++  ++  +  GVKF   + L   + +         L +   +   + +  
Sbjct: 68  LG--LDEELSNMIKDMLEETGVKFFLNSELLEANEEG-------VLTNSGFIEGKVKICA 118

Query: 137 IGI 139
           IGI
Sbjct: 119 IGI 121

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (158), Expect = 7e-14
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 22  YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 81
           Y  D      L  + +        V+G GYIG+E    +        +       +   F
Sbjct: 7   YGIDSDGFFALPALPER-----VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-F 60

Query: 82  TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
            P I+    E   ++G +     +  +   +++G +  + L DG     D ++  IG
Sbjct: 61  DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIG 116

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 67.2 bits (162), Expect = 9e-14
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 24/193 (12%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP--------------KIASYYE 90
           +V+G  + G E    L+    +  + + E        +                +     
Sbjct: 4   IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTG 63

Query: 91  EYYKSKGVKFVKGTVLSSFDVDSNGKV-VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 149
           E  +S+GV     T +++     +      +   +      D +++  G  P        
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRP 123

Query: 150 LTL---------EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 200
            T            G IK    +++S   V+AVGD              +    +ARK  
Sbjct: 124 NTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQG 183

Query: 201 KHAVAAIMEPDKT 213
           + AV  + EP K 
Sbjct: 184 RFAVKNLEEPVKP 196

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 59.4 bits (143), Expect = 9e-12
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
            ++G GYI +E    +    I+  +       + + F   + +  E   K   +  V   
Sbjct: 26  GIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFA 84

Query: 105 VLSSFDVDSNGKVVAVNLRDGNRL-PTDMVVVGI 137
            +      S+  +  ++L DG      D V+  +
Sbjct: 85  DVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 117

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  +V+G  Y+ +ECA  L    ++VT++          F   +A+   E+ +  G+KF+
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 102 KGTVLSSFDVDSNGK--VVAVNLRDGN-----RLPTDMVVVGIG 138
           +  V +  +    G    + V  +  N         + V++ +G
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
           G +A+ V     L +       +    G   VV+GG    +E             M+   
Sbjct: 1   GVNAKGVFDHATLVEE------LDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54

Query: 74  AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV---NLRDGNRLPT 130
                       A   +   +   ++ + G+ ++  + D+NG+V AV         R+ T
Sbjct: 55  EPLKLIKDNETRAYVLDRMKEQG-MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET 113

Query: 131 DMVVVGIG 138
           D V +G+G
Sbjct: 114 DFVFLGLG 121

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 56.4 bits (135), Expect = 4e-10
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 21/159 (13%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK-- 102
           +++G G  G   A       +   ++           T ++ ++  +     G   ++  
Sbjct: 9   LILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68

Query: 103 GTVLSSFDVD-SNGKVVAVNLRDG--------NRLPTDMVVVGIGIRP-----NTSLFEG 148
               + F+ +     +  V+L++              D +++  G        NT++FEG
Sbjct: 69  HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEG 128

Query: 149 QLTLEKGGIKVTGRL-----QSSNSSVYAVGDVAAFPLK 182
           QL LE G IKV   +     Q+S   V+A GDV     +
Sbjct: 129 QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--MARLFTPKIASYYEEYYKSKGVK 99
             A+ +GGGYI +E A      K     V        + R F  ++     E  ++ G+ 
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
                  +    +++G    V    G     D+V++ IG
Sbjct: 79  VRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIG 116

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 53.6 bits (128), Expect = 8e-10
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 42  GNAVVIGGGYIGMECAASLVINKIN---VTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 98
              + +GGG+I +E A      K     VT+ +     +   F   +     +   + G+
Sbjct: 21  RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGI 79

Query: 99  KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137
           + +     +  +++++G    V    G ++  D+V++ I
Sbjct: 80  QILTKENPAKVELNADGSKS-VTFESGKKMDFDLVMMAI 117

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 45/204 (22%)

Query: 45  VVIGGGYIGMECAASLVIN--KINVTMVFPEAH--------------------------- 75
           ++IGGG      A S+        V +V  +                             
Sbjct: 8   LLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFK 67

Query: 76  --------CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR 127
                      +  +  +++    + ++ GV  + G  +   DV  N       L DG++
Sbjct: 68  QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMV----KLNDGSQ 123

Query: 128 LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS---SNSSVYAVGDVAAFPLKLL 184
           +  +  ++  G             LE        R+ +   + S+++  GD A F    L
Sbjct: 124 ITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKL 183

Query: 185 GETRRLEHVDSARKSAKHAVAAIM 208
           G  RR+EH D A  S + A   + 
Sbjct: 184 GR-RRVEHHDHAVVSGRLAGENMT 206

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 12/152 (7%)

Query: 12  LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
           + G+DA     L            +        +     ++    A  L      VT+V 
Sbjct: 15  IPGADASLPDQL-TPEQVMDGKKKIGKRV--VILNADTYFMAPSLAEKLATAGHEVTIVS 71

Query: 72  PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
                    FT +             V+ +     S  +         + + +     + 
Sbjct: 72  GVHLANYMHFTLEY-PNMMRRLHELHVEELGDHFCSRIEPGR------MEIYNIWGDGSK 124

Query: 132 MVVVGIGIRPNTSLFEGQLTLE-KGGIKVTGR 162
               G G+ P  +    +  +E    + VTGR
Sbjct: 125 RTYRGPGVSPRDANTSHR-WIEFDSLVLVTGR 155

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 51.0 bits (121), Expect = 7e-09
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
            + VV+GGGYIG+E   +       V++V      +    +   A    E  K  G+   
Sbjct: 22  QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTA-PVAESLKKLGIALH 80

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG 138
            G  +  ++   NG ++A + + G  RL  D V+V +G
Sbjct: 81  LGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAVG 115

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 12/169 (7%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTPKIASYYEEYYKSKGVK 99
           V++G G  G E A  L      VT++  E            +          +  S    
Sbjct: 4   VIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWY 62

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 159
             +G  +   +           +           +V     PN  L          GI +
Sbjct: 63  RKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILI 122

Query: 160 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208
               ++S   VYA+GD A +   + G         +A + A+     + 
Sbjct: 123 DDNFRTSAKDVYAIGDCAEYSGIIAG------TAKAAMEQARVLADILK 165

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 44/233 (18%), Positives = 67/233 (28%), Gaps = 74/233 (31%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMV---------------------------------- 70
           +V+G G  G   A         VT+V                                  
Sbjct: 7   LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66

Query: 71  ------------FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT----VLSSFDVDSN 114
                       F +          K+    E   K   V+ VKG       ++  V + 
Sbjct: 67  EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126

Query: 115 GKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSS 166
                   ++         +  +G RPNT      L LE+ GIK+T R         ++S
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDE----LGLEQIGIKMTNRGLIEVDQQCRTS 182

Query: 167 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYL 219
             +++A+GD+   P         L H   A    K A  AI         DY+
Sbjct: 183 VPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIA--GHPSAVDYV 223

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G  ++IGGG IG+E           + +V      M +     +   +++  + +    +
Sbjct: 27  GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADRDLVKVWQKQNEYRFDNIM 85

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIG 138
             T   + +   +G  V     +  +     D V+V  G
Sbjct: 86  VNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
           G +V++G GYI +E A  L       +++      +   F   I++   E  ++ GV+ +
Sbjct: 23  GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVL 81

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-------DMVVVGIG 138
           K + +       +G  V++      RLP        D ++  IG
Sbjct: 82  KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.2 bits (114), Expect = 7e-08
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 43  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
              VIG G IG+E   S+         V             ++A   ++    +G+K + 
Sbjct: 24  KLGVIGAGVIGLEL-GSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL 82

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIG 138
           G  ++  +V +    V     +G +    D ++V +G
Sbjct: 83  GARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 36/221 (16%), Positives = 57/221 (25%), Gaps = 65/221 (29%)

Query: 43  NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---------CMARLFTPKIASYYEEYY 93
           +A+ IGGG  G   +A L        +V              C+        A+      
Sbjct: 44  DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLAR 103

Query: 94  KSKGVKFVKGTVLSSFDVDSNGKVVAVNL------------------------------- 122
              G  +          +     +                                    
Sbjct: 104 TFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNH 163

Query: 123 ---RDGNRLPTDMVVVGIGIRPNT------------SLFEGQLTLEKGGIKVTGRLQSSN 167
                G       +++ +G  P T            +   G     KG + V   LQ+S 
Sbjct: 164 TVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSV 223

Query: 168 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208
            +VYAVGD+   P+              ARKS  +A   +M
Sbjct: 224 PNVYAVGDLIGGPM--------EMFK--ARKSGCYAARNVM 254

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 42  GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
               +IGGG IG+E  +        VT+V  +    A     ++A   +++ K +G+ F 
Sbjct: 24  KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFK 82

Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVV 135
             T + S   + +  VV + + D        L  ++++V
Sbjct: 83  LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV 121

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 24/186 (12%)

Query: 40  SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 97
           +G   VV+GGG  G   A  + +    I VT++ P         + ++     +    K 
Sbjct: 1   AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH 60

Query: 98  VKFVKG----TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------- 145
                      V+       +     V    G     D  VV  GI              
Sbjct: 61  GYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120

Query: 146 ---FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 202
                         + +     S +  ++ +GD +             +   SA    K 
Sbjct: 121 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIAN-------PMPKSGYSANSQGKV 173

Query: 203 AVAAIM 208
           A AA++
Sbjct: 174 AAAAVV 179

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 23/161 (14%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMV----------------FPEAHCMARLFTPKIASY 88
            ++G G      A      ++   +                   +           +   
Sbjct: 9   CIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVE 68

Query: 89  YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR-----PNT 143
             + ++ +  +F       +               D   +  D V++ IG       P T
Sbjct: 69  LTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPAT 128

Query: 144 SLFEGQLTLEKGGIKVT--GRLQSSNSSVYAVGDVAAFPLK 182
              +G + L+  G  VT  G  Q+S   V+A GDV     +
Sbjct: 129 KFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 43  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
           + VVIGGGYIG+E   +       VT++      ++  F  ++A+  ++  K KGV+ V 
Sbjct: 24  SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT 82

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVV 135
             +    +   +G  V        + +  D V+V
Sbjct: 83  NALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 16/156 (10%)

Query: 43  NAVVIGGGYIGMECAASLVINKINVTMV----------------FPEAHCMARLFTPKIA 86
           + +++G G  G   A       I   ++                +               
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62

Query: 87  SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 146
             + + Y    +     + L    V+     +        +  + +V  G  +     L 
Sbjct: 63  KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122

Query: 147 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 182
                   G I +  + +++   V+A GD    P K
Sbjct: 123 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 37/225 (16%), Positives = 57/225 (25%), Gaps = 62/225 (27%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMV--------FPEAHCMARLFTPKIASYYEEYYKSK 96
           +VIGGG  G+  A           +V             C+ +      A + E  +   
Sbjct: 7   LVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHA 66

Query: 97  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL---------------------------- 128
              F       ++ V    +   V+  +                                
Sbjct: 67  DYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVS 126

Query: 129 ------------PTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYA 172
                          M        PNT        G  T +KG I V     ++   +YA
Sbjct: 127 GKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYA 186

Query: 173 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD 217
           VGDV    L        L  V  A  + +     + E  +  K D
Sbjct: 187 VGDVCGKAL--------LTPV--AIAAGRKLAHRLFEYKEDSKLD 221

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 43  NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
             VVIG GYIG+E  +        VT+V   +  +      +I   ++   + +G+KF  
Sbjct: 27  KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-PTMDAEIRKQFQRSLEKQGMKFKL 85

Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVV 135
            T +   D   +G  + V    G     +  D+V+V
Sbjct: 86  KTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 29/162 (17%), Positives = 45/162 (27%), Gaps = 47/162 (29%)

Query: 14  GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV------------ 61
           G D   V    D+      V       G    +IG G IG + A  L             
Sbjct: 9   GIDHPKVLSYLDVLRDKAPV-------GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAG 61

Query: 62  -------------------------INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 96
                                     +   + M+  +A    +         +     S+
Sbjct: 62  FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSR 121

Query: 97  GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
           GVK + G       +D +G  V +N  +   L  D VV+  G
Sbjct: 122 GVKMIPGVSYQK--IDDDGLHVVIN-GETQVLAVDNVVICAG 160

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 18/178 (10%)

Query: 33  VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 92
           V +  +    + V       G    A +V N   VT       CM             E 
Sbjct: 147 VKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDP--------NVIEL 198

Query: 93  YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL-T 151
              K       +      + + G                  +V I         +G    
Sbjct: 199 AGYKNDGTRDLSQKHGVILSTTGH------DGPFGAFCAKRIVDIDQNQKLGGMKGLDMN 252

Query: 152 LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209
             +  + +     +   ++Y  G   A      G  R      +   S  HA   I++
Sbjct: 253 HAEHDVVIHSGAYAGVDNMYFAGMEVAEL---DGLNRMGPTFGAMALSGVHAAEQILK 307

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 54  MECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 113
               A+  +   NV +               +    E  +K   V +VKG        + 
Sbjct: 64  KHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEI 123

Query: 114 NGKVVAVNLRDGNRLPTDMVVVG---IGIRPNTSLFE----GQLTLEKGGIKVTGRLQSS 166
           +   +             ++  G    G  P TS       G  T + G I V  R  ++
Sbjct: 124 SVDTIEGENTVVKGKHI-IIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTN 182

Query: 167 NSSVYAVGDVAAFP 180
            S VYA+GDV   P
Sbjct: 183 VSGVYAIGDVIPGP 196

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 216 FDYLPFFYSRVFTLSWQFYGDNVGE---VVHYGNFSGTTFGAYWVNKGRLVG 264
           +  LP+++S    L  Q  G   G+   V    +     F    + KGR+VG
Sbjct: 5   YAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVG 56

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 87  SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSL 145
           SY   +  ++G+ F +G      +     +  A         L T+ +++  G  P    
Sbjct: 108 SYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLG 167

Query: 146 FEGQ----LTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFPL 181
            E      L LEK G++V            +++  ++YA+GDV    +
Sbjct: 168 IEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 15/191 (7%)

Query: 45  VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
            ++G G   + CA+ L     +   +F +   +  L T +I  +   Y        +   
Sbjct: 8   ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKD 67

Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG--- 161
           +        +     + L            +GIG+       + +  L            
Sbjct: 68  LGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPE 127

Query: 162 ----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME--PDKTDK 215
                +Q+S   V+A GD+             +E V+  ++++ +    I          
Sbjct: 128 VDPETMQTSEPWVFAGGDIVG------MANTTVESVNDGKQASWYIHKYIQAQYGASVSA 181

Query: 216 FDYLPFFYSRV 226
              LP FY+ V
Sbjct: 182 KPELPLFYTPV 192

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.9 bits (83), Expect = 9e-04
 Identities = 8/52 (15%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 215 KFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVG 264
           + +  P+F+S  + +  +  G + G   ++  G+ +   F  +++   R++ 
Sbjct: 3   RDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLA 54

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 146 FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA 205
               + ++ GG++V    +++ S++YA+GDV             L  V  A   A   V 
Sbjct: 179 QNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRV--------MLTPV--AINEAAALVD 228

Query: 206 AIM--EPDKT 213
            +    P KT
Sbjct: 229 TVFGTTPRKT 238

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 148 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 181
           G    ++G I+V  +++++   +YA+GD+   P+
Sbjct: 172 GVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 40  SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGV 98
                ++IGGG +G+     L+     +T+V P+ H  +   F   I +  +  Y+    
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71

Query: 99  KFV 101
           +F+
Sbjct: 72  RFI 74

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 41  GGNAVVIGGGYIGMECAASLV-INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 99
            G  +V+G G    +CA S +      V +VF +     R    ++    EE  +     
Sbjct: 45  RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFL 104

Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNR---------LPTDMVVVGIG 138
             +  ++    + +   V       G           L  D+V+   G
Sbjct: 105 SPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.93
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.93
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.92
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.92
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.92
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.9
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.9
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.89
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.88
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.86
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.85
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.84
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.82
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.82
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.82
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.82
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.81
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.8
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.79
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.78
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.78
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.78
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.77
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.75
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.75
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.75
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.75
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.75
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.74
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.73
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.7
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.69
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.61
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.6
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.6
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.56
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.53
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.52
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.49
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.39
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.38
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.31
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.28
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.25
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.24
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.24
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.24
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.21
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.17
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.14
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.09
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	99.06
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	99.05
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.04
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.03
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.99
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.92
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.87
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.86
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.84
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.82
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.8
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.75
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.73
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.71
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.7
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.66
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.62
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.61
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.6
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.6
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.58
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	98.58
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.57
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.56
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.56
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	98.55
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	98.55
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.52
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.51
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.49
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.48
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	98.47
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.4
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.4
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.4
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	98.39
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.36
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.33
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.27
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.18
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.16
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.12
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.1
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.93
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.86
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.73
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.58
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.53
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.52
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.22
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.04
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.99
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.96
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.89
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.67
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.53
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.37
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.27
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.21
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.21
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.21
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.16
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.96
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.65
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.44
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	94.97
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.83
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.79
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.79
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.71
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.03
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.96
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.87
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.67
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.65
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.55
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.38
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.36
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	93.27
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.26
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.21
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.17
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.99
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.77
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.73
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.65
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	92.64
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.59
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	92.51
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.15
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.11
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.06
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.91
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.89
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.89
d1xhca3	62	NADH oxidase /nitrite reductase {Pyrococcus furios	91.88
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.83
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.7
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.68
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.55
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.49
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.31
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.07
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.07
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.04
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.81
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.77
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.51
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.3
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.28
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.27
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.15
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.09
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.08
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.74
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	89.72
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.64
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.63
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.52
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	89.44
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.41
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	89.39
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.38
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.35
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.08
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	88.94
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.92
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.86
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.62
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.57
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	88.56
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.56
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.53
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.5
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.47
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	88.4
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.25
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.21
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.2
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.14
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.1
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.98
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.93
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.82
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	87.8
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	87.78
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	87.75
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.68
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	87.48
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	87.48
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.25
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.2
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.18
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	87.13
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.09
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.03
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.65
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	86.47
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.46
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.38
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.18
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.97
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.92
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.85
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	85.81
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.75
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.55
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.47
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.37
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	85.08
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.01
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.92
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.82
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.69
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.56
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.55
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	84.54
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.39
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.33
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	84.32
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.3
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.0
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	83.86
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.72
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	83.64
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	83.63
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.55
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	83.52
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	83.45
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.28
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.2
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.07
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	82.98
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	82.87
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.86
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.74
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	82.7
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	82.63
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	82.5
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	82.33
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.3
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	82.21
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	82.13
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	81.76
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	81.74
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	81.39
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.26
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.21
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.01
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.8
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	80.76
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	80.74
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	80.74
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	80.71
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	80.65
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	80.52
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.49
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	80.48
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	80.47
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	80.38

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.93  E-value=4.7e-26  Score=195.62  Aligned_cols=163  Identities=23%  Similarity=0.335  Sum_probs=130.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH----------HHHHhCCCEEEcCCeeeEEEE
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE----------EYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~----------~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      .+|+|||||++|+|+|..|+++|.+|+++.+.++.++....+.+...+.          +.+...+|++++++.+++++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            5699999999999999999999999888877666655422233222222          123456899999999999974


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc------cccccCcEEEeccccCCCCcEEEEcccccccccccC
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ------LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG  185 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~------~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g  185 (358)
                        +..  .+.+.+|+++++|.+++|+|..|++.+.+..      +. .+++|.||+++||+.|+|||+|||+..+++..|
T Consensus        84 --~~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 --QAH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             --TTT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             --ccc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEeccceeccccccchhhhhhccceeeCC
Confidence              232  4678899999999999999999987544321      22 356799999999999999999999999988888


Q ss_pred             cccccccHHHHHHHHHHHHHHHcC
Q 018320          186 ETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       186 ~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      ...+++++..|.+||+.||+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            888889999999999999999974

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.93  E-value=2.6e-25  Score=178.51  Aligned_cols=120  Identities=33%  Similarity=0.505  Sum_probs=111.2

Q ss_pred             CCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHH
Q 018320           10 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY   89 (358)
Q Consensus        10 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~   89 (358)
                      ++|||.+.+ ||++||++|+.++++.+.  ++++++|||||++|+|+|..|+++|.+||+++++++++++.+|+++++.+
T Consensus         2 P~ipG~~~~-v~~lrtl~Da~~l~~~~~--~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~   78 (121)
T d1d7ya2           2 PTLQGATMP-VHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFV   78 (121)
T ss_dssp             GGGTTCSSC-EEECCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred             ccCCCCCCC-EEEeCCHHHHHHHHHhhh--cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHH
Confidence            468999865 999999999999999986  57999999999999999999999999999999999999977999999999


Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  138 (358)
                      .+.|+++||+++++++++++..   +   .+.++||++++||+||+|+|
T Consensus        79 ~~~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          79 ARYHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            9999999999999999999863   3   46789999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.92  E-value=3.6e-25  Score=178.21  Aligned_cols=123  Identities=24%  Similarity=0.388  Sum_probs=113.4

Q ss_pred             CCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHH
Q 018320           12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE   91 (358)
Q Consensus        12 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~   91 (358)
                      |||.+++|||++|+++|+.++++.+...++++++|||||++|+|+|..|+++|.+||++++.++++++.+|+++++.+++
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            79999999999999999999999998777899999999999999999999999999999999999998899999999999


Q ss_pred             HHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320           92 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        92 ~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                      .|+++||++++++.+++++.  ++.+..+ +.||++++||+||+|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999985  4444334 5789999999999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=9e-25  Score=186.94  Aligned_cols=167  Identities=24%  Similarity=0.335  Sum_probs=131.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH--------------HHHHHHHHHHHhCCCEEEcCCe
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP--------------KIASYYEEYYKSKGVKFVKGTV  105 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~--------------~~~~~~~~~l~~~gV~v~~~~~  105 (358)
                      ..++|||||||++|+|+|..|+++|.+|+++++.++........              .........+...++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            36899999999999999999999999998887766543211111              1111223445667888888888


Q ss_pred             eeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC---hhhhhcccccccCcEEEeccccCCCCcEEEEccccccccc
Q 018320          106 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN---TSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK  182 (358)
Q Consensus       106 v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~---~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~  182 (358)
                      +..++. +..   .+.+.++.++++|.+++++|.+|+   ..+++......+++|.||++|||+.|+|||+|||+..+..
T Consensus        82 ~~~~~~-~~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~  157 (185)
T d1q1ra1          82 VTAINR-DRQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQ  157 (185)
T ss_dssp             EEEEET-TTT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEET
T ss_pred             eeeecc-ccc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhccccc
Confidence            888764 222   466788899999999999998764   4555544333567899999999999999999999999998


Q ss_pred             ccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320          183 LLGETRRLEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       183 ~~g~~~~~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      .++.+.+++++..|.+||+.||+||+|+
T Consensus       158 ~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         158 LYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             TTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            8898888999999999999999999984

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.92  E-value=1.2e-24  Score=189.20  Aligned_cols=166  Identities=22%  Similarity=0.318  Sum_probs=131.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCccCCHHH--------------HHHHHHHHHhCCCEEEcCCee
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKI--------------ASYYEEYYKSKGVKFVKGTVL  106 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~~~~~~--------------~~~~~~~l~~~gV~v~~~~~v  106 (358)
                      ||+|||||++|+|+|..|+++  +.+|+++++.+.+..  .++.+              .....+.|+++||++++++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            699999999999999999987  457999998775421  12212              122345788999999999999


Q ss_pred             eEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCC--------CChhhhhccccc-ccCcEEEeccccCCCCcEEEEcc
Q 018320          107 SSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIR--------PNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGD  175 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~--------p~~~l~~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD  175 (358)
                      ++++. ++..+....+.+|+  ++++|.+++++|..        |++.+++..+.+ ++|+|.||+++||+.|+|||+||
T Consensus        80 ~~i~~-~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD  158 (198)
T d1nhpa1          80 TAIQP-KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGD  158 (198)
T ss_dssp             EEEET-TTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred             eeEee-ccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecc
Confidence            99986 33333322345554  57899999999865        456666666555 78999999999999999999999


Q ss_pred             cccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          176 VAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       176 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      |+..+....+...+++++..|.+||+.||+||.+..
T Consensus       159 ~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~  194 (198)
T d1nhpa1         159 ATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  194 (198)
T ss_dssp             GSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             eeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence            999888777888888899999999999999997654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=1.6e-23  Score=176.54  Aligned_cols=153  Identities=21%  Similarity=0.318  Sum_probs=117.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHH-------------HHHHHHhCCCEEEcCCeeeEE
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASY-------------YEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~-------------~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      ||+|||||++|+|+|..|++ +.+||++++.+.+..  .++.+.+.             ..+.+++.++++++++.++++
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999975 679999998765321  22222222             235677889999999999999


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEeccccCCCCcEEEEcccccccccccCcccc
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR  189 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~  189 (358)
                      +.  +.+   +.+.++.++++|.+++++|..|+..+....+... ++|.||+++||+.|+|||+|||+..+..+      
T Consensus        79 ~~--~~~---~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~------  146 (167)
T d1xhca1          79 DR--GRK---VVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------  146 (167)
T ss_dssp             ET--TTT---EEEESSCEEECSEEEECCCEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------
T ss_pred             cc--ccc---cccccccccccceeEEEEEecCCchhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE------
Confidence            63  332   3456778899999999999977643333345554 46999999999999999999999876543      


Q ss_pred             cccHHHHHHHHHHHHHHHcCC
Q 018320          190 LEHVDSARKSAKHAVAAIMEP  210 (358)
Q Consensus       190 ~~~~~~A~~~g~~aa~~i~g~  210 (358)
                      ++.+..|++||+.+|+||+|+
T Consensus       147 ~~~~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         147 AGTAKAAMEQARVLADILKGE  167 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTC
T ss_pred             EChHHHHHHHHHHHHHHcCCC
Confidence            356888999999999999874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=2.5e-23  Score=169.55  Aligned_cols=121  Identities=38%  Similarity=0.674  Sum_probs=112.2

Q ss_pred             CCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHh
Q 018320           16 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS   95 (358)
Q Consensus        16 ~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~   95 (358)
                      +.++++++|+++|+.++++.+.  .+++++|||||++|+|+|..|+++|.+||++++.++++++.+++++++.+++.+++
T Consensus        12 ~~~~v~~lr~~~d~~~l~~~~~--~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~   89 (133)
T d1q1ra2          12 KANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE   89 (133)
T ss_dssp             HSTTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH
T ss_pred             ccCCeeEeCCHHHHHHHHHhhc--cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccc
Confidence            4679999999999999998876  57999999999999999999999999999999999999987899999999999999


Q ss_pred             CCCEEEcCCeeeEEEEc-CCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320           96 KGVKFVKGTVLSSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        96 ~gV~v~~~~~v~~i~~~-~~g~v~~v~~~~g~~i~~D~vi~a~G  138 (358)
                      +||++++++++++++.. +++.+..+.++||+++++|.||+|+|
T Consensus        90 ~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          90 AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            99999999999999864 34567779999999999999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=3e-23  Score=166.62  Aligned_cols=121  Identities=26%  Similarity=0.496  Sum_probs=107.8

Q ss_pred             CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320            6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI   85 (358)
Q Consensus         6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~   85 (358)
                      +|+.++|||.+  ++|++++++|++++.+.+.  .+++++|||||++|+|+|..|+++|++||++++.+++++  +|+++
T Consensus         1 R~r~p~ipG~e--~~~t~~~~~d~~~l~~~~~--~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~   74 (122)
T d1xhca2           1 RAREPQIKGKE--YLLTLRTIFDADRIKESIE--NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEEL   74 (122)
T ss_dssp             EECCCCSBTGG--GEECCCSHHHHHHHHHHHH--HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHH
T ss_pred             CCCCcCCCCcc--ceEccCCHHHHHHHHHHhh--cCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHH
Confidence            35555689974  7999999999999999987  468999999999999999999999999999999999886  89999


Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                      ++.+.+.|+++||++++++++++++.  ++    + +.+++.+++|.||+|+|.
T Consensus        75 ~~~~~~~l~~~GV~~~~~~~v~~~~~--~~----v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          75 SNMIKDMLEETGVKFFLNSELLEANE--EG----V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHTTEEEECSCCEEEECS--SE----E-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEeC--CE----E-EeCCCEEECCEEEEEEEe
Confidence            99999999999999999999999863  32    2 457889999999999995

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.7e-24  Score=186.49  Aligned_cols=164  Identities=25%  Similarity=0.391  Sum_probs=125.8

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcc------cCccC---------------------------CHH--
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC------MARLF---------------------------TPK--   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~------l~~~~---------------------------~~~--   84 (358)
                      .++||||||++|+++|..|++++.  +|+++.+.+.+      ++..+                           +++  
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            568999999999999999998875  59999875442      10000                           000  


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh-hhhhc-cccc--ccCcEEEe
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT-SLFEG-QLTL--EKGGIKVT  160 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~-~l~~~-~~~~--~~g~i~vd  160 (358)
                      ........+++.||+++++++|++|+.+ +.   .|.++||++++||.+|+|+|..|+. ++... ++.+  ..++|.||
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~-~~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd  160 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVN  160 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECC
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeecc-Cc---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhh
Confidence            0011123356789999999999999753 22   5788999999999999999977554 44433 3444  45899999


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      ++|||+ |+|||+|||+..++...|. .+++++..|+.||+.||+||+|..
T Consensus       161 ~~l~~~-~~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         161 AELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             TTCEEE-TTEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             HhcCcC-CceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCCC
Confidence            999998 9999999999998876665 467899999999999999999876

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.6e-21  Score=154.96  Aligned_cols=116  Identities=19%  Similarity=0.280  Sum_probs=101.2

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH
Q 018320           11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   90 (358)
Q Consensus        11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~   90 (358)
                      +|||.+  .   +.+.+++..+.     ..|++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+.
T Consensus         1 diPG~e--~---~~t~~~~~~l~-----~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~   69 (116)
T d1gesa2           1 DIPGVE--Y---GIDSDGFFALP-----ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLV   69 (116)
T ss_dssp             CSTTGG--G---SBCHHHHHHCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHH
T ss_pred             CcCCcc--c---cCCHHHHhChh-----hCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHH
Confidence            378875  2   24566665542     24799999999999999999999999999999999999986 8999999999


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G  138 (358)
                      +.|+++||++++++.+++++.++++.+ .+++++|+++++|.||+|+|
T Consensus        70 ~~l~~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          70 EVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            999999999999999999988666654 58889999999999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-21  Score=157.61  Aligned_cols=118  Identities=26%  Similarity=0.519  Sum_probs=107.6

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHh----CCCcEEEEeeCCcccCccCCHHHHHHHHHHH
Q 018320           18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCMARLFTPKIASYYEEYY   93 (358)
Q Consensus        18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~----~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l   93 (358)
                      ++++.+|+++|+.++.+.++  ++++++|||||++|+|+|..|++    .|.+||++++.++++++.+|+++++.+.+.|
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~--~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l   93 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV   93 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred             CcEEEEcCHHHHHHHHHHhh--cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH
Confidence            57999999999999999987  47899999999999999999964    5999999999999999889999999999999


Q ss_pred             HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320           94 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus        94 ~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                      +++||++++++.|++++.+ ++. ..+++.||++++||.||+|+|+
T Consensus        94 ~~~GV~~~~~~~V~~i~~~-~~~-~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          94 RREGVKVMPNAIVQSVGVS-SGK-LLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HTTTCEEECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCCE
T ss_pred             HhCCcEEEeCCEEEEEEec-CCE-EEEEECCCCEEECCEEEEeecC
Confidence            9999999999999999874 333 4688999999999999999994

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.84  E-value=1.1e-20  Score=151.13  Aligned_cols=118  Identities=24%  Similarity=0.372  Sum_probs=102.0

Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHH
Q 018320           14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY   93 (358)
Q Consensus        14 G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l   93 (358)
                      |.+.++||.      +..+.+.+...++++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++++.+++.|
T Consensus         1 G~~~~gv~~------~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l   73 (121)
T d1mo9a2           1 GVNAKGVFD------HATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRM   73 (121)
T ss_dssp             TTTSBTEEE------HHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHH
T ss_pred             CCCCCCEEe------HHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhh
Confidence            567889994      444555565557899999999999999999999999999999999999985 9999999999999


Q ss_pred             HhCCCEEEcCCeeeEEEEcCCCcEEEE---EcCCCcEEecCeEEEeeC
Q 018320           94 KSKGVKFVKGTVLSSFDVDSNGKVVAV---NLRDGNRLPTDMVVVGIG  138 (358)
Q Consensus        94 ~~~gV~v~~~~~v~~i~~~~~g~v~~v---~~~~g~~i~~D~vi~a~G  138 (358)
                      +++||++++++++++++.++++.+..+   ...+++++++|.||+|+|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999999999999999998777765444   334567899999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.84  E-value=1.1e-20  Score=150.34  Aligned_cols=115  Identities=16%  Similarity=0.228  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHH
Q 018320           10 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY   89 (358)
Q Consensus        10 ~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~   89 (358)
                      ++|||.+  +++   +.+++.++      ..+++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+
T Consensus         2 P~IpG~e--~~~---ts~~~~~l------~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~   69 (117)
T d1onfa2           2 PPVKGIE--NTI---SSDEFFNI------KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVL   69 (117)
T ss_dssp             CSCTTGG--GCE---EHHHHTTC------CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHH
T ss_pred             cccCCHh--HcC---chhHHhcc------CCCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHH
Confidence            5688875  444   33444322      25899999999999999999999999999999999999986 899999999


Q ss_pred             HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEe-cCeEEEee
Q 018320           90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP-TDMVVVGI  137 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~-~D~vi~a~  137 (358)
                      .+.|+++||++++++.+++++..+++.+ .+++++|++++ +|.|++|+
T Consensus        70 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          70 ENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEESSTTCE-EEEETTSCEEEEESEEEECC
T ss_pred             HHHHHhCCCEEEECCEEEEEEEcCCCeE-EEEECCCCEEEeCCEEEEeC
Confidence            9999999999999999999987666654 68899998875 79999985

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.82  E-value=7.4e-20  Score=160.41  Aligned_cols=157  Identities=24%  Similarity=0.260  Sum_probs=114.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc--------------------------c--------CccCCH----
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------------------------M--------ARLFTP----   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~--------------------------l--------~~~~~~----   83 (358)
                      ..++|||||+.|+++|..+++.|.+|++|++...-                          .        ...++.    
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            47999999999999999999999999999976410                          0        000111    


Q ss_pred             --------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee--------CCCCChhhh-
Q 018320           84 --------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI--------GIRPNTSLF-  146 (358)
Q Consensus        84 --------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~--------G~~p~~~l~-  146 (358)
                              .+...+...++..+|+++.+..  .+..  ..........+..++.+|.+++++        |++|+++.+ 
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                    1223334556778999987742  3432  222222333445678999999984        888998854 


Q ss_pred             -h-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018320          147 -E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  212 (358)
Q Consensus       147 -~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  212 (358)
                       + .++++ ++|+|.||++||||.|+|||+|||+..+.          ++..|..||+.||++|+|...
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~~~  218 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGHPS  218 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSCCC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCC
Confidence             2 33666 68899999999999999999999987653          467899999999999998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.82  E-value=2.7e-20  Score=148.43  Aligned_cols=113  Identities=19%  Similarity=0.291  Sum_probs=93.5

Q ss_pred             CCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHH
Q 018320           15 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK   94 (358)
Q Consensus        15 ~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~   94 (358)
                      .|.+++++   -+++..+    + ..|++++|||||++|+|+|..|+++|++||++++.+++++. +|+++++.+++.|+
T Consensus         4 ~d~~~v~~---s~~~l~l----~-~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~   74 (119)
T d3lada2           4 VDQDVIVD---STGALDF----Q-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILT   74 (119)
T ss_dssp             CCSSSEEE---HHHHTSC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHH
T ss_pred             CCCCEEEc---hhHhhCc----c-cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHH
Confidence            44567773   3333322    2 25899999999999999999999999999999999999996 89999999999999


Q ss_pred             hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC---cEEecCeEEEeeC
Q 018320           95 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIG  138 (358)
Q Consensus        95 ~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G  138 (358)
                      ++||++++++++++++.++++.  .+++.++   ++++||.|++|+|
T Consensus        75 ~~Gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          75 KQGLKILLGARVTGTEVKNKQV--TVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HTTEEEEETCEEEEEEECSSCE--EEEEESSSEEEEEEESEEEECSC
T ss_pred             hcCceeecCcEEEEEEEeCCEE--EEEEEECCCCEEEECCEEEEeeC
Confidence            9999999999999999865553  3444333   5799999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.7e-20  Score=149.14  Aligned_cols=96  Identities=23%  Similarity=0.333  Sum_probs=87.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .+++++|||||++|+|+|..|+++|.+||++++.++++|. +|+++++.+++.|+++||++++++++++++.++++....
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~  100 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVE  100 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEE
Confidence            5799999999999999999999999999999999999996 899999999999999999999999999998877776666


Q ss_pred             EEcCCC-----cEEecCeEEEe
Q 018320          120 VNLRDG-----NRLPTDMVVVG  136 (358)
Q Consensus       120 v~~~~g-----~~i~~D~vi~a  136 (358)
                      +.+.++     +++++|.|++|
T Consensus       101 ~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         101 IVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEeCCCCCeEEEEeCEEEEC
Confidence            666543     47999999986

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.82  E-value=3.3e-20  Score=149.08  Aligned_cols=122  Identities=17%  Similarity=0.165  Sum_probs=99.9

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   86 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~   86 (358)
                      |+.+.||+.  ++++   |.+++..+    . ..+++++|||||++|+|+|..|+++|.+||++++++++++. +|++++
T Consensus         2 ~~lP~ip~~--~~i~---ts~~~l~l----~-~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~   70 (125)
T d1ojta2           2 TKLPFIPED--PRII---DSSGALAL----K-EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLV   70 (125)
T ss_dssp             CCCSSCCCC--TTEE---CHHHHTTC----C-CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHH
T ss_pred             CCCCCCCCC--CcEE---cHHHhhCc----c-ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHH
Confidence            555567753  5676   34444332    2 25899999999999999999999999999999999999996 899999


Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGI  139 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~  139 (358)
                      +.+.+.|+++||++++++.+++++.++++....++..+|  +++++|.|++|+|+
T Consensus        71 ~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          71 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             HHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             HHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            999999999999999999999999766664444444544  47999999999995

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.81  E-value=5.2e-20  Score=166.38  Aligned_cols=152  Identities=24%  Similarity=0.274  Sum_probs=108.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------cCCH-H
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFTP-K   84 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~~-~   84 (358)
                      .++|||||++|+++|..++++|.+|+++++.+.+...                                     ..+. .
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            5999999999999999999999999999987764210                                     0110 0


Q ss_pred             HHHH------------HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhc----
Q 018320           85 IASY------------YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG----  148 (358)
Q Consensus        85 ~~~~------------~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~----  148 (358)
                      ....            ..+.+...++....+...+-+.   +.   .+. .+|++++||.+++|+|.+|++..+..    
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d---~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~  196 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID---NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS  196 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE---TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee---ec---ccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence            0000            1112233344444333322221   12   122 36789999999999999999764321    


Q ss_pred             -------cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          149 -------QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       149 -------~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                             ++++ ++|.|.||++||||+|+|||+|||+..+.          ++..|+.||+.||.||+|..
T Consensus       197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCCC
Confidence                   2555 68899999999999999999999987653          57789999999999999865

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.80  E-value=9.4e-20  Score=144.82  Aligned_cols=114  Identities=18%  Similarity=0.355  Sum_probs=95.5

Q ss_pred             CCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCC---CcEEEEeeCCcccCccCCHHHHHH
Q 018320           12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCMARLFTPKIASY   88 (358)
Q Consensus        12 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g---~~Vtlv~~~~~~l~~~~~~~~~~~   88 (358)
                      |||.+  +   +.|.+++..+    + ..+++++|||||++|+|+|..|.+++   .+||++++++++++. +|+++++.
T Consensus         1 iPG~~--~---~~t~~~~~~l----~-~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~   69 (117)
T d1aoga2           1 IPGIE--H---CISSNEAFYL----P-EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREE   69 (117)
T ss_dssp             CTTGG--G---CBCHHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHH
T ss_pred             CcCcc--c---eEcHHHHhCc----h-hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHH
Confidence            57765  2   3455555433    2 25799999999999999998877654   579999999999986 89999999


Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                      +.+.|+++||++++++++++++.+.++.+ .+.+++|++++||.||+|+
T Consensus        70 l~~~l~~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          70 LTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             HHHHHHhcCcEEEcCCEEEEEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            99999999999999999999987666655 5889999999999999985

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.80  E-value=1.2e-19  Score=159.17  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=114.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cCC---
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFT---   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~~---   82 (358)
                      -.|+|||||++|+++|..+++.|.+|++|++.+.+...                                    .+.   
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            47999999999999999999999999999987654210                                    000   


Q ss_pred             ---------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE-EEEcCCCcEEecCeEEEeeC-----CCCChhhh-
Q 018320           83 ---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV-AVNLRDGNRLPTDMVVVGIG-----IRPNTSLF-  146 (358)
Q Consensus        83 ---------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~-~v~~~~g~~i~~D~vi~a~G-----~~p~~~l~-  146 (358)
                               ..+...+...+++.+|+++.....  +..  +.... .....+...+.+|.||+|||     ++|+++.+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~--~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~  159 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK--FVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN  159 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE--EEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccc--ccc--ccccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence                     112233445667788998865422  221  11111 11223446789999999998     56788744 


Q ss_pred             -hc-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          147 -EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       147 -~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                       +. .+++ +.|+|.||+++|||+|+|||+|||+..+.          ++..|..+|+.||++|+|+.
T Consensus       160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTSC
T ss_pred             hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCC
Confidence             22 3666 78999999999999999999999997653          57789999999999999876

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.79  E-value=3.7e-19  Score=141.32  Aligned_cols=98  Identities=19%  Similarity=0.346  Sum_probs=89.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  116 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~  116 (358)
                      .|++++|||||++|+|+|..|+++   |.+||++++++++++. +|+++++.+++.|+++||++++++.+++|+.++++.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            479999999999999999877654   8899999999999986 899999999999999999999999999998756665


Q ss_pred             EEEEEcCCCcEEecCeEEEeeCC
Q 018320          117 VVAVNLRDGNRLPTDMVVVGIGI  139 (358)
Q Consensus       117 v~~v~~~~g~~i~~D~vi~a~G~  139 (358)
                       ..+.+++|++++||.||+|+|+
T Consensus        96 -~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 -RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -EEEEETTSCEEEESEEEECSCE
T ss_pred             -EEEEECCCCEEEcCEEEEecCC
Confidence             4688999999999999999995

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.3e-19  Score=143.30  Aligned_cols=117  Identities=21%  Similarity=0.275  Sum_probs=94.7

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH
Q 018320           11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   90 (358)
Q Consensus        11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~   90 (358)
                      .|||.+.  +   .|.+++.++.     ..+|+++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+.
T Consensus         2 ~IPG~e~--~---~ts~~~~~l~-----~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~   70 (125)
T d3grsa2           2 QIPGASL--G---ITSDGFFQLE-----ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCT   70 (125)
T ss_dssp             TSTTGGG--S---BCHHHHTTCC-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHH
T ss_pred             CCCCccc--c---CCHHHHhChh-----hcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHH
Confidence            4788753  3   3445554432     24799999999999999999999999999999999999986 8999999999


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEE-EEcCCCc------EEecCeEEEeeC
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGN------RLPTDMVVVGIG  138 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~-v~~~~g~------~i~~D~vi~a~G  138 (358)
                      +.|+++||++++++++++++.++++.... +...+|+      .+++|.|++|+|
T Consensus        71 ~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          71 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            99999999999999999998766663222 3333442      478999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.78  E-value=8.4e-19  Score=139.20  Aligned_cols=113  Identities=26%  Similarity=0.373  Sum_probs=92.0

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH
Q 018320           11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE   90 (358)
Q Consensus        11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~   90 (358)
                      ++|+.+  +++   +-+++..+.     ..|++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+.
T Consensus         2 ~~~~~~--~i~---~s~~~l~~~-----~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~   70 (117)
T d1ebda2           2 NFKFSN--RIL---DSTGALNLG-----EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIK   70 (117)
T ss_dssp             TBCCCS--SEE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHH
T ss_pred             cCCCCC--CEE---ChhHhhChh-----hcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHH
Confidence            467664  565   334443331     25799999999999999999999999999999999999997 8999999999


Q ss_pred             HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-CCC--cEEecCeEEEe
Q 018320           91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDG--NRLPTDMVVVG  136 (358)
Q Consensus        91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~~g--~~i~~D~vi~a  136 (358)
                      +.|+++||++++++.+++++.++++..  +.+ .+|  +++++|.|+++
T Consensus        71 ~~l~~~GI~i~~~~~v~~i~~~~~~~~--v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          71 KRLKKKGVEVVTNALAKGAEEREDGVT--VTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHTTCEEEESEEEEEEEEETTEEE--EEEEETTEEEEEEESEEEEC
T ss_pred             HHHHhcCCEEEcCCEEEEEEEcCCEEE--EEEEeCCCEEEEEeEEEEEC
Confidence            999999999999999999987555532  333 344  56999999974

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.78  E-value=4.4e-19  Score=142.13  Aligned_cols=97  Identities=25%  Similarity=0.358  Sum_probs=86.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .|++++|||||++|+|+|..|+++|.+||++++++++++. +|+++++.+.+.|+++||++++++++++++.++++....
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~  102 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT  102 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence            5899999999999999999999999999999999999986 899999999999999999999999999999766665445


Q ss_pred             EEcCC-C--cEEecCeEEEee
Q 018320          120 VNLRD-G--NRLPTDMVVVGI  137 (358)
Q Consensus       120 v~~~~-g--~~i~~D~vi~a~  137 (358)
                      +...+ |  ++++||.|++|.
T Consensus       103 ~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2         103 VEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEESSSCCCEEEEESEEECCC
T ss_pred             EEECCCCeEEEEEcCEEEEcC
Confidence            55543 3  458999999873

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=7.9e-19  Score=138.96  Aligned_cols=95  Identities=25%  Similarity=0.421  Sum_probs=83.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      .|++++|||||++|+|+|..|+++|++||++++.+++++. +|+++++.+.+.|+++||+++++++|++++   ++....
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~   95 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLA   95 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEE
Confidence            4799999999999999999999999999999999999997 899999999999999999999999999996   232222


Q ss_pred             EE-cCCCcEEecCeEEEeeC
Q 018320          120 VN-LRDGNRLPTDMVVVGIG  138 (358)
Q Consensus       120 v~-~~~g~~i~~D~vi~a~G  138 (358)
                      .. ..+++++++|.|++|+|
T Consensus        96 ~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          96 NDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ECSSSCCCEECCSCEEECCC
T ss_pred             EEcCCCeEEEEcCEEEEecC
Confidence            22 22346799999999998

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=3.7e-18  Score=151.47  Aligned_cols=158  Identities=19%  Similarity=0.258  Sum_probs=110.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC---CcEEEEeeCCc--------------c---------c---Cc----------cCC-
Q 018320           43 NAVVIGGGYIGMECAASLVINK---INVTMVFPEAH--------------C---------M---AR----------LFT-   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g---~~Vtlv~~~~~--------------~---------l---~~----------~~~-   82 (358)
                      +|+|||||+.|+++|..++++|   .+|+++|+..-              +         +   +.          .++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            7999999999999999887765   57999997531              0         0   00          011 


Q ss_pred             HH-----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcC--CCcEEEEEcCCCc--EEecCeEEEeeCCCCChhhh-
Q 018320           83 PK-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDS--NGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSLF-  146 (358)
Q Consensus        83 ~~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~l~-  146 (358)
                      +.           ....+...+++.||+++.+.... +....  ......+...+|+  ++++|.+|+++|.+|..... 
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~  161 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGEL-IDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSG  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-CCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGC
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECcccc-cccccccccceEEEEecCCceeeeecceeeeecCccccccccc
Confidence            01           11224556788899998774321 11100  1122345556664  68999999999998865321 


Q ss_pred             -----------hccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          147 -----------EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       147 -----------~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                                 ...+++ ++|+|.||++|||+.|+|||+|||+..+          .+...|..+|+.||.||+|..
T Consensus       162 ~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~~  228 (233)
T d1xdia1         162 SVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEG  228 (233)
T ss_dssp             EEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCCC
Confidence                       223555 5788999999999999999999998754          356689999999999999865

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=4.6e-18  Score=146.40  Aligned_cols=154  Identities=16%  Similarity=0.223  Sum_probs=121.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------------------CccCCHHHHHHHHHHHHhCCCEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------------ARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------------------~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      .++|+|||||++|+++|..|++.|.+|+++++.....                    .....+++...+++++++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            5799999999999999999999999999998654320                    01124677788888888999999


Q ss_pred             EcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC-----CCChhhhhccccc-ccCcEEEec-cccCCCCcEEEE
Q 018320          101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI-----RPNTSLFEGQLTL-EKGGIKVTG-RLQSSNSSVYAV  173 (358)
Q Consensus       101 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~-----~p~~~l~~~~~~~-~~g~i~vd~-~~~t~~~~VyAi  173 (358)
                      ..+ .|.+++..+++  ..+. .+.....+|.+++++|.     .|++.+++..+++ ++|.|.+|+ .++|+.|+|||+
T Consensus        85 ~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~  160 (192)
T d1vdca1          85 FTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAA  160 (192)
T ss_dssp             ECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred             eee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEe
Confidence            866 67888753333  3343 44567899999999884     5888998888877 788999985 899999999999


Q ss_pred             cccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320          174 GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       174 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  207 (358)
                      |||...+.         ..+..|..+|+.||..+
T Consensus       161 GDv~~~~~---------r~~v~A~g~G~~aA~~~  185 (192)
T d1vdca1         161 GDVQDKKY---------RQAITAAGTGCMAALDA  185 (192)
T ss_dssp             GGGGCSSC---------CCHHHHHHHHHHHHHHH
T ss_pred             eecCCccc---------ceEEEEEechHHHHHHH
Confidence            99987653         23567888999988765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=3.8e-18  Score=150.99  Aligned_cols=155  Identities=18%  Similarity=0.174  Sum_probs=111.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------------------------------------   79 (358)
                      .++|||||+.|+++|..+++.|.+|.|+|+.+.....                                           
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            6999999999999999999999999999965421000                                           


Q ss_pred             -cCCH------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320           80 -LFTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        80 -~~~~------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~  144 (358)
                       ..+-            .+...+...|++++|+++.+...  +..  .+. ..+...++.  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~--~~~-~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG--PHK-IMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE--TTE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc--ccc-eecccccccccccccccceeecCCCceeE
Confidence             0110            11222345667789999877543  321  222 345555553  588999999999998753


Q ss_pred             h-----------hhccccc--ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          145 L-----------FEGQLTL--EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       145 l-----------~~~~~~~--~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      .           ....+.+  ..|.|.||++||||+|+|||+|||+..+.         .++..|+.+|+.||++|+|..
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~---------~l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL---------ELTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCc---------ccHHHHHHHHHHHHHHHcCCC
Confidence            2           1223444  35889999999999999999999987543         356679999999999999865

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7.8e-18  Score=144.49  Aligned_cols=155  Identities=21%  Similarity=0.284  Sum_probs=117.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------CccCCHHHHHHHHHHHHhCCCEEEcCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------ARLFTPKIASYYEEYYKSKGVKFVKGT  104 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------~~~~~~~~~~~~~~~l~~~gV~v~~~~  104 (358)
                      +.++|+|||||++|+++|..+++.|.+|+||++.+...               ......++.+.+...+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            46789999999999999999999999999998764310               11134567777888888999999865 


Q ss_pred             eeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC-----ChhhhhcccccccCcEEEe-----ccccCCCCcEEEEc
Q 018320          105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP-----NTSLFEGQLTLEKGGIKVT-----GRLQSSNSSVYAVG  174 (358)
Q Consensus       105 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p-----~~~l~~~~~~~~~g~i~vd-----~~~~t~~~~VyAiG  174 (358)
                      .|+++...++.  ..+.. ....+.++.+++++|..|     +..+++..+++++|+|.+|     +.++|++|+|||+|
T Consensus        83 ~V~~~~~~~~~--~~v~~-~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaG  159 (190)
T d1trba1          83 HINKVDLQNRP--FRLNG-DNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAG  159 (190)
T ss_dssp             CEEEEECSSSS--EEEEE-SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECG
T ss_pred             eeEEEecCCCc--EEEEE-eeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeE
Confidence            57887753332  33443 456899999999999654     4556666677788999998     45689999999999


Q ss_pred             ccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320          175 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       175 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  207 (358)
                      ||+....         .++-.|..+|..||.++
T Consensus       160 Dv~~~~~---------~q~i~Aag~G~~AA~~a  183 (190)
T d1trba1         160 DVMDHIY---------RQAITSAGTGCMAALDA  183 (190)
T ss_dssp             GGGCSSS---------CCHHHHHHHHHHHHHHH
T ss_pred             EecCcce---------eEEEEEeccHHHHHHHH
Confidence            9987543         24567788898888654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.4e-18  Score=147.55  Aligned_cols=154  Identities=19%  Similarity=0.293  Sum_probs=109.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-------------------------------c---CccCCH-----
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------------------------M---ARLFTP-----   83 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-------------------------------l---~~~~~~-----   83 (358)
                      .++|||||++|+++|..+++.|.+|+||++...-                               .   ...++.     
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            6999999999999999999999999999975310                               0   000111     


Q ss_pred             -------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC--------hhh--h
Q 018320           84 -------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN--------TSL--F  146 (358)
Q Consensus        84 -------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~--------~~l--~  146 (358)
                             .+.....+.+++.||+++.+.....    ..... .+. ....++.++.+++++|.+|.        ++.  +
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~----~~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT----SDPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC----SCSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeec----cccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                   1122334567888999987753211    11111 122 23467889999999995544        442  2


Q ss_pred             -hccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018320          147 -EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  212 (358)
Q Consensus       147 -~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  212 (358)
                       +.++++ ++|+|.||+++|||.|+|||+|||+..+.          +...|..+|+.||++|.+...
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~~  216 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKE  216 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCCT
T ss_pred             hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCCC
Confidence             234666 78999999999999999999999987543          466799999999999998653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=2e-17  Score=145.09  Aligned_cols=154  Identities=22%  Similarity=0.241  Sum_probs=110.1

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc---------------------------c-----c--C---ccCCH
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---------------------------C-----M--A---RLFTP   83 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~---------------------------~-----l--~---~~~~~   83 (358)
                      ..+++|||||++|+++|..++++|.+|+||++.+-                           .     .  .   ...+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence            35899999999999999999999999999997531                           0     0  0   00000


Q ss_pred             ------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh------
Q 018320           84 ------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL------  145 (358)
Q Consensus        84 ------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l------  145 (358)
                                  .........+.+.+++++.+...  +..  ..   .+ ..++.++.+|.+++|+|.+|....      
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~~--~~---~~-~~~~~~i~a~~viiAtG~~p~~lp~~~~~~  156 (220)
T d1lvla1          85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VLD--GK---QV-EVDGQRIQCEHLLLATGSSSVELPRRPRTK  156 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EEE--TT---EE-EETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred             HHHhhhheeEEeeeccchhhhhccCceEEEEeeec--ccC--cc---cc-cccceeEeeceeeEcCCCCccccccccccc
Confidence                        01122234556778888876432  221  11   11 235678999999999999886521      


Q ss_pred             ----hhcccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018320          146 ----FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  212 (358)
Q Consensus       146 ----~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  212 (358)
                          ....+++++++|.||++|||+.|+|||+|||+..+.          ++..|..+|+.|+++|+|...
T Consensus       157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~~~  217 (220)
T d1lvla1         157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGKAR  217 (220)
T ss_dssp             SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCCCC
Confidence                111244578999999999999999999999988653          577899999999999998763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.73  E-value=6.5e-18  Score=142.52  Aligned_cols=157  Identities=24%  Similarity=0.301  Sum_probs=112.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCccCCHHHHHH---------HHHHHHhCCCEEEcCCeeeEE
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPKIASY---------YEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~~~~~~~~~~---------~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      +|||||||||++|+|+|..|++++  .+||++++.+.++.....+.....         ....+..+++++..++. ..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Eee
Confidence            789999999999999999999987  479999999876654332222111         12345567888876643 333


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc---------cccccCcEEEecc-c-cCCCCcEEEEccccc
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---------LTLEKGGIKVTGR-L-QSSNSSVYAVGDVAA  178 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~---------~~~~~g~i~vd~~-~-~t~~~~VyAiGD~~~  178 (358)
                      .  ....  .+.+.+++++++|.+|+|+|.+|++.++...         ...+.+.+.++.. + .++.++||++||++.
T Consensus        81 ~--~~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~  156 (186)
T d1fcda1          81 D--PDKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI  156 (186)
T ss_dssp             C--TTTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred             e--eccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence            2  2222  4667889999999999999999998765432         2224556666543 3 468999999999986


Q ss_pred             ccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          179 FPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       179 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      ....       ...+..|.+||+.+|+||..
T Consensus       157 ~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         157 ANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             CTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            5321       24578899999999999875

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.71  E-value=1e-17  Score=146.74  Aligned_cols=156  Identities=22%  Similarity=0.242  Sum_probs=110.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------   79 (358)
                      -.++|||||+.|+.+|..+++.|.+|.++++.+.....                                          
T Consensus         4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~   83 (229)
T d3lada1           4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (229)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            46999999999999999999999999999975321000                                          


Q ss_pred             cCC------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC--CcEEecCeEEEeeCCCCChh-
Q 018320           80 LFT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--GNRLPTDMVVVGIGIRPNTS-  144 (358)
Q Consensus        80 ~~~------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~--g~~i~~D~vi~a~G~~p~~~-  144 (358)
                      .++            ..+...+...++..||+++.+.....    .... ......+  ..++.++.+++++|.+|... 
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~----~~~~-~~~~~~~~~~~~~~~~~~i~atG~~~~~~~  158 (229)
T d3lada1          84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL----AGKK-VEVTAADGSSQVLDTENVILASGSKPVEIP  158 (229)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC----STTC-EEEECTTSCEEEECCSCEEECCCEEECCCT
T ss_pred             eeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc----ccce-eeccccCccceeeecccccccCCccccccc
Confidence            000            01122334556778999987643321    1111 2233332  24678999999999887543 


Q ss_pred             --------hhh-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018320          145 --------LFE-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  212 (358)
Q Consensus       145 --------l~~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  212 (358)
                              ++. .++.+ ++|+|.||++|+|+.|+|||+|||+..+.          ++..|..+|+.||++|+|...
T Consensus       159 ~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~~  226 (229)
T d3lada1         159 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKA  226 (229)
T ss_dssp             EEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCCC
Confidence                    222 23555 68999999999999999999999987653          466799999999999998763

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.70  E-value=5.2e-17  Score=143.29  Aligned_cols=159  Identities=18%  Similarity=0.221  Sum_probs=103.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCCH---
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFTP---   83 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~~---   83 (358)
                      -.++|||+|+.|+++|..+++.|.+|+|||+.+.+...                                   .+..   
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~   86 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHH
Confidence            36999999999999999999999999999987653110                                   0111   


Q ss_pred             ---------HHHHHHHHHHHhCCCEEEcCCeeeEE--------EEcCCCcEEEEEcCCCcEEecCeEEEeeC-CCCChhh
Q 018320           84 ---------KIASYYEEYYKSKGVKFVKGTVLSSF--------DVDSNGKVVAVNLRDGNRLPTDMVVVGIG-IRPNTSL  145 (358)
Q Consensus        84 ---------~~~~~~~~~l~~~gV~v~~~~~v~~i--------~~~~~g~v~~v~~~~g~~i~~D~vi~a~G-~~p~~~l  145 (358)
                               .+...+......++++++.+.....-        ........ .......+...++.++++.| +.|++..
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  165 (229)
T d1ojta1          87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAPTGEKKIVAFKNCIIAAGSRAPNGKL  165 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEEEEEEEEEEEEEEEECCCEEEECGGG
T ss_pred             HHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccccccccceecceEEEEecccCCcccc
Confidence                     11122233455677877754322111        00000000 00001113455666666666 4465542


Q ss_pred             --hhc-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          146 --FEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       146 --~~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                        ++. ++++ ++|+|.||++||||+|+|||+|||+..+.          ++..|+.||+.||.+|+|..
T Consensus       166 ~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         166 ISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             TTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             cchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCCC
Confidence              233 3666 78999999999999999999999987653          46679999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=9.4e-17  Score=128.10  Aligned_cols=97  Identities=22%  Similarity=0.398  Sum_probs=80.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC--cE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KV  117 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g--~v  117 (358)
                      .|++++|||||++|+|+|..|+++|.+|||+++. ++++. +|+++++.+.+.|+++||+|++++.+++++..+++  ..
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~   96 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR   96 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence            5899999999999999999999999999999875 68876 89999999999999999999999999999753332  12


Q ss_pred             EEEEcCC--C---cEEecCeEEEeeC
Q 018320          118 VAVNLRD--G---NRLPTDMVVVGIG  138 (358)
Q Consensus       118 ~~v~~~~--g---~~i~~D~vi~a~G  138 (358)
                      ..+.+.+  +   ..+++|.|++|+|
T Consensus        97 ~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          97 LKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEEECCCCcEEEEECCEEEEEeC
Confidence            2333332  2   2467999999998

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=4.3e-15  Score=125.86  Aligned_cols=156  Identities=16%  Similarity=0.231  Sum_probs=115.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC--cc-----------cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--HC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~--~~-----------l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      .|+|||||++|+++|..++++|.+|++|++..  ++           .+....+.+...+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            58999999999999999999999999999742  11           111123667777777888889999988888777


Q ss_pred             EEcCCC-cEEEEEcCCCcEEecCeEEEeeCCCCChhhh-hccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCc
Q 018320          110 DVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE  186 (358)
Q Consensus       110 ~~~~~g-~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~-~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~  186 (358)
                      ...... ........+..++.++.+++++|..++.... ...+.. ..|.|.+|+.++|+.|+||++|||...+..    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~----  158 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK----  158 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC----
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCcccC----
Confidence            643222 2334455677789999999999976555443 333444 678899999999999999999999986532    


Q ss_pred             ccccccHHHHHHHHHHHHHHH
Q 018320          187 TRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       187 ~~~~~~~~~A~~~g~~aa~~i  207 (358)
                           ....|..+|..+|.++
T Consensus       159 -----~~vva~g~G~~aA~~~  174 (184)
T d1fl2a1         159 -----QIIIATGEGAKASLSA  174 (184)
T ss_dssp             -----CHHHHHHHHHHHHHHH
T ss_pred             -----CcEEEEECcHHHHHHH
Confidence                 3445667777776654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.60  E-value=3.2e-16  Score=130.24  Aligned_cols=126  Identities=13%  Similarity=0.022  Sum_probs=95.7

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEE--cCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHH
Q 018320           11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVI--GGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASY   88 (358)
Q Consensus        11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVI--GgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~   88 (358)
                      +|||.+.++++.+ |.+|+...    +...+++++|+  |||++|+|+|+.|+++|++||++++.+.+++. ++++....
T Consensus        14 pipG~~~~~~~v~-t~~d~l~~----~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-~~~~~~~~   87 (156)
T d1djqa2          14 PIPGADASLPDQL-TPEQVMDG----KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-HFTLEYPN   87 (156)
T ss_dssp             CCTTCCTTSTTEE-CHHHHHHT----CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-HHTTCHHH
T ss_pred             CCCCccCCCCEEE-CHHHHhcC----ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-cchhHHHH
Confidence            5899987655444 66666443    22245566665  99999999999999999999999999988876 78888899


Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhc
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG  148 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  148 (358)
                      +.+.|+++||++++++++.+|+.  ++    +.+.+.....++.++.++|..|+......
T Consensus        88 ~~~~l~~~GV~i~~~~~v~~i~~--~~----v~l~~~~~~~~~~v~~~~g~~~~~~~~~~  141 (156)
T d1djqa2          88 MMRRLHELHVEELGDHFCSRIEP--GR----MEIYNIWGDGSKRTYRGPGVSPRDANTSH  141 (156)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEET--TE----EEEEETTCSCSCCCCCCTTSCSSCCCCCC
T ss_pred             HHHHHhhccceEEeccEEEEecC--cc----eEEEeeeccccceeeeeeEEEecccCCcc
Confidence            99999999999999999999974  22    23333444456777777777777765543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=5.2e-15  Score=129.81  Aligned_cols=155  Identities=23%  Similarity=0.314  Sum_probs=104.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----C-------CHH-------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----F-------TPK-------------------------   84 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~-------~~~-------------------------   84 (358)
                      -.|+|||+|+.|+.+|..+++.|.+|+|+++.+.+....     +       ..+                         
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~   85 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA   85 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchh
Confidence            479999999999999999999999999999876541100     0       000                         


Q ss_pred             ------------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--------cEEecCeE--------EEe
Q 018320           85 ------------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--------NRLPTDMV--------VVG  136 (358)
Q Consensus        85 ------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--------~~i~~D~v--------i~a  136 (358)
                                  +.......+++.+|+++.+..  ++.  +... ..+....+        ..++++.+        +.+
T Consensus        86 ~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~--~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~  160 (233)
T d1v59a1          86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE--DETK-IRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF  160 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES--SSSE-EEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCC
T ss_pred             hhhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe--cCCC-cEEEecccccceeeeeeeccCCeEEEeccccccee
Confidence                        111123334456777765421  121  1111 12222221        23344444        448


Q ss_pred             eCCCCChhhh--hc-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320          137 IGIRPNTSLF--EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       137 ~G~~p~~~l~--~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  211 (358)
                      +|++|+++.+  +. ++++ +.|+|.||++++|+.|+|||+|||+..+.          ++..|..+|+.||++|++..
T Consensus       161 ~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         161 VGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             SCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccCC
Confidence            8999998744  22 3566 67899999999999999999999987653          46679999999999998765

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.5e-14  Score=124.42  Aligned_cols=151  Identities=20%  Similarity=0.273  Sum_probs=110.3

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC----------------------------c--------cCC-H--
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------R--------LFT-P--   83 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~----------------------------~--------~~~-~--   83 (358)
                      .++|||||++|+++|..++++|.+|+|||+++ +..                            .        .++ +  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            58999999999999999999999999999853 100                            0        001 0  


Q ss_pred             ---------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh---------h
Q 018320           84 ---------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS---------L  145 (358)
Q Consensus        84 ---------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~---------l  145 (358)
                               .+...++..+++.||++..........    .    ....++..+.++.+++++|.+|...         +
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~----~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA----K----TLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET----T----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee----e----eecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                     112233445677899988765433221    1    1223677899999999999876543         1


Q ss_pred             hhccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018320          146 FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  212 (358)
Q Consensus       146 ~~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  212 (358)
                      ....+.. +++.|.+|+.++|+.|+||++||+....          .++..+.++|+.+++++++..+
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence            1223445 6788999999999999999999998764          4577889999999999998763

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.53  E-value=7.3e-15  Score=130.00  Aligned_cols=155  Identities=21%  Similarity=0.262  Sum_probs=103.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccCc-----------------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR-----------------------------------------   79 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~~-----------------------------------------   79 (358)
                      -.++|||+|+.|+.+|..+++.|. +|.|++..+...+.                                         
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi~~~   83 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            479999999999999999999885 58898865421000                                         


Q ss_pred             ----cCC-HHH-----------HHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcC------CCcEEecCeEEEe
Q 018320           80 ----LFT-PKI-----------ASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR------DGNRLPTDMVVVG  136 (358)
Q Consensus        80 ----~~~-~~~-----------~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~------~g~~i~~D~vi~a  136 (358)
                          .+| +.+           ...++..|.+ .+++++.+......    +.. ......      ..+.+++|.++++
T Consensus        84 ~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~----~~~-~~~~~~~~~~~~~~e~i~~~~i~ia  158 (240)
T d1feca1          84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQD----NHT-VLVRESADPNSAVLETLDTEYILLA  158 (240)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEE----TTE-EEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             ccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccc----ccc-ccccccccccccceEEEecceEEEe
Confidence                011 111           1111222332 35666655332211    111 111111      1246899999999


Q ss_pred             eCCCCChh-----------hhhccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHH
Q 018320          137 IGIRPNTS-----------LFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV  204 (358)
Q Consensus       137 ~G~~p~~~-----------l~~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa  204 (358)
                      +|.+|...           +....+++ ++|+|.||++||||.|+|||+|||+..+.          ++..|..||+.||
T Consensus       159 ~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~~~A~~eg~~aa  228 (240)
T d1feca1         159 TGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LTPVAINEGAAFV  228 (240)
T ss_dssp             CCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CHHHHHHHHHHHH
T ss_pred             cCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------chhhHHHHHHHHH
Confidence            99988754           22334666 67899999999999999999999987653          4667999999999


Q ss_pred             HHHcCCC
Q 018320          205 AAIMEPD  211 (358)
Q Consensus       205 ~~i~g~~  211 (358)
                      +++++..
T Consensus       229 ~~~~~~~  235 (240)
T d1feca1         229 DTVFANK  235 (240)
T ss_dssp             HHHHSSC
T ss_pred             HHHhCCC
Confidence            9999865

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.6e-14  Score=118.98  Aligned_cols=121  Identities=24%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCc--------------------
Q 018320            7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN--------------------   66 (358)
Q Consensus         7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~--------------------   66 (358)
                      |+.++|||.|+++|++.   .|+  ++..  ...+|+|+|||||++|+|+|..+++.|.+                    
T Consensus         2 Pr~p~IpG~d~~~V~~a---~d~--L~~~--~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~   74 (162)
T d1ps9a2           2 PRTPPIDGIDHPKVLSY---LDV--LRDK--APVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQ   74 (162)
T ss_dssp             ECCCCCBTTTSTTEEEH---HHH--HTSC--CCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCS
T ss_pred             CCCCCCCCCCCCCeEEH---HHH--hhCc--cccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhh
Confidence            77788999999999962   122  2111  12689999999999999999999998864                    


Q ss_pred             -----------------EEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cE
Q 018320           67 -----------------VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NR  127 (358)
Q Consensus        67 -----------------Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~  127 (358)
                                       +++++.....+...++..........++..||++++++++.+++  ++|..  +.. +|  ++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~--~~~-~g~e~~  149 (162)
T d1ps9a2          75 AGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLH--VVI-NGETQV  149 (162)
T ss_dssp             GGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEE--EEE-TTEEEE
T ss_pred             hcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCE--Eec-CCeEEE
Confidence                             34444433333333566667777888999999999999999996  45532  332 34  35


Q ss_pred             EecCeEEEeeCC
Q 018320          128 LPTDMVVVGIGI  139 (358)
Q Consensus       128 i~~D~vi~a~G~  139 (358)
                      ++||.||+|+|.
T Consensus       150 i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         150 LAVDNVVICAGQ  161 (162)
T ss_dssp             ECCSEEEECCCE
T ss_pred             EECCEEEECCCC
Confidence            899999999995

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.49  E-value=9.7e-14  Score=121.76  Aligned_cols=155  Identities=23%  Similarity=0.294  Sum_probs=100.1

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc--------cc-----------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH--------CM-----------------------------------   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~--------~l-----------------------------------   77 (358)
                      -.++|||+|+.|+.+|..+++.|. .|.+++....        +.                                   
T Consensus         4 YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~~~   83 (238)
T d1aoga1           4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFD   83 (238)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCccc
Confidence            469999999999999999999886 5778775311        00                                   


Q ss_pred             CccC--CH-HH-----------HHHHHHHH-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcC------CCcEEecCeEEEe
Q 018320           78 ARLF--TP-KI-----------ASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------DGNRLPTDMVVVG  136 (358)
Q Consensus        78 ~~~~--~~-~~-----------~~~~~~~l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~------~g~~i~~D~vi~a  136 (358)
                      ...+  +. .+           .......+ ...||+++.+..-...   .+ . ......      ....+++|.++++
T Consensus        84 ~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~---~~-~-~~~~~~~~~~~~~~~~~~a~~v~i~  158 (238)
T d1aoga1          84 RTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLES---KN-V-VNVRESADPASAVKERLETEHILLA  158 (238)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEE---TT-E-EEEESSSSTTSCEEEEEEBSCEEEC
T ss_pred             CccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccc---cc-c-ccccccccccccccccccccceeee
Confidence            0000  00 11           11122233 3567888766421111   11 0 111111      1135778888887


Q ss_pred             eCCCCC--------hhhh---hcccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHH
Q 018320          137 IGIRPN--------TSLF---EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA  205 (358)
Q Consensus       137 ~G~~p~--------~~l~---~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~  205 (358)
                      ++.+|.        +..+   ...+..++|+|.||++|||+.|+|||+|||...+.          +...|..+|+.||+
T Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~~A~~eg~~aa~  228 (238)
T d1aoga1         159 SGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTPVAINEAAALVD  228 (238)
T ss_dssp             CCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHHHHHHHHHHHHH
T ss_pred             cccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chhhHHHHHHHHHH
Confidence            665554        3332   23356688999999999999999999999987653          46679999999999


Q ss_pred             HHcCCC
Q 018320          206 AIMEPD  211 (358)
Q Consensus       206 ~i~g~~  211 (358)
                      +|+|..
T Consensus       229 ~i~g~~  234 (238)
T d1aoga1         229 TVFGTT  234 (238)
T ss_dssp             HHHSSS
T ss_pred             HHcCCC
Confidence            999865

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.39  E-value=4e-12  Score=112.31  Aligned_cols=159  Identities=23%  Similarity=0.272  Sum_probs=111.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------c-----------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------L-----------------------------   80 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------------~-----------------------------   80 (358)
                      .|+|||||++|+.+|..|++.|.+|+|+|+.+.+...             .                             
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            6999999999999999999999999999987543100             0                             


Q ss_pred             ------------------------CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320           81 ------------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  136 (358)
Q Consensus        81 ------------------------~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  136 (358)
                                              ...++.+.+.+.+++.||+++++++|+++.. +++.+..+.+++|+++.+|.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEc
Confidence                                    0022445566778889999999999999987 466777788999999999999999


Q ss_pred             eCCCCChh---------hhhcc-ccc---ccCcEEE-----eccccCCCCcEEEEcccccccccccCcccccccHHHHHH
Q 018320          137 IGIRPNTS---------LFEGQ-LTL---EKGGIKV-----TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK  198 (358)
Q Consensus       137 ~G~~p~~~---------l~~~~-~~~---~~g~i~v-----d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~  198 (358)
                      +|......         +++.. ...   ....+.+     ++...+..|++|++|++...... .|.    .....|..
T Consensus       163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~-~gG----~~~~~a~~  237 (251)
T d2i0za1         163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGY-TGG----YNITSALV  237 (251)
T ss_dssp             CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCC-TTT----HHHHHHHH
T ss_pred             cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCC-cch----HHHHHHHH
Confidence            99654322         33321 111   1111111     12223478999999999865433 222    23456788


Q ss_pred             HHHHHHHHH
Q 018320          199 SAKHAVAAI  207 (358)
Q Consensus       199 ~g~~aa~~i  207 (358)
                      .|+.++..+
T Consensus       238 ~G~~a~~~~  246 (251)
T d2i0za1         238 TGRIAGTTA  246 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            899888775

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=7.6e-13  Score=105.55  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=93.0

Q ss_pred             CCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320           10 FGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA   86 (358)
Q Consensus        10 ~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~   86 (358)
                      +++||.+   .++|+++.+- |...+       ++|+|+|||||.+|+|.|..|++...+||+++|++.+-   .++.+.
T Consensus         1 L~ipge~~~~gkgV~yca~c-D~~~~-------~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~   69 (126)
T d1trba2           1 LGLPSEEAFKGRGVSACATS-DGFFY-------RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILI   69 (126)
T ss_dssp             CCCHHHHHTBTTTEESCHHH-HGGGG-------TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHH
T ss_pred             CcCCCHHHhcCCCEEEEEec-chHHh-------CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHH
Confidence            3566643   3688765433 33222       68999999999999999999999999999999998753   478888


Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC------cEEecCeEEEeeC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------NRLPTDMVVVGIG  138 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g------~~i~~D~vi~a~G  138 (358)
                      +.+.+.....+|.+++++.+.++.. ++..+..+++.|.      +++++|-|++++|
T Consensus        70 ~~~~~~~~~~~i~~~~~~~v~~i~G-~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          70 KRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHTSSEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             HHHHHhhcccceeEecceEEEEEEC-CCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            8888888889999999999999997 3445777777542      3599999999987

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.31  E-value=1.8e-11  Score=108.76  Aligned_cols=162  Identities=21%  Similarity=0.225  Sum_probs=110.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC---------------------------cc--------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------RL--------------   80 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~---------------------------~~--------------   80 (358)
                      ..|+|||||++|+.+|..|+++|.+|+|+|+.+.+..                           ..              
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence            5799999999999999999999999999999765410                           00              


Q ss_pred             ----------------------CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC-cEEEEEcCCCcEEecCeEEEee
Q 018320           81 ----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGI  137 (358)
Q Consensus        81 ----------------------~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~vi~a~  137 (358)
                                            -..++.+.+.+.+++.||+++++++|++++..+++ .+..+...++.++.||.||+|+
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAt  164 (253)
T d2gqfa1          85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT  164 (253)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECC
T ss_pred             hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcC
Confidence                                  01234555677778889999999999999875554 2233445678899999999999


Q ss_pred             CCCCChh---------hhhcc-ccc------ccCcEEE---e-ccccC-CCCcEEEEcccccccccccCcccccccHHHH
Q 018320          138 GIRPNTS---------LFEGQ-LTL------EKGGIKV---T-GRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSA  196 (358)
Q Consensus       138 G~~p~~~---------l~~~~-~~~------~~g~i~v---d-~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A  196 (358)
                      |-.+...         +++.. ...      ..|++.+   | ..|++ ..|++|.+|.+.......-|-     -.+.|
T Consensus       165 GG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~-----n~~~a  239 (253)
T d2gqfa1         165 GGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGY-----NFQWA  239 (253)
T ss_dssp             CCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTH-----HHHHH
T ss_pred             CcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCE-----ehhhh
Confidence            9664332         22211 111      1234432   3 24666 689999999877654332221     23457


Q ss_pred             HHHHHHHHHHHc
Q 018320          197 RKSAKHAVAAIM  208 (358)
Q Consensus       197 ~~~g~~aa~~i~  208 (358)
                      ...|..|+..|.
T Consensus       240 ~~s~~~~~~~~~  251 (253)
T d2gqfa1         240 WSSAYACALSIS  251 (253)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHh
Confidence            778888888774

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=9e-12  Score=99.17  Aligned_cols=117  Identities=25%  Similarity=0.359  Sum_probs=87.4

Q ss_pred             ccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320            8 EEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK   84 (358)
Q Consensus         8 ~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~   84 (358)
                      +.+++||.+   ..+|+++.+. |+..+       ++|+|+|||||..++|.|..|++...+|||++|++.+..   ++.
T Consensus         2 R~L~ipge~~~~gkGV~yca~c-D~~~~-------~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~   70 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHC-DGPLF-------KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQV   70 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHH-HGGGG-------BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHH
T ss_pred             CcCCCCCHHHhcCCCEEEEEec-Chhhc-------CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---ccc
Confidence            456788875   3688875432 33222       689999999999999999999999999999999987533   343


Q ss_pred             HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeCC
Q 018320           85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGI  139 (358)
Q Consensus        85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~  139 (358)
                      +.+   +.....+|++++++++.++.. +++.+..+++.+   |  +++++|.+++++|.
T Consensus        71 ~~~---~~~~~~~I~v~~~~~v~~i~G-~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          71 LQD---KLRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             HHH---HHHTCTTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             ccc---ccccccceeEEcCcceEEEEc-cccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            322   223345799999999999987 344567777643   4  46999999999983

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.8e-11  Score=102.04  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSSF  109 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i  109 (358)
                      .+|+|+|||||++|+++|..|+++|++|||+|+.+.+...          ....++.+.+.+.+++.||++++++.|++ 
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-  120 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-  120 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-
Confidence            6899999999999999999999999999999998766321          12245677888888999999999987632 


Q ss_pred             EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                    + ....+|.||+|+|..|+..
T Consensus       121 --------------~-~~~~~d~vilAtG~~~~~~  140 (179)
T d1ps9a3         121 --------------D-QLQAFDETILASGIPNRAL  140 (179)
T ss_dssp             --------------S-SSCCSSEEEECCCEECCTT
T ss_pred             --------------c-ccccceeEEEeecCCCccc
Confidence                          1 1346899999999887653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.24  E-value=5.6e-12  Score=107.06  Aligned_cols=149  Identities=19%  Similarity=0.220  Sum_probs=97.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  110 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~  110 (358)
                      .+|||+|||||++|+++|..|+++|. +|+|+++.+.+...        .............+.+.+..+.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            47999999999999999999999998 59999999876431        1344455555556667778888776553211


Q ss_pred             EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-c--cccc-ccCcEEEe-ccccCCCCcEEEEcccccccccc
Q 018320          111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-G--QLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKL  183 (358)
Q Consensus       111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~--~~~~-~~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~  183 (358)
                               ....+..+..+|.+++++|..+...+.  . .  .... ..+....+ ..++|+.+.||+.||++...+  
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~--  151 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN--  151 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC--
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc--
Confidence                     111222345688999999965333221  1 1  1111 22333333 568899999999999987543  


Q ss_pred             cCcccccccHHHHHHHHHHHHHHH
Q 018320          184 LGETRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       184 ~g~~~~~~~~~~A~~~g~~aa~~i  207 (358)
                              .+..|..+|+.++..+
T Consensus       152 --------~av~a~~~g~~~a~~v  167 (196)
T d1gtea4         152 --------TTVESVNDGKQASWYI  167 (196)
T ss_dssp             --------CHHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHhhhehhH
Confidence                    2344666777666554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.24  E-value=7.5e-12  Score=111.84  Aligned_cols=102  Identities=9%  Similarity=0.075  Sum_probs=64.7

Q ss_pred             CCEEEcCCeeeEEEEcCCCc----EEEEEc-----CCCcEEecCeEEEeeCCCCChh-------------hhhccccc-c
Q 018320           97 GVKFVKGTVLSSFDVDSNGK----VVAVNL-----RDGNRLPTDMVVVGIGIRPNTS-------------LFEGQLTL-E  153 (358)
Q Consensus        97 gV~v~~~~~v~~i~~~~~g~----v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-------------l~~~~~~~-~  153 (358)
                      +.++++++.|++|+...++.    ...+..     .+++.+++|.||++++..+-..             .+...... .
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            56889999999997643321    111221     2346789999999987321111             00000000 1


Q ss_pred             cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      ++.+.+++.++|+.|+||++||+...+           .+..|+.+|+.||+.|+.
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence            123345567889999999999998643           366799999999998864

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.24  E-value=6e-13  Score=106.19  Aligned_cols=96  Identities=17%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEEc-----------cC-----CC-CceEEEEe--eCCeEEEEEEeCCC-H-HHHH
Q 018320          218 YLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------NF-----SG-TTFGAYWV--NKGRLVGSFLEGGT-K-EEYE  276 (358)
Q Consensus       218 ~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~~-----~~-~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~  276 (358)
                      .+.++..++||+.++++|+++.++...|           +.     .. .+|.|+..  ++++|||+|++|++ + +.++
T Consensus         2 ~~gt~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~   81 (126)
T d1nhpa3           2 VQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANIN   81 (126)
T ss_dssp             BCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHH
T ss_pred             cccCeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHH
Confidence            4677889999999999999987542111           11     11 23666554  57999999999964 4 4578


Q ss_pred             HHHHHHHcCCCcccHHHHhhcCCcccCCcCCCCCCCCccc
Q 018320          277 AIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVD  316 (358)
Q Consensus       277 ~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~  316 (358)
                      .++.||+.++|++||.+++   +.|+|+|+++-++.+..+
T Consensus        82 ~~~~ai~~~~t~~dL~~~~---~~yhPt~se~~~~l~~aA  118 (126)
T d1nhpa3          82 AISLAIQAKMTIEDLAYAD---FFFQPAFDKPWNIINTAA  118 (126)
T ss_dssp             HHHHHHHTTCBHHHHHTCC---CCCCTTTCCSSCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHhcCc---ccCCCCCchhHHHHHHHH
Confidence            8999999999999999999   999999999866554443

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.21  E-value=3.8e-11  Score=107.05  Aligned_cols=137  Identities=20%  Similarity=0.315  Sum_probs=86.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------cCC-H----
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LFT-P----   83 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~~~-~----   83 (358)
                      .++|||||+.|+.+|..++++|.+|.|+|+.. +...                                  .++ +    
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            58999999999999999999999999999753 1100                                  011 1    


Q ss_pred             -------HHHHHHHHHHHhCCCEEEcCCe-ee-----EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC-----Chhh
Q 018320           84 -------KIASYYEEYYKSKGVKFVKGTV-LS-----SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP-----NTSL  145 (358)
Q Consensus        84 -------~~~~~~~~~l~~~gV~v~~~~~-v~-----~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p-----~~~l  145 (358)
                             .+...+...|++.||+++.+.. ..     .+...++.........+++++.+|.+++|||.+|     +.+.
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence                   1223345667889999997642 11     1111011100111112346799999999999999     3433


Q ss_pred             hh---cccccccCcEEEeccccCCCCcEEEEccccccc
Q 018320          146 FE---GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP  180 (358)
Q Consensus       146 ~~---~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~  180 (358)
                      +.   ..+..+++.+.+|+..+|++.++|++||++...
T Consensus       162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence            22   224446788999999999999999999998754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.17  E-value=4.1e-11  Score=108.85  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=65.0

Q ss_pred             HHhCCCEEEcCCeeeEEEEcCCCcEEEEEc--CCCcEEecCeEEEeeCCC--------CChhhh-hcccc---cccCcEE
Q 018320           93 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDGNRLPTDMVVVGIGIR--------PNTSLF-EGQLT---LEKGGIK  158 (358)
Q Consensus        93 l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~--~~g~~i~~D~vi~a~G~~--------p~~~l~-~~~~~---~~~g~i~  158 (358)
                      +++.|++++++++|++|+.++++....+..  .++++++||.||+|++..        |..... ...+.   .......
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~~  324 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQH  324 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccccc
Confidence            466799999999999999855553333333  345689999999998631        221110 00000   0000111


Q ss_pred             EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320          159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  207 (358)
Q Consensus       159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  207 (358)
                      ..+.+.+...+||++||++..+.         ..+..|+..|..||.+|
T Consensus       325 ~~~~~~~~~g~v~~aGd~~~~~~---------~~~~~a~~sG~~aA~~i  364 (370)
T d2iida1         325 FSDPLTASQGRIYFAGEYTAQAH---------GWIDSTIKSGLRAARDV  364 (370)
T ss_dssp             HHHHHHCCBTTEEECSGGGSSSS---------SCHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCEEEecccccCCC---------cccHHHHHHHHHHHHHH
Confidence            12233344567999999886543         23567999999999887

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=9e-11  Score=93.63  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             CCCCCCCC-------CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320           10 FGLSGSDA-------ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT   82 (358)
Q Consensus        10 ~~ipG~~~-------~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~   82 (358)
                      +++||..-       ++|.++-+-+.+..+      .++|+|+|||||..++|.|..|++...+||+++|++.+-.   +
T Consensus         2 l~~pGe~E~~~~f~gkGVsyca~CDg~a~~------frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~   72 (130)
T d1vdca2           2 LSFVGSGEVLGGFWNRGISACAVCDGAAPI------FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---S   72 (130)
T ss_dssp             CCCBTCSSSSSCCBTTTEESCHHHHTTSGG------GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---C
T ss_pred             CCCCccccccccccCCcEEEEEEecCchHH------hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---c
Confidence            57888542       688876544322111      1689999999999999999999999999999999987643   4


Q ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC-CcEEEEEcC---CC--cEEecCeEEEee
Q 018320           83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLR---DG--NRLPTDMVVVGI  137 (358)
Q Consensus        83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-g~v~~v~~~---~g--~~i~~D~vi~a~  137 (358)
                      +.+.   ++.+...+|++++++++.++..++. +.+..+++.   ++  +++++|.|++++
T Consensus        73 ~~~~---~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          73 KIMQ---QRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             HHHH---HHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             hhhh---hccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            4433   3334556799999999999987432 346556543   23  579999999875

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.09  E-value=6.2e-10  Score=101.98  Aligned_cols=164  Identities=20%  Similarity=0.198  Sum_probs=105.3

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------------------------------cC--
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LF--   81 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------------------------------~~--   81 (358)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+.+.....                                      ..  
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            36999999999999999999999999999986432000                                      00  


Q ss_pred             -----------------------------------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC
Q 018320           82 -----------------------------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  114 (358)
Q Consensus        82 -----------------------------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~  114 (358)
                                                                     ...+...+.+.+.++|+++++++.++++..+++
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~  183 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS  183 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccccccccc
Confidence                                                           112334455566778999999999999987677


Q ss_pred             CcEEEEEcC--CC--cEEecCeEEEeeCCCC-Chhhhh---------------------------cc---cccccCc---
Q 018320          115 GKVVAVNLR--DG--NRLPTDMVVVGIGIRP-NTSLFE---------------------------GQ---LTLEKGG---  156 (358)
Q Consensus       115 g~v~~v~~~--~g--~~i~~D~vi~a~G~~p-~~~l~~---------------------------~~---~~~~~g~---  156 (358)
                      |++..+...  ++  ..+.++.||+|+|--. |.++..                           .+   ..++-++   
T Consensus       184 G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~  263 (322)
T d1d4ca2         184 GKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVI  263 (322)
T ss_dssp             SCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECC
T ss_pred             ccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceEEe
Confidence            777666543  22  2489999999998332 222111                           00   0112222   


Q ss_pred             ----EEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHc
Q 018320          157 ----IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       157 ----i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~  208 (358)
                          -.+++..+|.+|++||+|+|+...   .|..+.- ..+..+.--|++|+.+..
T Consensus       264 ~~~~~~~~~~~~~~v~Glya~Ge~~~gv---hG~nrlg~~~~~e~~v~g~~ag~~aa  317 (322)
T d1d4ca2         264 DTKAEVKSEKTGKPITGLYAAGEVTGGV---HGANRLGGNAISDIVTYGRIAGASAA  317 (322)
T ss_dssp             CTTCEEEBTTTSSEEEEEEECGGGBCSS---STTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEECCCCCEeCceEEchhhcCCc---cccccchhhHHHHHHHHHHHHHHHHH
Confidence                234555667899999999998532   2222211 124455555777666653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=4e-10  Score=98.44  Aligned_cols=126  Identities=17%  Similarity=0.242  Sum_probs=84.2

Q ss_pred             ccCCCCCCCCCCeEEecCHHHHHHHHHHHh----------cCCCCcEEEEcCcHHHHHHHHHHHhC--------------
Q 018320            8 EEFGLSGSDAENVCYLRDLADANRLVNVMK----------SCSGGNAVVIGGGYIGMECAASLVIN--------------   63 (358)
Q Consensus         8 ~~~~ipG~~~~~v~~l~~~~da~~i~~~l~----------~~~~~~vvVIGgG~~gle~A~~L~~~--------------   63 (358)
                      +.++|||.+++|||.      |.++.....          ...+++|+|||+|.+|++||..|.+.              
T Consensus         2 R~L~IPGedl~gV~~------A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l   75 (225)
T d1cjca1           2 QALDIPGEELPGVFS------ARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL   75 (225)
T ss_dssp             CCCCCTTTTSTTEEE------HHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHH
T ss_pred             CCCCCCCCCCCCcEe------HHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHH
Confidence            468999999999994      333333221          12479999999999999999999883              


Q ss_pred             ------C-CcEEEEeeCCcccCccCCHHHHHH-----------------------------------HHHHHH-------
Q 018320           64 ------K-INVTMVFPEAHCMARLFTPKIASY-----------------------------------YEEYYK-------   94 (358)
Q Consensus        64 ------g-~~Vtlv~~~~~~l~~~~~~~~~~~-----------------------------------~~~~l~-------   94 (358)
                            | .+|+++.|+...-..+-.+++.+.                                   +.+.++       
T Consensus        76 ~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (225)
T d1cjca1          76 GALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEE  155 (225)
T ss_dssp             HHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccc
Confidence                  4 479999987653222112222211                                   111111       


Q ss_pred             -------hCCCEEEcCCeeeEEEEcCCC-cEEEEEcC---------------CC--cEEecCeEEEeeCC
Q 018320           95 -------SKGVKFVKGTVLSSFDVDSNG-KVVAVNLR---------------DG--NRLPTDMVVVGIGI  139 (358)
Q Consensus        95 -------~~gV~v~~~~~v~~i~~~~~g-~v~~v~~~---------------~g--~~i~~D~vi~a~G~  139 (358)
                             .+++.+++.....++..++++ ++..+++.               .|  .+++||+||.|+|+
T Consensus       156 ~~~~~~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         156 AARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             HHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cccccccccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence                   246899999999999886554 56555432               12  25899999999995

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=1.8e-09  Score=88.47  Aligned_cols=94  Identities=27%  Similarity=0.408  Sum_probs=67.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      .+++|+|||||.+|+|+|..+.++|++ |++++|.+..-.. ..+..    ...+...++++++...++++.. +++.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~~~----~~~a~~~~~~~~~~~~~~ei~~-~~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEE----VELAKEEKCEFLPFLSPRKVIV-KGGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHH----HHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cchhh----eeecccccceeEeccccEEEEe-cCCceE
Confidence            357899999999999999999999875 8899987764332 23322    2334567899999988888875 344433


Q ss_pred             EEEc------CCC---------cEEecCeEEEeeCC
Q 018320          119 AVNL------RDG---------NRLPTDMVVVGIGI  139 (358)
Q Consensus       119 ~v~~------~~g---------~~i~~D~vi~a~G~  139 (358)
                      .+..      .+|         .+++||.||+|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            3322      122         35899999999983

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.04  E-value=1.5e-10  Score=103.12  Aligned_cols=103  Identities=13%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChhhhhcc-------c-cc-ccCc---EEE
Q 018320           94 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQ-------L-TL-EKGG---IKV  159 (358)
Q Consensus        94 ~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~~~-------~-~~-~~g~---i~v  159 (358)
                      ++.|+++++++.|++|+.++++. ..+...+|  ++++||.||+|+|......++...       + .. ..+.   +..
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~~~-~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  308 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDGGW-RLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAA  308 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC--CC-EEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTHHHHHHH
T ss_pred             HHhhcccccCCEEEEEEEeCCeE-EEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCcccceec
Confidence            33488999999999998754442 22222333  468999999999853222232211       0 00 1111   111


Q ss_pred             eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          160 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       160 d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      .+...++.|++|++||.....           ....++.+|+.+|+.|+
T Consensus       309 ~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         309 IDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             ccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            223346899999999986643           24568889999999875

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.03  E-value=4.7e-10  Score=97.40  Aligned_cols=102  Identities=16%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC----------Chhhhh-cccccccCcEEEe----c
Q 018320           97 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP----------NTSLFE-GQLTLEKGGIKVT----G  161 (358)
Q Consensus        97 gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p----------~~~l~~-~~~~~~~g~i~vd----~  161 (358)
                      +..+..++.+..++..+++  ..+++.||+.+.+|.+++++....          ...-.. ..+. ..+...++    +
T Consensus       224 ~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~~  300 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEYD  300 (347)
T ss_dssp             CTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHHH
T ss_pred             ccccccccccccccccCcc--EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccchh
Confidence            4567888889998874433  458889999999999999876321          110000 0000 11111222    3


Q ss_pred             cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320          162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  209 (358)
Q Consensus       162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  209 (358)
                      .++++.++||++||++....+        ..+..|+.+|+.+|+.|++
T Consensus       301 ~~~~~~~~v~~~GD~~~~~~~--------~~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         301 QLRAPVGRVYFTGEHTSEHYN--------GYVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHCCBTTEEECSGGGCSSCT--------TSHHHHHHHHHHHHHHHHH
T ss_pred             hcccccCCEEEEEccccCcCC--------CHHHHHHHHHHHHHHHHHH
Confidence            567888999999999875443        3466788999999998864

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.99  E-value=4e-09  Score=95.83  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=82.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------c--CCHHH
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L--FTPKI   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~--~~~~~   85 (358)
                      -+|+|||+|++|+-+|..|.+.|.+|+++|+.+.+...                                  .  -.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            47999999999999999999999999999997654110                                  0  01457


Q ss_pred             HHHHHHHHHhCCC--EEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC--CCChh
Q 018320           86 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS  144 (358)
Q Consensus        86 ~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~  144 (358)
                      .+++++..++.++  .++++++|++++.+++...-.|++.++.++.+|.||+|+|.  .|...
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p  150 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTG  150 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTH
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCC
Confidence            7778888888888  59999999999865555556788899999999999999995  44443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.92  E-value=9.9e-09  Score=92.93  Aligned_cols=163  Identities=17%  Similarity=0.187  Sum_probs=102.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------------------------------cCCHH
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFTPK   84 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~~~   84 (358)
                      .|+|||+|.+|+-+|..|++.|.+|+|||+.+.....                                      ..+++
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   97 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPA   97 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccchH
Confidence            7999999999999999999999999999986532100                                      00111


Q ss_pred             -------------------------------------------------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC
Q 018320           85 -------------------------------------------------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  115 (358)
Q Consensus        85 -------------------------------------------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g  115 (358)
                                                                       +...+.+.+.+.|+++++++.++++..+++|
T Consensus        98 lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G  177 (308)
T d1y0pa2          98 LVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG  177 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc
Confidence                                                             2223344566789999999999998876778


Q ss_pred             cEEEEEcCC--C--cEEecCeEEEeeCC-CCChhhhhc-------------------cccc--ccCcEEEe-cccc----
Q 018320          116 KVVAVNLRD--G--NRLPTDMVVVGIGI-RPNTSLFEG-------------------QLTL--EKGGIKVT-GRLQ----  164 (358)
Q Consensus       116 ~v~~v~~~~--g--~~i~~D~vi~a~G~-~p~~~l~~~-------------------~~~~--~~g~i~vd-~~~~----  164 (358)
                      ++..+...+  +  ..+.++.||+|+|- ..|.++...                   ++.+  .-|.-..| +++|    
T Consensus       178 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdg~~ma~~aGa~l~~me~vq~~p~  257 (308)
T d1y0pa2         178 TVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIDTKAE  257 (308)
T ss_dssp             CEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTCCEECTTCBCTTCE
T ss_pred             ccccccccccccceeEeecCeEEEccCcccccHHHHHHhccchhhhcccCCCcccCHHHHHHHHcCCCccCccceecccc
Confidence            887776543  3  25889999999983 334332210                   0111  12333333 3332    


Q ss_pred             ------CCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHc
Q 018320          165 ------SSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       165 ------t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~  208 (358)
                            +..|++|++|.|+....   |..+.- ..+....--|++|+.+..
T Consensus       258 ~~~~~~~~~~gl~a~G~~~~g~h---g~nrlg~~~~~~~~~~g~~ag~~a~  305 (308)
T d1y0pa2         258 VMNAKKQVIPGLYGAGEVTGGVH---GANRLGGNAISDIITFGRLAGEEAA  305 (308)
T ss_dssp             EECTTSCEEEEEEECSTTEESSS---TTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCCcccceeehhhhhcccc---CcCCCchhhHHHHHHHHHHHHHHHH
Confidence                  24689999999986432   221111 123344455676666543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.87  E-value=2.1e-08  Score=91.46  Aligned_cols=97  Identities=18%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------------------------------cCC--
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFT--   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~--   82 (358)
                      .|+|||+|.+|+.+|..+++.|.+|.|+|+.+..-..                                      ..+  
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~~  100 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIK  100 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccchh
Confidence            5999999999999999999999999999986432000                                      001  


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC
Q 018320           83 -----------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  115 (358)
Q Consensus        83 -----------------------------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g  115 (358)
                                                                     ..+...+.+.+++.|+++++++.++++..++++
T Consensus       101 lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g  180 (317)
T d1qo8a2         101 LVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH  180 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS
T ss_pred             HHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc
Confidence                                                           123444566677889999999999998776788


Q ss_pred             cEEEEEcC--CCc--EEecCeEEEeeCC
Q 018320          116 KVVAVNLR--DGN--RLPTDMVVVGIGI  139 (358)
Q Consensus       116 ~v~~v~~~--~g~--~i~~D~vi~a~G~  139 (358)
                      ++..+...  +++  .+.++.||+|+|-
T Consensus       181 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         181 SVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             BEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             cceeeEeecccceEEEEeccceEEeccc
Confidence            88766554  342  4789999999994

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.86  E-value=1e-08  Score=94.26  Aligned_cols=160  Identities=17%  Similarity=0.121  Sum_probs=97.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCc---------------------------------------
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR---------------------------------------   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~---------------------------------------   79 (358)
                      -|+|+|||||++|+.+|..|++.|  .+|+++|+.+.+...                                       
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            489999999999999999998876  599999998764200                                       


Q ss_pred             ------------------------cC--CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-CCCc---EEe
Q 018320           80 ------------------------LF--TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN---RLP  129 (358)
Q Consensus        80 ------------------------~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~---~i~  129 (358)
                                              .+  .+++.+.+....+..+..++++++|++++.+++...+.+.. ..++   +..
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~  163 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI  163 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence                                    00  13556666666667788999999999999844332222222 2222   456


Q ss_pred             cCeEEEeeCCC--CChhhh-----------hc-cccc-ccCcEEEe---ccccCCCCcEEEEcccccccccccCcccccc
Q 018320          130 TDMVVVGIGIR--PNTSLF-----------EG-QLTL-EKGGIKVT---GRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  191 (358)
Q Consensus       130 ~D~vi~a~G~~--p~~~l~-----------~~-~~~~-~~g~i~vd---~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~  191 (358)
                      +|.||+|+|..  |+...+           +. .... .++.-..+   ..+....|.+..+|=....           .
T Consensus       164 ~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v-----------~  232 (335)
T d2gv8a1         164 FDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------V  232 (335)
T ss_dssp             ESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------C
T ss_pred             eeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEE-----------e
Confidence            99999999953  443211           00 0011 11111111   1112256777777743332           1


Q ss_pred             cHHHHHHHHHHHHHHHcCCC
Q 018320          192 HVDSARKSAKHAVAAIMEPD  211 (358)
Q Consensus       192 ~~~~A~~~g~~aa~~i~g~~  211 (358)
                      .......|+..++.-+.|..
T Consensus       233 ~~~~~e~Qa~~~a~~~~g~~  252 (335)
T d2gv8a1         233 PFPTSQAQAAFLARVWSGRL  252 (335)
T ss_dssp             HHHHHHHHHHHHHHHHTTSS
T ss_pred             cCCchHHHHHHHHHHHcCCc
Confidence            23345678888888777654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=3e-09  Score=92.13  Aligned_cols=62  Identities=27%  Similarity=0.362  Sum_probs=46.4

Q ss_pred             ccCCCCCCCCCCeEEecCHHHHHHHHHHHh----------cCCCCcEEEEcCcHHHHHHHHHHH----------------
Q 018320            8 EEFGLSGSDAENVCYLRDLADANRLVNVMK----------SCSGGNAVVIGGGYIGMECAASLV----------------   61 (358)
Q Consensus         8 ~~~~ipG~~~~~v~~l~~~~da~~i~~~l~----------~~~~~~vvVIGgG~~gle~A~~L~----------------   61 (358)
                      +.++|||.|++||+.      |..+.....          ...+++|+|||+|.+|++||..|.                
T Consensus         2 R~L~IPGedl~gV~~------A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l   75 (216)
T d1lqta1           2 RMLNIPGEDLPGSIA------AVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHAL   75 (216)
T ss_dssp             CCCCCTTTTSTTEEE------HHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHH
T ss_pred             CCCCCCCCCCCCcEe------HHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHH
Confidence            468999999999994      333333222          114799999999999999999887                


Q ss_pred             ----hCCC-cEEEEeeCCc
Q 018320           62 ----INKI-NVTMVFPEAH   75 (358)
Q Consensus        62 ----~~g~-~Vtlv~~~~~   75 (358)
                          +.|. +|+++.|+..
T Consensus        76 ~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          76 ESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             HHHTTCCCCEEEEECSSCG
T ss_pred             HHHhhcCCceEEEEEECCh
Confidence                4555 6999987643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.80  E-value=3.4e-08  Score=86.69  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=76.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----CCHHHHHHH-------------------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTPKIASYY-------------------------   89 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~~~~~~~~~-------------------------   89 (358)
                      ..+||+|||+|+.|+.+|..|++.|.+|+|+|+.+.+....     +.+.....+                         
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            46899999999999999999999999999999876543210     122211111                         


Q ss_pred             -------------------HHHH-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320           90 -------------------EEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus        90 -------------------~~~l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                                         ...+ ...++.++.++.+++++.+.++  ..+++.||+++.+|.+|.|.|..+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccccc
Confidence                               1111 2357889999999999875444  468889999999999999999766443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.75  E-value=1.1e-07  Score=86.86  Aligned_cols=117  Identities=15%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCc--EEecCeEEEeeCCCCCh------------h---h-hh
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPNT------------S---L-FE  147 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~~p~~------------~---l-~~  147 (358)
                      +.+..++.||+++.++.+.++.. +++++..+..   .+|+  .+.++.||+|||--...            +   . +.
T Consensus       164 l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~  242 (336)
T d2bs2a2         164 VANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALE  242 (336)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred             HHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhh
Confidence            34445567999999999988876 4565544433   4564  47899999999843211            1   1 11


Q ss_pred             cc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCccc-ccccHHHHHHHHHHHHHHHc
Q 018320          148 GQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETR-RLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       148 ~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~-~~~~~~~A~~~g~~aa~~i~  208 (358)
                      .+ ..+ +-++|.+|..++|+.|++|++||+......  +..+ --..+..+...++.+++.++
T Consensus       243 ~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~--~~~~~~~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         243 TGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMH--GFNRLGGNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             TSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSS--TTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccceeechhhcccCCcceecccccccccc--ccccchhhccchhhhhcchhHHHHH
Confidence            22 223 557899999999999999999998764321  1111 01234455556666665544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.5e-08  Score=90.63  Aligned_cols=106  Identities=15%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC--------CChh-hhhcccc-c-ccCcE-EEe
Q 018320           93 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR--------PNTS-LFEGQLT-L-EKGGI-KVT  160 (358)
Q Consensus        93 l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~--------p~~~-l~~~~~~-~-~~g~i-~vd  160 (358)
                      +++.|+++++++.|++|+.++++  ..+++.||+++++|.||++++..        |... .....+. . ..+.. ...
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~~--v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~  294 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTREN--VLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYG  294 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSSS--EEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHG
T ss_pred             HHHcCCeEEecCcceEEEecCCe--EEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchhh
Confidence            45568899999999999874443  35888999999999999998632        1111 1111111 0 11111 112


Q ss_pred             ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      ..+.....+|+.+|+.......        .....|+.+|+.+|..++
T Consensus       295 ~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~  334 (383)
T d2v5za1         295 RVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREIL  334 (383)
T ss_dssp             GGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHH
Confidence            2334455679999987654322        345668889998888765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.71  E-value=4.5e-08  Score=88.16  Aligned_cols=53  Identities=28%  Similarity=0.453  Sum_probs=43.0

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ..+.+.+++.|++++.+++|++++. +++++..|++.+| +++||.||+|+|.-.
T Consensus       152 ~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         152 QLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhH
Confidence            3345566788999999999999987 5677777887766 799999999999653

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.70  E-value=6.6e-09  Score=82.31  Aligned_cols=86  Identities=12%  Similarity=0.118  Sum_probs=63.1

Q ss_pred             CCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH-
Q 018320          217 DYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-  275 (358)
Q Consensus       217 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-  275 (358)
                      +.+|+.+  +.+..++++|+++.++...+                  ..+..+|.++..  ++|+|||++++|+++.++ 
T Consensus         2 r~IP~~v--ft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI   79 (128)
T d1ojta3           2 RVIPGVA--YTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMI   79 (128)
T ss_dssp             CCCCEEE--CSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHH
T ss_pred             CcCCEee--cCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHH
Confidence            3578654  56788999999876532111                  112234777654  579999999999987775 


Q ss_pred             HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          276 EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       276 ~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      +.++.||++++|++||.++.   ..| |++++.
T Consensus        80 ~~~~lai~~~~t~~~l~~~i---~~h-PT~sE~  108 (128)
T d1ojta3          80 GEVCLAIEMGCDAADIGKTI---HPH-PTLGES  108 (128)
T ss_dssp             HHHHHHHHTTCBHHHHHTSC---CCS-SSSTTH
T ss_pred             HHHHHHHHcCCCHHHHhhCc---CcC-CCHHHH
Confidence            67899999999999999887   444 887765

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=6.6e-09  Score=81.77  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH
Q 018320          216 FDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  275 (358)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~  275 (358)
                      |+.+|+.+  +.+..++++|+++.++...+                  ..+..+|.|+..  ++|+|||++++|+++.++
T Consensus         1 Y~~iP~~v--ft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~el   78 (123)
T d1v59a3           1 YNNIPSVM--YSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEM   78 (123)
T ss_dssp             TTSCCEEE--CSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEEe--ecCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHH
Confidence            45678643  56788999999876532111                  112245777654  579999999999987775


Q ss_pred             -HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          276 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       276 -~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                       +.++.||++++|++||.++.    ..+|.+++.
T Consensus        79 I~~~alai~~~~t~~~l~~~i----~~hPT~sE~  108 (123)
T d1v59a3          79 IAEAGLALEYGASAEDVARVC----HAHPTLSEA  108 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSC----CCTTCTTHH
T ss_pred             HHHHHHHHHcCCcHHHHHhcc----cCCCcHHHH
Confidence             67899999999999998866    335666543

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.62  E-value=9.2e-09  Score=80.91  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH
Q 018320          216 FDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  275 (358)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~  275 (358)
                      |+.+|+.  -+.+..++++|+++.++...|                  ..+..+|.|+..  ++|+|+|++++|+++.++
T Consensus         1 Y~~iP~~--vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~el   78 (123)
T d1dxla3           1 YDKVPGV--VYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGEL   78 (123)
T ss_dssp             TTSCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCEE--eecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHH
Confidence            4567864  345788999999876432111                  112345777665  579999999999987764


Q ss_pred             -HHHHHHHHcCCCcccHHHHhhcCCcccCCcCC
Q 018320          276 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  307 (358)
Q Consensus       276 -~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~  307 (358)
                       +.++.||++++|++||.++.   . ..|.+++
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i---~-~hPT~sE  107 (123)
T d1dxla3          79 IHEAAIALQYDASSEDIARVC---H-AHPTMSE  107 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSC---C-CSSCTTH
T ss_pred             HHHHHHHHHcCCcHHHHhhCC---C-CCCCHHH
Confidence             67899999999999999876   2 3466654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.62  E-value=7e-08  Score=85.40  Aligned_cols=52  Identities=21%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ..+.+.+++.|++++.+++|++|+.+  +....|++.+| ++.||.||+|+|.-.
T Consensus       155 ~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         155 KAYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             hHHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCe-EEEcCEEEECCCccH
Confidence            33456677899999999999999864  33457877776 799999999999654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.61  E-value=1.2e-07  Score=84.25  Aligned_cols=53  Identities=23%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      ...+.+.+++.|++++++++|++++..+ +.+ .|++.+| ++.||.||+|+|.-.
T Consensus       153 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         153 IRAYRELAEARGAKVLTHTRVEDFDISP-DSV-KIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEECS-SCE-EEEETTE-EEEEEEEEECCGGGH
T ss_pred             ccccccccccccccccCCcEEEEEEEEC-CEE-EEEECCc-EEEcCEEEECCCCcc
Confidence            3344566778999999999999999744 443 5777776 699999999999643

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.60  E-value=1.1e-08  Score=79.44  Aligned_cols=84  Identities=14%  Similarity=0.090  Sum_probs=60.1

Q ss_pred             CCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH-HH
Q 018320          219 LPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EA  277 (358)
Q Consensus       219 ~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~  277 (358)
                      +|+.  -+.+..++++|+++.++...|                  ..+..+|.|+..  ++++|||++++|+++.++ +.
T Consensus         2 vP~~--vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~   79 (115)
T d1ebda3           2 IPAV--VFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAE   79 (115)
T ss_dssp             CCEE--ECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHH
T ss_pred             cCeE--ecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHH
Confidence            5653  346778999999886532111                  112345777654  579999999999987775 67


Q ss_pred             HHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          278 IAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       278 ~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++.+|++++|++||.++.   .. .|.++++
T Consensus        80 ~~~ai~~~~t~~~l~~~i---~~-hPT~sE~  106 (115)
T d1ebda3          80 LGLAIEAGMTAEDIALTI---HA-HPTLGEI  106 (115)
T ss_dssp             HHHHHHHTCBHHHHHHSC---CC-TTSSTHH
T ss_pred             HHHHHHcCCCHHHHhhCC---CC-CCCHHHH
Confidence            899999999999999877   33 3766643

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.60  E-value=8.6e-09  Score=81.07  Aligned_cols=85  Identities=14%  Similarity=0.074  Sum_probs=61.0

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HH
Q 018320          218 YLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YE  276 (358)
Q Consensus       218 ~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~  276 (358)
                      .+|++  .+.+..++++|+++.++...|                  ..+..+|.++..  ++|+|||++++|+++.+ ++
T Consensus         3 ~iP~v--vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~   80 (123)
T d1lvla3           3 AIAAV--CFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELST   80 (123)
T ss_dssp             CCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHH
T ss_pred             CCCEE--EeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHH
Confidence            56764  346778999999986532111                  112234766554  57999999999998766 56


Q ss_pred             HHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          277 AIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       277 ~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      .++.||++++|++||.++.   ..| |.++++
T Consensus        81 ~~~lai~~~~t~~~l~~~i---~~h-PT~sE~  108 (123)
T d1lvla3          81 AFAQSLEMGACLEDVAGTI---HAH-PTLGEA  108 (123)
T ss_dssp             HHHHHHHHTCBHHHHHTSC---CCT-TCTTHH
T ss_pred             HHHHHHHcCCCHHHHhcCC---CCC-CCHHHH
Confidence            7899999999999999876   333 777764

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.58  E-value=9.3e-09  Score=81.00  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH
Q 018320          216 FDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  275 (358)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~  275 (358)
                      |+.+|+.+  +.+..++++|+++.++...+                  ..+..+|.|+..  ++|+|||++++|+++.++
T Consensus         1 Y~~vP~~v--ft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~el   78 (124)
T d3lada3           1 YDLIPAVI--YTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAEL   78 (124)
T ss_dssp             TTCCCEEE--CSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCcCCeEe--cCcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHH
Confidence            45678643  46778999999876432111                  112235777665  579999999999987775


Q ss_pred             -HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          276 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       276 -~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                       +.++.+|++++|++||.++.    ..+|.+++.
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  108 (124)
T d3lada3          79 VQQGAIAMEFGTSAEDLGMMV----FAHPALSEA  108 (124)
T ss_dssp             HHHHHHHHHHTCBHHHHHTSC----CCSSCSHHH
T ss_pred             HHHHHHHHHcCCCHHHHHhCC----ccCCCHHHH
Confidence             67899999999999999866    334666554

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.1e-08  Score=77.89  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEE-------------c-------cCCCCceEEEEe--eCCeEEEEEEeCCCHH
Q 018320          216 FDYLPFFYSRVFTLSWQFYGDNVGEVVHY-------------G-------NFSGTTFGAYWV--NKGRLVGSFLEGGTKE  273 (358)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-------------g-------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~  273 (358)
                      |+.+|+.+  +....++++|+++.++...             .       ..+..+|.++..  ++++|||++++|+.+.
T Consensus         1 Y~~vP~~v--ft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~   78 (115)
T d3grsa3           1 YNNIPTVV--FSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCD   78 (115)
T ss_dssp             CTTCCEEE--CCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCEEe--cCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHH
Confidence            45678653  4567799999997653211             0       011234766554  5899999999999988


Q ss_pred             HH-HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          274 EY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       274 ~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++ ..++.||++++|++||.++.    ..+|.++++
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  110 (115)
T d3grsa3          79 EMLQGFAVAVKMGATKADFDNTV----AIHPTSSEE  110 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSC----CCSSCSGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHhhCc----cCCCCHHHH
Confidence            75 56799999999999998866    455666655

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.57  E-value=5.3e-07  Score=68.17  Aligned_cols=79  Identities=15%  Similarity=0.304  Sum_probs=65.8

Q ss_pred             CCCCCCeEEEEecCceEEEeecccc--eEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHH
Q 018320          215 KFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLA  292 (358)
Q Consensus       215 ~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~  292 (358)
                      .+..+|+||+.+|+++++++|...+  +.+..|+.+..+|..++.++|+++|+..+| .+.++.....+|..+..+. ..
T Consensus         3 ~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~vn-~~~~~~~~r~li~~~~~~~-~~   80 (103)
T d1q1ra3           3 RDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVN-RPVEFNQSKQIITDRLPVE-PN   80 (103)
T ss_dssp             CCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCCCC-HH
T ss_pred             CCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEEeC-CHHHHHHHHHHHHCCCCcC-HH
Confidence            4567999999999999999998654  667778777777988999999999999999 5778888889999988774 55


Q ss_pred             HHh
Q 018320          293 ELE  295 (358)
Q Consensus       293 ~l~  295 (358)
                      .|.
T Consensus        81 ~L~   83 (103)
T d1q1ra3          81 LLG   83 (103)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            554

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.56  E-value=6.3e-07  Score=66.99  Aligned_cols=82  Identities=21%  Similarity=0.326  Sum_probs=65.3

Q ss_pred             CCCCCCCeEEEEecCceEEEeecccc--eEEE-EccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCccc
Q 018320          214 DKFDYLPFFYSRVFTLSWQFYGDNVG--EVVH-YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED  290 (358)
Q Consensus       214 ~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~-~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~d  290 (358)
                      .+|..+|+||+.+|+++++++|....  +.+. .+..+...|..++.++|+++|+..+| .+.++.....+|+.+.++. 
T Consensus         3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~vn-~~~~~~~~rrli~~~~~~~-   80 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVN-NARDFAPLRRLLAVGAKPD-   80 (97)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCCCC-
T ss_pred             CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEEeC-CHHHHHHHHHHHHCCCCCC-
Confidence            47889999999999999999998664  2333 34445556888999999999999999 4778888899999998874 


Q ss_pred             HHHHhhc
Q 018320          291 LAELETQ  297 (358)
Q Consensus       291 l~~l~~~  297 (358)
                      ...|.++
T Consensus        81 ~~~LaD~   87 (97)
T d1d7ya3          81 RAALADP   87 (97)
T ss_dssp             HHHHHSS
T ss_pred             HHHhcCC
Confidence            5665543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.56  E-value=1.6e-07  Score=81.28  Aligned_cols=97  Identities=15%  Similarity=0.245  Sum_probs=70.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC-cc---------cC-------ccCC------HHHHHHHHHHHHh-CC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HC---------MA-------RLFT------PKIASYYEEYYKS-KG   97 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~-~~---------l~-------~~~~------~~~~~~~~~~l~~-~g   97 (358)
                      -.|+|||||+.|+|+|..+++.|.+|.||+... .+         ..       +..+      ......+++.+.+ .+
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~n   82 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   82 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcC
Confidence            369999999999999999999999999998641 11         00       0001      1123334444443 48


Q ss_pred             CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320           98 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus        98 V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                      ++++.+ .|.++.. +++++..|.+.+|.++.+..||++||.-
T Consensus        83 L~i~q~-~V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          83 LHLFQA-TATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             EEEEEC-CEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHhc-cceeeEe-cccceeeEEeccccEEEEeEEEEccCcc
Confidence            888865 5666654 5677888999999999999999999953

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.9e-08  Score=78.13  Aligned_cols=87  Identities=10%  Similarity=0.060  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEE-------------cc-------CCCCceEEEEe--eCCeEEEEEEeCCCHH
Q 018320          216 FDYLPFFYSRVFTLSWQFYGDNVGEVVHY-------------GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKE  273 (358)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-------------g~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~  273 (358)
                      |+.+|+.+  +.+..++.+|+++.++...             ..       ....++.++..  ++++|||++++|+++.
T Consensus         1 Y~~vP~~v--ft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~   78 (115)
T d1gesa3           1 YSNIPTVV--FSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD   78 (115)
T ss_dssp             CSSCCEEE--CCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCeEe--cCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHH
Confidence            45678653  4567799999987543211             10       11224666554  5899999999999988


Q ss_pred             HH-HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          274 EY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       274 ~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      ++ ..++.||++++|++||.++.    ..+|.++++
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  110 (115)
T d1gesa3          79 EMLQGFAVALKMGATKKDFDNTV----AIHPTAAEE  110 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSC----CCSSCSGGG
T ss_pred             HHHHHHHHHHHcCCcHHHHhcCc----ccCCcHHHH
Confidence            75 66799999999999999865    445666665

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.55  E-value=2.2e-08  Score=78.17  Aligned_cols=87  Identities=13%  Similarity=0.160  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEE-------------cc-----------CCCCceEEEEe--eCCeEEEEEEeC
Q 018320          216 FDYLPFFYSRVFTLSWQFYGDNVGEVVHY-------------GN-----------FSGTTFGAYWV--NKGRLVGSFLEG  269 (358)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-------------g~-----------~~~~~~~~~~~--~~g~ilGa~~vg  269 (358)
                      |+.+|+.+  +.+..++++|+++.++...             ..           ....+|.++..  ++++|||++++|
T Consensus         1 Y~~vP~~v--fT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG   78 (119)
T d1onfa3           1 YKLIPTVI--FSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG   78 (119)
T ss_dssp             CSSCCEEE--CCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCcCCeEe--ccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeC
Confidence            45688754  4567799999987543211             00           01123555443  789999999999


Q ss_pred             CCHHHH-HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          270 GTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       270 ~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      +.+.++ ..++.||++++|++||.++.    ..+|.++++
T Consensus        79 ~~A~ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  114 (119)
T d1onfa3          79 LNADEIVQGFAVALKMNATKKDFDETI----PIHPTAAEE  114 (119)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSC----CCTTCSTTH
T ss_pred             CCHHHHHHHHHHHHHcCCcHHHHhhCc----ccCCCHHHH
Confidence            998875 56799999999999999876    345666654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.52  E-value=9.6e-07  Score=77.44  Aligned_cols=156  Identities=17%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccCcc----CCHHH-------------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARL----FTPKI-------------------------------   85 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~~~----~~~~~-------------------------------   85 (358)
                      -+|+|||||+.|+-+|..|++.|. +|+|+|+.+.+....    +.+..                               
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            479999999999999999999996 899999987653210    11111                               


Q ss_pred             -------------------------HHHHHH--HHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC----cEEecCeEE
Q 018320           86 -------------------------ASYYEE--YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVV  134 (358)
Q Consensus        86 -------------------------~~~~~~--~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi  134 (358)
                                               ...+..  .....++.+.++++++.+..++++  ..+.+.++    +++.+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~~~ad~vi  159 (288)
T d3c96a1          82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR--VLIGARDGHGKPQALGADVLV  159 (288)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE--EEEEEEETTSCEEEEEESEEE
T ss_pred             EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc--EEEEEEcCCCCeEEEeeceee
Confidence                                     011111  123357889999999988864444  24555544    478999999


Q ss_pred             EeeCCCCChhhhhcccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320          135 VGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  208 (358)
Q Consensus       135 ~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  208 (358)
                      .|-|.+....-.......    .............+..+||++....+..|+     ....|+..+...+..+.
T Consensus       160 ~ADG~~S~vr~~~~~~~~----~~~~~~~~~~~~~~~~~gda~h~~~p~~g~-----G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         160 GADGIHSAVRAHLHPDQR----PLRDPLPHWGRGRITLLGDAAHLMYPMGAN-----GASQAILDGIELAAALA  224 (288)
T ss_dssp             ECCCTTCHHHHHHCTTCC----CCCCCCSCCCBTTEEECTHHHHCCCSSTTC-----THHHHHHHHHHHHHHHH
T ss_pred             ccCCccceeeeeeccccc----cccccccccccCcceecccccceeCCcccc-----chhhhhhhHHHHHHHHh
Confidence            999987544321110000    000011223456799999999876654442     24456777777666654

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=2.1e-08  Score=78.22  Aligned_cols=85  Identities=14%  Similarity=0.031  Sum_probs=60.6

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHHH-H
Q 018320          218 YLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-E  276 (358)
Q Consensus       218 ~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~  276 (358)
                      .+|+.+  +.+..++++|+++.++...|                  ..+..+|.|+..  ++|+|||++++|+++.++ +
T Consensus         3 ~iP~~v--ft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~   80 (118)
T d1xdia2           3 TVAATV--FTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELIL   80 (118)
T ss_dssp             GCEEEE--CSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred             CCCEEe--cCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHH
Confidence            466543  56788999999876432111                  111234777665  579999999999987764 6


Q ss_pred             HHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          277 AIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       277 ~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      .++.||++++|++||.++.   .. +|.+++.
T Consensus        81 ~~~~ai~~~~t~~~l~~~i---~~-hPT~sE~  108 (118)
T d1xdia2          81 PIAVAVQNRITVNELAQTL---AV-YPSLSGS  108 (118)
T ss_dssp             HHHHHHHHTCBHHHHHTSB---CC-SSSTHHH
T ss_pred             HHHHHHHcCCCHHHHhhCC---CC-CCCHHHH
Confidence            7899999999999999877   44 3766553

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.49  E-value=2e-06  Score=80.20  Aligned_cols=161  Identities=20%  Similarity=0.277  Sum_probs=107.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh------CCCcEEEEeeCCcccCcc-----CC----------------------------
Q 018320           42 GNAVVIGGGYIGMECAASLVI------NKINVTMVFPEAHCMARL-----FT----------------------------   82 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~------~g~~Vtlv~~~~~~l~~~-----~~----------------------------   82 (358)
                      -.|+|||||++|+-+|..|++      .|.+|.|+|++..+..+.     ++                            
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~  112 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  112 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEE
Confidence            379999999999999999997      899999999975542110     11                            


Q ss_pred             ----------------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC----------
Q 018320           83 ----------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD----------  124 (358)
Q Consensus        83 ----------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~----------  124 (358)
                                                  ......+.+..+..|+++..+..+.++..++++.+..+...+          
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  192 (380)
T d2gmha1         113 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  192 (380)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             EeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeeccccccccccccccc
Confidence                                        123444566677889999999999998876667655544322          


Q ss_pred             -----CcEEecCeEEEeeCCCCChh--hhhcc-ccc---ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccH
Q 018320          125 -----GNRLPTDMVVVGIGIRPNTS--LFEGQ-LTL---EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  193 (358)
Q Consensus       125 -----g~~i~~D~vi~a~G~~p~~~--l~~~~-~~~---~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~  193 (358)
                           +....++..+++.|.+....  ++... +..   ..+++  ...-+...+++..+||++..-++.++     .-+
T Consensus       193 ~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~--~sip~l~~~G~lLVGDAAG~vnP~~g-----~GI  265 (380)
T d2gmha1         193 TTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGF--QSIPKLTFPGGLLIGCSPGFMNVPKI-----KGT  265 (380)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGG--GGCCCCEETTEEECTTTTCCCBTTTT-----BCH
T ss_pred             ccccccccccccEEEEeeeCCCcchHHHHhhhhhcccccccccc--ccccccccCCeeEEeccccccchhhc-----CCe
Confidence                 12355788888988765432  22211 111   11111  00012246899999999998776554     457


Q ss_pred             HHHHHHHHHHHHHHcC
Q 018320          194 DSARKSAKHAVAAIME  209 (358)
Q Consensus       194 ~~A~~~g~~aa~~i~g  209 (358)
                      ..|+..|+.||+.+..
T Consensus       266 ~~Am~SG~lAAeai~~  281 (380)
T d2gmha1         266 HTAMKSGTLAAESIFN  281 (380)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eeeeccHHHHHHHHHH
Confidence            7889999999988763

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=3.7e-07  Score=77.93  Aligned_cols=52  Identities=13%  Similarity=0.169  Sum_probs=38.9

Q ss_pred             HHHHHHhCCCEEEcCCeeeEEEEcCC-CcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320           89 YEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        89 ~~~~l~~~gV~v~~~~~v~~i~~~~~-g~v~~v~~~~g~~i~~D~vi~a~G~~p  141 (358)
                      +.+.+++.|++|+++++|++|..+++ +++..+ +.+|+++.||.||....+-|
T Consensus       242 l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         242 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhcc
Confidence            34566778999999999999976444 455444 46889999999987654444

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.47  E-value=5.1e-08  Score=77.06  Aligned_cols=86  Identities=9%  Similarity=0.077  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecCceEEEeecccceEEEEc------------------cCCC-CceEEEEe--eCCeEEEEEEeCCCHHHH
Q 018320          217 DYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSG-TTFGAYWV--NKGRLVGSFLEGGTKEEY  275 (358)
Q Consensus       217 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~-~~~~~~~~--~~g~ilGa~~vg~~~~~~  275 (358)
                      ..+|+.+  +.+..++.+|+++.++...+                  .... .++.++..  ++|+|||++++|+++.++
T Consensus         2 ~~VP~aV--fT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~El   79 (128)
T d1feca3           2 TKVACAV--FSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEI   79 (128)
T ss_dssp             SSCCEEE--CCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred             CCCCEEe--cCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHHH
Confidence            4577754  45677999999985431111                  0112 23555554  689999999999998775


Q ss_pred             -HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          276 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       276 -~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                       ..++.||++++|++||.++.    ...|.+++.
T Consensus        80 I~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  109 (128)
T d1feca3          80 IQSVAICLKMGAKISDFYNTI----GVHPTSAEE  109 (128)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSC----CCSSCSGGG
T ss_pred             HHHHHHHHHcCCcHHHHhcCc----CCCCcHHHH
Confidence             66899999999999998876    345777776

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.40  E-value=7.4e-08  Score=77.33  Aligned_cols=85  Identities=14%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             CCCeEEEEecCceEEEeecccceEEEEcc----------------------------------CCCCceEEEEe--eCCe
Q 018320          218 YLPFFYSRVFTLSWQFYGDNVGEVVHYGN----------------------------------FSGTTFGAYWV--NKGR  261 (358)
Q Consensus       218 ~~p~~~~~~~~~~~~~~G~~~~~~~~~g~----------------------------------~~~~~~~~~~~--~~g~  261 (358)
                      .+|+++  +.+..++++|+++.++...|.                                  .+..+|.|+..  ++|+
T Consensus         3 ~iP~vv--fT~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~   80 (140)
T d1mo9a3           3 NYPDFL--HTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRK   80 (140)
T ss_dssp             SCCEEE--ESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCB
T ss_pred             CCCcEe--ccCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCc
Confidence            467654  467789999999865422110                                  01123667665  6899


Q ss_pred             EEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhhcCCccc-CCcCC
Q 018320          262 LVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFA-LAVSQ  307 (358)
Q Consensus       262 ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~ya-p~~~~  307 (358)
                      |||++++|+++.++ +.++.||++++|++||.++.   ..|. |.|++
T Consensus        81 IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~---~i~~hPT~~~  125 (140)
T d1mo9a3          81 VLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMD---ELFLNPTHFI  125 (140)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSC---CCSSCSCCHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcC---CCCCCCChHH
Confidence            99999999987764 67899999999999998876   4554 55543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.40  E-value=1.5e-07  Score=71.82  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=56.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      ++|+|+|||+|.+|+++|..|++.+.+|+++.+.+.....               ..++...  ..+.+++.  ++.  .
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~--~~~--~   89 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDP--TTR--E   89 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEET--TTT--E
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEec--CCC--E
Confidence            6899999999999999999999999998888776554321               1233333  34666764  332  4


Q ss_pred             EEcCCCcEEe-cCeEEEe
Q 018320          120 VNLRDGNRLP-TDMVVVG  136 (358)
Q Consensus       120 v~~~~g~~i~-~D~vi~a  136 (358)
                      +.+.||+.+. .|.||+|
T Consensus        90 v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          90 IYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEETTTEEECCCSEEEEC
T ss_pred             EEEcCCCEEeCCCEEEEC
Confidence            7889998876 7999986

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.40  E-value=3.2e-07  Score=79.12  Aligned_cols=127  Identities=16%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCc---------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320           43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR---------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  111 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~  111 (358)
                      +|+|||+|++|+.+|..|++.  |.+|||+++.+.+...         .....+.......+.+.|++++.++.|..   
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---   79 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence            899999999999999999775  7799999999876321         11223445566677888999998876521   


Q ss_pred             cCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEecccc-CCCCcEEEEccccccc
Q 018320          112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFP  180 (358)
Q Consensus       112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~~~-t~~~~VyAiGD~~~~~  180 (358)
                        +-..  ..+    .-.+|.+++|+|..+........... ....+......+ .+.+..+..|+.....
T Consensus        80 --~~~~--~~l----~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  142 (230)
T d1cjca2          80 --DVTV--QEL----QDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP  142 (230)
T ss_dssp             --TBCH--HHH----HHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred             --cccH--HHH----HhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCc
Confidence              1000  001    12589999999986543322211111 111111111111 2467788888765543

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=1.1e-07  Score=75.69  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEecCceEEEeecccceEEEE-----------cc---------CCC-CceE-EEEe--eCCeEEEEEEeCCC
Q 018320          216 FDYLPFFYSRVFTLSWQFYGDNVGEVVHY-----------GN---------FSG-TTFG-AYWV--NKGRLVGSFLEGGT  271 (358)
Q Consensus       216 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-----------g~---------~~~-~~~~-~~~~--~~g~ilGa~~vg~~  271 (358)
                      |+.+|+.+  +.+..++++|+++.++...           ..         ... .++. ++..  ++|+|||++++|++
T Consensus         1 Y~~VP~~v--fT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~   78 (133)
T d1h6va3           1 YDNVPTTV--FTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPN   78 (133)
T ss_dssp             CSSCCEEE--CSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTT
T ss_pred             CCCCCEEe--cCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCC
Confidence            45688744  4677899999987543211           10         111 2233 3333  58999999999999


Q ss_pred             HHHH-HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320          272 KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  308 (358)
Q Consensus       272 ~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~  308 (358)
                      +.++ ..++.||++++|++||.++.    ..+|.++++
T Consensus        79 A~ElI~~~~~ai~~~~t~~~l~~~i----~~hPT~sE~  112 (133)
T d1h6va3          79 AGEVTQGFAAALKCGLTKQQLDSTI----GIHPVCAEI  112 (133)
T ss_dssp             HHHHHHHHHHHHHTTCBHHHHHHSC----CCTTCGGGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhhcc----ccCCCHHHH
Confidence            8875 56799999999999999876    445666554

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=2.5e-06  Score=76.67  Aligned_cols=86  Identities=16%  Similarity=0.270  Sum_probs=57.1

Q ss_pred             HHhCCCEEEcCCeeeEEEEcCC------CcEEEEEc---CCCc--EEecCeEEEeeCCCCCh------------h---hh
Q 018320           93 YKSKGVKFVKGTVLSSFDVDSN------GKVVAVNL---RDGN--RLPTDMVVVGIGIRPNT------------S---LF  146 (358)
Q Consensus        93 l~~~gV~v~~~~~v~~i~~~~~------g~v~~v~~---~~g~--~i~~D~vi~a~G~~p~~------------~---l~  146 (358)
                      +++.+++++.++.+.++..+++      +++..+..   .+++  .+.++.||+|+|-....            +   ++
T Consensus       148 ~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA  227 (305)
T d1chua2         148 LNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMA  227 (305)
T ss_dssp             HHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHH
T ss_pred             HhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEeec
Confidence            3445778888888887765322      24555543   2343  47899999999843211            1   11


Q ss_pred             -hccccc-ccCcEEEeccccCCCCcEEEEccccc
Q 018320          147 -EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAA  178 (358)
Q Consensus       147 -~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~  178 (358)
                       +.+..+ +-++|.+|.+.+|+.|++||+|+++.
T Consensus       228 ~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         228 WRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             cccceeeEecceeEECCcccCCCCCceecccEEE
Confidence             223444 55789999999999999999999754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.33  E-value=4.2e-08  Score=85.40  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccC----------CHHHHHHHHHHHHh---CCCEEEcCCee
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKS---KGVKFVKGTVL  106 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~---~gV~v~~~~~v  106 (358)
                      .+++|+|||||++|+.+|..|+++|.+|+++++.+++.....          -..........+.+   .++...     
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  122 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQ-----  122 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCE-----
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeee-----
Confidence            578999999999999999999999999999999887643210          01122222333332   222211     


Q ss_pred             eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320          107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                        +.. +..   .+...+..++.+|.||+|||..+.....
T Consensus       123 --~~~-~~~---~~~~~~~~~~~~d~vviAtG~~~~~~~~  156 (233)
T d1djqa3         123 --LAL-GQK---PMTADDVLQYGADKVIIATGASECTLWN  156 (233)
T ss_dssp             --EEC-SCC---CCCHHHHHTSCCSEEEECCCEECCHHHH
T ss_pred             --eec-ccc---cccchhhhhhccceeeeccCCCcccccc
Confidence              111 111   1122233467899999999998876543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.27  E-value=1.6e-06  Score=77.07  Aligned_cols=127  Identities=15%  Similarity=0.139  Sum_probs=80.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC------ccCC----------------------------------
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------RLFT----------------------------------   82 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~------~~~~----------------------------------   82 (358)
                      +|+|||||++|+-+|..|++.|.+|+|+|+.+....      ..+.                                  
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~   83 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR   83 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccc
Confidence            799999999999999999999999999999753210      0011                                  


Q ss_pred             -------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCC
Q 018320           83 -------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRP  141 (358)
Q Consensus        83 -------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p  141 (358)
                                         ..+.+.+.+.+++.+..++...........++..+......+|+  ++.+|+||.|.|.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1          84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             cccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCC
Confidence                               12344455566677777777766655543233333222234554  578999999999775


Q ss_pred             ChhhhhcccccccCcEEEeccccCCCCcEEEEccccccccc
Q 018320          142 NTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK  182 (358)
Q Consensus       142 ~~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~  182 (358)
                      ..--.   +..          ........+.+||+.....+
T Consensus       164 ~vR~~---i~~----------~~~~~~~~~~~~~~~~~~~p  191 (292)
T d1k0ia1         164 ISRQS---IPA----------ERMQHGRLFLAGDAAHIVPP  191 (292)
T ss_dssp             STGGG---SCG----------GGSEETTEEECGGGTEECCG
T ss_pred             cccce---eee----------ccccccccccceeeeeecCC
Confidence            43211   110          11124567888998765443

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=9.7e-06  Score=73.16  Aligned_cols=86  Identities=19%  Similarity=0.337  Sum_probs=58.8

Q ss_pred             HHhCCCEEEcCCeeeEEEEcCCCcEEEEE---cCCCc--EEecCeEEEeeCCC-----CCh--h--------hh-hcccc
Q 018320           93 YKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGIR-----PNT--S--------LF-EGQLT  151 (358)
Q Consensus        93 l~~~gV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~vi~a~G~~-----p~~--~--------l~-~~~~~  151 (358)
                      .+..+|+++.++.++++.. +++++..+.   ..+|+  .+.++.||+|||--     ..+  .        ++ +.+..
T Consensus       145 ~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~  223 (311)
T d1kf6a2         145 LQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVP  223 (311)
T ss_dssp             TTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCC
T ss_pred             HccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcccc
Confidence            3345899999999999876 457766554   34664  46799999999842     111  1        11 12233


Q ss_pred             c-ccCcEEEeccccCCCCcEEEEcccccc
Q 018320          152 L-EKGGIKVTGRLQSSNSSVYAVGDVAAF  179 (358)
Q Consensus       152 ~-~~g~i~vd~~~~t~~~~VyAiGD~~~~  179 (358)
                      + +-.+|.++....++.+++|+.+++..-
T Consensus       224 l~dme~iq~~p~~~~~~~~~~~~~~~~~~  252 (311)
T d1kf6a2         224 LRDMGGIETDQNCETRIKGLFAVGECSSV  252 (311)
T ss_dssp             EESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             eeecccccccccchhcccCCCcCcceeee
Confidence            3 335677888888889999999998763

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=1.5e-07  Score=85.32  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~   76 (358)
                      ...+|+|||+|+.|+.+|..|+++  |.+|+++|+.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            457899999999999999999964  9999999998765

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.12  E-value=1.6e-06  Score=74.38  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++|+|+|||+|.+|+++|..+++.+.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            368999999999999999999999999998887664

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=3e-05  Score=70.23  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .|+|||+|+.|+-+|..+++.|.+|+|+++.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            69999999999999999999999999999854

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=2.6e-06  Score=73.12  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCC-------CcEEEEeeCCcccCc---------cCCHHHHHHHHHHHHhCCCEEEcCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINK-------INVTMVFPEAHCMAR---------LFTPKIASYYEEYYKSKGVKFVKGT  104 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g-------~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~~l~~~gV~v~~~~  104 (358)
                      |.+|+|||+|++|+.+|..|+++|       .+|||+|+.+.+...         ....++.......+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            679999999999999999999987       579999998865321         1223445556667788899999987


Q ss_pred             eeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320          105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  143 (358)
Q Consensus       105 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~  143 (358)
                      .+....          .+ +.-...+|.+++++|..+..
T Consensus        82 ~v~~~~----------~~-~~~~~~~~~v~~atGa~~~~  109 (239)
T d1lqta2          82 VVGEHV----------QP-GELSERYDAVIYAVGAQSRG  109 (239)
T ss_dssp             CBTTTB----------CH-HHHHHHSSEEEECCCCCEEC
T ss_pred             Eecccc----------ch-hhhhccccceeeecCCCccc
Confidence            652110          00 11123589999999976543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.86  E-value=7.1e-05  Score=65.93  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHh-CCCcEEEEeeCCcccCcc-----------C---C----------------------
Q 018320           40 SGGNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCMARL-----------F---T----------------------   82 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~~~~~l~~~-----------~---~----------------------   82 (358)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++|+.+.+....           +   .                      
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            45679999999999999999987 599999999987542110           0   0                      


Q ss_pred             --HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc--------------CCCcEEecCeEEEeeCCCC
Q 018320           83 --PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--------------RDGNRLPTDMVVVGIGIRP  141 (358)
Q Consensus        83 --~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~--------------~~g~~i~~D~vi~a~G~~p  141 (358)
                        ......+.+.++..++.+..++.+..+.. .++++..+..              .++.++.++.++.++|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence              01223334445566788888888877665 3344433321              1235688999999999654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.5e-05  Score=70.66  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=35.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      +..+|+|||||..|+-+|..|++.|.+|+|+|+.+++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            457899999999999999999999999999999887643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.58  E-value=2.8e-05  Score=70.20  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      .|+|+|||||++|+-+|..|++.|.+|+|+|+.+++...
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            589999999999999999999999999999999987653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.53  E-value=0.0011  Score=59.56  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=28.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHh----CCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVI----NKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~----~g~~Vtlv~~~~   74 (358)
                      -.|+|||+|+.|+-+|..+++    .|.+|+|+++.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            379999999999999988864    699999999854

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.52  E-value=3.6e-05  Score=66.04  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..++|+|||||.+|+-+|..|+++|.+|+|+|+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999853

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00011  Score=65.55  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=34.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR   79 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~   79 (358)
                      +++|||||++|+-+|..|++.|.+|+|+|+++++...
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            6899999999999999999999999999999887664

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.04  E-value=0.00019  Score=64.42  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHH-----hCCCcEEEEeeCCccc
Q 018320           42 GNAVVIGGGYIGMECAASLV-----INKINVTMVFPEAHCM   77 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~-----~~g~~Vtlv~~~~~~l   77 (358)
                      -.|+|||||++|+-+|..|+     +.|.+|+|+|+.+.+.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            46999999999999999996     5799999999987654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00027  Score=56.25  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|+++|||||.+|++-|..|.+.|.+||++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999999653

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.96  E-value=0.00051  Score=54.18  Aligned_cols=109  Identities=15%  Similarity=0.109  Sum_probs=70.0

Q ss_pred             cCHHHHHHHHHHHhcCC-CCcEEEEc------CcHHHHH----HHHHHHhCCC--cEEEEeeCCcccC-ccCCHHHHHHH
Q 018320           24 RDLADANRLVNVMKSCS-GGNAVVIG------GGYIGME----CAASLVINKI--NVTMVFPEAHCMA-RLFTPKIASYY   89 (358)
Q Consensus        24 ~~~~da~~i~~~l~~~~-~~~vvVIG------gG~~gle----~A~~L~~~g~--~Vtlv~~~~~~l~-~~~~~~~~~~~   89 (358)
                      ....++.+|++.+++.+ +.++|+.-      .+..-.|    ++..|+++|.  +|.++...+.... ..+.+.+.+.+
T Consensus        15 ~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~   94 (141)
T d1fcda2          15 KAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLY   94 (141)
T ss_dssp             SCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHH
Confidence            34467899999998764 55776652      2234444    4455566665  5777765543211 11234456667


Q ss_pred             HHHHHhCCCEEEcCCe--eeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320           90 EEYYKSKGVKFVKGTV--LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  136 (358)
Q Consensus        90 ~~~l~~~gV~v~~~~~--v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a  136 (358)
                      .+.++++||+++++..  +.+++.  ..+  .+++.+|+++++|++.+.
T Consensus        95 ~~~~~~~~I~~~~~~~~~~v~vd~--~~~--~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          95 GFGTENAMIEWHPGPDSAVVKVDG--GEM--MVETAFGDEFKADVINLI  139 (141)
T ss_dssp             CSTTSSCSEEEECSSTTCEEEEEE--TTT--EEEETTCCEEECSEEEEC
T ss_pred             HHHHHhcCceeeecCCceEEeecC--CcE--EEEeCCCcEEeeeEEEeC
Confidence            7777889999998764  556654  232  467889999999999875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.89  E-value=0.0018  Score=48.65  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .+|+++|||+|.+|..-|..|.+.|++|+++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            6899999999999999999999999999998764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0011  Score=48.14  Aligned_cols=81  Identities=20%  Similarity=0.319  Sum_probs=55.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      .++|+++|+|.|-+|+.+|..|.+.|.+|++.+..+..-..           +.+ +.++.++++.              
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~--------------   56 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGS--------------   56 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESB--------------
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeecc--------------
Confidence            36899999999999999999999999999999875532111           111 2234433221              


Q ss_pred             EEEcCCCcEEecCeEEEeeCCCCChhhhhc
Q 018320          119 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG  148 (358)
Q Consensus       119 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  148 (358)
                         +.+...-.+|.+|+++|..|+.+++..
T Consensus        57 ---~~~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          57 ---LNDEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             ---CCHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             ---cchhhhccCCEEEECCCCCCCCHHHHH
Confidence               001112357999999999998887654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.53  E-value=0.00087  Score=54.02  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .|+|+|||+|.+|..+|..|.+.|.+||+++|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999999853

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0012  Score=54.67  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      -|+|.|||+|.+|..+|..+++.|++|+++++.+..+.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            37999999999999999999999999999998765443

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.31  E-value=0.0017  Score=58.78  Aligned_cols=33  Identities=30%  Similarity=0.231  Sum_probs=31.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .|||||+|+.|+-+|..|++.|.+|.|+|++.+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            589999999999999999999999999999754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.27  E-value=0.0014  Score=53.19  Aligned_cols=33  Identities=27%  Similarity=0.166  Sum_probs=30.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      |++.|||+|..|.-+|..|++.|++|++++|.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789999999999999999999999999998753

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.21  E-value=0.0012  Score=54.34  Aligned_cols=37  Identities=22%  Similarity=0.175  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      +-++|.|||+|.+|..+|..++..|++|+++++.+.-
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHG   39 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            3579999999999999999999999999999987543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.21  E-value=0.0019  Score=58.48  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=31.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .|||||+|+.|+-+|..|++.|.+|+|+|++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            699999999999999999999999999999754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.21  E-value=0.0019  Score=58.05  Aligned_cols=34  Identities=29%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      .++|||+|+.|+-+|..|++.|.+|.|+|+++..
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            6999999999999999999999999999998654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.16  E-value=0.00015  Score=61.99  Aligned_cols=39  Identities=5%  Similarity=0.135  Sum_probs=35.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      .+++++|+|+|++|+|+|..|++.|.+||++++.+.++.
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             cCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            468999999999999999999999999999999887643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0034  Score=49.87  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ||+|||+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999998764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.77  E-value=0.00072  Score=57.08  Aligned_cols=28  Identities=32%  Similarity=0.388  Sum_probs=24.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEE
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMV   70 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv   70 (358)
                      +|+|||+|.+|+..|..|++.|.+|+++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            6999999999999999999999765443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.65  E-value=0.0039  Score=47.92  Aligned_cols=32  Identities=25%  Similarity=0.091  Sum_probs=30.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |+++|+|.|..|..+|..|.+.|.+|++++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            68999999999999999999999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.44  E-value=0.006  Score=46.86  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +|+|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            6899999999999999999999999999863

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=94.97  E-value=0.01  Score=53.60  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            689999999999999999999999999999853

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.83  E-value=0.029  Score=48.30  Aligned_cols=58  Identities=19%  Similarity=0.350  Sum_probs=43.4

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcC
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  103 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~  103 (358)
                      -++|+|.|| |++|..++..|.+.|.+|+++.|.+..    .+....+ ....+...+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~----~~~~~~~-~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV----SNIDKVQ-MLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS----SCHHHHH-HHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc----cchhHHH-HHhhhccCCcEEEEe
Confidence            467999996 999999999999999999999886542    2333222 344567788888743

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.044  Score=42.78  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=40.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  103 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~  103 (358)
                      .|++|+|.|..|..++..|.+.|.+|++++..+.         ......+.+...|+.++.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~---------~~~~~~~~~~~~~~~vi~G   56 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPE---------DDIKQLEQRLGDNADVIPG   56 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH---------HHHHHHHHHHCTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch---------hHHHHHHHhhcCCcEEEEc
Confidence            4899999999999999999999999999986432         2222233455668887765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.79  E-value=0.017  Score=46.19  Aligned_cols=115  Identities=20%  Similarity=0.288  Sum_probs=69.0

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  119 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~  119 (358)
                      ++.+|+|+|+|..|++.+..+.++|.+|++++.+         ++..+.++..+.+ .++.....+         .    
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~---------~~~l~~l~~~~~~-~~~~~~~~~---------~----   87 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN---------VERLSYLETLFGS-RVELLYSNS---------A----   87 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHGG-GSEEEECCH---------H----
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc---------HHHHHHHHHhhcc-cceeehhhh---------h----
Confidence            5789999999999999999999999999999864         3333444444332 233221110         0    


Q ss_pred             EEcCCCcEEecCeEEEe---eCCCCChhhhhccccc-ccCcEEEec------cccCCCC-----cEEEEcccccc
Q 018320          120 VNLRDGNRLPTDMVVVG---IGIRPNTSLFEGQLTL-EKGGIKVTG------RLQSSNS-----SVYAVGDVAAF  179 (358)
Q Consensus       120 v~~~~g~~i~~D~vi~a---~G~~p~~~l~~~~~~~-~~g~i~vd~------~~~t~~~-----~VyAiGD~~~~  179 (358)
                       .+ ....-++|.||-+   .|.++..-+-++.+.. ..|.+.||=      .++|+.|     .+|..-++..+
T Consensus        88 -~l-~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~Ets~ptt~~~p~~~~~gV~~y  160 (168)
T d1pjca1          88 -EI-ETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHY  160 (168)
T ss_dssp             -HH-HHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEE
T ss_pred             -hH-HHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCccccCCCCcccCCeEEECCEEEE
Confidence             00 0112358888865   3444433333444554 788999982      3454433     26766665543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.71  E-value=0.018  Score=46.72  Aligned_cols=125  Identities=18%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcC--CeeeEEEEcCCCcE
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG--TVLSSFDVDSNGKV  117 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~--~~v~~i~~~~~g~v  117 (358)
                      ++-+|+|+|+|..|+..+....++|..|++++..+.-             .+++++.+-+++.-  ......+. ..+--
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~-------------~~~l~~l~~~~i~~~~~~~~~~~~-~~gyA   93 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT-------------KEQVESLGGKFITVDDEAMKTAET-AGGYA   93 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT-------------HHHHHHTTCEECCC----------------
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH-------------HHHHHHhhcceEEEeccccccccc-cccch
Confidence            6789999999999999999999999999999876532             24456666555521  01111111 11100


Q ss_pred             EE--EEcCCC-------cEEecCeEEEee---CCCCChhhhhccccc-ccCcEEEec------cccCCCCc-EEEEcccc
Q 018320          118 VA--VNLRDG-------NRLPTDMVVVGI---GIRPNTSLFEGQLTL-EKGGIKVTG------RLQSSNSS-VYAVGDVA  177 (358)
Q Consensus       118 ~~--v~~~~g-------~~i~~D~vi~a~---G~~p~~~l~~~~~~~-~~g~i~vd~------~~~t~~~~-VyAiGD~~  177 (358)
                      ..  .++...       ..-++|.||-+.   |.++..-.-++.+.. ..|.+.||=      .++|+.|+ +|..-++.
T Consensus        94 ~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~  173 (183)
T d1l7da1          94 KEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVK  173 (183)
T ss_dssp             --------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEE
T ss_pred             hhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEE
Confidence            00  001010       013589988653   444333233334554 788999982      45666654 77666655


Q ss_pred             c
Q 018320          178 A  178 (358)
Q Consensus       178 ~  178 (358)
                      .
T Consensus       174 ~  174 (183)
T d1l7da1         174 I  174 (183)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.03  E-value=0.022  Score=51.95  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=31.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc
Q 018320           42 GNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   76 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~   76 (358)
                      -.+||||||..|+-+|..|++.+ .+|.|+|+++..
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            37999999999999999999988 699999999753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.96  E-value=0.061  Score=45.76  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=43.2

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEc
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  102 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~  102 (358)
                      -|||+|.|| |++|-.++..|.+.|.+|+.+.|.+....   +++.... ...+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence            478999996 99999999999999999999998765432   3333332 3445667777763

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.022  Score=39.56  Aligned_cols=34  Identities=24%  Similarity=0.119  Sum_probs=31.2

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |+|.|+|||..|-.++....++|.+|.++.+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5899999999999999999999999999987654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.058  Score=43.00  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=32.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++|+|+|+|+|-++-.++..|.+.|.+|+++.|.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            36899999999999999999999999999998774

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.65  E-value=0.035  Score=43.29  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             CCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           41 GGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      -++|.||| .|.+|.-+|..|.+.|++|+++.+.+
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47999999 69999999999999999999998754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.05  Score=40.34  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..+|.|+|||..|..+|....++|.+|.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            45799999999999999999999999999998654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.38  E-value=0.048  Score=44.34  Aligned_cols=37  Identities=32%  Similarity=0.364  Sum_probs=33.1

Q ss_pred             cCCCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           38 SCSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        38 ~~~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +.++|+++|.| +|-+|.++|..|++.|.+|+++.|..
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            34789999999 68999999999999999999998864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.36  E-value=0.049  Score=44.73  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|.|||.|++|+-+|..|++.|.+|+.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999998653

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=93.27  E-value=0.033  Score=50.48  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc
Q 018320           43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC   76 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~   76 (358)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE   53 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence            7999999999999999999876 799999999753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.26  E-value=0.032  Score=44.50  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=28.6

Q ss_pred             cEEEE-cCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVI-GGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVI-GgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++.|| |+|.+|..+|..|++.|++|++..|.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899 669999999999999999999998753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.21  E-value=0.067  Score=42.28  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=34.1

Q ss_pred             HHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           33 VNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        33 ~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      .+.+.....++++|||+|.+|-.++..|...|. ++++..|.
T Consensus        16 ~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             HHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            344445578999999999999999999999998 58888764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.17  E-value=0.071  Score=42.14  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=31.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++|+|+|+|.+|+-++..++..|.+|+++++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            36889999999999999999999999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.99  E-value=0.047  Score=43.33  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=32.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++++|+|+|+|.+|+-++..++..|.+|+.+++.+.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            3689999999999999999999899999999887643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.77  E-value=0.088  Score=41.42  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=31.9

Q ss_pred             cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           38 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        38 ~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      -.++++|+|+|+|.+|+-++..++..|.+|..+++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            346889999999999999999999999999988764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.05  Score=43.22  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+++|+|-|.+|-.+|..|+..|.+|++.+..|
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            68999999999999999999999999999998753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.65  E-value=0.025  Score=46.23  Aligned_cols=32  Identities=28%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++|||+|.-|.-+|..|++.|.+|++..|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            47999999999999999999999999998764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.64  E-value=0.13  Score=40.39  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=29.9

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.|||-|..|..+|..|.+.|.+|++..|.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            47999999999999999999999999998885

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.59  E-value=0.092  Score=41.67  Aligned_cols=34  Identities=12%  Similarity=0.209  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ++++|+|+|+|-+|-.++..|.+.|. +|+|+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            57899999999999999999999996 78998774

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=92.51  E-value=0.032  Score=50.02  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=29.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .+||||+|..|+-+|..|++. .+|.|+|+++.
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            799999999999999999986 89999999964

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.47  E-value=0.049  Score=42.97  Aligned_cols=31  Identities=26%  Similarity=0.199  Sum_probs=28.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++.|||.|..|..+|..|.+.|.+|+.++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.12  Score=40.94  Aligned_cols=35  Identities=23%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      .++++|+|+|+|.+|+-++..+..+|. +|+++++.
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            367899999999999999999999999 68777754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.11  E-value=0.21  Score=42.38  Aligned_cols=52  Identities=23%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEE
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      ++|.++|-|| +-+|.++|..|++.|.+|.+..+.         ++-.+.+.+.+++.|.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN---------REALEKAEASVREKGVEA   56 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            6889999885 569999999999999999998763         334455666777777554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.06  E-value=0.23  Score=42.09  Aligned_cols=54  Identities=22%  Similarity=0.190  Sum_probs=41.4

Q ss_pred             CCCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           39 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        39 ~~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      .++|.++|.| ++-+|.++|..|++.|.+|.++.|.+         +-.+.+.+.+++.+..++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~---------~~l~~~~~~~~~~~~~~~   58 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE---------KELDECLEIWREKGLNVE   58 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCCce
Confidence            3689999999 56799999999999999999998742         223445566777776554

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.15  Score=38.30  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=34.4

Q ss_pred             EEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHh
Q 018320          254 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  295 (358)
Q Consensus       254 ~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~  295 (358)
                      .||+++++|+|+.+++- -.+|....++|..+...+||.++.
T Consensus        88 IFYLrd~~VVGVLLWNv-Fnrm~iAR~iI~~~~~~~DlnEvA  128 (131)
T d1m6ia3          88 IFYLRDKVVVGIVLWNI-FNRMPIARKIIKDGEQHEDLNEVA  128 (131)
T ss_dssp             EEEEETTEEEEEEEESC-CSCHHHHHHHHHHCCBCSCSTTGG
T ss_pred             EEEecCCcEEEEEEecc-cCccHHHHHHHHcCCccchHHHHH
Confidence            37889999999999984 337888888999999999988764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.89  E-value=0.11  Score=41.52  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=32.6

Q ss_pred             HHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           33 VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        33 ~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++.....++|+++|+|+|-++-.++..|.+.| +|+|+.|.
T Consensus        10 ~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          10 EEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             HHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             HHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            33344457899999999999999999998877 89998774

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.89  E-value=0.084  Score=42.21  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      .++++|+|+|+|.+|+-++..++..|. +|+++++.
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            378899999999999999999999997 67777653

>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.88  E-value=0.18  Score=32.00  Aligned_cols=46  Identities=13%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             CeEEEEecCceEEEeecccceEEEEccCCCCceEEEEeeCCeEEEEEEeCC
Q 018320          220 PFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGG  270 (358)
Q Consensus       220 p~~~~~~~~~~~~~~G~~~~~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~  270 (358)
                      -+.+.++.+++++.+|.+.++-.=..+.     .+.+.++++|+|+.+++.
T Consensus         9 rSs~FKfgd~~iAiiG~~~g~G~Wid~~-----tK~Fy~d~KiiGaVV~~D   54 (62)
T d1xhca3           9 RSTVFKFGKLQIAIIGNTKGEGKWIEDN-----TKVFYENGKIIGAVVFND   54 (62)
T ss_dssp             CEEEEEETTEEEEEEECCSSCEEEEETT-----EEEEC-----CEEEEESC
T ss_pred             eeeeeeeCCccEEEEEeccCcceeeccc-----ceeeeeCCcEEEEEEehh
Confidence            4567889999999999776654433321     355668899999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.83  E-value=0.061  Score=43.16  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ++++|+|+|+|.+|+-++..+..+|+ +|+++++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc
Confidence            67899999999999999999999998 68888764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.096  Score=42.66  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             CCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320           41 GGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMA   78 (358)
Q Consensus        41 ~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~   78 (358)
                      -|+|+|.| .|.+|-.++..|.+.|.+|+++.|.+.-++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~   41 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP   41 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence            47899999 599999999999999999999998765443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.17  Score=39.86  Aligned_cols=36  Identities=17%  Similarity=0.072  Sum_probs=31.7

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++|+|+|+|.+|+-+++.++..|+++.++.+.+
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            378999999999999999999999999998877643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.55  E-value=0.067  Score=43.05  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=28.7

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +|.|||+|.-|.-+|..|++.|.+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999998763

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.49  E-value=0.1  Score=45.98  Aligned_cols=36  Identities=22%  Similarity=0.107  Sum_probs=32.7

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ++|+|+|.| +|++|..++..|.+.|.+|..+.|...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            579999999 689999999999999999999988654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.31  E-value=0.25  Score=41.98  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             CCCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           39 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        39 ~~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      .++|.++|.| ++-+|.++|..|++.|++|.+..|.+        ++..+.+.+.+++.|.+++
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~--------~~~~~~~~~~~~~~g~~~~   60 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK--------EDEANSVLEEIKKVGGEAI   60 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc--------HHHHHHHHHHHHhcCCcEE
Confidence            3688888887 46799999999999999999988753        3345556677777776654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.3  Score=41.11  Aligned_cols=54  Identities=19%  Similarity=0.105  Sum_probs=39.2

Q ss_pred             CCCCcEEEEcCc-HHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           39 CSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        39 ~~~~~vvVIGgG-~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      ..||.++|.||+ -+|.++|..|++.|.+|.+..|.+         +-.+.+.+.+++.|.+++
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~---------~~l~~~~~~~~~~~~~~~   59 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK---------HGLEETAAKCKGLGAKVH   59 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCcEE
Confidence            368888888864 599999999999999999987642         223444555666665433

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.07  E-value=0.16  Score=35.80  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             CcEEEEcCcHHHH-HHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEE
Q 018320           42 GNAVVIGGGYIGM-ECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  120 (358)
Q Consensus        42 ~~vvVIGgG~~gl-e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v  120 (358)
                      .|+=+||-|-+|+ -+|..|.++|++|+--++.+       .+     ..+.|++.||++..+.....+           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~~-----~t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------TE-----RTAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCCEESSCCTTSC-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------Ch-----hHHHHHHCCCeEEeeeccccc-----------
Confidence            3677788666776 46999999999999887542       12     234589999999876432111           


Q ss_pred             EcCCCcEEecCeEEEeeCCCCChhhh
Q 018320          121 NLRDGNRLPTDMVVVGIGIRPNTSLF  146 (358)
Q Consensus       121 ~~~~g~~i~~D~vi~a~G~~p~~~l~  146 (358)
                             -.+|.||++.+...+...+
T Consensus        59 -------~~~d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          59 -------YDPDLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             -------CCCSEEEECTTCCTTCHHH
T ss_pred             -------CCCCEEEEecCcCCCCHHH
Confidence                   2378999999887665543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.04  E-value=0.079  Score=41.31  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~   73 (358)
                      .+++|.|||+|.+|..+|..|...+.  ++.|++..
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            57899999999999999999998765  78888754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.81  E-value=0.15  Score=38.06  Aligned_cols=36  Identities=19%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCcH-----------HHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGY-----------IGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~-----------~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..++++|+|+|+           .+.+++..|++.|.++.++...|.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            458999999984           788999999999999999987654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.77  E-value=0.13  Score=45.29  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=31.6

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +.|+|+|+|| |++|-.++..|.+.|.+|+.+.|.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3589999995 9999999999999999999998864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.51  E-value=0.3  Score=41.55  Aligned_cols=54  Identities=26%  Similarity=0.252  Sum_probs=41.7

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      ++|.++|-| ++-+|.++|..|++.|.+|.+..+.+        .+..+.+.+.+++.|.+++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~--------~~~~~~~~~~~~~~g~~~~   71 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS--------TESAEEVVAAIKKNGSDAA   71 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc--------hHHHHHHHHHHHhhCCcee
Confidence            688888888 57799999999999999999887642        3445556667777776544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.31  Score=42.58  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=29.0

Q ss_pred             CcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           42 GNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      |+|+|.| +|++|-+++..|.+.|.+|+.+.+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            7899998 6999999999999999999999753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.28  E-value=0.21  Score=39.63  Aligned_cols=35  Identities=11%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++++|+|+|-++-.++..|.+.+.+|+++.|.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            36889999999999999999999988999999875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.27  E-value=0.16  Score=40.86  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++.|||-|.+|-++|..+...|.+|+.+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            57899999999999999999999999999998754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.15  E-value=0.4  Score=40.39  Aligned_cols=50  Identities=18%  Similarity=0.107  Sum_probs=36.0

Q ss_pred             CcEEE-EcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEE
Q 018320           42 GNAVV-IGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        42 ~~vvV-IGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      |+|++ -|| +-+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~i~~~g~~~   52 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN---------DATAKAVASEINQAGGHA   52 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            56644 464 569999999999999999998763         333455566677776543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.09  E-value=0.34  Score=40.89  Aligned_cols=54  Identities=24%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      .+|.++|.|| +-+|.++|..|++.|++|.+..+.        +.+..+.+.+.+++.|.+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~~   59 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKLGAQGV   59 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC--------ChHHHHHHHHHHHHcCCCce
Confidence            5788888875 569999999999999999987653        33445566677777775443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.08  E-value=0.54  Score=39.70  Aligned_cols=54  Identities=26%  Similarity=0.228  Sum_probs=39.8

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      .++|.++|-|| +-+|.++|..|++.|++|.+..|.         ++-.+.+.+.+++.|.+.+
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~~   60 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN---------QKELNDCLTQWRSKGFKVE   60 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence            36889999886 469999999999999999998763         2333444556666665543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.74  E-value=0.2  Score=39.15  Aligned_cols=35  Identities=20%  Similarity=0.094  Sum_probs=31.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++|+|.|+|.+|+-++..+...|.+|+++.+.
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            36889999999999999999999999998887654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=89.72  E-value=0.12  Score=40.90  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|+++|+|=|.+|--+|..|+..|.+|++.|..|
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            68999999999999999999999999999998654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.64  E-value=0.14  Score=39.68  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINK--INVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~   73 (358)
                      +.++|+|||+|.+|..+|..|...|  .++.++++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            3569999999999999999999987  489999754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.39  Score=38.25  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH   75 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~   75 (358)
                      .++++|+|+|+|-+|--++..|.+.|. +++++.|.+.
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            367899999999999999999999988 6888887654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.14  Score=43.14  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      .++|+|||.|-+|.++|..|++.|. ++++++..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            5799999999999999999999998 68888754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.44  E-value=0.41  Score=41.54  Aligned_cols=62  Identities=19%  Similarity=0.092  Sum_probs=44.6

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      ++|.++|-|+ +-+|.++|..|++.|++|.+..+........-..+..+.+.+.+...+....
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV   68 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccc
Confidence            5788888774 5599999999999999999998765543322344555666666777665554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.39  Score=40.57  Aligned_cols=52  Identities=19%  Similarity=0.182  Sum_probs=39.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEE
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      ++|.++|-|| +-+|.++|..|++.|++|.+..|.         ++-.+.+.+.+++.|.++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~~~~~~~~l~~~g~~~   62 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN---------ADAANHVVDEIQQLGGQA   62 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHHcCCcE
Confidence            6888888875 569999999999999999998763         233445556677766543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=89.39  E-value=0.15  Score=39.47  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   73 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~   73 (358)
                      |+|+|||+|.+|..+|..|...|.  ++.+++..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            789999999999999999998774  78887643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.38  E-value=0.13  Score=38.70  Aligned_cols=47  Identities=21%  Similarity=0.352  Sum_probs=34.7

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  103 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~  103 (358)
                      ||++|+|.|..|.+++..|.  +.+|.+++..+.         .    .+.+.+.|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~---------~----~~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN---------V----RKKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT---------H----HHHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH---------H----HHHHHhcCcccccc
Confidence            68999999999999999995  567888865432         1    12345678887754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.35  E-value=0.21  Score=42.33  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      .++|.++|.|| +-+|.++|..|++.|++|.+..|...
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36888999885 45999999999999999999988653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.08  E-value=0.18  Score=38.04  Aligned_cols=36  Identities=17%  Similarity=0.198  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCcH-----------HHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           40 SGGNAVVIGGGY-----------IGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        40 ~~~~vvVIGgG~-----------~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      ..|+|+|+|+|+           .+.+++..|++.|+++.++...|.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            468999999985           789999999999999999987654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=88.94  E-value=0.2  Score=39.15  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      +.++++|||+|.+|..+|..|...+. ++.+++..+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            56899999999999999998888775 788887544

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=0.58  Score=38.73  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             CCCCcEEEEcC-----------------cHHHHHHHHHHHhCCCcEEEEeeCCcccCc-c-------CCHHHHHHHHHHH
Q 018320           39 CSGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPEAHCMAR-L-------FTPKIASYYEEYY   93 (358)
Q Consensus        39 ~~~~~vvVIGg-----------------G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-~-------~~~~~~~~~~~~l   93 (358)
                      .++++|+|-+|                 |-.|.++|..+.++|++||+|.......++ .       -..+|...+.+.+
T Consensus         4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~   83 (223)
T d1u7za_           4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASV   83 (223)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHG
T ss_pred             cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhh
Confidence            36788888764                 679999999999999999999865443221 0       1256677777777


Q ss_pred             HhCCCEEEcCCeeeEEE
Q 018320           94 KSKGVKFVKGTVLSSFD  110 (358)
Q Consensus        94 ~~~gV~v~~~~~v~~i~  110 (358)
                      .+..+-+. ...|..+.
T Consensus        84 ~~~D~~i~-aAAvsDf~   99 (223)
T d1u7za_          84 QQQNIFIG-CAAVADYR   99 (223)
T ss_dssp             GGCSEEEE-CCBCCSEE
T ss_pred             ccceeEee-eechhhhh
Confidence            66655554 34444443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.86  E-value=0.23  Score=39.51  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|+-++..+...|.+ |++.++.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            678999999999999999999999985 55555543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.62  E-value=0.16  Score=42.74  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             cEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|+|.|| |++|-.++..|.+.|.+|+.+.|.+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            5899997 9999999999999999999888764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.35  Score=38.09  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++++|+|.|+ |.+|+-+...+...|++|+.+.+.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccc
Confidence            6789999995 999999999999999999887653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=0.28  Score=41.05  Aligned_cols=37  Identities=27%  Similarity=0.306  Sum_probs=31.9

Q ss_pred             cCCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           38 SCSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        38 ~~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +.++|.++|.|| +-+|.++|..|++.|++|.++.|..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            347899999985 5599999999999999999998865

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.56  E-value=0.26  Score=41.06  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+++|.|| +-+|.++|..|++.|.+|.++.+.+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4799999996 6799999999999999999987654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.53  E-value=0.26  Score=40.35  Aligned_cols=34  Identities=21%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320           38 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVF   71 (358)
Q Consensus        38 ~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~   71 (358)
                      +.++++|+|.|-|.+|..+|..|.+.|.+|++.+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d   57 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVAD   57 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEec
Confidence            3578999999999999999999999999998765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.50  E-value=0.26  Score=37.88  Aligned_cols=34  Identities=15%  Similarity=0.431  Sum_probs=28.6

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCc
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~   75 (358)
                      ++|+|||+|.+|..+|..|...+.  ++.|++..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            479999999999999999998876  8999986654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.47  E-value=0.52  Score=39.83  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=29.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.+..|.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6888888885 569999999999999999998774

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.40  E-value=0.5  Score=39.74  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=30.3

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++|.++|-|| +-+|.++|..|++.|++|.+..|.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            36889999985 569999999999999999998864

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.25  E-value=0.4  Score=41.76  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             HHHHHHhcCCCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           31 RLVNVMKSCSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        31 ~i~~~l~~~~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+++.+.. ++|+++|.| +|++|-.++..|.+.|.+|+.+.+..
T Consensus         7 ~~~~~~~~-~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_           7 ELRKELPA-QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             HHHHHHHH-SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             HHHHhCCC-CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            34444443 578999988 69999999999999999999998643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.21  E-value=0.29  Score=41.42  Aligned_cols=36  Identities=14%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcCc-HHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG-~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++|.++|.||+ -+|.++|..|++.|++|.++.|..
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            368999999865 599999999999999999998764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.58  Score=39.45  Aligned_cols=49  Identities=27%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG   97 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g   97 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~---------~~~l~~~~~~l~~~~   58 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCART---------VGNIEELAAECKSAG   58 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcC
Confidence            6888888884 569999999999999999988763         333455566666654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.14  E-value=0.24  Score=38.21  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=28.0

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~   73 (358)
                      |.+++|||+|.+|..+|..|...+.  ++.+++..
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4689999999999999999998876  78887643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.10  E-value=0.19  Score=40.59  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +|.|||.|++|+-+|..|+ .|.+|+.++-.+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            6899999999999998886 599999997654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.98  E-value=0.27  Score=38.50  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=26.0

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCc--EEEEee
Q 018320           42 GNAVVIGGGYIGMECAASLVINKIN--VTMVFP   72 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~--Vtlv~~   72 (358)
                      |++.|||.|.+|..+|..|.+.|..  |+.+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            4799999999999999999999864  555544

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.93  E-value=0.27  Score=41.71  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CCCcEEEEcC-c--HHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-G--YIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G--~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+++|.|+ |  -||..+|..|++.|.+|++..|.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6899999995 3  499999999999999999999764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.82  E-value=0.53  Score=40.30  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|-| ++-+|..+|..|++.|.+|++..|.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            678888888 5779999999999999999999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=87.80  E-value=0.24  Score=38.01  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      ++|.|||+|.+|..+|..|...+. ++.+++..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            589999999999999999988775 777776543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=87.78  E-value=0.26  Score=39.13  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=30.5

Q ss_pred             CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .+|-|||-|..|..+|..|.+.|.+|+++.|.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            579999999999999999999999999998754

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=87.75  E-value=0.25  Score=41.66  Aligned_cols=34  Identities=15%  Similarity=0.058  Sum_probs=29.3

Q ss_pred             CCCcEEEEcC-cH--HHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GY--IGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~--~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|+++|.|+ |-  +|.++|..|++.|++|.+..+.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            6899999994 43  9999999999999999987654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.68  E-value=0.28  Score=41.34  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             CCCCcEEEEcCc---HHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGG---YIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG---~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++|.++|.|++   -+|.++|..|++.|.+|.+..+.+
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            368999999963   399999999999999998876653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.48  E-value=0.29  Score=39.83  Aligned_cols=34  Identities=18%  Similarity=-0.033  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++.|||-|.+|-++|..|...|.+|..+.+.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            5789999999999999999999999999888653

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.48  E-value=0.22  Score=40.43  Aligned_cols=33  Identities=12%  Similarity=0.135  Sum_probs=27.2

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCCCc--EEEEeeC
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINKIN--VTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g~~--Vtlv~~~   73 (358)
                      +|+|+|.|| |++|-+++..|.+.|..  |+.+.|.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            689999997 99999999999999974  4444443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.53  Score=39.96  Aligned_cols=50  Identities=14%  Similarity=0.197  Sum_probs=36.4

Q ss_pred             CCcEEEE--cCcHHHHHHHHHHHhC-CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE
Q 018320           41 GGNAVVI--GGGYIGMECAASLVIN-KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        41 ~~~vvVI--GgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~   99 (358)
                      +|||+||  |++-||.++|..|++. |.+|.+..|..         +-.+.+.+.|++.|.+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~---------~~~~~~~~~l~~~~~~   54 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV---------TRGQAAVQQLQAEGLS   54 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH---------HHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH---------HHHHHHHHHHHhcCCc
Confidence            7899888  4556889999999875 89999987743         3344555666766544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.20  E-value=0.35  Score=38.42  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=30.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|+-++..++..|. +|..++..+
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            67899999999999999999999995 688887654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.18  E-value=0.79  Score=38.38  Aligned_cols=51  Identities=25%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK   99 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~   99 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~---------~~~l~~~~~~l~~~g~~   60 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT---------QKSCDSVVDEIKSFGYE   60 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS---------HHHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC---------HHHHHHHHHHHHhcCCc
Confidence            5677778785 569999999999999999998764         33344556667776654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=87.13  E-value=0.36  Score=39.12  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..++++.|||-|.+|-++|..|...|.+|....+.
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             eeCceEEEeccccccccceeeeeccccceeeccCc
Confidence            36899999999999999999999999999988764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.09  E-value=0.31  Score=41.69  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=31.1

Q ss_pred             CCCCcEEEEcCc---HHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGG---YIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG---~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++|+++|-|++   -||.++|..|++.|.+|.+..+.+
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            368999999974   499999999999999999887643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.03  E-value=0.32  Score=39.61  Aligned_cols=35  Identities=20%  Similarity=0.095  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++.|||-|.||-++|..|...|.+|..+.+.+
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCcc
Confidence            46899999999999999999999999999987643

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.65  E-value=0.97  Score=40.01  Aligned_cols=31  Identities=35%  Similarity=0.533  Sum_probs=28.0

Q ss_pred             CCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEe
Q 018320           41 GGNAVVIG-GGYIGMECAASLVINKINVTMVF   71 (358)
Q Consensus        41 ~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~   71 (358)
                      |++|+|.| +|++|..++..|.+.|.+|+.++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            57899998 69999999999999999999985

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=86.47  E-value=0.44  Score=39.99  Aligned_cols=56  Identities=18%  Similarity=0.129  Sum_probs=38.4

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCc-EEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      +++.++|.| +|-+|.++|..|++.|.+ |.++.|...-.      +..+.+.+.+++.|.++.
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~------~~~~~~~~~l~~~g~~v~   65 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA------DGAGELVAELEALGARTT   65 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS------TTHHHHHHHHHHTTCEEE
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCH------HHHHHHHHHHHhcccccc
Confidence            567888888 578999999999999985 67776643211      223344556677776654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.46  E-value=0.36  Score=42.25  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|+|+|.| +|++|..++..|.+.|.+|..+.|.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            579999998 5999999999999999999877664

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.38  E-value=0.21  Score=39.07  Aligned_cols=31  Identities=16%  Similarity=0.196  Sum_probs=28.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +|-|||-|..|..+|..|.+.|.+|++..|.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5889999999999999999999999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.18  E-value=0.4  Score=37.80  Aligned_cols=32  Identities=13%  Similarity=0.288  Sum_probs=28.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVF   71 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~   71 (358)
                      ++++|+|+|+|.+|+-++..+...|.++.++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~   59 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAV   59 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeee
Confidence            67899999999999999999999999876654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.97  E-value=0.51  Score=39.77  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=29.2

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|.++|-|| +-+|.++|..|++.|.+|.+..|.+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5777777774 5599999999999999999988753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.92  E-value=0.34  Score=37.33  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ||.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            68999999999999999999999998876543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=0.35  Score=40.53  Aligned_cols=35  Identities=17%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCc---HHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGG---YIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG---~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|.++|.||+   -+|..+|..|++.|.+|.+..+.+
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68899999875   388999999999999999988764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=0.31  Score=44.62  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ..+|+|||.|-+|+|+|..|+..|. +++|++..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4689999999999999999999998 79998875

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.75  E-value=0.61  Score=36.94  Aligned_cols=35  Identities=26%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             CCCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ..+|+++||| +..+|.-+|..|.++|..||+.+..
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            4789999999 5567999999999999999988754

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.55  E-value=0.43  Score=40.96  Aligned_cols=34  Identities=24%  Similarity=0.187  Sum_probs=30.4

Q ss_pred             CcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |+|+|.| +|++|-.++..|.++|.+|+.+.|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6899998 599999999999999999999988653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.47  E-value=0.8  Score=38.87  Aligned_cols=49  Identities=18%  Similarity=0.190  Sum_probs=36.8

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG   97 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g   97 (358)
                      ++|.++|-|| +-+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~i~~~~   52 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN---------EDRLEETKQQILKAG   52 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHHcC
Confidence            5788888885 569999999999999999998763         233344555666654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=0.59  Score=38.41  Aligned_cols=45  Identities=13%  Similarity=0.241  Sum_probs=35.4

Q ss_pred             HHHHHHHhcCCCCcEEEEc-CcHHHHHHHHHHHhCCC--cEEEEeeCCc
Q 018320           30 NRLVNVMKSCSGGNAVVIG-GGYIGMECAASLVINKI--NVTMVFPEAH   75 (358)
Q Consensus        30 ~~i~~~l~~~~~~~vvVIG-gG~~gle~A~~L~~~g~--~Vtlv~~~~~   75 (358)
                      .++++.+.. +.++|+|.| .|++|-+++..|.+.|.  +|+++.|.+.
T Consensus         4 ~~~~~~~~m-~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1           4 SKLREDFRM-QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             HHHHHHHHH-TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             HHHHHHhCC-CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            345555543 468899998 59999999999999885  8999998764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=85.08  E-value=0.5  Score=36.05  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=27.9

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCC
Q 018320           43 NAVVIGGGYIGMECAASLVINKI--NVTMVFPEA   74 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~   74 (358)
                      +++|||+|.+|..+|..|...+.  ++.+++..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            68999999999999999999874  899988654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.54  Score=39.28  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|+++|.|+ +-+|.++|..|++.|.+|.++.|.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            6899999984 569999999999999999998764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.92  E-value=0.85  Score=38.61  Aligned_cols=49  Identities=18%  Similarity=0.166  Sum_probs=36.7

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG   97 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g   97 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.+..|.+         +-.+.+.+.+++.+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~---------~~l~~~~~~l~~~~   53 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS---------ERLEETRQIILKSG   53 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcC
Confidence            6788888884 5699999999999999999998643         33344455565544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.90  E-value=0.55  Score=39.19  Aligned_cols=35  Identities=29%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++|.++|.|+ +-+|.++|..|++.|.+|.++.|.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999985 569999999999999999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.82  E-value=0.43  Score=38.59  Aligned_cols=34  Identities=26%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEee
Q 018320           39 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFP   72 (358)
Q Consensus        39 ~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~   72 (358)
                      .++++|+|+|+|.+|+-++..+...|. +|.++++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~   58 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL   58 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence            368899999999999999998888887 4566554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.69  E-value=0.49  Score=39.49  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.|| +-+|.++|..|++.|++|.+..|.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~   38 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDRE   38 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6889999885 459999999999999999998764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.56  E-value=0.42  Score=37.79  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      ++++|+|+|+|.+|+-++..++..|. +|..+++.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            67899999999999999999999997 46666554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.55  E-value=0.54  Score=33.42  Aligned_cols=75  Identities=19%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             CCCcEEEEcCcHHHHHH-HHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320           40 SGGNAVVIGGGYIGMEC-AASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  118 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~-A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~  118 (358)
                      ..+++-+||-|-+|+.. |..|.++|.+|+--+...       .+.     .+.|.+.|+++..+.....+         
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-------~~~-----~~~L~~~Gi~v~~g~~~~~i---------   65 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-------GVV-----TQRLAQAGAKIYIGHAEEHI---------   65 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-------SHH-----HHHHHHTTCEEEESCCGGGG---------
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-------Chh-----hhHHHHCCCeEEECCccccC---------
Confidence            46899999977788765 999999999999887642       222     24566789998866432111         


Q ss_pred             EEEcCCCcEEecCeEEEeeCCCCChh
Q 018320          119 AVNLRDGNRLPTDMVVVGIGIRPNTS  144 (358)
Q Consensus       119 ~v~~~~g~~i~~D~vi~a~G~~p~~~  144 (358)
                               -..|+||++.+...+..
T Consensus        66 ---------~~~d~vV~S~AI~~~np   82 (96)
T d1p3da1          66 ---------EGASVVVVSSAIKDDNP   82 (96)
T ss_dssp             ---------TTCSEEEECTTSCTTCH
T ss_pred             ---------CCCCEEEECCCcCCCCH
Confidence                     13588999988766544

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=84.54  E-value=0.56  Score=36.75  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~   73 (358)
                      +..+|.|||+|.+|..+|..|...|.  ++.|++..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            45699999999999999999999987  78888653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.39  E-value=1.6  Score=36.49  Aligned_cols=51  Identities=22%  Similarity=0.158  Sum_probs=36.3

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEE
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF  100 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v  100 (358)
                      +|-++|-|| +-+|.++|..|++.|.+|.+..|.         ++-.+.+.+.+++.|.++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~---------~~~l~~~~~~l~~~g~~~   53 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARG---------EEGLRTTLKELREAGVEA   53 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            455566664 569999999999999999998763         333444556677766543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.33  E-value=1.1  Score=37.84  Aligned_cols=35  Identities=26%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|+++|.|| +-+|.++|..|++.|.+|.++.|..
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6899999985 4599999999999999999998753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=0.48  Score=40.90  Aligned_cols=31  Identities=23%  Similarity=0.458  Sum_probs=28.6

Q ss_pred             CcEEEEc-CcHHHHHHHHHHHhCCCcEEEEee
Q 018320           42 GNAVVIG-GGYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        42 ~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      |+|+|.| +|++|-.++..|.+.|.+|+.+.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            7899998 599999999999999999999875

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.30  E-value=0.6  Score=39.34  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             CCCCcEEEEcCc-HHHHHHHHHHHhCCCcEEEEeeC
Q 018320           39 CSGGNAVVIGGG-YIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIGgG-~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++|.++|.||+ -+|.++|..|++.|++|.+..|.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            468999999854 69999999999999999998764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.00  E-value=0.44  Score=37.60  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=28.5

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +|-|||-|..|..+|..|.+.|.+|++..|.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            5889999999999999999999999988753

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.86  E-value=0.93  Score=35.76  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+++|||- ...|.-+|..|.+.|+.|++++...
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            37899999995 5599999999999999999998654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.72  E-value=1.6  Score=37.71  Aligned_cols=31  Identities=29%  Similarity=0.450  Sum_probs=27.7

Q ss_pred             cEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      +|+|.| +|++|-.++..|.+.|.+|+++.+-
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            588887 6999999999999999999999764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=83.64  E-value=0.92  Score=35.64  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             CCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ..+|+++|||.+. .|.-+|..|.+.|+.||+++...
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            4789999999654 99999999999999999997543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.63  E-value=0.65  Score=37.20  Aligned_cols=35  Identities=11%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++.|||.|.+|.++|..|...|.+|....+..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            67899999999999999999999999999988753

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.55  E-value=0.59  Score=39.00  Aligned_cols=34  Identities=12%  Similarity=0.070  Sum_probs=29.9

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|-|| +-+|.++|..|++.|.+|.+..|.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            5788888885 569999999999999999998874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.52  E-value=0.69  Score=38.27  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.|+ +-+|.++|..|++.|.+|.+..|.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~   37 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN   37 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999985 569999999999999999998764

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.45  E-value=2.1  Score=32.28  Aligned_cols=42  Identities=12%  Similarity=0.124  Sum_probs=34.3

Q ss_pred             HHHHHHHhcCCCCcEEEEcCc----HHHHHHHHHHHhCCCcEEEEeeC
Q 018320           30 NRLVNVMKSCSGGNAVVIGGG----YIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        30 ~~i~~~l~~~~~~~vvVIGgG----~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++.+.  ++|+++|||+.    -.|-.++..|.+.|.+|..|.+.
T Consensus        10 ~~i~~~L~--~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~   55 (139)
T d2d59a1          10 EDIREILT--RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK   55 (139)
T ss_dssp             HHHHHHHH--HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHHh--cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc
Confidence            44666564  47999999975    47899999999999999999875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.28  E-value=0.55  Score=39.09  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCc-HHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320           40 SGGNAVVIGGG-YIGMECAASLVINKINVTMVFPEAHC   76 (358)
Q Consensus        40 ~~~~vvVIGgG-~~gle~A~~L~~~g~~Vtlv~~~~~~   76 (358)
                      ++|.++|-||+ -+|.++|..|++.|.+|.+..|...-
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            67888888854 69999999999999999999987643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.20  E-value=0.78  Score=36.68  Aligned_cols=35  Identities=23%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++.|||-|.+|-++|..+...|.+|....+..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            67899999999999999999999999999998654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.07  E-value=0.67  Score=40.58  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      +..+|+|.| +|++|..++..|.++|.+|+.+.+.+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            357899998 69999999999999999999997654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.98  E-value=0.83  Score=35.21  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=27.7

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      ..+|.|||+|.+|..+|..|...+. ++.|++..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4589999999999999998888765 677776543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=82.87  E-value=0.72  Score=39.23  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|-|| +-+|.++|..|++.|++|.++.|.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6889999885 679999999999999999998875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.86  E-value=1.2  Score=37.40  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG   97 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g   97 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.+..|..         +-.+.+.+.+++.|
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~l~~~~   53 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA---------ERLEETRQQILAAG   53 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcC
Confidence            5777777774 6799999999999999999987642         23344455555554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.74  E-value=0.74  Score=38.90  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.++.+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6888888884 569999999999999999998764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.70  E-value=0.51  Score=39.49  Aligned_cols=34  Identities=15%  Similarity=0.111  Sum_probs=29.6

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.| ++-+|.++|..|++.|.+|.++.|.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~   39 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            577777776 5789999999999999999999875

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=82.63  E-value=0.95  Score=37.84  Aligned_cols=35  Identities=23%  Similarity=0.132  Sum_probs=31.0

Q ss_pred             hcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320           37 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF   71 (358)
Q Consensus        37 ~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~   71 (358)
                      .+.++++|+|-|-|.+|..+|..|.+.|.+|+-+.
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            34578999999999999999999999999986554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=82.50  E-value=0.83  Score=38.21  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             CCCcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|.++|-| ++-+|.++|..|++.|.+|.+..+.+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            688899888 56799999999999999999988754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=82.33  E-value=0.99  Score=37.45  Aligned_cols=34  Identities=18%  Similarity=0.116  Sum_probs=31.0

Q ss_pred             cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320           38 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVF   71 (358)
Q Consensus        38 ~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~   71 (358)
                      +.++++++|-|-|.+|..+|..|.+.|.+|+...
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d   69 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD   69 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeec
Confidence            3578999999999999999999999999999764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.30  E-value=0.7  Score=40.05  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=29.4

Q ss_pred             CcE-EEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNA-VVIG-GGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~v-vVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |+| +|.| +|++|..++..|.+.|++|+.+.|.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            578 6877 589999999999999999999988653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.21  E-value=2.6  Score=34.31  Aligned_cols=97  Identities=19%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             EecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEE
Q 018320           22 YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  101 (358)
Q Consensus        22 ~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~  101 (358)
                      ++..+.-..++.+.++-.++.+|+.||+| +|...|....-.|.+|+.+++         ++++.+...+.+++.|+.  
T Consensus        60 ~is~P~~~a~ml~~L~l~~g~~VLeIGsG-sGY~taila~l~g~~V~~ie~---------~~~l~~~a~~~l~~~g~~--  127 (215)
T d1jg1a_          60 TVSAPHMVAIMLEIANLKPGMNILEVGTG-SGWNAALISEIVKTDVYTIER---------IPELVEFAKRNLERAGVK--  127 (215)
T ss_dssp             EECCHHHHHHHHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCSCEEEEES---------CHHHHHHHHHHHHHTTCC--
T ss_pred             hhhhhhhHHHHHHhhccCccceEEEecCC-CChhHHHHHHhhCceeEEEec---------cHHHHHHHHHHHHHcCCc--
Confidence            56677776777788877788999999976 444443222222667888874         567777778888887742  


Q ss_pred             cCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320          102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  140 (358)
Q Consensus       102 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~  140 (358)
                         .++-+.  +|+.     ......-++|.+++..+..
T Consensus       128 ---nv~~~~--gd~~-----~g~~~~~pfD~Iiv~~a~~  156 (215)
T d1jg1a_         128 ---NVHVIL--GDGS-----KGFPPKAPYDVIIVTAGAP  156 (215)
T ss_dssp             ---SEEEEE--SCGG-----GCCGGGCCEEEEEECSBBS
T ss_pred             ---eeEEEE--Cccc-----cCCcccCcceeEEeecccc
Confidence               222222  2220     0011345789888876654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.13  E-value=0.51  Score=37.20  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=28.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEee
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFP   72 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~   72 (358)
                      ++++|+|.|| |.+|+-++..+...|.+|..+.+
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~   58 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG   58 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeec
Confidence            5678998886 99999999999999999987764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.76  E-value=5.1  Score=30.12  Aligned_cols=62  Identities=15%  Similarity=0.192  Sum_probs=40.8

Q ss_pred             CCcEEEEcC-cHHHHHHHHHHHhCC---CcEEEEeeCCcccCc--------------------------cCCHHHHHHHH
Q 018320           41 GGNAVVIGG-GYIGMECAASLVINK---INVTMVFPEAHCMAR--------------------------LFTPKIASYYE   90 (358)
Q Consensus        41 ~~~vvVIGg-G~~gle~A~~L~~~g---~~Vtlv~~~~~~l~~--------------------------~~~~~~~~~~~   90 (358)
                      +-+|.|||+ |++|.|+...|.++.   .+++.+.........                          ..+.+.+..+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~   81 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHA   81 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhc
Confidence            458999996 999999999998653   466665433211000                          13556677777


Q ss_pred             HHHHhCCCEEEc
Q 018320           91 EYYKSKGVKFVK  102 (358)
Q Consensus        91 ~~l~~~gV~v~~  102 (358)
                      ..+.+.|..++-
T Consensus        82 ~~~~~~g~~VID   93 (144)
T d2hjsa1          82 ERARAAGCSVID   93 (144)
T ss_dssp             HHHHHTTCEEEE
T ss_pred             cccccCCceEEe
Confidence            777777777653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.74  E-value=0.87  Score=36.30  Aligned_cols=34  Identities=26%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      .++++.|+|.|.+|-++|..+...|.+|....+.
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~   76 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY   76 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCC
Confidence            5789999999999999999999999999887653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=0.67  Score=40.75  Aligned_cols=33  Identities=24%  Similarity=0.153  Sum_probs=28.4

Q ss_pred             CcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           42 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        42 ~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      |.|+|.| +|++|..++..|.+.|.+|+.+.|.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6677888 79999999999999999999998754

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.26  E-value=0.64  Score=39.07  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.+..|.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6788999885 679999999999999999998764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.21  E-value=0.93  Score=37.82  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|-|+ +-+|.++|..|++.|.+|.+..|.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6788888885 569999999999999999998764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.01  E-value=1.2  Score=34.74  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      .++++|+|.|+ |.+|.-+...+...|++|..+.+.+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            36788999995 9999999999999999998887654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.80  E-value=0.74  Score=35.38  Aligned_cols=31  Identities=13%  Similarity=0.093  Sum_probs=28.1

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++.+||.|..|.-++..|.+.|.++++..|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            5899999999999999999999999987764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.76  E-value=1.1  Score=34.79  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=28.7

Q ss_pred             CCCCcEEEEc-CcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320           39 CSGGNAVVIG-GGYIGMECAASLVINKI-NVTMVFPE   73 (358)
Q Consensus        39 ~~~~~vvVIG-gG~~gle~A~~L~~~g~-~Vtlv~~~   73 (358)
                      .++++|+|+| +|.+|+-++..+...|. +|+++++.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccc
Confidence            3678999999 59999999999998885 67777654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=80.74  E-value=0.91  Score=35.49  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|.-++..++..|. +|..+++.+
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            67899999999999999999999986 666666543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.99  Score=37.78  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|-|+ +-+|.++|..|++.|.+|.+..|.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999985 679999999999999999998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=80.71  E-value=1  Score=37.56  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~   74 (358)
                      ++|.++|-|| +-+|..+|..|++.|.+|.+..+.+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            6888888886 5699999999999999999988753

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.65  E-value=0.86  Score=39.21  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=29.9

Q ss_pred             CcEEEEc-CcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIG-GGYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIG-gG~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |+++|.| +|++|..++..|.+.|++|+.+.|...
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~   36 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   36 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            5778877 699999999999999999999988643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=80.52  E-value=1  Score=35.09  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             CCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCC
Q 018320           40 SGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEA   74 (358)
Q Consensus        40 ~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~   74 (358)
                      ++++|+|+|+|.+|+-++..++..|.. |+.+++.+
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            678899999999999999999998875 66665543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.49  E-value=0.79  Score=37.52  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=28.9

Q ss_pred             CcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320           42 GNAVVIGG-GYIGMECAASLVINKINVTMVFPEAH   75 (358)
Q Consensus        42 ~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~   75 (358)
                      |.++|-|| +-+|.++|..|++.|++|.+..+.+.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            66777774 67999999999999999999987653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.48  E-value=0.99  Score=35.17  Aligned_cols=32  Identities=28%  Similarity=0.575  Sum_probs=27.6

Q ss_pred             CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEee
Q 018320           41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFP   72 (358)
Q Consensus        41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~   72 (358)
                      ..+|.|||+|.+|..+|..|...+.  ++.|++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~   52 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDA   52 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            3479999999999999999998876  7888864

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.47  E-value=0.57  Score=35.85  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=26.4

Q ss_pred             cEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeC
Q 018320           43 NAVVIGGGYIGMECAASLVINKI--NVTMVFPE   73 (358)
Q Consensus        43 ~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~   73 (358)
                      ++.|||+|.+|..+|..|...+.  ++.+++..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            68999999999999999997764  68888653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.38  E-value=0.96  Score=37.83  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320           40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE   73 (358)
Q Consensus        40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~   73 (358)
                      ++|.++|.|| +-+|.++|..|++.|.+|.+..|.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4788888885 569999999999999999998874